AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313690 MtrunA17_Chr8g0342441 95.308 341 15 1 1 340 1 341 0.0 667
Msa1313690 MtrunA17_Chr2g0285411 41.250 320 163 12 44 340 3 320 3.51e-65 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313690 AT3G13800.1 70.501 339 90 3 12 340 23 361 4.47e-174 488
Msa1313690 AT3G13800.4 70.501 339 90 3 12 340 23 361 4.47e-174 488
Msa1313690 AT3G13800.3 79.928 279 55 1 63 340 1 279 6.06e-169 471
Msa1313690 AT3G13800.2 79.928 279 55 1 63 340 1 279 6.06e-169 471
Msa1313690 AT1G30300.1 38.730 315 169 11 49 340 11 324 9.05e-59 192
Msa1313690 AT1G30300.3 38.730 315 169 11 49 340 11 324 9.05e-59 192
Msa1313690 AT1G30300.2 38.730 315 169 11 49 340 11 324 9.05e-59 192
Msa1313690 AT1G30300.4 38.730 315 169 11 49 340 11 324 9.05e-59 192
Msa1313690 AT4G03610.4 39.172 314 158 12 56 340 9 318 2.36e-55 183
Msa1313690 AT4G03610.1 37.261 314 149 13 56 340 9 303 7.77e-47 161
Msa1313690 AT4G03610.2 39.130 276 135 12 56 302 9 280 5.95e-45 155
Msa1313690 AT4G03610.3 39.592 245 117 11 56 273 9 249 2.31e-39 140

Find 83 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGGTGGTTTCCCGAATT+TGG 0.079143 8_4:-11758124 Msa1313690:CDS
CGCTCTTCAGCTACACATTT+TGG 0.129908 8_4:-11755313 Msa1313690:CDS
TGACTACCTTACAAAATTAT+TGG 0.195753 8_4:-11754713 Msa1313690:CDS
CGGTCCCTTGGTTTCCGTTT+TGG 0.200037 8_4:-11755660 Msa1313690:CDS
TCACGCTTGGCTACATAAAT+TGG 0.214243 8_4:+11757323 None:intergenic
TGATACTATACATATGTTAT+AGG 0.281663 8_4:-11754428 Msa1313690:three_prime_UTR
TTGTATCAACTAAATAATAA+TGG 0.283710 8_4:+11756157 None:intergenic
AAGAATGGTGATAGGGAAAA+AGG 0.301564 8_4:+11754479 None:intergenic
TCCGGTGGTTTCCCGAATTT+GGG 0.301656 8_4:-11758123 Msa1313690:intron
ACTACAGTTTCACTCATAAA+AGG 0.301817 8_4:-11754629 Msa1313690:three_prime_UTR
AGAGGAAAAGAGATGGAAAA+AGG 0.316239 8_4:+11760143 None:intergenic
AGGACGCAAACGGCGTGAAT+AGG 0.338658 8_4:+11760163 None:intergenic
AAGAAATAAAGAATGGTGAT+AGG 0.348889 8_4:+11754471 None:intergenic
CAGGTAAACTAACCCAAATT+CGG 0.349548 8_4:+11758111 None:intergenic
CAATCACAAGTTATATTCAT+TGG 0.350082 8_4:-11759962 Msa1313690:CDS
TGTACCGGACATTTAGTAGA+AGG 0.364562 8_4:+11759893 None:intergenic
ATAACTTGTGATTGATCAAC+TGG 0.368109 8_4:+11759971 None:intergenic
TTGTACAAAAGCTGCTAAAC+CGG 0.368677 8_4:-11759084 Msa1313690:CDS
AGAGAGGTTACTGGAGTGGA+TGG 0.381727 8_4:+11760115 None:intergenic
CATTCTCATGCTGATGCAAT+TGG 0.382278 8_4:-11757529 Msa1313690:CDS
AAAAGTGGATAAGTTTCTTC+AGG 0.386969 8_4:+11755501 None:intergenic
CAAGTTATATTCATTGGAAC+TGG 0.391006 8_4:-11759956 Msa1313690:CDS
TGTATCAACTAAATAATAAT+GGG 0.405339 8_4:+11756158 None:intergenic
TTGGTAATATATGTTACATA+AGG 0.409235 8_4:-11755641 Msa1313690:intron
CACAATATTCTTATAGATGC+TGG 0.417952 8_4:-11758999 Msa1313690:CDS
TGTAGCCAAGCGTGACTTTG+AGG 0.419835 8_4:-11757315 Msa1313690:intron
ACGAGAGAAGTGAGTGAAGA+AGG 0.420407 8_4:+11760200 None:intergenic
GGACTGTGAACTTCTAATAA+TGG 0.420963 8_4:-11755475 Msa1313690:intron
TGTGGCATGGTCAAGGTTAT+CGG 0.423742 8_4:-11755680 Msa1313690:CDS
GCAGTTTCTTCCAATGGAAT+TGG 0.430423 8_4:-11760007 Msa1313690:intron
CTAAACCGGGTGATAAGAAT+AGG 0.450434 8_4:-11759070 Msa1313690:CDS
GATGCGCAACTGAGCTATGA+TGG 0.461379 8_4:-11754676 Msa1313690:CDS
GGTCAAGGTTATCGGTCCCT+TGG 0.481205 8_4:-11755672 Msa1313690:CDS
CTGGAGTGGATGGGAGAGAG+AGG 0.482078 8_4:+11760125 None:intergenic
TTCAACATCACCAATTCCAT+TGG 0.484673 8_4:+11759997 None:intergenic
TTTGTTGCAGTTTCTTCCAA+TGG 0.485288 8_4:-11760013 Msa1313690:intron
AGAAATAAAGAATGGTGATA+GGG 0.486767 8_4:+11754472 None:intergenic
TACAAAATTATTGGAGTCTG+AGG 0.491029 8_4:-11754704 Msa1313690:CDS
CGAATAGAGTTAACCACCAT+TGG 0.493444 8_4:+11760233 None:intergenic
GGTAAAGAAGAAATAAAGAA+TGG 0.495634 8_4:+11754464 None:intergenic
AGTTCACAGTCCTTCAAAAG+TGG 0.504029 8_4:+11755486 None:intergenic
TGACCATGCCACACTGGTAG+TGG 0.508732 8_4:+11755690 None:intergenic
TAATCCTTCTACTAAATGTC+CGG 0.513244 8_4:-11759897 Msa1313690:intron
GGGAGAGAGAGGAAAAGAGA+TGG 0.515010 8_4:+11760136 None:intergenic
TGTAACATATATTACCAAAA+CGG 0.516666 8_4:+11755646 None:intergenic
AGGTAAACTAACCCAAATTC+GGG 0.517181 8_4:+11758112 None:intergenic
GAGAGGTTACTGGAGTGGAT+GGG 0.520388 8_4:+11760116 None:intergenic
AGAGAGAGAGGTTACTGGAG+TGG 0.522605 8_4:+11760111 None:intergenic
TCTCATGCTGATGCAATTGG+AGG 0.529678 8_4:-11757526 Msa1313690:intron
ATGTGTAGCTGAAGAGCGAT+CGG 0.537686 8_4:+11755318 None:intergenic
ACACAACACAATTGAACCAA+TGG 0.540102 8_4:-11760249 Msa1313690:exon
CATAGCTCAGTTGCGCATCA+AGG 0.543483 8_4:+11754680 None:intergenic
ATTCGCCACGCGAATGCCAC+AGG 0.550713 8_4:-11759026 Msa1313690:CDS
TTGAAATGAATGTCATTACC+AGG 0.551112 8_4:-11754546 Msa1313690:three_prime_UTR
GTCTTGATGATCTTAGAGAC+TGG 0.552009 8_4:-11757370 Msa1313690:CDS
GAGGACCTCAAAGTCACGCT+TGG 0.556366 8_4:+11757310 None:intergenic
CTTGGCTACATAAATTGGAA+TGG 0.558295 8_4:+11757328 None:intergenic
ATGAGAATGAGTAATAATAA+CGG 0.560983 8_4:+11757543 None:intergenic
AATGCTGAGACCGCAGCACC+AGG 0.563087 8_4:+11756123 None:intergenic
TTAGTCAAGCAGCTAACTCT+CGG 0.563225 8_4:+11759917 None:intergenic
ATTGGAACTGGAACTAGTGA+AGG 0.568637 8_4:-11759944 Msa1313690:CDS
TGTGTAGCTGAAGAGCGATC+GGG 0.569534 8_4:+11755319 None:intergenic
TGAAGGTATGATGCATCTGA+TGG 0.575148 8_4:-11754752 Msa1313690:intron
TGTACAAAAGCTGCTAAACC+GGG 0.576014 8_4:-11759083 Msa1313690:CDS
GCTACATAAATTGGAATGGA+GGG 0.577865 8_4:+11757332 None:intergenic
AGTCTCCTATTCTTATCACC+CGG 0.577902 8_4:+11759065 None:intergenic
ACCCAAATTCGGGAAACCAC+CGG 0.588739 8_4:+11758122 None:intergenic
CTACCAGTGTGGCATGGTCA+AGG 0.589078 8_4:-11755687 Msa1313690:CDS
ATGCGCAACTGAGCTATGAT+GGG 0.595409 8_4:-11754675 Msa1313690:CDS
TATTACCAAAACGGAAACCA+AGG 0.596749 8_4:+11755655 None:intergenic
TCTATCACAGTGCTCTCCGG+TGG 0.598907 8_4:-11758138 Msa1313690:CDS
GGCTACATAAATTGGAATGG+AGG 0.601861 8_4:+11757331 None:intergenic
CAACACAATTGAACCAATGG+TGG 0.605939 8_4:-11760246 Msa1313690:exon
ACAAAATTATTGGAGTCTGA+GGG 0.606652 8_4:-11754703 Msa1313690:CDS
TAGTATCATAGTGTTAAGAG+AGG 0.612714 8_4:+11754443 None:intergenic
AAGAATATTGTGTGTTCCTG+TGG 0.620931 8_4:+11759010 None:intergenic
TAACCTTGACCATGCCACAC+TGG 0.621640 8_4:+11755684 None:intergenic
TGTAATCATACCTGGTGCTG+CGG 0.622886 8_4:-11756133 Msa1313690:CDS
GATACAAGTGTAATCATACC+TGG 0.624797 8_4:-11756141 Msa1313690:CDS
ACTCCACTACCAGTGTGGCA+TGG 0.653555 8_4:-11755693 Msa1313690:CDS
ATTACCAAAACGGAAACCAA+GGG 0.656302 8_4:+11755656 None:intergenic
GTGTTCCTGTGGCATTCGCG+TGG 0.658076 8_4:+11759021 None:intergenic
AGTTTACTCCACTACCAGTG+TGG 0.676456 8_4:-11755698 Msa1313690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTTATTATAAATAAATTT+TGG - chr8_4:11754622-11754641 Msa1313690:three_prime_UTR 10.0%
!! ACCAAAATTTATTTATAATA+AGG + chr8_4:11754626-11754645 None:intergenic 10.0%
!! TTATTTACTTTAGTTATTAT+CGG - chr8_4:11754947-11754966 Msa1313690:intron 10.0%
!!! AAATTACGAATTTTATGATA+TGG + chr8_4:11754825-11754844 None:intergenic 15.0%
!!! ATTATTTTTGCCTTTTTTTA+TGG - chr8_4:11755556-11755575 Msa1313690:intron 15.0%
!!! TAGATTTTCTTTTCTTTTTA+TGG - chr8_4:11755829-11755848 Msa1313690:intron 15.0%
!!! AGCATTGATTTTTTTTAATA+CGG + chr8_4:11757533-11757552 None:intergenic 15.0%
!!! ATACATTTAAGATAATTTTC+AGG - chr8_4:11757976-11757995 Msa1313690:intron 15.0%
!! TTCTCAAATATTATAACTTT+CGG - chr8_4:11758050-11758069 Msa1313690:intron 15.0%
!!! TTAAATCATTTTATACTTTC+AGG + chr8_4:11758376-11758395 None:intergenic 15.0%
!! TGTATCAACTAAATAATAAT+GGG + chr8_4:11758519-11758538 None:intergenic 15.0%
!! TTGTATCAACTAAATAATAA+TGG + chr8_4:11758520-11758539 None:intergenic 15.0%
!! TCAGAAATTACAAATTTAAT+AGG + chr8_4:11758897-11758916 None:intergenic 15.0%
!!! AATTTTTTAATGTGAAAATG+AGG + chr8_4:11759270-11759289 None:intergenic 15.0%
!! ACATTAAAAAATTAGAACTA+TGG - chr8_4:11759277-11759296 Msa1313690:intron 15.0%
!!! GTAATTATGGTTTTAAATAA+AGG + chr8_4:11759842-11759861 None:intergenic 15.0%
!! ATTGATGAAATATGTAATTA+TGG + chr8_4:11759855-11759874 None:intergenic 15.0%
!! GATTGATATTATTAATGTAC+CGG + chr8_4:11754799-11754818 None:intergenic 20.0%
!!! TCTTTCTAAATAGTTTTTCT+AGG + chr8_4:11755370-11755389 None:intergenic 20.0%
!! AGATTAATGATAGAACTTTA+TGG - chr8_4:11755395-11755414 Msa1313690:intron 20.0%
!! AGAAAAGAAAATCTAACTTT+GGG + chr8_4:11755824-11755843 None:intergenic 20.0%
!! AAGAAAAGAAAATCTAACTT+TGG + chr8_4:11755825-11755844 None:intergenic 20.0%
!! AAATTAATAGATAGCAATTG+TGG - chr8_4:11755881-11755900 Msa1313690:intron 20.0%
!! AATTTAGTGAAGATATTGTA+TGG - chr8_4:11756037-11756056 Msa1313690:intron 20.0%
!! AACAGAAAAAATAATTGAAC+AGG + chr8_4:11756585-11756604 None:intergenic 20.0%
!!! GATATTGTTATTGTTATTTG+AGG - chr8_4:11756608-11756627 Msa1313690:intron 20.0%
!! TTTGTGCAAGTATTATAATT+GGG - chr8_4:11756857-11756876 Msa1313690:intron 20.0%
!! ATGAGAATGAGTAATAATAA+CGG + chr8_4:11757134-11757153 None:intergenic 20.0%
!! TTTATGTCAACATGTTTAAA+TGG - chr8_4:11757594-11757613 Msa1313690:intron 20.0%
!!! TATACATCTTTTAAATGTTG+AGG + chr8_4:11757729-11757748 None:intergenic 20.0%
!! TTTGTAGTTAAAAATTGAGA+AGG - chr8_4:11757755-11757774 Msa1313690:intron 20.0%
!! AAATTATAATACAGAACCTT+TGG + chr8_4:11757856-11757875 None:intergenic 20.0%
!! TCTCAAATATTATAACTTTC+GGG - chr8_4:11758051-11758070 Msa1313690:intron 20.0%
!!! ATAATAAGCTTGATTTTGTT+AGG - chr8_4:11758081-11758100 Msa1313690:intron 20.0%
!! TAAACATCAAGAAATCTATT+AGG + chr8_4:11758275-11758294 None:intergenic 20.0%
!! TATAATATAATGAATGATCG+AGG - chr8_4:11758641-11758660 Msa1313690:intron 20.0%
!! ATAATATAATGAATGATCGA+GGG - chr8_4:11758642-11758661 Msa1313690:intron 20.0%
!! CAATCAATTGATGTATTTAA+AGG - chr8_4:11758714-11758733 Msa1313690:intron 20.0%
!! TTAAAATGCAGTTATAAAAG+TGG + chr8_4:11758796-11758815 None:intergenic 20.0%
!! TGTAACATATATTACCAAAA+CGG + chr8_4:11759031-11759050 None:intergenic 20.0%
!!! TTGGTAATATATGTTACATA+AGG - chr8_4:11759033-11759052 Msa1313690:CDS 20.0%
!!! ATATGTATTGACAAAAAATC+TGG + chr8_4:11759108-11759127 None:intergenic 20.0%
!! TAAAAATCAACAAATGTGAA+AGG + chr8_4:11759411-11759430 None:intergenic 20.0%
!!! ACATTTGTTGATTTTTATCT+TGG - chr8_4:11759414-11759433 Msa1313690:intron 20.0%
!! AGTTCATTGATCAAATATTT+AGG - chr8_4:11759599-11759618 Msa1313690:intron 20.0%
!! GTAGTAACTAAAAAAAATTG+TGG - chr8_4:11759654-11759673 Msa1313690:intron 20.0%
!!! TATGGTTTTAAATAAAGGTT+CGG + chr8_4:11759837-11759856 None:intergenic 20.0%
!! TGATACTATACATATGTTAT+AGG - chr8_4:11760246-11760265 Msa1313690:exon 20.0%
! CAATCACAAGTTATATTCAT+TGG - chr8_4:11754712-11754731 Msa1313690:CDS 25.0%
!! TACGAATTTTATGATATGGT+AGG + chr8_4:11754821-11754840 None:intergenic 25.0%
!! ATTAAGTATCACTTAAGTTG+AGG - chr8_4:11755047-11755066 Msa1313690:intron 25.0%
!!! TTAAGTTGAGGAAAATTTCT+AGG - chr8_4:11755059-11755078 Msa1313690:intron 25.0%
!! TAAGTTGAGGAAAATTTCTA+GGG - chr8_4:11755060-11755079 Msa1313690:intron 25.0%
! AAGATTAGATGAGATAAGAT+TGG - chr8_4:11755192-11755211 Msa1313690:CDS 25.0%
! CCTACAATAACCATAAAAAA+AGG + chr8_4:11755569-11755588 None:intergenic 25.0%
!!! CCTTTTTTTATGGTTATTGT+AGG - chr8_4:11755566-11755585 Msa1313690:intron 25.0%
! ATATGTATTGCAATTATGCT+AGG - chr8_4:11755725-11755744 Msa1313690:intron 25.0%
! TGGACTGAAATCAAAATAAA+AGG + chr8_4:11755777-11755796 None:intergenic 25.0%
! TTATACAAGCAAAATATTCC+AGG + chr8_4:11755911-11755930 None:intergenic 25.0%
! TGCATTAGAAAAACTTTCAA+CGG - chr8_4:11756011-11756030 Msa1313690:intron 25.0%
! TATGAATTATTCGTTACTCT+AGG + chr8_4:11756121-11756140 None:intergenic 25.0%
! CGATTAATATATAGTGTGTT+AGG - chr8_4:11756361-11756380 Msa1313690:intron 25.0%
! AAATAGACATGTATACAGTA+TGG - chr8_4:11756384-11756403 Msa1313690:intron 25.0%
! AAACTGAGAAATTCAATTCA+AGG - chr8_4:11756424-11756443 Msa1313690:intron 25.0%
!!! CTATTTTCCATATTGCTTTT+CGG - chr8_4:11756640-11756659 Msa1313690:intron 25.0%
! AGTACTCTACAACTTTAATA+AGG - chr8_4:11756666-11756685 Msa1313690:intron 25.0%
! GTACTCTACAACTTTAATAA+GGG - chr8_4:11756667-11756686 Msa1313690:intron 25.0%
! CTTTGTGCAAGTATTATAAT+TGG - chr8_4:11756856-11756875 Msa1313690:intron 25.0%
! AATTGGGATTATCAAATATC+TGG - chr8_4:11756873-11756892 Msa1313690:intron 25.0%
!!! TTTTTGTCTCTTAAGTTGAT+AGG + chr8_4:11756913-11756932 None:intergenic 25.0%
! TAATACTTTCTAATACTCTG+TGG - chr8_4:11757181-11757200 Msa1313690:intron 25.0%
!! TTGAAAGCTTTAATTTCAGA+AGG + chr8_4:11757403-11757422 None:intergenic 25.0%
! ATATATATGTCTAAGAGACT+AGG - chr8_4:11757451-11757470 Msa1313690:intron 25.0%
! GCTATTATTAAGATCAAATG+TGG - chr8_4:11757481-11757500 Msa1313690:intron 25.0%
!! TTTTTAATACGGTGATATGT+GGG + chr8_4:11757522-11757541 None:intergenic 25.0%
!!! TTTTTTAATACGGTGATATG+TGG + chr8_4:11757523-11757542 None:intergenic 25.0%
! TTTGGATCAAGATATTATAC+AGG + chr8_4:11757838-11757857 None:intergenic 25.0%
! TGTATAATATCTTGATCCAA+AGG - chr8_4:11757837-11757856 Msa1313690:intron 25.0%
!! CTGTATTATAATTTGTGTGA+TGG - chr8_4:11757862-11757881 Msa1313690:intron 25.0%
!!! TATGATAGCTTTTGAAATTC+AGG - chr8_4:11757899-11757918 Msa1313690:intron 25.0%
!!! ATGATAGCTTTTGAAATTCA+GGG - chr8_4:11757900-11757919 Msa1313690:intron 25.0%
!!! TAGAAAAATGAAGTGTTTTC+AGG - chr8_4:11758015-11758034 Msa1313690:intron 25.0%
!!! AGAAAAATGAAGTGTTTTCA+GGG - chr8_4:11758016-11758035 Msa1313690:intron 25.0%
! ACACTTTATCTACTCAATAA+GGG + chr8_4:11758110-11758129 None:intergenic 25.0%
!!! CAGTGTAAATTAGTTTTACA+CGG + chr8_4:11758864-11758883 None:intergenic 25.0%
! AGTTTATGGAAAGATAGATA+AGG + chr8_4:11759245-11759264 None:intergenic 25.0%
!! ATAATGTGTATACTTTTGAC+AGG - chr8_4:11759321-11759340 Msa1313690:intron 25.0%
!! CGTTGCAATATTTTATATTG+TGG - chr8_4:11759717-11759736 Msa1313690:intron 25.0%
! TGACTACCTTACAAAATTAT+TGG - chr8_4:11759961-11759980 Msa1313690:CDS 25.0%
! AGAAATAAAGAATGGTGATA+GGG + chr8_4:11760205-11760224 None:intergenic 25.0%
! AAGAAATAAAGAATGGTGAT+AGG + chr8_4:11760206-11760225 None:intergenic 25.0%
! GGTAAAGAAGAAATAAAGAA+TGG + chr8_4:11760213-11760232 None:intergenic 25.0%
! ATAACTTGTGATTGATCAAC+TGG + chr8_4:11754706-11754725 None:intergenic 30.0%
CAAGTTATATTCATTGGAAC+TGG - chr8_4:11754718-11754737 Msa1313690:CDS 30.0%
TAATCCTTCTACTAAATGTC+CGG - chr8_4:11754777-11754796 Msa1313690:intron 30.0%
TAATAGCGGTAATGTTCTAT+GGG - chr8_4:11755089-11755108 Msa1313690:intron 30.0%
! TTGGTTTAGGATTTCTATTG+AGG - chr8_4:11755517-11755536 Msa1313690:CDS 30.0%
CACAATATTCTTATAGATGC+TGG - chr8_4:11755675-11755694 Msa1313690:CDS 30.0%
ATTATGCTAGGTTACGAATT+AGG - chr8_4:11755737-11755756 Msa1313690:intron 30.0%
ACATCAAGAAATCACAAACT+TGG + chr8_4:11755797-11755816 None:intergenic 30.0%
! GTTGATTCATTTACAAGTGA+AGG - chr8_4:11755959-11755978 Msa1313690:intron 30.0%
GTATGGATGAGTATAAGAAT+AGG - chr8_4:11756054-11756073 Msa1313690:intron 30.0%
TGATATATCATATCCTGACT+AGG + chr8_4:11756083-11756102 None:intergenic 30.0%
TAGTCAGGATATGATATATC+AGG - chr8_4:11756082-11756101 Msa1313690:CDS 30.0%
AGTCAGGATATGATATATCA+GGG - chr8_4:11756083-11756102 Msa1313690:CDS 30.0%
TTTCCTGAAATACAAGAACA+GGG + chr8_4:11756180-11756199 None:intergenic 30.0%
ATTTCCTGAAATACAAGAAC+AGG + chr8_4:11756181-11756200 None:intergenic 30.0%
!!! AAGCGAGCTTTATTTTGTAA+CGG + chr8_4:11756321-11756340 None:intergenic 30.0%
AATCGAGTTATAGTCAAGAT+AGG + chr8_4:11756346-11756365 None:intergenic 30.0%
!!! ATTTTTGTTTTCCTCGAAAC+TGG + chr8_4:11756450-11756469 None:intergenic 30.0%
CGAAAAGCAATATGGAAAAT+AGG + chr8_4:11756642-11756661 None:intergenic 30.0%
! TACTTTTCCGAAAAGCAATA+TGG + chr8_4:11756650-11756669 None:intergenic 30.0%
CTACAACTTTAATAAGGGTT+AGG - chr8_4:11756672-11756691 Msa1313690:intron 30.0%
GGTTCTTATAAAGTTGTAGT+GGG - chr8_4:11756794-11756813 Msa1313690:intron 30.0%
TATATATAGACAACAAGCAG+AGG + chr8_4:11757438-11757457 None:intergenic 30.0%
ATCAAATGTGGAAACTGTAA+GGG - chr8_4:11757493-11757512 Msa1313690:intron 30.0%
CACACTTTATCTACTCAATA+AGG + chr8_4:11758111-11758130 None:intergenic 30.0%
AAGTGTGATATTAAGCAATG+AGG - chr8_4:11758124-11758143 Msa1313690:CDS 30.0%
AAGAGACAAATCCAAAAGAT+TGG + chr8_4:11758167-11758186 None:intergenic 30.0%
ACATCAAGAAATCTATTAGG+CGG + chr8_4:11758272-11758291 None:intergenic 30.0%
TAACAAATGATTCATGAGTC+CGG + chr8_4:11758414-11758433 None:intergenic 30.0%
!!! GAAGAACCTTTTTTTGTACA+CGG - chr8_4:11758593-11758612 Msa1313690:intron 30.0%
TTCAATCCGTGTACAAAAAA+AGG + chr8_4:11758602-11758621 None:intergenic 30.0%
!!! TTTTTTTGTACACGGATTGA+AGG - chr8_4:11758601-11758620 Msa1313690:intron 30.0%
AAAAAATGAAACACTCCCAT+TGG - chr8_4:11758834-11758853 Msa1313690:intron 30.0%
AAAAGTGGATAAGTTTCTTC+AGG + chr8_4:11759176-11759195 None:intergenic 30.0%
!! AGAAACTTATCCACTTTTGA+AGG - chr8_4:11759178-11759197 Msa1313690:intron 30.0%
TATGGAAAGATAGATAAGGT+AGG + chr8_4:11759241-11759260 None:intergenic 30.0%
TATGGCATAGTATTTCTCTT+TGG - chr8_4:11759295-11759314 Msa1313690:intron 30.0%
! TTATTCTGATCTTCCTTTTC+AGG - chr8_4:11759446-11759465 Msa1313690:intron 30.0%
! AATTTTTCTCACTTCCTCTA+AGG + chr8_4:11759472-11759491 None:intergenic 30.0%
TGAGAAAAATTCAACCCAAA+AGG - chr8_4:11759481-11759500 Msa1313690:intron 30.0%
GAATATCTCCTAAAGTTCAT+AGG - chr8_4:11759632-11759651 Msa1313690:intron 30.0%
AGTTACTACCTATGAACTTT+AGG + chr8_4:11759643-11759662 None:intergenic 30.0%
! AATTTTTGATGTCTCGTTGT+TGG - chr8_4:11759894-11759913 Msa1313690:intron 30.0%
! CAGACTCCAATAATTTTGTA+AGG + chr8_4:11759970-11759989 None:intergenic 30.0%
TACAAAATTATTGGAGTCTG+AGG - chr8_4:11759970-11759989 Msa1313690:CDS 30.0%
ACAAAATTATTGGAGTCTGA+GGG - chr8_4:11759971-11759990 Msa1313690:CDS 30.0%
ACTACAGTTTCACTCATAAA+AGG - chr8_4:11760045-11760064 Msa1313690:intron 30.0%
TTGAAATGAATGTCATTACC+AGG - chr8_4:11760128-11760147 Msa1313690:CDS 30.0%
!!! TGTCATTACCAGGTTTTTTA+TGG - chr8_4:11760138-11760157 Msa1313690:CDS 30.0%
TGTACATACCATAAAAAACC+TGG + chr8_4:11760149-11760168 None:intergenic 30.0%
! TTATGGTATGTACATTTTGC+AGG - chr8_4:11760155-11760174 Msa1313690:CDS 30.0%
TAGTATCATAGTGTTAAGAG+AGG + chr8_4:11760234-11760253 None:intergenic 30.0%
ACACAACACAATTGAACCAA+TGG - chr8_4:11754425-11754444 Msa1313690:three_prime_UTR 35.0%
AGAGGAAAAGAGATGGAAAA+AGG + chr8_4:11754534-11754553 None:intergenic 35.0%
TTTGTTGCAGTTTCTTCCAA+TGG - chr8_4:11754661-11754680 Msa1313690:CDS 35.0%
TTCAACATCACCAATTCCAT+TGG + chr8_4:11754680-11754699 None:intergenic 35.0%
GTAATAGCGGTAATGTTCTA+TGG - chr8_4:11755088-11755107 Msa1313690:intron 35.0%
CGCTTACTTTACTTTCATGT+TGG + chr8_4:11755138-11755157 None:intergenic 35.0%
CATTAGAGATTGAGAGAGTT+GGG - chr8_4:11755224-11755243 Msa1313690:intron 35.0%
ATTAGAGATTGAGAGAGTTG+GGG - chr8_4:11755225-11755244 Msa1313690:intron 35.0%
!! GTTGTTGTTGTTTATGTGTC+TGG - chr8_4:11755468-11755487 Msa1313690:intron 35.0%
! TTTGTGTCAGTGTTTGGTTT+AGG - chr8_4:11755504-11755523 Msa1313690:CDS 35.0%
TTGTACAAAAGCTGCTAAAC+CGG - chr8_4:11755590-11755609 Msa1313690:intron 35.0%
AAGAATATTGTGTGTTCCTG+TGG + chr8_4:11755667-11755686 None:intergenic 35.0%
TGGACTCATGAAAACTCTAA+TGG - chr8_4:11755849-11755868 Msa1313690:intron 35.0%
CAGAAAAAGAGAGAAAACCA+GGG - chr8_4:11756142-11756161 Msa1313690:CDS 35.0%
! GATACACATTGCATTGACAT+TGG - chr8_4:11756209-11756228 Msa1313690:intron 35.0%
! ATTGGTGTTTATGCAAAGAG+TGG - chr8_4:11756227-11756246 Msa1313690:intron 35.0%
!!! AGCTTTATTTTGTAACGGAC+TGG + chr8_4:11756316-11756335 None:intergenic 35.0%
CTCACGTGTTTGCTTAATTT+GGG - chr8_4:11756480-11756499 Msa1313690:intron 35.0%
AGGTAAACTAACCCAAATTC+GGG + chr8_4:11756565-11756584 None:intergenic 35.0%
CAGGTAAACTAACCCAAATT+CGG + chr8_4:11756566-11756585 None:intergenic 35.0%
GTAGAATGGAATATTTGAGC+AGG - chr8_4:11756703-11756722 Msa1313690:intron 35.0%
! GCAGGTTATCTATTCTGTTT+TGG + chr8_4:11756734-11756753 None:intergenic 35.0%
CTTTATAAGAACCGCTCTAA+TGG + chr8_4:11756787-11756806 None:intergenic 35.0%
CGGTTCTTATAAAGTTGTAG+TGG - chr8_4:11756793-11756812 Msa1313690:intron 35.0%
CAAGCTTAACTCATACACTA+TGG + chr8_4:11756833-11756852 None:intergenic 35.0%
TAGTGTATGAGTTAAGCTTG+TGG - chr8_4:11756833-11756852 Msa1313690:intron 35.0%
! TGACTAGTTGTATTTCTGTC+AGG - chr8_4:11757092-11757111 Msa1313690:intron 35.0%
GCTACATAAATTGGAATGGA+GGG + chr8_4:11757345-11757364 None:intergenic 35.0%
CTTGGCTACATAAATTGGAA+TGG + chr8_4:11757349-11757368 None:intergenic 35.0%
GATCAAATGTGGAAACTGTA+AGG - chr8_4:11757492-11757511 Msa1313690:intron 35.0%
!!! ATAGCTTTTGAAATTCAGGG+AGG - chr8_4:11757903-11757922 Msa1313690:intron 35.0%
!!! TAGCTTTTGAAATTCAGGGA+GGG - chr8_4:11757904-11757923 Msa1313690:intron 35.0%
AGCATAACTGTAATGCAAGA+TGG + chr8_4:11757937-11757956 None:intergenic 35.0%
! ATCCAAAAGATTGGTCCATT+AGG + chr8_4:11758158-11758177 None:intergenic 35.0%
CATCAAGAAATCTATTAGGC+GGG + chr8_4:11758271-11758290 None:intergenic 35.0%
AACAGGAAATCCAAATCCAT+GGG + chr8_4:11758333-11758352 None:intergenic 35.0%
TAACAGGAAATCCAAATCCA+TGG + chr8_4:11758334-11758353 None:intergenic 35.0%
TTAAAGCTTGTGAAGATCAC+CGG - chr8_4:11758392-11758411 Msa1313690:intron 35.0%
TGTTCATTACTGAAATGTGC+AGG - chr8_4:11758481-11758500 Msa1313690:intron 35.0%
GATACAAGTGTAATCATACC+TGG - chr8_4:11758533-11758552 Msa1313690:intron 35.0%
!!! TGGGAGTGTTTCATTTTTTC+AGG + chr8_4:11758833-11758852 None:intergenic 35.0%
! GTTTTACACGGATTTCCAAT+GGG + chr8_4:11758852-11758871 None:intergenic 35.0%
! AGTTTTACACGGATTTCCAA+TGG + chr8_4:11758853-11758872 None:intergenic 35.0%
TGACTGAAATTGTTGTGCAT+GGG - chr8_4:11758914-11758933 Msa1313690:intron 35.0%
ATTACCAAAACGGAAACCAA+GGG + chr8_4:11759021-11759040 None:intergenic 35.0%
TATTACCAAAACGGAAACCA+AGG + chr8_4:11759022-11759041 None:intergenic 35.0%
GGACTGTGAACTTCTAATAA+TGG - chr8_4:11759199-11759218 Msa1313690:intron 35.0%
AAAGATAGATAAGGTAGGAG+GGG + chr8_4:11759236-11759255 None:intergenic 35.0%
GAAAGATAGATAAGGTAGGA+GGG + chr8_4:11759237-11759256 None:intergenic 35.0%
!! GTGAAAATGAGGCTAGTTTA+TGG + chr8_4:11759259-11759278 None:intergenic 35.0%
!!! CCAGTAAAAAGTGTCCTTTT+GGG + chr8_4:11759498-11759517 None:intergenic 35.0%
!!! ACCAGTAAAAAGTGTCCTTT+TGG + chr8_4:11759499-11759518 None:intergenic 35.0%
CTGTTGCACAAAGAAAATCA+AGG + chr8_4:11759571-11759590 None:intergenic 35.0%
TTTCATGTAAGTGAACCACA+AGG + chr8_4:11759787-11759806 None:intergenic 35.0%
AAGAATGGTGATAGGGAAAA+AGG + chr8_4:11760198-11760217 None:intergenic 35.0%
CAACACAATTGAACCAATGG+TGG - chr8_4:11754428-11754447 Msa1313690:three_prime_UTR 40.0%
CGAATAGAGTTAACCACCAT+TGG + chr8_4:11754444-11754463 None:intergenic 40.0%
AGATGGAAAAAGGACGCAAA+CGG + chr8_4:11754524-11754543 None:intergenic 40.0%
GCAGTTTCTTCCAATGGAAT+TGG - chr8_4:11754667-11754686 Msa1313690:CDS 40.0%
ATTGGAACTGGAACTAGTGA+AGG - chr8_4:11754730-11754749 Msa1313690:CDS 40.0%
TTAGTCAAGCAGCTAACTCT+CGG + chr8_4:11754760-11754779 None:intergenic 40.0%
TGTACCGGACATTTAGTAGA+AGG + chr8_4:11754784-11754803 None:intergenic 40.0%
!! TTCTAGGGTAGCTGTAATAG+CGG - chr8_4:11755075-11755094 Msa1313690:intron 40.0%
TGTTCTATGGGACAAAGTGT+TGG - chr8_4:11755101-11755120 Msa1313690:intron 40.0%
! GTTCTATGGGACAAAGTGTT+GGG - chr8_4:11755102-11755121 Msa1313690:intron 40.0%
! AAGTAAGCGTTGTAGAGATG+AGG - chr8_4:11755149-11755168 Msa1313690:intron 40.0%
GCATTAGAGATTGAGAGAGT+TGG - chr8_4:11755223-11755242 Msa1313690:intron 40.0%
GGTAGCAAGTGTAGTTGAAA+TGG - chr8_4:11755246-11755265 Msa1313690:intron 40.0%
AAATGGTACAAACTAGCCCT+AGG - chr8_4:11755263-11755282 Msa1313690:intron 40.0%
ATGCTCAAACAAACCACCTA+GGG + chr8_4:11755282-11755301 None:intergenic 40.0%
TATGCTCAAACAAACCACCT+AGG + chr8_4:11755283-11755302 None:intergenic 40.0%
! GACCTGTAGATTTTGCAGTA+AGG - chr8_4:11755312-11755331 Msa1313690:CDS 40.0%
CTCCTTACTGCAAAATCTAC+AGG + chr8_4:11755317-11755336 None:intergenic 40.0%
AGTCAAATCACTGAAGACAG+AGG - chr8_4:11755340-11755359 Msa1313690:intron 40.0%
TTATGTGTCTGGATCGTGTT+TGG - chr8_4:11755479-11755498 Msa1313690:CDS 40.0%
! TTGGTGTTTGTGTCAGTGTT+TGG - chr8_4:11755498-11755517 Msa1313690:CDS 40.0%
TGTACAAAAGCTGCTAAACC+GGG - chr8_4:11755591-11755610 Msa1313690:intron 40.0%
CTAAACCGGGTGATAAGAAT+AGG - chr8_4:11755604-11755623 Msa1313690:intron 40.0%
AGTCTCCTATTCTTATCACC+CGG + chr8_4:11755612-11755631 None:intergenic 40.0%
TAAGAATAGGTTGCCTAGTC+AGG - chr8_4:11756067-11756086 Msa1313690:intron 40.0%
GCAGAAAAAGAGAGAAAACC+AGG - chr8_4:11756141-11756160 Msa1313690:CDS 40.0%
TCTCCCTGTTCTTGTATTTC+AGG - chr8_4:11756174-11756193 Msa1313690:CDS 40.0%
CCAAATTAAGCAAACACGTG+AGG + chr8_4:11756482-11756501 None:intergenic 40.0%
CCTCACGTGTTTGCTTAATT+TGG - chr8_4:11756479-11756498 Msa1313690:intron 40.0%
! TTTTCTATCACAGTGCTCTC+CGG - chr8_4:11756533-11756552 Msa1313690:intron 40.0%
GTTAGGAACTGCATGTAGAA+TGG - chr8_4:11756689-11756708 Msa1313690:intron 40.0%
TCATACATGCACCATTAGAG+CGG - chr8_4:11756773-11756792 Msa1313690:intron 40.0%
! TATAAAGTTGTAGTGGGACC+AGG - chr8_4:11756800-11756819 Msa1313690:intron 40.0%
! ATAAAGTTGTAGTGGGACCA+GGG - chr8_4:11756801-11756820 Msa1313690:intron 40.0%
TCACAAGAGTTGTACATCAG+TGG - chr8_4:11756935-11756954 Msa1313690:intron 40.0%
TACATCAGTGGCATTTCTTG+TGG - chr8_4:11756947-11756966 Msa1313690:intron 40.0%
CGATCTACATCATAAGCTCT+AGG + chr8_4:11757010-11757029 None:intergenic 40.0%
CATTCTCATGCTGATGCAAT+TGG - chr8_4:11757145-11757164 Msa1313690:intron 40.0%
! TCTAAGATCATCAAGACCTG+GGG + chr8_4:11757301-11757320 None:intergenic 40.0%
!! CTCTAAGATCATCAAGACCT+GGG + chr8_4:11757302-11757321 None:intergenic 40.0%
!! TCTCTAAGATCATCAAGACC+TGG + chr8_4:11757303-11757322 None:intergenic 40.0%
! GTCTTGATGATCTTAGAGAC+TGG - chr8_4:11757304-11757323 Msa1313690:intron 40.0%
GGCTACATAAATTGGAATGG+AGG + chr8_4:11757346-11757365 None:intergenic 40.0%
TCACGCTTGGCTACATAAAT+TGG + chr8_4:11757354-11757373 None:intergenic 40.0%
ATTTCAGAAGGAAAGAGCAG+CGG + chr8_4:11757391-11757410 None:intergenic 40.0%
AATGGTGTTTATGCCTTCAC+TGG - chr8_4:11757612-11757631 Msa1313690:intron 40.0%
ATGGTGTTTATGCCTTCACT+GGG - chr8_4:11757613-11757632 Msa1313690:intron 40.0%
AGGCAGATGCAGATATTAAC+TGG + chr8_4:11757709-11757728 None:intergenic 40.0%
! AATGAGGCTTTTCCACCTAA+TGG - chr8_4:11758140-11758159 Msa1313690:CDS 40.0%
! CAAAAGATTGGTCCATTAGG+TGG + chr8_4:11758155-11758174 None:intergenic 40.0%
!! CACCTAATGGACCAATCTTT+TGG - chr8_4:11758153-11758172 Msa1313690:intron 40.0%
TTTGGATTTGTCTCTTCTCG+TGG - chr8_4:11758171-11758190 Msa1313690:intron 40.0%
TTGGATTTGTCTCTTCTCGT+GGG - chr8_4:11758172-11758191 Msa1313690:intron 40.0%
ATTTACTTTCCCTTGTCCCA+TGG - chr8_4:11758314-11758333 Msa1313690:intron 40.0%
AATCCAAATCCATGGGACAA+GGG + chr8_4:11758326-11758345 None:intergenic 40.0%
AAATCCAAATCCATGGGACA+AGG + chr8_4:11758327-11758346 None:intergenic 40.0%
TACTTTCAGGATAAAGCAGC+AGG + chr8_4:11758363-11758382 None:intergenic 40.0%
! TTTGTACACGGATTGAAGGT+CGG - chr8_4:11758605-11758624 Msa1313690:intron 40.0%
CTGACTGAAATTGTTGTGCA+TGG - chr8_4:11758913-11758932 Msa1313690:intron 40.0%
AGGTGATGTTTCTCACTAAG+TGG - chr8_4:11759053-11759072 Msa1313690:CDS 40.0%
AGTTCACAGTCCTTCAAAAG+TGG + chr8_4:11759191-11759210 None:intergenic 40.0%
AAGATAGATAAGGTAGGAGG+GGG + chr8_4:11759235-11759254 None:intergenic 40.0%
GGAAAGATAGATAAGGTAGG+AGG + chr8_4:11759238-11759257 None:intergenic 40.0%
! ACTTTTGACAGGATGCTTTG+AGG - chr8_4:11759332-11759351 Msa1313690:intron 40.0%
AGGAAGATCAGAATTACCCT+TGG + chr8_4:11759391-11759410 None:intergenic 40.0%
!! CCCAAAAGGACACTTTTTAC+TGG - chr8_4:11759495-11759514 Msa1313690:intron 40.0%
AGAAAATCAAGGCATGAAGC+TGG + chr8_4:11759560-11759579 None:intergenic 40.0%
GTCACTATTACATACACACC+TGG - chr8_4:11759679-11759698 Msa1313690:intron 40.0%
TCAGATGCATCATACCTTCA+AGG + chr8_4:11759922-11759941 None:intergenic 40.0%
! TGAAGGTATGATGCATCTGA+TGG - chr8_4:11759922-11759941 Msa1313690:CDS 40.0%
ACGAGAGAAGTGAGTGAAGA+AGG + chr8_4:11754477-11754496 None:intergenic 45.0%
TAGAGATGAGGATGTTGCGT+TGG - chr8_4:11755161-11755180 Msa1313690:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8_4:11755444-11755463 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8_4:11755445-11755464 None:intergenic 45.0%
GATAGCAATTGTGGTCTTCC+TGG - chr8_4:11755890-11755909 Msa1313690:intron 45.0%
! CAGTTAGTTTACTGCGCAGT+TGG - chr8_4:11756259-11756278 Msa1313690:intron 45.0%
AGTTTACTGCGCAGTTGGTT+AGG - chr8_4:11756264-11756283 Msa1313690:intron 45.0%
TCAATTCAAGGCCAGTTTCG+AGG - chr8_4:11756436-11756455 Msa1313690:intron 45.0%
ATACACTATGGACAACACCC+TGG + chr8_4:11756821-11756840 None:intergenic 45.0%
GATGTAGATCGCATTCTTGC+TGG - chr8_4:11757019-11757038 Msa1313690:intron 45.0%
TCTCATGCTGATGCAATTGG+AGG - chr8_4:11757148-11757167 Msa1313690:intron 45.0%
TATCAGCTCTGTACCTTCCT+CGG + chr8_4:11757644-11757663 None:intergenic 45.0%
TGGGCTTAAATCCTAACGAC+TGG - chr8_4:11758191-11758210 Msa1313690:intron 45.0%
GAAGAAGTTCACCAGTCGTT+AGG + chr8_4:11758205-11758224 None:intergenic 45.0%
GGGTTGTAAGCGTCTACTAT+AGG + chr8_4:11758227-11758246 None:intergenic 45.0%
ACGCTTACAACCCTTTCAGT+AGG - chr8_4:11758234-11758253 Msa1313690:intron 45.0%
CGCTTACAACCCTTTCAGTA+GGG - chr8_4:11758235-11758254 Msa1313690:intron 45.0%
GCTTACAACCCTTTCAGTAG+GGG - chr8_4:11758236-11758255 Msa1313690:intron 45.0%
TTTCCCTTGTCCCATGGATT+TGG - chr8_4:11758320-11758339 Msa1313690:intron 45.0%
!! AAGCAGCAGGTGCTATTAAC+AGG + chr8_4:11758350-11758369 None:intergenic 45.0%
! TGTAATCATACCTGGTGCTG+CGG - chr8_4:11758541-11758560 Msa1313690:intron 45.0%
GAAATTGTTGTGCATGGGCT+TGG - chr8_4:11758919-11758938 Msa1313690:intron 45.0%
AGTTTACTCCACTACCAGTG+TGG - chr8_4:11758976-11758995 Msa1313690:intron 45.0%
TGTGGCATGGTCAAGGTTAT+CGG - chr8_4:11758994-11759013 Msa1313690:intron 45.0%
ATGTGTAGCTGAAGAGCGAT+CGG + chr8_4:11759359-11759378 None:intergenic 45.0%
!! TCTTCCTTTTCAGGCCTTAG+AGG - chr8_4:11759455-11759474 Msa1313690:intron 45.0%
!! ACTTCCTCTAAGGCCTGAAA+AGG + chr8_4:11759462-11759481 None:intergenic 45.0%
GGAGGAAGATTATGCTGACA+TGG + chr8_4:11759539-11759558 None:intergenic 45.0%
AAATCAAGGCATGAAGCTGG+AGG + chr8_4:11759557-11759576 None:intergenic 45.0%
TACACACCTGGTATCGTTTG+CGG - chr8_4:11759691-11759710 Msa1313690:intron 45.0%
TGCAACTGGCTGCAGTATAA+AGG + chr8_4:11759811-11759830 None:intergenic 45.0%
TAAAGGTTCGGAACTGCAAC+TGG + chr8_4:11759825-11759844 None:intergenic 45.0%
ATGCGCAACTGAGCTATGAT+GGG - chr8_4:11759999-11760018 Msa1313690:CDS 45.0%
GAAAAAGGCAGAATAGCTGC+AGG + chr8_4:11760183-11760202 None:intergenic 45.0%
GGGAGAGAGAGGAAAAGAGA+TGG + chr8_4:11754541-11754560 None:intergenic 50.0%
GAGAGGTTACTGGAGTGGAT+GGG + chr8_4:11754561-11754580 None:intergenic 50.0%
AGAGAGGTTACTGGAGTGGA+TGG + chr8_4:11754562-11754581 None:intergenic 50.0%
AGAGAGAGAGGTTACTGGAG+TGG + chr8_4:11754566-11754585 None:intergenic 50.0%
GAGAGAGAGAGAGAGGTTAC+TGG + chr8_4:11754571-11754590 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr8_4:11754576-11754595 None:intergenic 50.0%
TGGTACAAACTAGCCCTAGG+TGG - chr8_4:11755266-11755285 Msa1313690:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_4:11755440-11755459 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8_4:11755446-11755465 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8_4:11755443-11755462 Msa1313690:intron 50.0%
TGCGCAGTTGGTTAGGAGTT+AGG - chr8_4:11756271-11756290 Msa1313690:intron 50.0%
TCCGGTGGTTTCCCGAATTT+GGG - chr8_4:11756551-11756570 Msa1313690:intron 50.0%
ACCCAAATTCGGGAAACCAC+CGG + chr8_4:11756555-11756574 None:intergenic 50.0%
ATATCTCGCGTCGTTTGTGC+AGG + chr8_4:11756752-11756771 None:intergenic 50.0%
TGTAGCCAAGCGTGACTTTG+AGG - chr8_4:11757359-11757378 Msa1313690:CDS 50.0%
ATCAGCTCTGTACCTTCCTC+GGG + chr8_4:11757643-11757662 None:intergenic 50.0%
TACAACCCTTTCAGTAGGGG+TGG - chr8_4:11758239-11758258 Msa1313690:intron 50.0%
TGTCACCACCCCTACTGAAA+GGG + chr8_4:11758247-11758266 None:intergenic 50.0%
ATGTCACCACCCCTACTGAA+AGG + chr8_4:11758248-11758267 None:intergenic 50.0%
TAACCTTGACCATGCCACAC+TGG + chr8_4:11758993-11759012 None:intergenic 50.0%
TGTGTAGCTGAAGAGCGATC+GGG + chr8_4:11759358-11759377 None:intergenic 50.0%
GACTGCGATTGATGCAGCAT+CGG + chr8_4:11759763-11759782 None:intergenic 50.0%
CATCAATCGCAGTCACCTTG+TGG - chr8_4:11759769-11759788 Msa1313690:intron 50.0%
TCTCGTTGTTGGCACCTTGA+AGG - chr8_4:11759905-11759924 Msa1313690:CDS 50.0%
CATAGCTCAGTTGCGCATCA+AGG + chr8_4:11759997-11760016 None:intergenic 50.0%
GATGCGCAACTGAGCTATGA+TGG - chr8_4:11759998-11760017 Msa1313690:CDS 50.0%
GGACGCAAACGGCGTGAATA+GGG + chr8_4:11754513-11754532 None:intergenic 55.0%
AGGACGCAAACGGCGTGAAT+AGG + chr8_4:11754514-11754533 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+CGG + chr8_4:11755432-11755451 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_4:11755432-11755451 Msa1313690:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr8_4:11755438-11755457 Msa1313690:intron 55.0%
CAGGGAGAACTCACTTTCCC+TGG + chr8_4:11756162-11756181 None:intergenic 55.0%
TCTATCACAGTGCTCTCCGG+TGG - chr8_4:11756536-11756555 Msa1313690:intron 55.0%
CTCCGGTGGTTTCCCGAATT+TGG - chr8_4:11756550-11756569 Msa1313690:intron 55.0%
CATGCTTCTCTCTTCTCCCC+AGG - chr8_4:11757282-11757301 Msa1313690:intron 55.0%
GAGGACCTCAAAGTCACGCT+TGG + chr8_4:11757367-11757386 None:intergenic 55.0%
AGAAGGAAAGAGCAGCGGAG+AGG + chr8_4:11757386-11757405 None:intergenic 55.0%
TCCTCGGGTAATCCCAGTGA+AGG + chr8_4:11757628-11757647 None:intergenic 55.0%
TCACTGGGATTACCCGAGGA+AGG - chr8_4:11757628-11757647 Msa1313690:intron 55.0%
ACTCCACTACCAGTGTGGCA+TGG - chr8_4:11758981-11759000 Msa1313690:intron 55.0%
TGACCATGCCACACTGGTAG+TGG + chr8_4:11758987-11759006 None:intergenic 55.0%
CTACCAGTGTGGCATGGTCA+AGG - chr8_4:11758987-11759006 Msa1313690:intron 55.0%
GGTCAAGGTTATCGGTCCCT+TGG - chr8_4:11759002-11759021 Msa1313690:CDS 55.0%
! CGGTCCCTTGGTTTCCGTTT+TGG - chr8_4:11759014-11759033 Msa1313690:CDS 55.0%
AGATAAGGTAGGAGGGGGAG+CGG + chr8_4:11759230-11759249 None:intergenic 55.0%
CTGGAGTGGATGGGAGAGAG+AGG + chr8_4:11754552-11754571 None:intergenic 60.0%
GTGTAGCCGACCCCACTTAG+TGG - chr8_4:11755431-11755450 Msa1313690:intron 60.0%
ATTCGCCACGCGAATGCCAC+AGG - chr8_4:11755648-11755667 Msa1313690:CDS 60.0%
GTGTTCCTGTGGCATTCGCG+TGG + chr8_4:11755656-11755675 None:intergenic 60.0%
GCCTTCACTGGGATTACCCG+AGG - chr8_4:11757624-11757643 Msa1313690:intron 60.0%
AATGCTGAGACCGCAGCACC+AGG + chr8_4:11758554-11758573 None:intergenic 60.0%
ACGCGACCGCAAACGATACC+AGG + chr8_4:11759700-11759719 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 11754382 11760314 11754382 ID=Msa1313690;Name=Msa1313690
chr8_4 mRNA 11754382 11760314 11754382 ID=Msa1313690-mRNA-1;Parent=Msa1313690;Name=Msa1313690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=62|1|1|1|0.81|0.91|12|269|340
chr8_4 exon 11754382 11754769 11754382 ID=Msa1313690-mRNA-1:exon:4441;Parent=Msa1313690-mRNA-1
chr8_4 exon 11755180 11755228 11755180 ID=Msa1313690-mRNA-1:exon:4440;Parent=Msa1313690-mRNA-1
chr8_4 exon 11755303 11755353 11755303 ID=Msa1313690-mRNA-1:exon:4439;Parent=Msa1313690-mRNA-1
chr8_4 exon 11755476 11755539 11755476 ID=Msa1313690-mRNA-1:exon:4438;Parent=Msa1313690-mRNA-1
chr8_4 exon 11755642 11755718 11755642 ID=Msa1313690-mRNA-1:exon:4437;Parent=Msa1313690-mRNA-1
chr8_4 exon 11756074 11756193 11756074 ID=Msa1313690-mRNA-1:exon:4436;Parent=Msa1313690-mRNA-1
chr8_4 exon 11757316 11757392 11757316 ID=Msa1313690-mRNA-1:exon:4435;Parent=Msa1313690-mRNA-1
chr8_4 exon 11757527 11757582 11757527 ID=Msa1313690-mRNA-1:exon:4434;Parent=Msa1313690-mRNA-1
chr8_4 exon 11758124 11758165 11758124 ID=Msa1313690-mRNA-1:exon:4433;Parent=Msa1313690-mRNA-1
chr8_4 exon 11758996 11759108 11758996 ID=Msa1313690-mRNA-1:exon:4432;Parent=Msa1313690-mRNA-1
chr8_4 exon 11759898 11760025 11759898 ID=Msa1313690-mRNA-1:exon:4431;Parent=Msa1313690-mRNA-1
chr8_4 exon 11760126 11760314 11760126 ID=Msa1313690-mRNA-1:exon:4430;Parent=Msa1313690-mRNA-1
chr8_4 five_prime_UTR 11760253 11760314 11760253 ID=Msa1313690-mRNA-1:five_prime_utr;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11760126 11760252 11760126 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11759898 11760025 11759898 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11758996 11759108 11758996 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11758124 11758165 11758124 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11757527 11757582 11757527 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11757316 11757392 11757316 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11756074 11756193 11756074 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11755642 11755718 11755642 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11755476 11755539 11755476 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11755303 11755353 11755303 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11755180 11755228 11755180 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 CDS 11754651 11754769 11754651 ID=Msa1313690-mRNA-1:cds;Parent=Msa1313690-mRNA-1
chr8_4 three_prime_UTR 11754382 11754650 11754382 ID=Msa1313690-mRNA-1:three_prime_utr;Parent=Msa1313690-mRNA-1
Gene Sequence

>Msa1313690

ATGGTGGTTAACTCTATTCGTCTTCTTCTTCCTTCTTCACTCACTTCTCTCGTTCATCATCGCTCTCCCTATTCACGCCGTTTGCGTCCTTTTTCCATCTCTTTTCCTCTCTCTCCCATCCACTCCATTTCTTCCAATGGAATTGGTGATGTTGAATTACCAGTTGATCAATCACAAGTTATATTCATTGGAACTGGAACTAGTGAAGGAATTCCGAGAGTTAGCTGCTTGACTAATCCTTCTACTAAATGTCCGGTTTGTACAAAAGCTGCTAAACCGGGTGATAAGAATAGGAGACTTAACACAAGCATACTCATTCGCCACGCGAATGCCACAGGAACACACAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCGGTGGTTTCCCGAATTTGGGATAAGAACACTTGATGCCGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTTGATGATCTTAGAGACTGGACTAACAATGTTCAGCCCTCCATTCCAATTTATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTTGATACAAGTGTAATCATACCTGGTGCTGCGGTCTCAGCATTGCAATTCAATAGCATATCTGAAGAACCTTTTTTTGTACACGGATTGAAGTTTACTCCACTACCAGTGTGGCATGGTCAAGGTTATCGGTCCCTTGGTTTCCGTTTTGGTAATATATGTTACATAAGTGATGTCAGTGAAATTCCTGAAGAAACTTATCCACTTTTGAAGGACTGTGAACTTCTAATAATGGATGCTTTGAGGCCCGATCGCTCTTCAGCTACACATTTTGGACTTCCAAGGGCCTTAGAGGAAGTGAGAAAAATTCAACCCAAAAGGACACTTTTTACTGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTACCTTACAAAATTATTGGAGTCTGAGGGCCTTGATGCGCAACTGAGCTATGATGGGCTTTGTATAGCAGTCAGACTCTAA

Protein sequence

>Msa1313690

MVVNSIRLLLPSSLTSLVHHRSPYSRRLRPFSISFPLSPIHSISSNGIGDVELPVDQSQVIFIGTGTSEGIPRVSCLTNPSTKCPVCTKAAKPGDKNRRLNTSILIRHANATGTHNILIDAGKFFYHSALRWFPEFGIRTLDAVIITHSHADAIGGLDDLRDWTNNVQPSIPIYVAKRDFEVMKKTHYYLVDTSVIIPGAAVSALQFNSISEEPFFVHGLKFTPLPVWHGQGYRSLGFRFGNICYISDVSEIPEETYPLLKDCELLIMDALRPDRSSATHFGLPRALEEVRKIQPKRTLFTGMMHLMDHEEVNDYLTKLLESEGLDAQLSYDGLCIAVRL*