AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019910 MtrunA17_Chr1g0171131 98.972 389 4 0 1 389 1 389 0.0 805
Msa0019910 MtrunA17_Chr2g0323981 56.958 309 129 3 70 377 63 368 7.86e-125 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019910 AT5G08415.1 77.003 387 82 5 1 380 2 388 0.0 586
Msa0019910 AT2G20860.2 60.627 287 112 1 92 377 76 362 2.29e-124 364
Msa0019910 AT2G20860.3 60.627 287 112 1 92 377 76 362 2.29e-124 364
Msa0019910 AT2G20860.1 60.627 287 112 1 92 377 76 362 2.29e-124 364

Find 129 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATATGTGATAATAAATT+AGG 0.126617 1_1:+34860208 None:intergenic
CGCCTGAGAAGTTTGATTTC+TGG 0.184593 1_1:-34860821 Msa0019910:CDS
AGGAAACAATGATGGATTTA+AGG 0.195263 1_1:-34861083 Msa0019910:CDS
TTTGATTTCTGGAAAGAATA+TGG 0.216343 1_1:-34860810 Msa0019910:CDS
CAAGTTTATCACACCTAAAA+AGG 0.216919 1_1:+34866113 Msa0019920:CDS
AGTCAGAATATCCACATTTA+TGG 0.217980 1_1:+34861059 None:intergenic
CAATGATCCATCTGCATTCT+TGG 0.227209 1_1:+34860461 None:intergenic
ACAGGTGTCTTCCATTTCTT+TGG 0.231844 1_1:-34860335 Msa0019910:three_prime_UTR
AATAGAACCTCTCCAATATT+TGG 0.232954 1_1:+34865382 None:intergenic
GACTCTTGGTCAGTATTTGC+AGG 0.274453 1_1:-34861040 Msa0019910:intron
AATTCTTTACTGTGTGATTA+TGG 0.275813 1_1:-34860434 Msa0019910:three_prime_UTR
CTCTGCCCTTGTCAACAATT+AGG 0.304912 1_1:+34865916 Msa0019920:five_prime_UTR
CAATATGTGATAATAAATTA+GGG 0.308090 1_1:+34860209 None:intergenic
TGCCAAGGCCATTGCCAGTT+GGG 0.317716 1_1:-34863610 Msa0019910:CDS
CACTTTCTCTTACCATTGTC+TGG 0.327872 1_1:+34860484 None:intergenic
TCCATAGGATCGGGAGGAGC+TGG 0.334124 1_1:+34863645 None:intergenic
GGACCTTACCCAGGTGGGTT+GGG 0.348168 1_1:-34865544 Msa0019910:CDS
GAAGCACAGTGTCCAAATAT+TGG 0.370804 1_1:-34865394 Msa0019910:CDS
TGAAACATTGTGACAACTTT+GGG 0.382088 1_1:+34865769 Msa0019920:five_prime_UTR
GGAAACAATGATGGATTTAA+GGG 0.385531 1_1:-34861082 Msa0019910:CDS
AAAGAATATGGAGAGTCTAT+TGG 0.397197 1_1:-34860798 Msa0019910:CDS
TGTAATTAATACTGGTGAAA+AGG 0.397952 1_1:+34865972 Msa0019920:five_prime_UTR
TTCCAGAAATCAAACTTCTC+AGG 0.413110 1_1:+34860819 None:intergenic
CCCAGCTCCTCCCGATCCTA+TGG 0.413916 1_1:-34863646 Msa0019910:CDS
AGAAAGATGCTTAGCTATAC+AGG 0.417896 1_1:-34860353 Msa0019910:three_prime_UTR
CTGCTACAATCATGGTTCTC+GGG 0.418545 1_1:-34863719 Msa0019910:CDS
ATGAAACATTGTGACAACTT+TGG 0.421035 1_1:+34865768 Msa0019920:five_prime_UTR
ATGAAATGGGTTTGAGGAGA+AGG 0.424785 1_1:+34865717 Msa0019920:five_prime_UTR
TTGAATCGAAGATGAGTAAT+GGG 0.425422 1_1:+34865998 Msa0019920:exon
AACAAAATCTTCGATAATGT+TGG 0.426835 1_1:-34861133 Msa0019910:CDS
TCCTCCCGATCCTATGGAAC+CGG 0.429656 1_1:-34863640 Msa0019910:CDS
GCCAAGGCCATTGCCAGTTG+GGG 0.447565 1_1:-34863609 Msa0019910:CDS
ATATCTTTGCTCCAAAGAAA+TGG 0.449260 1_1:+34860324 None:intergenic
AGCTGATGGAATCAGAGAAC+AGG 0.451110 1_1:-34865570 Msa0019910:CDS
TGGACCTTACCCAGGTGGGT+TGG 0.453197 1_1:-34865545 Msa0019910:CDS
ACAAAATCTTCGATAATGTT+GGG 0.455030 1_1:-34861132 Msa0019910:CDS
TTCGGGTCTCTTCCTGTGAA+TGG 0.466929 1_1:+34865520 None:intergenic
GGGAGGAGCTGGGTTTCTGC+TGG 0.467982 1_1:+34863656 None:intergenic
AATGTGGATATTCTGACTCT+TGG 0.468083 1_1:-34861054 Msa0019910:CDS
TACGATCTTCATACCGAGCT+GGG 0.475429 1_1:-34860518 Msa0019910:CDS
ACTGCTACAATCATGGTTCT+CGG 0.478925 1_1:-34863720 Msa0019910:CDS
TCTTCGATAATGTTGGGCCT+TGG 0.479648 1_1:-34861126 Msa0019910:CDS
GATATACCTGATGGAGGAAG+TGG 0.485272 1_1:-34862857 Msa0019910:CDS
GGTGGGTTGGGTCCATTCAC+AGG 0.486805 1_1:-34865532 Msa0019910:CDS
AAATGCCCACTTCCTCCATC+AGG 0.490145 1_1:+34862851 None:intergenic
GTGAATGGACCCAACCCACC+TGG 0.491090 1_1:+34865535 None:intergenic
CCATAGGATCGGGAGGAGCT+GGG 0.495035 1_1:+34863646 None:intergenic
AAACACTCAACCATGATCTC+AGG 0.502212 1_1:+34862684 None:intergenic
GAATATCAAACCTGAGATCA+TGG 0.503466 1_1:-34862694 Msa0019910:CDS
AACGAATTGTTAGAGATCCT+AGG 0.509719 1_1:-34862563 Msa0019910:CDS
TTTGAATCGAAGATGAGTAA+TGG 0.511179 1_1:+34865997 Msa0019920:exon
GGACCCAACCCACCTGGGTA+AGG 0.512157 1_1:+34865541 None:intergenic
ATTGTTAGAGATCCTAGGGC+TGG 0.513996 1_1:-34862558 Msa0019910:CDS
AGAGCTTACCAGTGGGCCGC+TGG 0.519862 1_1:+34860761 None:intergenic
TGGGAAGGAAGAGAAAGAAA+AGG 0.521165 1_1:+34866017 Msa0019920:CDS
TGAAGAGAAAAGAACAAGGT+TGG 0.523005 1_1:+34865796 Msa0019920:five_prime_UTR
CTCTTTGACTGTCAAGTGCA+AGG 0.525409 1_1:+34860851 None:intergenic
CTGCCAAGGCCATTGCCAGT+TGG 0.526027 1_1:-34863611 Msa0019910:CDS
GAGAGGATATCTAGATAAGC+AGG 0.526274 1_1:-34866091 Msa0019910:five_prime_UTR
TATTGCAACTGCTACAATCA+TGG 0.529575 1_1:-34863727 Msa0019910:CDS
TGTTGGAATGGAGGCGATGA+TGG 0.537100 1_1:-34863750 Msa0019910:CDS
GAGGAGAAGGAGAAAGAACA+AGG 0.538808 1_1:+34865730 Msa0019920:five_prime_UTR
TCTTAAGGCTGTAGAAACTC+TGG 0.539250 1_1:-34862640 Msa0019910:CDS
TTCGAAAACCTTTCACCTTG+AGG 0.539589 1_1:+34865463 None:intergenic
TCCATCACTTTCACATTCCG+AGG 0.544757 1_1:-34865641 Msa0019910:CDS
GTCGGCGATGTCGAAGCTGA+TGG 0.545546 1_1:-34865584 Msa0019910:CDS
CCAAGGCCATTGCCAGTTGG+GGG 0.548808 1_1:-34863608 Msa0019910:intron
TTATGTAGCCAGCGGCCCAC+TGG 0.550759 1_1:-34860769 Msa0019910:intron
GTACGATCTTCATACCGAGC+TGG 0.551111 1_1:-34860519 Msa0019910:CDS
TAGGATCTCTAACAATTCGT+TGG 0.551390 1_1:+34862565 None:intergenic
GAAAGTGCCAAGAATGCAGA+TGG 0.560278 1_1:-34860468 Msa0019910:CDS
TTGTTAGAGATCCTAGGGCT+GGG 0.560393 1_1:-34862557 Msa0019910:intron
CATAAACCTAATTGTTGACA+AGG 0.562774 1_1:-34865922 Msa0019910:five_prime_UTR
AAACCATGCAAAACAAAGCA+AGG 0.563286 1_1:-34861166 Msa0019910:CDS
CTCGGGGATACATGCACTCG+TGG 0.565207 1_1:-34863702 Msa0019910:CDS
TGAGGTGAAGGAAACAATGA+TGG 0.565727 1_1:-34861091 Msa0019910:CDS
ACCGACAGAGGCTGTTGTTG+CGG 0.571676 1_1:+34865607 Msa0019920:five_prime_UTR
TGCTACAATCATGGTTCTCG+GGG 0.572687 1_1:-34863718 Msa0019910:CDS
AGAAAGCTCCTCAAGGTGAA+AGG 0.572936 1_1:-34865471 Msa0019910:CDS
ACGAATTGTTAGAGATCCTA+GGG 0.574782 1_1:-34862562 Msa0019910:CDS
ATGGAATCAGAGAACAGGAA+TGG 0.580271 1_1:-34865565 Msa0019910:CDS
ACCTCGGAATGTGAAAGTGA+TGG 0.584506 1_1:+34865640 Msa0019920:five_prime_UTR
GGATTTAAGGGCCATAAATG+TGG 0.585970 1_1:-34861070 Msa0019910:CDS
ACTGTCAAGTGCAAGGGAGT+CGG 0.589251 1_1:+34860858 None:intergenic
CATGCAAAACAAAGCAAGGA+GGG 0.590205 1_1:-34861162 Msa0019910:CDS
AAAGTGATGGATCGTTGGCT+TGG 0.591295 1_1:+34865653 Msa0019920:five_prime_UTR
AGAAAAGGAAATGTGTTCAG+TGG 0.592415 1_1:+34866032 Msa0019920:CDS
TCTGATGGACAGTGTTGGAA+TGG 0.594661 1_1:-34863762 Msa0019910:intron
ACAACAGCCTCTGTCGGTGT+CGG 0.604088 1_1:-34865602 Msa0019910:CDS
AATGCAACTTACCCAGCCCT+AGG 0.607693 1_1:+34862546 None:intergenic
ACAGACTGTGAAAGCTATGA+AGG 0.608035 1_1:-34862825 Msa0019910:intron
TTAGGTGTGATAAACTTGAG+AGG 0.608700 1_1:-34866108 Msa0019910:five_prime_UTR
GAAGCTTAACACTGTTTGTG+AGG 0.608702 1_1:-34865416 Msa0019910:CDS
TCCGGTTCCATAGGATCGGG+AGG 0.609370 1_1:+34863639 None:intergenic
CGAATCTGATGATGAGGTGA+AGG 0.612241 1_1:-34861103 Msa0019910:CDS
GGACGAAGAGCTCCCCAGCT+CGG 0.613187 1_1:+34860505 None:intergenic
ATCGAAGATGAGTAATGGGA+AGG 0.613451 1_1:+34866002 Msa0019920:exon
GTAGAAACTCTGGTTCACTC+AGG 0.613460 1_1:-34862630 Msa0019910:CDS
CGCGATGATATACCTGATGG+AGG 0.619579 1_1:-34862863 Msa0019910:CDS
TCTTTGACTGTCAAGTGCAA+GGG 0.619715 1_1:+34860852 None:intergenic
ATATAGCAAGCAGCAAGAGA+TGG 0.620946 1_1:-34860409 Msa0019910:three_prime_UTR
TTATATTGTCATAACAAGTG+TGG 0.621991 1_1:-34862888 Msa0019910:CDS
ACCGCAACAACAGCCTCTGT+CGG 0.627541 1_1:-34865608 Msa0019910:CDS
TGAATGGACCCAACCCACCT+GGG 0.628085 1_1:+34865536 None:intergenic
AGTGTGAAAGTACAAGAGGA+AGG 0.630019 1_1:+34865682 Msa0019920:five_prime_UTR
AACAGGAATGGACCTTACCC+AGG 0.632582 1_1:-34865553 Msa0019910:CDS
AAGATCTCCTCGAAAATCAG+AGG 0.632820 1_1:+34862659 None:intergenic
GGAATGGACCTTACCCAGGT+GGG 0.634216 1_1:-34865549 Msa0019910:CDS
GACATCGCCGACACCGACAG+AGG 0.641555 1_1:+34865595 Msa0019920:five_prime_UTR
TTGAGACAGAAAGCTCCTCA+AGG 0.644524 1_1:-34865478 Msa0019910:CDS
GATGGACAGTGTTGGAATGG+AGG 0.645354 1_1:-34863759 Msa0019910:intron
ATGTGAAAGTGATGGATCGT+TGG 0.646000 1_1:+34865648 Msa0019920:five_prime_UTR
CCTTGGCGAATCTGATGATG+AGG 0.649893 1_1:-34861109 Msa0019910:CDS
TCGAAGTGTGAAAGTACAAG+AGG 0.650369 1_1:+34865678 Msa0019920:five_prime_UTR
CCTCATCATCAGATTCGCCA+AGG 0.652322 1_1:+34861109 None:intergenic
GACCGCGATGATATACCTGA+TGG 0.655366 1_1:-34862866 Msa0019910:CDS
GGAGCTCTTCGTCCAGACAA+TGG 0.655905 1_1:-34860496 Msa0019910:CDS
GCTTTCTGTCTCAACCACGC+AGG 0.658875 1_1:+34865487 None:intergenic
GGAACCGGAAAACACTGCCA+AGG 0.661410 1_1:-34863625 Msa0019910:CDS
ATATACCTGATGGAGGAAGT+GGG 0.662040 1_1:-34862856 Msa0019910:CDS
ACGATCTTCATACCGAGCTG+GGG 0.665611 1_1:-34860517 Msa0019910:CDS
ATAAACCTAATTGTTGACAA+GGG 0.680053 1_1:-34865921 Msa0019910:five_prime_UTR
TTGCGGTGAGACAACAACCT+CGG 0.687409 1_1:+34865624 Msa0019920:five_prime_UTR
AGGAATGGACCTTACCCAGG+TGG 0.689462 1_1:-34865550 Msa0019910:CDS
CTCCATCAGGTATATCATCG+CGG 0.692866 1_1:+34862864 None:intergenic
ACAGTGTCCAAATATTGGAG+AGG 0.693222 1_1:-34865389 Msa0019910:intron
ACAACATTGAGACAGTCAAG+CGG 0.695401 1_1:-34862590 Msa0019910:CDS
CCATGCAAAACAAAGCAAGG+AGG 0.698104 1_1:-34861163 Msa0019910:CDS
ATTGTGAAGAGAAAAGAACA+AGG 0.719470 1_1:+34865792 Msa0019920:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTGTAATTAATAC+TGG + chr1_1:34860336-34860355 None:intergenic 10.0%
!! ATTTACATTTCTTTAATATT+TGG - chr1_1:34861387-34861406 Msa0019910:intron 10.0%
!!! TACAAATTACTAAAATATTT+TGG + chr1_1:34863109-34863128 None:intergenic 10.0%
!! AAAGAAAAAAACAATTATTT+AGG + chr1_1:34863990-34864009 None:intergenic 10.0%
!! TATGTTAATTTATTTCAAAA+CGG + chr1_1:34864334-34864353 None:intergenic 10.0%
!! TATAAATTTACATTATTCTT+TGG + chr1_1:34864495-34864514 None:intergenic 10.0%
!! ATGATAATATATTAAATATG+AGG - chr1_1:34864620-34864639 Msa0019910:intron 10.0%
!!! AATTTTAGGAATATTAATAT+TGG + chr1_1:34864904-34864923 None:intergenic 10.0%
!! AATATTAATATTCCTAAAAT+TGG - chr1_1:34864903-34864922 Msa0019910:intron 10.0%
!! ATATTAATATTCCTAAAATT+GGG - chr1_1:34864904-34864923 Msa0019910:intron 10.0%
!!! TCTTTTTTTATTATTTGCTT+AGG + chr1_1:34860072-34860091 None:intergenic 15.0%
!! AATAAAAAAAGAAAACCATT+TGG - chr1_1:34860080-34860099 Msa0019910:three_prime_UTR 15.0%
!!! TTTTTTTTTTGTTGATGAAA+TGG - chr1_1:34860978-34860997 Msa0019910:intron 15.0%
!!! TTTTTTTTTGTTGATGAAAT+GGG - chr1_1:34860979-34860998 Msa0019910:intron 15.0%
!!! AAATTTTTGTTTTTGATAGA+TGG - chr1_1:34861009-34861028 Msa0019910:intron 15.0%
!!! AATTTTTGTTTTTGATAGAT+GGG - chr1_1:34861010-34861029 Msa0019910:intron 15.0%
!! AAAAAACTAATAGCATAAAA+GGG + chr1_1:34861106-34861125 None:intergenic 15.0%
!! TAAAAAACTAATAGCATAAA+AGG + chr1_1:34861107-34861126 None:intergenic 15.0%
!! TAATATTTGGTTATATCTTA+CGG - chr1_1:34861400-34861419 Msa0019910:intron 15.0%
!! GTATTTATCAAAAATAATGT+AGG + chr1_1:34861446-34861465 None:intergenic 15.0%
!!! AATGTATTTTGTCTAAAATT+TGG + chr1_1:34861526-34861545 None:intergenic 15.0%
!! ATTATATATTTCACATTTAG+TGG - chr1_1:34862058-34862077 Msa0019910:intron 15.0%
!! AAATAAGAAATTGTGTTAAA+TGG + chr1_1:34862268-34862287 None:intergenic 15.0%
!! GATTAATTGATATTGATATT+GGG - chr1_1:34862371-34862390 Msa0019910:intron 15.0%
!! ATTACAATAAAAATCTAACA+TGG - chr1_1:34863066-34863085 Msa0019910:intron 15.0%
!! TATTAATATTCCTAAAATTG+GGG - chr1_1:34864905-34864924 Msa0019910:intron 15.0%
!!! TTTTTTGTCAATTATATGAA+CGG - chr1_1:34866001-34866020 Msa0019910:five_prime_UTR 15.0%
!!! TATTCCCTAATTTTTTTTTT+TGG - chr1_1:34866052-34866071 Msa0019910:five_prime_UTR 15.0%
!! TCTACCAAAAAAAAAAATTA+GGG + chr1_1:34866059-34866078 Msa0019920:CDS 15.0%
!! TTCTACCAAAAAAAAAAATT+AGG + chr1_1:34866060-34866079 Msa0019920:CDS 15.0%
!! CAATATGTGATAATAAATTA+GGG + chr1_1:34866091-34866110 Msa0019920:CDS 15.0%
!! ACAATATGTGATAATAAATT+AGG + chr1_1:34866092-34866111 Msa0019920:CDS 15.0%
!! ACAAAAAAAAAAATTAGACA+GGG + chr1_1:34866147-34866166 Msa0019920:intron 15.0%
!! AACAAAAAAAAAAATTAGAC+AGG + chr1_1:34866148-34866167 Msa0019920:intron 15.0%
!!! TTTTTATTATTTGCTTAGGT+GGG + chr1_1:34860068-34860087 None:intergenic 20.0%
!!! TTTTTTATTATTTGCTTAGG+TGG + chr1_1:34860069-34860088 None:intergenic 20.0%
!! TTATAAAAAACAGAGAAGAA+AGG + chr1_1:34860416-34860435 None:intergenic 20.0%
!!! GAAAATTTGATTTTTAACCA+AGG - chr1_1:34861039-34861058 Msa0019910:intron 20.0%
!!! CTATTAGTTTTTTATGTGAT+GGG - chr1_1:34861113-34861132 Msa0019910:CDS 20.0%
!! TTAAATGTAAAAGCAAATAG+TGG - chr1_1:34861173-34861192 Msa0019910:CDS 20.0%
!! AATATTTGGTTATATCTTAC+GGG - chr1_1:34861401-34861420 Msa0019910:intron 20.0%
!! GGATTAATTGATATTGATAT+TGG - chr1_1:34862370-34862389 Msa0019910:intron 20.0%
!! AACAAAAAATTGTCTAATCA+TGG + chr1_1:34862407-34862426 None:intergenic 20.0%
!! GATAGTAGATGAATAAATAA+AGG - chr1_1:34864214-34864233 Msa0019910:intron 20.0%
!! ATAAATTAACATACATGTAG+CGG - chr1_1:34864341-34864360 Msa0019910:intron 20.0%
!!! TCCAATATTTTTTACATTAG+CGG - chr1_1:34864372-34864391 Msa0019910:intron 20.0%
!! CTGAAATAAAAAAATTCTCA+TGG + chr1_1:34864470-34864489 None:intergenic 20.0%
!! ATATATGAAATTGCAGAATA+AGG + chr1_1:34864850-34864869 None:intergenic 20.0%
!! AATATTAATATTGGAGAATG+AGG + chr1_1:34864895-34864914 None:intergenic 20.0%
!! ATTAATTCTCTACTAATATG+AGG - chr1_1:34864987-34865006 Msa0019910:intron 20.0%
!! TTAATTCTCTACTAATATGA+GGG - chr1_1:34864988-34865007 Msa0019910:intron 20.0%
!!! ATTTTCAAGTTCATTTTCTA+AGG + chr1_1:34865298-34865317 None:intergenic 20.0%
!! CATATAATTGACAAAAAATG+TGG + chr1_1:34865999-34866018 Msa0019920:exon 20.0%
!! ATATATTGTTGTTGACCAAA+TGG + chr1_1:34860098-34860117 None:intergenic 25.0%
!! TTGAAAACGAAAACCTTTTT+AGG - chr1_1:34860171-34860190 Msa0019910:intron 25.0%
! TGTAATTAATACTGGTGAAA+AGG + chr1_1:34860328-34860347 None:intergenic 25.0%
! ATAAACCTAATTGTTGACAA+GGG - chr1_1:34860376-34860395 Msa0019910:three_prime_UTR 25.0%
!!! TCAGACAATTATTTTGTCTT+CGG - chr1_1:34860436-34860455 Msa0019910:exon 25.0%
!!! GTTTTGTGGTTTTATGAAAT+GGG + chr1_1:34860596-34860615 None:intergenic 25.0%
!!! GCTATTAGTTTTTTATGTGA+TGG - chr1_1:34861112-34861131 Msa0019910:CDS 25.0%
!!! TGTTTTGGTTTTCTTTTGAT+TGG + chr1_1:34861694-34861713 None:intergenic 25.0%
! ATATTAAGCAAAACCAATGT+AGG + chr1_1:34862001-34862020 None:intergenic 25.0%
! TATCAATATCAATTAATCCG+TGG + chr1_1:34862369-34862388 None:intergenic 25.0%
! TAAGTAATCAAACATGCTAA+AGG - chr1_1:34862448-34862467 Msa0019910:intron 25.0%
! AACACATTTATTCATGTGTA+GGG - chr1_1:34862779-34862798 Msa0019910:intron 25.0%
! TAGACCTTTACATAAACTAA+CGG - chr1_1:34863001-34863020 Msa0019910:intron 25.0%
! TTATATTGTCATAACAAGTG+TGG - chr1_1:34863409-34863428 Msa0019910:intron 25.0%
!! TTAAAGATGCATTTTACAGA+AGG - chr1_1:34863519-34863538 Msa0019910:intron 25.0%
! GAGTAAGTATCAACATTATA+GGG + chr1_1:34863804-34863823 None:intergenic 25.0%
! TGAGTAAGTATCAACATTAT+AGG + chr1_1:34863805-34863824 None:intergenic 25.0%
! ATAAAATTGAATGTCTTCAG+TGG - chr1_1:34863842-34863861 Msa0019910:intron 25.0%
!! AAAACAATTATTTAGGACAC+CGG + chr1_1:34863983-34864002 None:intergenic 25.0%
! GAAGCAAGAGATAAAAAAAT+TGG + chr1_1:34864096-34864115 None:intergenic 25.0%
! ATATGTAACTCTTGTATCTA+TGG + chr1_1:34864125-34864144 None:intergenic 25.0%
! TTGAGAAATGTTGATCAATT+AGG - chr1_1:34864148-34864167 Msa0019910:intron 25.0%
! TGAGAAATGTTGATCAATTA+GGG - chr1_1:34864149-34864168 Msa0019910:intron 25.0%
! ACCGCTAATGTAAAAAATAT+TGG + chr1_1:34864376-34864395 None:intergenic 25.0%
! TGAACTTACATCACTTTAAA+TGG - chr1_1:34864577-34864596 Msa0019910:intron 25.0%
!! TATCATATTCAATTTTCCAC+TGG - chr1_1:34864721-34864740 Msa0019910:intron 25.0%
! TAAAGATTTAGAAAATCCAG+TGG + chr1_1:34864740-34864759 None:intergenic 25.0%
! GGAGGAAATTTCATAATAAA+AGG - chr1_1:34864943-34864962 Msa0019910:intron 25.0%
!!! AACTTACATTCTGTTTTTGT+AGG - chr1_1:34865023-34865042 Msa0019910:intron 25.0%
! AACAAAATCTTCGATAATGT+TGG - chr1_1:34865164-34865183 Msa0019910:intron 25.0%
! ACAAAATCTTCGATAATGTT+GGG - chr1_1:34865165-34865184 Msa0019910:intron 25.0%
! AATTATATCACTCAACAATG+TGG + chr1_1:34865396-34865415 None:intergenic 25.0%
!! TTTGATTTCTGGAAAGAATA+TGG - chr1_1:34865487-34865506 Msa0019910:CDS 25.0%
! TAAGACATATACCAAAAGAA+GGG + chr1_1:34865590-34865609 Msa0019920:five_prime_UTR 25.0%
! ATAAGACATATACCAAAAGA+AGG + chr1_1:34865591-34865610 Msa0019920:five_prime_UTR 25.0%
! AAACAACAAATCTACCTAAA+TGG - chr1_1:34865640-34865659 Msa0019910:CDS 25.0%
! AATTCTTTACTGTGTGATTA+TGG - chr1_1:34865863-34865882 Msa0019910:five_prime_UTR 25.0%
CAAGTTTATCACACCTAAAA+AGG + chr1_1:34860187-34860206 None:intergenic 30.0%
TTGAATCGAAGATGAGTAAT+GGG + chr1_1:34860302-34860321 None:intergenic 30.0%
TTTGAATCGAAGATGAGTAA+TGG + chr1_1:34860303-34860322 None:intergenic 30.0%
CATAAACCTAATTGTTGACA+AGG - chr1_1:34860375-34860394 Msa0019910:three_prime_UTR 30.0%
! CATTTTGCAGTTGTTAACTT+TGG + chr1_1:34860467-34860486 None:intergenic 30.0%
ATTGTGAAGAGAAAAGAACA+AGG + chr1_1:34860508-34860527 None:intergenic 30.0%
TGAAACATTGTGACAACTTT+GGG + chr1_1:34860531-34860550 None:intergenic 30.0%
ATGAAACATTGTGACAACTT+TGG + chr1_1:34860532-34860551 None:intergenic 30.0%
!!! GGTTTTGTGGTTTTATGAAA+TGG + chr1_1:34860597-34860616 None:intergenic 30.0%
AATAGAACCTCTCCAATATT+TGG + chr1_1:34860918-34860937 None:intergenic 30.0%
ATCAAGTAATTTGGAGAAAC+AGG - chr1_1:34861142-34861161 Msa0019910:CDS 30.0%
! TTTTTGATAAATACTCCCTC+CGG - chr1_1:34861452-34861471 Msa0019910:intron 30.0%
! CTATTTCTTGTATATAGTGC+CGG + chr1_1:34861474-34861493 None:intergenic 30.0%
CTTTCTCTTATGTATAGAAC+CGG - chr1_1:34861563-34861582 Msa0019910:intron 30.0%
CATAAATTCACTACTACTTC+CGG + chr1_1:34861585-34861604 None:intergenic 30.0%
!! TTTTCTTTTGATTGGACTTG+TGG + chr1_1:34861686-34861705 None:intergenic 30.0%
TTAATACAACTACAAGCAGA+CGG + chr1_1:34862345-34862364 None:intergenic 30.0%
CTTGTAGTTGTATTAAACCA+CGG - chr1_1:34862349-34862368 Msa0019910:intron 30.0%
!!! CAATTTTTTGTTGAGATCCA+TGG - chr1_1:34862415-34862434 Msa0019910:intron 30.0%
TTACTTATTGAGTCTAACCA+TGG + chr1_1:34862435-34862454 None:intergenic 30.0%
ATGATTTAACAATCTGCACA+CGG - chr1_1:34862754-34862773 Msa0019910:intron 30.0%
CAACACATTTATTCATGTGT+AGG - chr1_1:34862778-34862797 Msa0019910:intron 30.0%
ACACATTTATTCATGTGTAG+GGG - chr1_1:34862780-34862799 Msa0019910:intron 30.0%
! ATTTAAGACAAAGTTTGGGT+TGG + chr1_1:34862816-34862835 None:intergenic 30.0%
AACCCAAACTTTGTCTTAAA+TGG - chr1_1:34862815-34862834 Msa0019910:intron 30.0%
ACCCAAACTTTGTCTTAAAT+GGG - chr1_1:34862816-34862835 Msa0019910:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG + chr1_1:34862908-34862927 None:intergenic 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG + chr1_1:34862909-34862928 None:intergenic 30.0%
AGACCTTTACATAAACTAAC+GGG - chr1_1:34863002-34863021 Msa0019910:intron 30.0%
GAATGAAACAAAAACCATCA+AGG + chr1_1:34863176-34863195 None:intergenic 30.0%
GCAAGTAGAATTTCATATAG+CGG + chr1_1:34863246-34863265 None:intergenic 30.0%
ATTAGGTGAGATCAGTTATA+TGG + chr1_1:34863313-34863332 None:intergenic 30.0%
TGATCTCACCTAATGAAATA+AGG - chr1_1:34863319-34863338 Msa0019910:intron 30.0%
AACTTGCAAGTAAGTAATAG+GGG + chr1_1:34863370-34863389 None:intergenic 30.0%
GAACTTGCAAGTAAGTAATA+GGG + chr1_1:34863371-34863390 None:intergenic 30.0%
GAATAAATAACTGTGAAGCA+CGG - chr1_1:34863873-34863892 Msa0019910:intron 30.0%
GAGAAATGTTGATCAATTAG+GGG - chr1_1:34864150-34864169 Msa0019910:intron 30.0%
ACTTATTTATCCATGAAGCA+TGG + chr1_1:34864431-34864450 None:intergenic 30.0%
TGCTTCATGGATAAATAAGT+AGG - chr1_1:34864431-34864450 Msa0019910:intron 30.0%
ATTAATATTGGAGAATGAGG+TGG + chr1_1:34864892-34864911 None:intergenic 30.0%
! TAATAAAAGGCCATTGATTG+TGG - chr1_1:34864956-34864975 Msa0019910:intron 30.0%
ATTGAACAAACCACAATCAA+TGG + chr1_1:34864969-34864988 None:intergenic 30.0%
AACATATGACACATGAGAAA+TGG + chr1_1:34865082-34865101 None:intergenic 30.0%
!! AGGAAACAATGATGGATTTA+AGG - chr1_1:34865214-34865233 Msa0019910:intron 30.0%
!! GGAAACAATGATGGATTTAA+GGG - chr1_1:34865215-34865234 Msa0019910:intron 30.0%
AGTCAGAATATCCACATTTA+TGG + chr1_1:34865241-34865260 None:intergenic 30.0%
AAAGAATATGGAGAGTCTAT+TGG - chr1_1:34865499-34865518 Msa0019910:CDS 30.0%
!!! GGGTGCAATGATATTTTAAT+GGG + chr1_1:34865569-34865588 Msa0019920:five_prime_UTR 30.0%
AAGACATATACCAAAAGAAG+GGG + chr1_1:34865589-34865608 Msa0019920:five_prime_UTR 30.0%
!!! CACATTGTTTTAGTCCATTT+AGG + chr1_1:34865657-34865676 Msa0019920:five_prime_UTR 30.0%
ATATCTTTGCTCCAAAGAAA+TGG + chr1_1:34865976-34865995 Msa0019920:five_prime_UTR 30.0%
TTAGGTGTGATAAACTTGAG+AGG - chr1_1:34860189-34860208 Msa0019910:intron 35.0%
TCAGTGGTAGTTGAAAAAGT+GGG + chr1_1:34860252-34860271 None:intergenic 35.0%
TTCAGTGGTAGTTGAAAAAG+TGG + chr1_1:34860253-34860272 None:intergenic 35.0%
AGAAAAGGAAATGTGTTCAG+TGG + chr1_1:34860268-34860287 None:intergenic 35.0%
!! GACAATTATTTTGTCTTCGG+AGG - chr1_1:34860439-34860458 Msa0019910:exon 35.0%
TGAAGAGAAAAGAACAAGGT+TGG + chr1_1:34860504-34860523 None:intergenic 35.0%
!! GGTTTTATGAAATGGGTTTG+AGG + chr1_1:34860589-34860608 None:intergenic 35.0%
TCAAAATGAAGCAACTACCT+TGG + chr1_1:34861059-34861078 None:intergenic 35.0%
CGGAAGTAGTAGTGAATTTA+TGG - chr1_1:34861583-34861602 Msa0019910:intron 35.0%
TGTATAACCTGCATAACACT+AGG - chr1_1:34861730-34861749 Msa0019910:intron 35.0%
AATCTTGCAGTGTACTATGA+TGG + chr1_1:34861854-34861873 None:intergenic 35.0%
GTAGGCTCTCTATGTTAAAT+TGG + chr1_1:34861983-34862002 None:intergenic 35.0%
TTAACATAGAGAGCCTACAT+TGG - chr1_1:34861985-34862004 Msa0019910:intron 35.0%
! TGCTATAGTGTAGTGGAATT+TGG - chr1_1:34862089-34862108 Msa0019910:intron 35.0%
TTGTCAAATAGCAGATGTAG+TGG - chr1_1:34862170-34862189 Msa0019910:intron 35.0%
TTTCTGTCCTGTTCTTCATA+AGG - chr1_1:34862295-34862314 Msa0019910:intron 35.0%
TAATACAACTACAAGCAGAC+GGG + chr1_1:34862344-34862363 None:intergenic 35.0%
TATTGCAACTGCTACAATCA+TGG - chr1_1:34862570-34862589 Msa0019910:CDS 35.0%
! GCCCATTTAAGACAAAGTTT+GGG + chr1_1:34862820-34862839 None:intergenic 35.0%
CTTACAAGATCCTTGAGTTT+GGG + chr1_1:34862854-34862873 None:intergenic 35.0%
TCTTACAAGATCCTTGAGTT+TGG + chr1_1:34862855-34862874 None:intergenic 35.0%
! TCTAAGCACCCTTTTATTAG+AGG - chr1_1:34862912-34862931 Msa0019910:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+GGG - chr1_1:34862919-34862938 Msa0019910:intron 35.0%
ACCCTTTGCCTCTAATAAAA+GGG + chr1_1:34862923-34862942 None:intergenic 35.0%
! ATGCCCGTTAGTTTATGTAA+AGG + chr1_1:34863008-34863027 None:intergenic 35.0%
! ATGCTTTTGAATAGGTCAAC+AGG - chr1_1:34863028-34863047 Msa0019910:intron 35.0%
! CTCTAAAGAAATCACCTTGA+TGG - chr1_1:34863159-34863178 Msa0019910:intron 35.0%
GGAATTAGATGCGAGAAAAA+TGG + chr1_1:34863268-34863287 None:intergenic 35.0%
CCAAATGAATGCCATTAACA+GGG + chr1_1:34863289-34863308 None:intergenic 35.0%
ACCAAATGAATGCCATTAAC+AGG + chr1_1:34863290-34863309 None:intergenic 35.0%
TCACCTAATGAAATAAGGCT+TGG - chr1_1:34863324-34863343 Msa0019910:intron 35.0%
!! CAACCAAGCCTTATTTCATT+AGG + chr1_1:34863330-34863349 None:intergenic 35.0%
GGAACTTGCAAGTAAGTAAT+AGG + chr1_1:34863372-34863391 None:intergenic 35.0%
ATAATCCACGCTGAAAATTC+AGG + chr1_1:34863393-34863412 None:intergenic 35.0%
GAATATCAAACCTGAGATCA+TGG - chr1_1:34863603-34863622 Msa0019910:intron 35.0%
! TGTTTAACCTCTGATTTTCG+AGG - chr1_1:34863631-34863650 Msa0019910:CDS 35.0%
!! TGATTTTCGAGGAGATCTTA+AGG - chr1_1:34863642-34863661 Msa0019910:CDS 35.0%
TAGGATCTCTAACAATTCGT+TGG + chr1_1:34863735-34863754 None:intergenic 35.0%
AACGAATTGTTAGAGATCCT+AGG - chr1_1:34863734-34863753 Msa0019910:CDS 35.0%
ACGAATTGTTAGAGATCCTA+GGG - chr1_1:34863735-34863754 Msa0019910:CDS 35.0%
TCTTTGTTCCCTTGTTAAGT+AGG - chr1_1:34864765-34864784 Msa0019910:intron 35.0%
CTTTGTTCCCTTGTTAAGTA+GGG - chr1_1:34864766-34864785 Msa0019910:intron 35.0%
TATGCTTCCCTACTTAACAA+GGG + chr1_1:34864776-34864795 None:intergenic 35.0%
ATATGCTTCCCTACTTAACA+AGG + chr1_1:34864777-34864796 None:intergenic 35.0%
! TCTACTAATATGAGGGTACA+TGG - chr1_1:34864995-34865014 Msa0019910:intron 35.0%
AAACCATGCAAAACAAAGCA+AGG - chr1_1:34865131-34865150 Msa0019910:intron 35.0%
AATGTGGATATTCTGACTCT+TGG - chr1_1:34865243-34865262 Msa0019910:intron 35.0%
GAACTTGAAAATTCAGTCCA+TGG - chr1_1:34865306-34865325 Msa0019910:intron 35.0%
ATTAGCATCATCTGTAACCA+TGG + chr1_1:34865326-34865345 None:intergenic 35.0%
TTCCAGAAATCAAACTTCTC+AGG + chr1_1:34865481-34865500 None:intergenic 35.0%
!! GGGGTGCAATGATATTTTAA+TGG + chr1_1:34865570-34865589 Msa0019920:five_prime_UTR 35.0%
CAACACAAATATAGTGCTCA+CGG + chr1_1:34865753-34865772 Msa0019920:five_prime_UTR 35.0%
AGAAAGATGCTTAGCTATAC+AGG - chr1_1:34865944-34865963 Msa0019910:five_prime_UTR 35.0%
GAGAGGATATCTAGATAAGC+AGG - chr1_1:34860206-34860225 Msa0019910:three_prime_UTR 40.0%
TGGGAAGGAAGAGAAAGAAA+AGG + chr1_1:34860283-34860302 None:intergenic 40.0%
! ATCGAAGATGAGTAATGGGA+AGG + chr1_1:34860298-34860317 None:intergenic 40.0%
! ATGAAATGGGTTTGAGGAGA+AGG + chr1_1:34860583-34860602 None:intergenic 40.0%
! AGTACAAGAGGAAGGTTTTG+TGG + chr1_1:34860610-34860629 None:intergenic 40.0%
! AGTGTGAAAGTACAAGAGGA+AGG + chr1_1:34860618-34860637 None:intergenic 40.0%
! TCGAAGTGTGAAAGTACAAG+AGG + chr1_1:34860622-34860641 None:intergenic 40.0%
!! ATGTGAAAGTGATGGATCGT+TGG + chr1_1:34860652-34860671 None:intergenic 40.0%
ATGGAATCAGAGAACAGGAA+TGG - chr1_1:34860732-34860751 Msa0019910:intron 40.0%
!!! ACGCAGGTTTTTTCACATTC+GGG + chr1_1:34860797-34860816 None:intergenic 40.0%
!!! CACGCAGGTTTTTTCACATT+CGG + chr1_1:34860798-34860817 None:intergenic 40.0%
TTCGAAAACCTTTCACCTTG+AGG + chr1_1:34860837-34860856 None:intergenic 40.0%
GAAGCTTAACACTGTTTGTG+AGG - chr1_1:34860881-34860900 Msa0019910:intron 40.0%
GAAGCACAGTGTCCAAATAT+TGG - chr1_1:34860903-34860922 Msa0019910:intron 40.0%
ACAGTGTCCAAATATTGGAG+AGG - chr1_1:34860908-34860927 Msa0019910:intron 40.0%
GGGTTGCTCATCAAGTAATT+TGG - chr1_1:34861133-34861152 Msa0019910:CDS 40.0%
TGACACAACATGACACATGT+TGG + chr1_1:34861252-34861271 None:intergenic 40.0%
CTATGTGTCAGTGTTGTGTT+TGG - chr1_1:34861336-34861355 Msa0019910:intron 40.0%
! TTCTTGTATATAGTGCCGGA+GGG + chr1_1:34861470-34861489 None:intergenic 40.0%
! TTTCTTGTATATAGTGCCGG+AGG + chr1_1:34861471-34861490 None:intergenic 40.0%
TGAAAGCCTTCATAGAAGGT+GGG + chr1_1:34861649-34861668 None:intergenic 40.0%
CTTCTATGAAGGCTTTCAGA+GGG - chr1_1:34861651-34861670 Msa0019910:intron 40.0%
TTATACATGTGTCAGGGTGT+AGG + chr1_1:34861717-34861736 None:intergenic 40.0%
TGCAGGTTATACATGTGTCA+GGG + chr1_1:34861723-34861742 None:intergenic 40.0%
ATGCAGGTTATACATGTGTC+AGG + chr1_1:34861724-34861743 None:intergenic 40.0%
! CTTTTCTCCTAGTGTTATGC+AGG + chr1_1:34861740-34861759 None:intergenic 40.0%
CATGCATGTCAGTAGAGAAA+AGG - chr1_1:34861796-34861815 Msa0019910:intron 40.0%
! AGTGTACTATGATGGAGGTT+GGG + chr1_1:34861846-34861865 None:intergenic 40.0%
AGTGCAAGATCAGAACAGAT+CGG - chr1_1:34861922-34861941 Msa0019910:intron 40.0%
GCTATACTGCTATAGTGTAG+TGG - chr1_1:34862082-34862101 Msa0019910:intron 40.0%
! GTAGTGGAATTTGGATACAC+CGG - chr1_1:34862098-34862117 Msa0019910:intron 40.0%
AGCATATCGTGAAACAGTAG+CGG + chr1_1:34862135-34862154 None:intergenic 40.0%
CTGCTAGACAATAGTGCTAA+TGG + chr1_1:34862198-34862217 None:intergenic 40.0%
TGTCCTGTTCTTCATAAGGT+TGG - chr1_1:34862299-34862318 Msa0019910:intron 40.0%
TCACCAACCTTATGAAGAAC+AGG + chr1_1:34862305-34862324 None:intergenic 40.0%
TTGAGACCTTTACCTTCTGA+TGG - chr1_1:34862520-34862539 Msa0019910:intron 40.0%
ACTGCTACAATCATGGTTCT+CGG - chr1_1:34862577-34862596 Msa0019910:CDS 40.0%
! GGCCCATTTAAGACAAAGTT+TGG + chr1_1:34862821-34862840 None:intergenic 40.0%
TTGAGTTTGGGAAACATGTC+AGG + chr1_1:34862842-34862861 None:intergenic 40.0%
TGACATGTTTCCCAAACTCA+AGG - chr1_1:34862841-34862860 Msa0019910:CDS 40.0%
! CACCCTTTTATTAGAGGCAA+AGG - chr1_1:34862918-34862937 Msa0019910:intron 40.0%
CACCCTTTGCCTCTAATAAA+AGG + chr1_1:34862924-34862943 None:intergenic 40.0%
!! GCAAAGGGTGCTTACATATA+GGG - chr1_1:34862934-34862953 Msa0019910:intron 40.0%
! ACGGGCATATGCTTTTGAAT+AGG - chr1_1:34863020-34863039 Msa0019910:intron 40.0%
CGCATCTAATTCCCTGTTAA+TGG - chr1_1:34863275-34863294 Msa0019910:intron 40.0%
CCCTGTTAATGGCATTCATT+TGG - chr1_1:34863286-34863305 Msa0019910:intron 40.0%
! AAGTTCCTGAATTTTCAGCG+TGG - chr1_1:34863385-34863404 Msa0019910:intron 40.0%
ATATACCTGATGGAGGAAGT+GGG - chr1_1:34863441-34863460 Msa0019910:intron 40.0%
ACAGACTGTGAAAGCTATGA+AGG - chr1_1:34863472-34863491 Msa0019910:intron 40.0%
AAACACTCAACCATGATCTC+AGG + chr1_1:34863616-34863635 None:intergenic 40.0%
AAGATCTCCTCGAAAATCAG+AGG + chr1_1:34863641-34863660 None:intergenic 40.0%
TCTTAAGGCTGTAGAAACTC+TGG - chr1_1:34863657-34863676 Msa0019910:CDS 40.0%
ACAACATTGAGACAGTCAAG+CGG - chr1_1:34863707-34863726 Msa0019910:CDS 40.0%
!!! GCTGATTCAGCTACTTTTGT+CGG - chr1_1:34863774-34863793 Msa0019910:intron 40.0%
TACTTCAACACTCCTACGAT+CGG - chr1_1:34864009-34864028 Msa0019910:intron 40.0%
ACTCTTGTATCTATGGTGTG+CGG + chr1_1:34864118-34864137 None:intergenic 40.0%
TAACATACATGTAGCGGTGT+CGG - chr1_1:34864347-34864366 Msa0019910:intron 40.0%
ATTCCTAAAATTGGGGACAG+AGG - chr1_1:34864912-34864931 Msa0019910:intron 40.0%
! TTTCCTCTGTCCCCAATTTT+AGG + chr1_1:34864918-34864937 None:intergenic 40.0%
CTCATGTGTCATATGTTTGC+AGG - chr1_1:34865085-34865104 Msa0019910:intron 40.0%
CATGCAAAACAAAGCAAGGA+GGG - chr1_1:34865135-34865154 Msa0019910:intron 40.0%
TGAGGTGAAGGAAACAATGA+TGG - chr1_1:34865206-34865225 Msa0019910:intron 40.0%
GGATTTAAGGGCCATAAATG+TGG - chr1_1:34865227-34865246 Msa0019910:intron 40.0%
TCTTTGACTGTCAAGTGCAA+GGG + chr1_1:34865448-34865467 None:intergenic 40.0%
TCTGTTAAGAGCTTACCAGT+GGG + chr1_1:34865546-34865565 None:intergenic 40.0%
! TATCATTGCACCCCTTCTTT+TGG - chr1_1:34865576-34865595 Msa0019910:CDS 40.0%
TGTACCTCTAACTGTCTACT+TGG - chr1_1:34865680-34865699 Msa0019910:CDS 40.0%
CTATCCAAGTAGACAGTTAG+AGG + chr1_1:34865687-34865706 Msa0019920:five_prime_UTR 40.0%
GCACTATATTTGTGTTGTGC+AGG - chr1_1:34865756-34865775 Msa0019910:CDS 40.0%
CACTTTCTCTTACCATTGTC+TGG + chr1_1:34865816-34865835 Msa0019920:five_prime_UTR 40.0%
CAATGATCCATCTGCATTCT+TGG + chr1_1:34865839-34865858 Msa0019920:five_prime_UTR 40.0%
ATATAGCAAGCAGCAAGAGA+TGG - chr1_1:34865888-34865907 Msa0019910:five_prime_UTR 40.0%
ACAGGTGTCTTCCATTTCTT+TGG - chr1_1:34865962-34865981 Msa0019910:five_prime_UTR 40.0%
GTGGTAGTTGAAAAAGTGGG+AGG + chr1_1:34860249-34860268 None:intergenic 45.0%
CTCTGCCCTTGTCAACAATT+AGG + chr1_1:34860384-34860403 None:intergenic 45.0%
GAGGAGAAGGAGAAAGAACA+AGG + chr1_1:34860570-34860589 None:intergenic 45.0%
!! AAAGTGATGGATCGTTGGCT+TGG + chr1_1:34860647-34860666 None:intergenic 45.0%
TCCATCACTTTCACATTCCG+AGG - chr1_1:34860656-34860675 Msa0019910:intron 45.0%
ACCTCGGAATGTGAAAGTGA+TGG + chr1_1:34860660-34860679 None:intergenic 45.0%
AGCTGATGGAATCAGAGAAC+AGG - chr1_1:34860727-34860746 Msa0019910:intron 45.0%
CGAATGTGAAAAAACCTGCG+TGG - chr1_1:34860796-34860815 Msa0019910:CDS 45.0%
TTGAGACAGAAAGCTCCTCA+AGG - chr1_1:34860819-34860838 Msa0019910:CDS 45.0%
AGAAAGCTCCTCAAGGTGAA+AGG - chr1_1:34860826-34860845 Msa0019910:CDS 45.0%
GTCATGTTGTGTCAGTGTCA+TGG - chr1_1:34861258-34861277 Msa0019910:intron 45.0%
TGTGTCAGTGTTGTGTTTGG+TGG - chr1_1:34861339-34861358 Msa0019910:intron 45.0%
ACTCTACCCACCTTCTATGA+AGG - chr1_1:34861640-34861659 Msa0019910:intron 45.0%
CTGAAAGCCTTCATAGAAGG+TGG + chr1_1:34861650-34861669 None:intergenic 45.0%
! CCTCTGAAAGCCTTCATAGA+AGG + chr1_1:34861653-34861672 None:intergenic 45.0%
CCTTCTATGAAGGCTTTCAG+AGG - chr1_1:34861650-34861669 Msa0019910:intron 45.0%
TGTCTGTATAGGTGTGGTGA+GGG + chr1_1:34861770-34861789 None:intergenic 45.0%
TTGTCTGTATAGGTGTGGTG+AGG + chr1_1:34861771-34861790 None:intergenic 45.0%
CGTGATTGTCTGTATAGGTG+TGG + chr1_1:34861776-34861795 None:intergenic 45.0%
GCATGCGTGATTGTCTGTAT+AGG + chr1_1:34861781-34861800 None:intergenic 45.0%
! CAGTGTACTATGATGGAGGT+TGG + chr1_1:34861847-34861866 None:intergenic 45.0%
CTTGCAGTGTACTATGATGG+AGG + chr1_1:34861851-34861870 None:intergenic 45.0%
! GGAGTGTGTTGGCGTATATT+AGG + chr1_1:34861877-34861896 None:intergenic 45.0%
! AGCTCTACATAGGAGTGTGT+TGG + chr1_1:34861888-34861907 None:intergenic 45.0%
! GTTCTGATCTTGCACTGATG+CGG + chr1_1:34861918-34861937 None:intergenic 45.0%
! TAAGTCCAGCTTGCTTTCAC+TGG + chr1_1:34861948-34861967 None:intergenic 45.0%
AGTAGCGGTGTATCAGATTC+CGG + chr1_1:34862120-34862139 None:intergenic 45.0%
CACTGTCCATCAGAAGGTAA+AGG + chr1_1:34862529-34862548 None:intergenic 45.0%
! TACCTTCTGATGGACAGTGT+TGG - chr1_1:34862530-34862549 Msa0019910:intron 45.0%
TTCCAACACTGTCCATCAGA+AGG + chr1_1:34862535-34862554 None:intergenic 45.0%
! TCTGATGGACAGTGTTGGAA+TGG - chr1_1:34862535-34862554 Msa0019910:intron 45.0%
CTGCTACAATCATGGTTCTC+GGG - chr1_1:34862578-34862597 Msa0019910:CDS 45.0%
TGCTACAATCATGGTTCTCG+GGG - chr1_1:34862579-34862598 Msa0019910:CDS 45.0%
! TTTTCCGGTTCCATAGGATC+GGG + chr1_1:34862664-34862683 None:intergenic 45.0%
! GTTTTCCGGTTCCATAGGAT+CGG + chr1_1:34862665-34862684 None:intergenic 45.0%
TGCTTAGATATAGGGACGGA+GGG + chr1_1:34862900-34862919 None:intergenic 45.0%
! AGGGTGCTTAGATATAGGGA+CGG + chr1_1:34862904-34862923 None:intergenic 45.0%
!! GGCAAAGGGTGCTTACATAT+AGG - chr1_1:34862933-34862952 Msa0019910:intron 45.0%
! AGGGTGCTTACATATAGGGA+CGG - chr1_1:34862938-34862957 Msa0019910:intron 45.0%
CTCCATCAGGTATATCATCG+CGG + chr1_1:34863436-34863455 None:intergenic 45.0%
GATATACCTGATGGAGGAAG+TGG - chr1_1:34863440-34863459 Msa0019910:intron 45.0%
! GTAGAAACTCTGGTTCACTC+AGG - chr1_1:34863667-34863686 Msa0019910:CDS 45.0%
ATTGTTAGAGATCCTAGGGC+TGG - chr1_1:34863739-34863758 Msa0019910:CDS 45.0%
TTGTTAGAGATCCTAGGGCT+GGG - chr1_1:34863740-34863759 Msa0019910:CDS 45.0%
! TATGGGCGTCATAGAAGTGT+CGG + chr1_1:34863946-34863965 None:intergenic 45.0%
TTTGTCTTAGTCGTCCGACA+CGG + chr1_1:34864065-34864084 None:intergenic 45.0%
ATATTGGAGAATGAGGTGGC+AGG + chr1_1:34864888-34864907 None:intergenic 45.0%
!!! CCTCCTTGCTTTGTTTTGCA+TGG + chr1_1:34865137-34865156 None:intergenic 45.0%
CCATGCAAAACAAAGCAAGG+AGG - chr1_1:34865134-34865153 Msa0019910:intron 45.0%
TCTTCGATAATGTTGGGCCT+TGG - chr1_1:34865171-34865190 Msa0019910:intron 45.0%
! CGAATCTGATGATGAGGTGA+AGG - chr1_1:34865194-34865213 Msa0019910:intron 45.0%
GACTCTTGGTCAGTATTTGC+AGG - chr1_1:34865257-34865276 Msa0019910:intron 45.0%
CTCTTTGACTGTCAAGTGCA+AGG + chr1_1:34865449-34865468 None:intergenic 45.0%
! CGCCTGAGAAGTTTGATTTC+TGG - chr1_1:34865476-34865495 Msa0019910:CDS 45.0%
! GGTTTTCGTTATGTAGCCAG+CGG - chr1_1:34865520-34865539 Msa0019910:CDS 45.0%
GTCTGTTAAGAGCTTACCAG+TGG + chr1_1:34865547-34865566 None:intergenic 45.0%
TACGATCTTCATACCGAGCT+GGG - chr1_1:34865779-34865798 Msa0019910:five_prime_UTR 45.0%
!! GAAAGTGCCAAGAATGCAGA+TGG - chr1_1:34865829-34865848 Msa0019910:five_prime_UTR 45.0%
TTGCGGTGAGACAACAACCT+CGG + chr1_1:34860676-34860695 None:intergenic 50.0%
AACAGGAATGGACCTTACCC+AGG - chr1_1:34860744-34860763 Msa0019910:intron 50.0%
TTCGGGTCTCTTCCTGTGAA+TGG + chr1_1:34860780-34860799 None:intergenic 50.0%
ATGTAGGCTCACTATGTCGC+TGG + chr1_1:34861430-34861449 None:intergenic 50.0%
! GTGTCAGGGTGTAGGTGTTT+TGG + chr1_1:34861709-34861728 None:intergenic 50.0%
CGGATGTCTCAGCTCTACAT+AGG + chr1_1:34861898-34861917 None:intergenic 50.0%
! GATGGACAGTGTTGGAATGG+AGG - chr1_1:34862538-34862557 Msa0019910:intron 50.0%
TGTTGGAATGGAGGCGATGA+TGG - chr1_1:34862547-34862566 Msa0019910:intron 50.0%
! GCAGTGTTTTCCGGTTCCAT+AGG + chr1_1:34862670-34862689 None:intergenic 50.0%
!! ATGGCCTTGGCAGTGTTTTC+CGG + chr1_1:34862679-34862698 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG + chr1_1:34862901-34862920 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG - chr1_1:34862941-34862960 Msa0019910:intron 50.0%
GACCGCGATGATATACCTGA+TGG - chr1_1:34863431-34863450 Msa0019910:intron 50.0%
CGCGATGATATACCTGATGG+AGG - chr1_1:34863434-34863453 Msa0019910:intron 50.0%
AAATGCCCACTTCCTCCATC+AGG + chr1_1:34863449-34863468 None:intergenic 50.0%
AATGCAACTTACCCAGCCCT+AGG + chr1_1:34863754-34863773 None:intergenic 50.0%
CGGTTTGACACGTGTCGTAT+GGG + chr1_1:34863963-34863982 None:intergenic 50.0%
CCATACGACACGTGTCAAAC+CGG - chr1_1:34863961-34863980 Msa0019910:intron 50.0%
ATGAAGCATGGACTCCGACA+CGG + chr1_1:34864419-34864438 None:intergenic 50.0%
TTGGGGACAGAGGAAAGAGA+TGG - chr1_1:34864922-34864941 Msa0019910:intron 50.0%
CCTCATCATCAGATTCGCCA+AGG + chr1_1:34865191-34865210 None:intergenic 50.0%
! CCTTGGCGAATCTGATGATG+AGG - chr1_1:34865188-34865207 Msa0019910:intron 50.0%
ACTGTCAAGTGCAAGGGAGT+CGG + chr1_1:34865442-34865461 None:intergenic 50.0%
GTACGATCTTCATACCGAGC+TGG - chr1_1:34865778-34865797 Msa0019910:five_prime_UTR 50.0%
ACGATCTTCATACCGAGCTG+GGG - chr1_1:34865780-34865799 Msa0019910:five_prime_UTR 50.0%
ACCGCAACAACAGCCTCTGT+CGG - chr1_1:34860689-34860708 Msa0019910:intron 55.0%
ACCGACAGAGGCTGTTGTTG+CGG + chr1_1:34860693-34860712 None:intergenic 55.0%
ACAACAGCCTCTGTCGGTGT+CGG - chr1_1:34860695-34860714 Msa0019910:intron 55.0%
AGGAATGGACCTTACCCAGG+TGG - chr1_1:34860747-34860766 Msa0019910:intron 55.0%
GGAATGGACCTTACCCAGGT+GGG - chr1_1:34860748-34860767 Msa0019910:intron 55.0%
TGAATGGACCCAACCCACCT+GGG + chr1_1:34860764-34860783 None:intergenic 55.0%
GCTTTCTGTCTCAACCACGC+AGG + chr1_1:34860813-34860832 None:intergenic 55.0%
!! GGTGGCTTTGTGAGCGTTGT+TGG - chr1_1:34861357-34861376 Msa0019910:intron 55.0%
ATCGGCCAGTGAAAGCAAGC+TGG - chr1_1:34861940-34861959 Msa0019910:intron 55.0%
TCCTCCCGATCCTATGGAAC+CGG - chr1_1:34862657-34862676 Msa0019910:CDS 55.0%
GGAACCGGAAAACACTGCCA+AGG - chr1_1:34862672-34862691 Msa0019910:CDS 55.0%
TGCCAAGGCCATTGCCAGTT+GGG - chr1_1:34862687-34862706 Msa0019910:CDS 55.0%
GTGATATACGCACCCCCAAC+TGG + chr1_1:34862704-34862723 None:intergenic 55.0%
TGTGAAGCACGGACACCTCT+AGG - chr1_1:34863884-34863903 Msa0019910:intron 55.0%
! CCGGTTTGACACGTGTCGTA+TGG + chr1_1:34863964-34863983 None:intergenic 55.0%
GTCGTGTCAAGTGTCCGTGT+CGG - chr1_1:34864402-34864421 Msa0019910:intron 55.0%
GTGTCGGAGTCCATGCTTCA+TGG - chr1_1:34864418-34864437 Msa0019910:intron 55.0%
GGGACAGAGGAAAGAGATGG+AGG - chr1_1:34864925-34864944 Msa0019910:intron 55.0%
GGAGCTCTTCGTCCAGACAA+TGG - chr1_1:34865801-34865820 Msa0019910:five_prime_UTR 55.0%
GTCGGCGATGTCGAAGCTGA+TGG - chr1_1:34860713-34860732 Msa0019910:intron 60.0%
TGGACCTTACCCAGGTGGGT+TGG - chr1_1:34860752-34860771 Msa0019910:intron 60.0%
! GGACCTTACCCAGGTGGGTT+GGG - chr1_1:34860753-34860772 Msa0019910:intron 60.0%
GTGAATGGACCCAACCCACC+TGG + chr1_1:34860765-34860784 None:intergenic 60.0%
!! GGTGGGTTGGGTCCATTCAC+AGG - chr1_1:34860765-34860784 Msa0019910:intron 60.0%
CTCGGGGATACATGCACTCG+TGG - chr1_1:34862595-34862614 Msa0019910:CDS 60.0%
CCATAGGATCGGGAGGAGCT+GGG + chr1_1:34862654-34862673 None:intergenic 60.0%
TCCATAGGATCGGGAGGAGC+TGG + chr1_1:34862655-34862674 None:intergenic 60.0%
TCCGGTTCCATAGGATCGGG+AGG + chr1_1:34862661-34862680 None:intergenic 60.0%
CTGCCAAGGCCATTGCCAGT+TGG - chr1_1:34862686-34862705 Msa0019910:CDS 60.0%
GCCAAGGCCATTGCCAGTTG+GGG - chr1_1:34862688-34862707 Msa0019910:CDS 60.0%
CCAAGGCCATTGCCAGTTGG+GGG - chr1_1:34862689-34862708 Msa0019910:CDS 60.0%
TACGCACCCCCAACTGGCAA+TGG + chr1_1:34862698-34862717 None:intergenic 60.0%
!! GCACGGACACCTCTAGGACT+AGG - chr1_1:34863890-34863909 Msa0019910:intron 60.0%
!! CTCTAGGACTAGGCGTGTCG+CGG - chr1_1:34863900-34863919 Msa0019910:intron 60.0%
!! AGGTGTCGGACACCGATCGT+AGG + chr1_1:34864024-34864043 None:intergenic 60.0%
TTATGTAGCCAGCGGCCCAC+TGG - chr1_1:34865528-34865547 Msa0019910:CDS 60.0%
GACATCGCCGACACCGACAG+AGG + chr1_1:34860705-34860724 None:intergenic 65.0%
GGACCCAACCCACCTGGGTA+AGG + chr1_1:34860759-34860778 None:intergenic 65.0%
GGGAGGAGCTGGGTTTCTGC+TGG + chr1_1:34862644-34862663 None:intergenic 65.0%
CCCAGCTCCTCCCGATCCTA+TGG - chr1_1:34862651-34862670 Msa0019910:CDS 65.0%
CCCCCAACTGGCAATGGCCT+TGG + chr1_1:34862692-34862711 None:intergenic 65.0%
CGCGACACGCCTAGTCCTAG+AGG + chr1_1:34863902-34863921 None:intergenic 65.0%
TGTCGGACACCGACGCGTGT+CGG + chr1_1:34863929-34863948 None:intergenic 65.0%
AGAGCTTACCAGTGGGCCGC+TGG + chr1_1:34865539-34865558 None:intergenic 65.0%
GGACGAAGAGCTCCCCAGCT+CGG + chr1_1:34865795-34865814 Msa0019920:five_prime_UTR 65.0%
TCGCGGTGTCCGACACGCGT+CGG - chr1_1:34863917-34863936 Msa0019910:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 34860054 34866265 34860054 ID=Msa0019910;Name=Msa0019910
chr1_1 mRNA 34860054 34866265 34860054 ID=Msa0019910-mRNA-1;Parent=Msa0019910;Name=Msa0019910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=374|1|1|1|0.75|0.55|9|380|389
chr1_1 exon 34860054 34860171 34860054 ID=Msa0019910-mRNA-1:exon:11023;Parent=Msa0019910-mRNA-1
chr1_1 exon 34860193 34860541 34860193 ID=Msa0019910-mRNA-1:exon:11022;Parent=Msa0019910-mRNA-1
chr1_1 exon 34860770 34860880 34860770 ID=Msa0019910-mRNA-1:exon:11021;Parent=Msa0019910-mRNA-1
chr1_1 exon 34861041 34861212 34861041 ID=Msa0019910-mRNA-1:exon:11020;Parent=Msa0019910-mRNA-1
chr1_1 exon 34862558 34862715 34862558 ID=Msa0019910-mRNA-1:exon:11019;Parent=Msa0019910-mRNA-1
chr1_1 exon 34862826 34862916 34862826 ID=Msa0019910-mRNA-1:exon:11018;Parent=Msa0019910-mRNA-1
chr1_1 exon 34863609 34863772 34863609 ID=Msa0019910-mRNA-1:exon:11017;Parent=Msa0019910-mRNA-1
chr1_1 exon 34865390 34866134 34865390 ID=Msa0019910-mRNA-1:exon:11016;Parent=Msa0019910-mRNA-1
chr1_1 exon 34866250 34866265 34866250 ID=Msa0019910-mRNA-1:exon:11015;Parent=Msa0019910-mRNA-1
chr1_1 five_prime_UTR 34866250 34866265 34866250 ID=Msa0019910-mRNA-1:five_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1 five_prime_UTR 34865777 34866134 34865777 ID=Msa0019910-mRNA-1:five_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34865390 34865776 34865390 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34863609 34863772 34863609 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34862826 34862916 34862826 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34862558 34862715 34862558 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34861041 34861212 34861041 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34860770 34860880 34860770 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 CDS 34860455 34860541 34860455 ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1 three_prime_UTR 34860193 34860454 34860193 ID=Msa0019910-mRNA-1:three_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1 three_prime_UTR 34860054 34860171 34860054 ID=Msa0019910-mRNA-1:three_prime_utr;Parent=Msa0019910-mRNA-1
Gene Sequence

>Msa0019910

ATGTTTCATCAATCACTTCTTCAACCTTGTTCTTTCTCCTTCTCCTCAAACCCATTTCATAAAACCACAAAACCTTCCTCTTGTACTTTCACACTTCGATGCCAAGCCAACGATCCATCACTTTCACATTCCGAGGTTGTTGTCTCACCGCAACAACAGCCTCTGTCGGTGTCGGCGATGTCGAAGCTGATGGAATCAGAGAACAGGAATGGACCTTACCCAGGTGGGTTGGGTCCATTCACAGGAAGAGACCCGAATGTGAAAAAACCTGCGTGGTTGAGACAGAAAGCTCCTCAAGGTGAAAGGTTTTCGAAAATTAAAGAATCTATCTCTCAGTTGAAGCTTAACACTGTTTGTGAGGAAGCACAGTGTCCAAATATTGGAGAGTGTTGGAATGGAGGCGATGATGGTATTGCAACTGCTACAATCATGGTTCTCGGGGATACATGCACTCGTGGATGTAGATTCTGTGCTGTGAAGACCAGCAGAAACCCAGCTCCTCCCGATCCTATGGAACCGGAAAACACTGCCAAGGCCATTGCCAGTTGGGGCGTGGATTATATTGTCATAACAAGTGTGGACCGCGATGATATACCTGATGGAGGAAGTGGGCATTTTGCACAGACTGTGAAAGCTATGAAGAATATCAAACCTGAGATCATGGTTGAGTGTTTAACCTCTGATTTTCGAGGAGATCTTAAGGCTGTAGAAACTCTGGTTCACTCAGGTTTAGATGTCTTTGCTCACAACATTGAGACAGTCAAGCGGCTCCAACGAATTGTTAGAGATCCTAGGGCTGGGTATGAACAAAGCTTAGCAGTTTTAAACCATGCAAAACAAAGCAAGGAGGGTATGATAACAAAATCTTCGATAATGTTGGGCCTTGGCGAATCTGATGATGAGGTGAAGGAAACAATGATGGATTTAAGGGCCATAAATGTGGATATTCTGACTCTTGGTCAGTATTTGCAGCCGACTCCCTTGCACTTGACAGTCAAAGAGTATGTTACGCCTGAGAAGTTTGATTTCTGGAAAGAATATGGAGAGTCTATTGGTTTTCGTTATGTAGCCAGCGGCCCACTGGTACGATCTTCATACCGAGCTGGGGAGCTCTTCGTCCAGACAATGGTAAGAGAAAGTGCCAAGAATGCAGATGGATCATTGTTGTAA
Protein sequence

>Msa0019910

MFHQSLLQPCSFSFSSNPFHKTTKPSSCTFTLRCQANDPSLSHSEVVVSPQQQPLSVSAMSKLMESENRNGPYPGGLGPFTGRDPNVKKPAWLRQKAPQGERFSKIKESISQLKLNTVCEEAQCPNIGECWNGGDDGIATATIMVLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKNIKPEIMVECLTSDFRGDLKAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLAVLNHAKQSKEGMITKSSIMLGLGESDDEVKETMMDLRAINVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKEYGESIGFRYVASGPLVRSSYRAGELFVQTMVRESAKNADGSLL*