AlfalfaGEDB | Msa0019910

M. sativa cultivar zhongmu-4 / Msa0019910

KEGG: K03644
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576
PFAM: PF16881.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019910	XP_013467358.1	98.972	389	4	0	1	389	1	389	0.0	805

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019910	sp\|B9RX57\|LISC_RICCO	79.769	346	69	1	40	384	15	360	0.0	590

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019910	Msa1313690	0.811361	7.275489e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019910	MtrunA17_Chr1g0171131	98.972	389	4	0	1	389	1	389	0.0	805
Msa0019910	MtrunA17_Chr2g0323981	56.958	309	129	3	70	377	63	368	7.86e-125	365

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019910	AT5G08415.1	77.003	387	82	5	1	380	2	388	0.0	586
Msa0019910	AT2G20860.2	60.627	287	112	1	92	377	76	362	2.29e-124	364
Msa0019910	AT2G20860.3	60.627	287	112	1	92	377	76	362	2.29e-124	364
Msa0019910	AT2G20860.1	60.627	287	112	1	92	377	76	362	2.29e-124	364

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Find 129 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTCAACCATGATCTC+AGG	0.502212	1_1:+34862684	None:intergenic
AAACCATGCAAAACAAAGCA+AGG	0.563286	1_1:-34861166	Msa0019910:CDS
AAAGAATATGGAGAGTCTAT+TGG	0.397197	1_1:-34860798	Msa0019910:CDS
AAAGTGATGGATCGTTGGCT+TGG	0.591295	1_1:+34865653	Msa0019920:five_prime_UTR
AAATGCCCACTTCCTCCATC+AGG	0.490145	1_1:+34862851	None:intergenic
AACAAAATCTTCGATAATGT+TGG	0.426835	1_1:-34861133	Msa0019910:CDS
AACAGGAATGGACCTTACCC+AGG	0.632582	1_1:-34865553	Msa0019910:CDS
AACGAATTGTTAGAGATCCT+AGG	0.509719	1_1:-34862563	Msa0019910:CDS
AAGATCTCCTCGAAAATCAG+AGG	0.632820	1_1:+34862659	None:intergenic
AATAGAACCTCTCCAATATT+TGG	0.232954	1_1:+34865382	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTTTATCACACCTAAAA+AGG	+	chr1_1:34860187-34860206	None:intergenic	30.0%
TTGAATCGAAGATGAGTAAT+GGG	+	chr1_1:34860302-34860321	None:intergenic	30.0%
TTTGAATCGAAGATGAGTAA+TGG	+	chr1_1:34860303-34860322	None:intergenic	30.0%
CATAAACCTAATTGTTGACA+AGG	-	chr1_1:34860375-34860394	Msa0019910:three_prime_UTR	30.0%
ATTGTGAAGAGAAAAGAACA+AGG	+	chr1_1:34860508-34860527	None:intergenic	30.0%
TGAAACATTGTGACAACTTT+GGG	+	chr1_1:34860531-34860550	None:intergenic	30.0%
ATGAAACATTGTGACAACTT+TGG	+	chr1_1:34860532-34860551	None:intergenic	30.0%
AATAGAACCTCTCCAATATT+TGG	+	chr1_1:34860918-34860937	None:intergenic	30.0%
ATCAAGTAATTTGGAGAAAC+AGG	-	chr1_1:34861142-34861161	Msa0019910:CDS	30.0%
CTTTCTCTTATGTATAGAAC+CGG	-	chr1_1:34861563-34861582	Msa0019910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	34860054	34866265	34860054	ID=Msa0019910;Name=Msa0019910
chr1_1	mRNA	34860054	34866265	34860054	ID=Msa0019910-mRNA-1;Parent=Msa0019910;Name=Msa0019910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=374\|1\|1\|1\|0.75\|0.55\|9\|380\|389
chr1_1	exon	34860054	34860171	34860054	ID=Msa0019910-mRNA-1:exon:11023;Parent=Msa0019910-mRNA-1
chr1_1	exon	34860193	34860541	34860193	ID=Msa0019910-mRNA-1:exon:11022;Parent=Msa0019910-mRNA-1
chr1_1	exon	34860770	34860880	34860770	ID=Msa0019910-mRNA-1:exon:11021;Parent=Msa0019910-mRNA-1
chr1_1	exon	34861041	34861212	34861041	ID=Msa0019910-mRNA-1:exon:11020;Parent=Msa0019910-mRNA-1
chr1_1	exon	34862558	34862715	34862558	ID=Msa0019910-mRNA-1:exon:11019;Parent=Msa0019910-mRNA-1
chr1_1	exon	34862826	34862916	34862826	ID=Msa0019910-mRNA-1:exon:11018;Parent=Msa0019910-mRNA-1
chr1_1	exon	34863609	34863772	34863609	ID=Msa0019910-mRNA-1:exon:11017;Parent=Msa0019910-mRNA-1
chr1_1	exon	34865390	34866134	34865390	ID=Msa0019910-mRNA-1:exon:11016;Parent=Msa0019910-mRNA-1
chr1_1	exon	34866250	34866265	34866250	ID=Msa0019910-mRNA-1:exon:11015;Parent=Msa0019910-mRNA-1
chr1_1	five_prime_UTR	34866250	34866265	34866250	ID=Msa0019910-mRNA-1:five_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1	five_prime_UTR	34865777	34866134	34865777	ID=Msa0019910-mRNA-1:five_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34865390	34865776	34865390	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34863609	34863772	34863609	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34862826	34862916	34862826	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34862558	34862715	34862558	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34861041	34861212	34861041	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34860770	34860880	34860770	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	CDS	34860455	34860541	34860455	ID=Msa0019910-mRNA-1:cds;Parent=Msa0019910-mRNA-1
chr1_1	three_prime_UTR	34860193	34860454	34860193	ID=Msa0019910-mRNA-1:three_prime_utr;Parent=Msa0019910-mRNA-1
chr1_1	three_prime_UTR	34860054	34860171	34860054	ID=Msa0019910-mRNA-1:three_prime_utr;Parent=Msa0019910-mRNA-1

Gene Sequence

>Msa0019910

ATGTTTCATCAATCACTTCTTCAACCTTGTTCTTTCTCCTTCTCCTCAAACCCATTTCATAAAACCACAAAACCTTCCTCTTGTACTTTCACACTTCGATGCCAAGCCAACGATCCATCACTTTCACATTCCGAGGTTGTTGTCTCACCGCAACAACAGCCTCTGTCGGTGTCGGCGATGTCGAAGCTGATGGAATCAGAGAACAGGAATGGACCTTACCCAGGTGGGTTGGGTCCATTCACAGGAAGAGACCCGAATGTGAAAAAACCTGCGTGGTTGAGACAGAAAGCTCCTCAAGGTGAAAGGTTTTCGAAAATTAAAGAATCTATCTCTCAGTTGAAGCTTAACACTGTTTGTGAGGAAGCACAGTGTCCAAATATTGGAGAGTGTTGGAATGGAGGCGATGATGGTATTGCAACTGCTACAATCATGGTTCTCGGGGATACATGCACTCGTGGATGTAGATTCTGTGCTGTGAAGACCAGCAGAAACCCAGCTCCTCCCGATCCTATGGAACCGGAAAACACTGCCAAGGCCATTGCCAGTTGGGGCGTGGATTATATTGTCATAACAAGTGTGGACCGCGATGATATACCTGATGGAGGAAGTGGGCATTTTGCACAGACTGTGAAAGCTATGAAGAATATCAAACCTGAGATCATGGTTGAGTGTTTAACCTCTGATTTTCGAGGAGATCTTAAGGCTGTAGAAACTCTGGTTCACTCAGGTTTAGATGTCTTTGCTCACAACATTGAGACAGTCAAGCGGCTCCAACGAATTGTTAGAGATCCTAGGGCTGGGTATGAACAAAGCTTAGCAGTTTTAAACCATGCAAAACAAAGCAAGGAGGGTATGATAACAAAATCTTCGATAATGTTGGGCCTTGGCGAATCTGATGATGAGGTGAAGGAAACAATGATGGATTTAAGGGCCATAAATGTGGATATTCTGACTCTTGGTCAGTATTTGCAGCCGACTCCCTTGCACTTGACAGTCAAAGAGTATGTTACGCCTGAGAAGTTTGATTTCTGGAAAGAATATGGAGAGTCTATTGGTTTTCGTTATGTAGCCAGCGGCCCACTGGTACGATCTTCATACCGAGCTGGGGAGCTCTTCGTCCAGACAATGGTAAGAGAAAGTGCCAAGAATGCAGATGGATCATTGTTGTAA

Protein sequence

>Msa0019910

MFHQSLLQPCSFSFSSNPFHKTTKPSSCTFTLRCQANDPSLSHSEVVVSPQQQPLSVSAMSKLMESENRNGPYPGGLGPFTGRDPNVKKPAWLRQKAPQGERFSKIKESISQLKLNTVCEEAQCPNIGECWNGGDDGIATATIMVLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKNIKPEIMVECLTSDFRGDLKAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLAVLNHAKQSKEGMITKSSIMLGLGESDDEVKETMMDLRAINVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKEYGESIGFRYVASGPLVRSSYRAGELFVQTMVRESAKNADGSLL*