AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019980 MtrunA17_Chr5g0447341 95.050 101 5 0 125 225 377 477 2.53e-59 196
Msa0019980 MtrunA17_Chr3g0120471 84.158 101 13 1 125 225 376 473 1.11e-50 173
Msa0019980 MtrunA17_Chr7g0271011 48.000 100 52 0 125 224 398 497 3.44e-28 112
Msa0019980 MtrunA17_Chr3g0144731 47.000 100 53 0 125 224 23 122 5.26e-28 105
Msa0019980 MtrunA17_Chr3g0141761 44.444 99 55 0 125 223 392 490 2.10e-26 107
Msa0019980 MtrunA17_Chr4g0074531 50.000 104 52 0 121 224 379 482 4.90e-26 106
Msa0019980 MtrunA17_Chr4g0035171 45.000 100 55 0 125 224 390 489 3.73e-24 101
Msa0019980 MtrunA17_Chr4g0077071 88.000 50 6 0 125 174 32 81 8.80e-24 92.0
Msa0019980 MtrunA17_Chr6g0454161 84.314 51 8 0 171 221 125 175 6.40e-22 93.2
Msa0019980 MtrunA17_Chr4g0033371 94.118 34 2 0 226 259 421 454 1.27e-14 73.6
Msa0019980 MtrunA17_Chr5g0441571 65.455 55 15 1 37 91 178 228 1.25e-12 67.4
Msa0019980 MtrunA17_Chr5g0441651 49.333 75 37 1 17 91 163 236 1.82e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019980 AT5G48300.1 84.158 101 16 0 125 225 382 482 5.21e-53 180
Msa0019980 AT1G27680.1 45.794 107 57 1 125 230 380 486 1.97e-27 110
Msa0019980 AT5G19220.1 47.115 104 55 0 121 224 380 483 2.49e-26 107
Msa0019980 AT2G21590.2 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.3 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.5 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.4 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.7 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.1 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT2G21590.6 44.000 100 56 0 125 224 385 484 1.56e-24 102
Msa0019980 AT4G39210.2 46.000 100 54 0 125 224 383 482 1.05e-23 100
Msa0019980 AT4G39210.1 46.000 100 54 0 125 224 383 482 1.05e-23 100
Msa0019980 AT1G05610.1 50.000 104 50 1 123 224 334 437 4.93e-22 95.5
Msa0019980 AT1G05610.2 50.000 104 50 1 123 224 340 443 5.52e-22 95.1

Find 99 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 1_1:+34910158 Msa0019980:three_prime_UTR
AACTAAGCTTTCTTTGAATA+AGG 0.220801 1_1:-34903823 None:intergenic
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 1_1:+34903684 Msa0019980:five_prime_UTR
AGAAAGCTTAGTTGAAAGTA+TGG 0.284728 1_1:+34903833 Msa0019980:five_prime_UTR
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 1_1:+34909996 Msa0019980:three_prime_UTR
GCATGAGTGATGAAGCAATA+TGG 0.296665 1_1:+34907261 Msa0019980:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 1_1:+34908400 Msa0019980:CDS
CCGGGGTTATCAGTACTCTT+TGG 0.325235 1_1:+34904384 Msa0019980:intron
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 1_1:-34903679 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 1_1:+34903874 Msa0019980:five_prime_UTR
GATGAACTCTTCACATTTGA+AGG 0.374057 1_1:-34909507 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 1_1:+34909755 Msa0019980:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 1_1:+34903512 Msa0019980:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 1_1:+34908380 Msa0019980:CDS
CGTCTATGTTTCTTAATCTC+AGG 0.392267 1_1:+34904761 Msa0019980:CDS
GGGCTGCATTCTTGCATATC+AGG 0.392587 1_1:+34908567 Msa0019980:CDS
TTACATAGAACATACCTTAT+GGG 0.397491 1_1:-34904237 None:intergenic
TATTGAAGACACTTTGTTGA+TGG 0.401901 1_1:+34908599 Msa0019980:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 1_1:+34908896 Msa0019980:CDS
GGCAGTGTTCCAATTGGTAT+TGG 0.426491 1_1:+34908845 Msa0019980:CDS
ACGAAGGGACCGAGAGAAAC+GGG 0.430431 1_1:+34903555 Msa0019980:five_prime_UTR
GCATGCCGCTGAATAATTAG+TGG 0.431613 1_1:-34909943 None:intergenic
CTCATGCTTTCTTCATCCCC+TGG 0.434251 1_1:-34907245 None:intergenic
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 1_1:+34903511 Msa0019980:five_prime_UTR
AAATTGCATGTCGTTAGAAA+AGG 0.441642 1_1:+34903486 Msa0019980:five_prime_UTR
ACGGGAACGGGAGAGGAAGA+AGG 0.442996 1_1:+34903573 Msa0019980:five_prime_UTR
CATGAGTGATGAAGCAATAT+GGG 0.445860 1_1:+34907262 Msa0019980:CDS
AACGAAGGGACCGAGAGAAA+CGG 0.452796 1_1:+34903554 Msa0019980:five_prime_UTR
GGGGTTGGGTTTGCAATTGG+AGG 0.457079 1_1:+34903855 Msa0019980:five_prime_UTR
TTATCCAAGTCGACATCGTT+GGG 0.457199 1_1:-34909586 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 1_1:+34909748 Msa0019980:three_prime_UTR
CTTTGGTTCATGCAGCTGCT+TGG 0.464450 1_1:+34904401 Msa0019980:CDS
CTGAATTTCAAATTGCATGT+GGG 0.467504 1_1:+34909867 Msa0019980:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 1_1:+34909588 Msa0019980:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 1_1:+34908381 Msa0019980:CDS
TCTCCCGTTCCCGTTTCTCT+CGG 0.471343 1_1:-34903564 None:intergenic
GAAAGCTTAGTTGAAAGTAT+GGG 0.474338 1_1:+34903834 Msa0019980:five_prime_UTR
GGACCGAGAGAAACGGGAAC+GGG 0.475016 1_1:+34903561 Msa0019980:five_prime_UTR
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 1_1:+34903434 Msa0019980:five_prime_UTR
GAGAGAAACGGGAACGGGAG+AGG 0.478946 1_1:+34903566 Msa0019980:five_prime_UTR
TATGATAATTTCATCCCATA+AGG 0.480276 1_1:+34904223 Msa0019980:exon
ATGTGTAAAGCTCTAATGCC+AGG 0.481314 1_1:+34907227 Msa0019980:CDS
GAGTTTCTGCCAATACCAAT+TGG 0.481399 1_1:-34908854 None:intergenic
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 1_1:+34904857 Msa0019980:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 1_1:+34903602 Msa0019980:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 1_1:+34903877 Msa0019980:five_prime_UTR
CGGGAACGGGAGAGGAAGAA+GGG 0.495297 1_1:+34903574 Msa0019980:five_prime_UTR
AAATCTTCCATTCAGTGGTC+GGG 0.496565 1_1:+34908547 Msa0019980:CDS
AGTGTTCACATGAGAAGGCT+TGG 0.497606 1_1:+34909536 Msa0019980:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 1_1:+34903427 None:intergenic
TTATGAAGAGGATTTGAAGC+TGG 0.505390 1_1:+34904598 Msa0019980:CDS
CATTCCCAACGATGTCGACT+TGG 0.506190 1_1:+34909582 Msa0019980:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 1_1:+34903596 Msa0019980:five_prime_UTR
GCTTCAGAATGACAAATCTA+CGG 0.511046 1_1:+34909817 Msa0019980:three_prime_UTR
ATTGAAGACACTTTGTTGAT+GGG 0.519372 1_1:+34908600 Msa0019980:CDS
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 1_1:+34903590 Msa0019980:five_prime_UTR
GCTAAAGGCAGTGTTCCAAT+TGG 0.523154 1_1:+34908839 Msa0019980:CDS
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 1_1:+34903530 Msa0019980:five_prime_UTR
CTTATCCAAGTCGACATCGT+TGG 0.524700 1_1:-34909587 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 1_1:+34903487 Msa0019980:five_prime_UTR
AATGCAGCCCGACCACTGAA+TGG 0.527020 1_1:-34908554 None:intergenic
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 1_1:+34903435 Msa0019980:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 1_1:+34903601 Msa0019980:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 1_1:+34909531 Msa0019980:CDS
AAAGCTTAGTTGAAAGTATG+GGG 0.537637 1_1:+34903835 Msa0019980:five_prime_UTR
ACTGAATTTCAAATTGCATG+TGG 0.539019 1_1:+34909866 Msa0019980:three_prime_UTR
CTTCAGAATGACAAATCTAC+GGG 0.541546 1_1:+34909818 Msa0019980:three_prime_UTR
AAAATCTTCCATTCAGTGGT+CGG 0.542562 1_1:+34908546 Msa0019980:CDS
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 1_1:-34903661 None:intergenic
CAACATTGAAGATTATGAAG+AGG 0.549840 1_1:+34904586 Msa0019980:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 1_1:-34909898 None:intergenic
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 1_1:+34904871 Msa0019980:CDS
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 1_1:+34903539 Msa0019980:five_prime_UTR
CCTCACACTTTCTTCAGATG+AGG 0.567909 1_1:-34910028 None:intergenic
GGGACCGAGAGAAACGGGAA+CGG 0.573245 1_1:+34903560 Msa0019980:five_prime_UTR
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 1_1:+34903540 Msa0019980:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 1_1:+34908386 Msa0019980:CDS
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 1_1:+34904550 Msa0019980:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 1_1:+34903438 Msa0019980:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 1_1:+34904542 Msa0019980:CDS
TGTGTAAAGCTCTAATGCCA+GGG 0.600360 1_1:+34907228 Msa0019980:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 1_1:-34908356 None:intergenic
CTGCATTCTTGCATATCAGG+AGG 0.603428 1_1:+34908570 Msa0019980:CDS
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 1_1:+34903531 Msa0019980:five_prime_UTR
CTGCAAAATCTTCCATTCAG+TGG 0.616752 1_1:+34908542 Msa0019980:CDS
GTGTTGGACGGCGAAGTCGA+CGG 0.622554 1_1:-34903645 None:intergenic
AAGCTTAGTTGAAAGTATGG+GGG 0.640008 1_1:+34903836 Msa0019980:five_prime_UTR
AAGGCAATGATGAAGACAAG+AGG 0.640920 1_1:+34909741 Msa0019980:three_prime_UTR
TGAATTTCAAATTGCATGTG+GGG 0.642872 1_1:+34909868 Msa0019980:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 1_1:+34908910 Msa0019980:CDS
CTGTACCACTAATTATTCAG+CGG 0.654884 1_1:+34909938 Msa0019980:three_prime_UTR
AACTAGATAAGTCTTTGATG+AGG 0.666431 1_1:+34905605 Msa0019980:CDS
TATCACTGATAGTGTTATCG+GGG 0.674328 1_1:+34908382 Msa0019980:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 1_1:-34903657 None:intergenic
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 1_1:+34910028 Msa0019980:three_prime_UTR
GTGTAAAGCTCTAATGCCAG+GGG 0.691914 1_1:+34907229 Msa0019980:CDS
TTGGACGGCGAAGTCGACGG+CGG 0.710048 1_1:-34903642 None:intergenic
GAATTTCAAATTGCATGTGG+GGG 0.716284 1_1:+34909869 Msa0019980:three_prime_UTR
GATGGGCGCAGATTATTACG+AGG 0.733243 1_1:+34908617 Msa0019980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + chr1_1:34905235-34905254 Msa0019980:intron 10.0%
!! TGGAATTTAAAAAAAATATT+TGG + chr1_1:34906408-34906427 Msa0019980:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + chr1_1:34907340-34907359 Msa0019980:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - chr1_1:34909363-34909382 None:intergenic 10.0%
!! AAATTGAATGTAAAAATTGT+AGG + chr1_1:34904270-34904289 Msa0019980:intron 15.0%
!! AATTGAATGTAAAAATTGTA+GGG + chr1_1:34904271-34904290 Msa0019980:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - chr1_1:34904363-34904382 None:intergenic 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + chr1_1:34904451-34904470 Msa0019980:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG - chr1_1:34904675-34904694 None:intergenic 15.0%
!!! GTATTGATTTATTTATTTCT+GGG + chr1_1:34905744-34905763 Msa0019980:intron 15.0%
!!! TATTGATAATTTTTGATTTG+TGG + chr1_1:34906335-34906354 Msa0019980:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG + chr1_1:34906417-34906436 Msa0019980:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG + chr1_1:34906832-34906851 Msa0019980:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG + chr1_1:34909442-34909461 Msa0019980:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + chr1_1:34909692-34909711 Msa0019980:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG + chr1_1:34910158-34910177 Msa0019980:three_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG - chr1_1:34903773-34903792 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG + chr1_1:34903773-34903792 Msa0019980:intron 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG + chr1_1:34904309-34904328 Msa0019980:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+CGG + chr1_1:34904365-34904384 Msa0019980:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - chr1_1:34904699-34904718 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + chr1_1:34905084-34905103 Msa0019980:intron 20.0%
!! TAAAAAACTTACACTTTAGT+AGG - chr1_1:34905378-34905397 None:intergenic 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - chr1_1:34905417-34905436 None:intergenic 20.0%
!! TTAGTGCAATATATATATCA+AGG + chr1_1:34905446-34905465 Msa0019980:intron 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - chr1_1:34905539-34905558 None:intergenic 20.0%
!!! GGTATTGATTTATTTATTTC+TGG + chr1_1:34905743-34905762 Msa0019980:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + chr1_1:34906019-34906038 Msa0019980:intron 20.0%
!! TCGAATTTGGAAAAAAAAAT+TGG + chr1_1:34906108-34906127 Msa0019980:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + chr1_1:34906388-34906407 Msa0019980:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - chr1_1:34907737-34907756 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - chr1_1:34907764-34907783 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + chr1_1:34908117-34908136 Msa0019980:intron 20.0%
!! AGATGTCAAATATGATTAAA+TGG + chr1_1:34908478-34908497 Msa0019980:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - chr1_1:34908969-34908988 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - chr1_1:34909353-34909372 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + chr1_1:34909696-34909715 Msa0019980:intron 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG - chr1_1:34903682-34903701 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG + chr1_1:34903684-34903703 Msa0019980:five_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG - chr1_1:34903772-34903791 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG - chr1_1:34903774-34903793 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG + chr1_1:34903772-34903791 Msa0019980:intron 25.0%
! AACTAAGCTTTCTTTGAATA+AGG - chr1_1:34903826-34903845 None:intergenic 25.0%
! TGTAAATCATTTCTGTTTGA+TGG + chr1_1:34903920-34903939 Msa0019980:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG + chr1_1:34903969-34903988 Msa0019980:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG - chr1_1:34904056-34904075 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG + chr1_1:34904055-34904074 Msa0019980:intron 25.0%
!! TTTTACCAAATCAGATACAA+AGG - chr1_1:34904063-34904082 None:intergenic 25.0%
! AAAAAGCTATTTGACAATAC+TGG - chr1_1:34904091-34904110 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG + chr1_1:34904223-34904242 Msa0019980:exon 25.0%
! TTACATAGAACATACCTTAT+GGG - chr1_1:34904240-34904259 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - chr1_1:34904241-34904260 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + chr1_1:34904332-34904351 Msa0019980:intron 25.0%
!!! ATGTTGAGAATATTTTTTCC+GGG + chr1_1:34904366-34904385 Msa0019980:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + chr1_1:34904717-34904736 Msa0019980:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + chr1_1:34905314-34905333 Msa0019980:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG - chr1_1:34905322-34905341 None:intergenic 25.0%
!!! AAGTTTTTTAACACTGTCAT+AGG + chr1_1:34905388-34905407 Msa0019980:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - chr1_1:34905595-34905614 None:intergenic 25.0%
!! GTTATTGAAAGTTTTGCAAA+TGG + chr1_1:34905722-34905741 Msa0019980:intron 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG + chr1_1:34905749-34905768 Msa0019980:intron 25.0%
! TAAAGTCTAATTGATACTGA+TGG + chr1_1:34905929-34905948 Msa0019980:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + chr1_1:34906027-34906046 Msa0019980:intron 25.0%
! CTAAAAACATACACAATCTA+AGG - chr1_1:34906279-34906298 None:intergenic 25.0%
!!! TGATAATTTTTGATTTGTGG+TGG + chr1_1:34906338-34906357 Msa0019980:intron 25.0%
! TTGAGTGAAAATTGAACAAT+TGG + chr1_1:34906590-34906609 Msa0019980:intron 25.0%
! GACAAAATTTAACACGAAAT+AGG + chr1_1:34906619-34906638 Msa0019980:intron 25.0%
! GTAAAAATCTGAACTATTGT+TGG + chr1_1:34906709-34906728 Msa0019980:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - chr1_1:34906787-34906806 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + chr1_1:34906797-34906816 Msa0019980:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + chr1_1:34906803-34906822 Msa0019980:intron 25.0%
! AATGTTCATGGTGAAATATT+TGG + chr1_1:34906913-34906932 Msa0019980:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + chr1_1:34907400-34907419 Msa0019980:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG + chr1_1:34907771-34907790 Msa0019980:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG + chr1_1:34907948-34907967 Msa0019980:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG - chr1_1:34907965-34907984 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + chr1_1:34908251-34908270 Msa0019980:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + chr1_1:34908274-34908293 Msa0019980:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + chr1_1:34908275-34908294 Msa0019980:intron 25.0%
!!! AAAAGTTTTTTAGCTGCTAA+AGG + chr1_1:34908824-34908843 Msa0019980:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - chr1_1:34908970-34908989 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + chr1_1:34908996-34909015 Msa0019980:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - chr1_1:34909049-34909068 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - chr1_1:34909174-34909193 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + chr1_1:34909722-34909741 Msa0019980:exon 25.0%
AAATTGCATGTCGTTAGAAA+AGG + chr1_1:34903486-34903505 Msa0019980:five_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG + chr1_1:34903487-34903506 Msa0019980:five_prime_UTR 30.0%
AGAAAGCTTAGTTGAAAGTA+TGG + chr1_1:34903833-34903852 Msa0019980:five_prime_UTR 30.0%
! GAAAGCTTAGTTGAAAGTAT+GGG + chr1_1:34903834-34903853 Msa0019980:five_prime_UTR 30.0%
! AAAGCTTAGTTGAAAGTATG+GGG + chr1_1:34903835-34903854 Msa0019980:five_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG + chr1_1:34903968-34903987 Msa0019980:intron 30.0%
TAAGAAGATACATAGGGATA+TGG + chr1_1:34903975-34903994 Msa0019980:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG + chr1_1:34903994-34904013 Msa0019980:intron 30.0%
!! CTAGAAGTGTCTTGAAAAAA+AGG - chr1_1:34904194-34904213 None:intergenic 30.0%
!!! TGTTGAGAATATTTTTTCCG+GGG + chr1_1:34904367-34904386 Msa0019980:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + chr1_1:34904586-34904605 Msa0019980:CDS 30.0%
TGTGATTTAAATGAGTTTGG+AGG + chr1_1:34904720-34904739 Msa0019980:intron 30.0%
AGTTTGGAGGAATTAATTTC+AGG + chr1_1:34904733-34904752 Msa0019980:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + chr1_1:34904787-34904806 Msa0019980:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG + chr1_1:34904797-34904816 Msa0019980:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG + chr1_1:34904808-34904827 Msa0019980:CDS 30.0%
AAAAAAACTTACCATCGCTA+AGG - chr1_1:34904885-34904904 None:intergenic 30.0%
!! GCTTTGTTTATTATGCATTC+AGG + chr1_1:34905273-34905292 Msa0019980:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + chr1_1:34905470-34905489 Msa0019980:intron 30.0%
AACTAGATAAGTCTTTGATG+AGG + chr1_1:34905605-34905624 Msa0019980:CDS 30.0%
! TAAGTCTTTGATGAGGTATT+TGG + chr1_1:34905612-34905631 Msa0019980:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + chr1_1:34905695-34905714 Msa0019980:intron 30.0%
AACCATCATACACATAAGAA+AGG - chr1_1:34905791-34905810 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG + chr1_1:34905797-34905816 Msa0019980:intron 30.0%
TGTTGTTAAAAGCTTTGCTT+TGG + chr1_1:34905823-34905842 Msa0019980:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - chr1_1:34905966-34905985 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + chr1_1:34906039-34906058 Msa0019980:intron 30.0%
! TTCAACTGAGTTTTCGAATT+TGG + chr1_1:34906095-34906114 Msa0019980:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + chr1_1:34906290-34906309 Msa0019980:intron 30.0%
! TCAATAGAAAGCATGAACAA+AGG - chr1_1:34906321-34906340 None:intergenic 30.0%
!!! TAATTTTTGATTTGTGGTGG+AGG + chr1_1:34906341-34906360 Msa0019980:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + chr1_1:34906437-34906456 Msa0019980:intron 30.0%
TACAAACCAATTGATAGAGA+AGG + chr1_1:34906468-34906487 Msa0019980:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG - chr1_1:34906477-34906496 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG + chr1_1:34906478-34906497 Msa0019980:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG + chr1_1:34906505-34906524 Msa0019980:intron 30.0%
TAGACCAACTGTTAGAAAAA+TGG + chr1_1:34906540-34906559 Msa0019980:intron 30.0%
!! ATGACCATTTTTCTAACAGT+TGG - chr1_1:34906547-34906566 None:intergenic 30.0%
AAAATCTGCTCTAATGTAGT+TGG + chr1_1:34906890-34906909 Msa0019980:intron 30.0%
TAATGTAGTTGGAATGTTCA+TGG + chr1_1:34906901-34906920 Msa0019980:intron 30.0%
AATCCTTATCATTTCAATCC+GGG - chr1_1:34906946-34906965 None:intergenic 30.0%
CAATCCTTATCATTTCAATC+CGG - chr1_1:34906947-34906966 None:intergenic 30.0%
! TCATAAACACATTTTACCCA+AGG - chr1_1:34907118-34907137 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + chr1_1:34907446-34907465 Msa0019980:intron 30.0%
AATGAAGAACAACATAGAGA+TGG - chr1_1:34907552-34907571 None:intergenic 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - chr1_1:34907730-34907749 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + chr1_1:34907835-34907854 Msa0019980:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - chr1_1:34907890-34907909 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG - chr1_1:34907918-34907937 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG - chr1_1:34907919-34907938 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG + chr1_1:34908380-34908399 Msa0019980:CDS 30.0%
! ATATCACTGATAGTGTTATC+GGG + chr1_1:34908381-34908400 Msa0019980:CDS 30.0%
TATTGAAGACACTTTGTTGA+TGG + chr1_1:34908599-34908618 Msa0019980:CDS 30.0%
ATTGAAGACACTTTGTTGAT+GGG + chr1_1:34908600-34908619 Msa0019980:CDS 30.0%
AGAAAATCAATGTTGCAGTT+AGG - chr1_1:34908783-34908802 None:intergenic 30.0%
! AACAATTGCTCTTTTGATAC+GGG - chr1_1:34908879-34908898 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG - chr1_1:34908880-34908899 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG + chr1_1:34908910-34908929 Msa0019980:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - chr1_1:34908948-34908967 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG - chr1_1:34908988-34909007 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + chr1_1:34909177-34909196 Msa0019980:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG + chr1_1:34909244-34909263 Msa0019980:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - chr1_1:34909308-34909327 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG + chr1_1:34909310-34909329 Msa0019980:intron 30.0%
TTGTTAAAGCTATCTGAATC+TGG - chr1_1:34909387-34909406 None:intergenic 30.0%
! GGTTATTAATTGATGACAAC+AGG + chr1_1:34909463-34909482 Msa0019980:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG + chr1_1:34909866-34909885 Msa0019980:three_prime_UTR 30.0%
CTGAATTTCAAATTGCATGT+GGG + chr1_1:34909867-34909886 Msa0019980:three_prime_UTR 30.0%
TGAATTTCAAATTGCATGTG+GGG + chr1_1:34909868-34909887 Msa0019980:three_prime_UTR 30.0%
TATGATATGTACTCAGAACT+TGG - chr1_1:34909901-34909920 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG + chr1_1:34910005-34910024 Msa0019980:three_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG + chr1_1:34903512-34903531 Msa0019980:five_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - chr1_1:34903762-34903781 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - chr1_1:34903763-34903782 None:intergenic 35.0%
! AAGCTTAGTTGAAAGTATGG+GGG + chr1_1:34903836-34903855 Msa0019980:five_prime_UTR 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + chr1_1:34903874-34903893 Msa0019980:five_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG + chr1_1:34903877-34903896 Msa0019980:five_prime_UTR 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + chr1_1:34904550-34904569 Msa0019980:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+TGG + chr1_1:34904598-34904617 Msa0019980:CDS 35.0%
! ATTTGAAGCTGGTGAGTTAT+GGG + chr1_1:34904609-34904628 Msa0019980:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + chr1_1:34904761-34904780 Msa0019980:CDS 35.0%
!! TAGTTCTGATTATTGCGATC+TGG + chr1_1:34904964-34904983 Msa0019980:intron 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + chr1_1:34905167-34905186 Msa0019980:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + chr1_1:34905183-34905202 Msa0019980:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - chr1_1:34905370-34905389 None:intergenic 35.0%
!! TGGCTATTTCTTCTTGTGAT+TGG + chr1_1:34905490-34905509 Msa0019980:intron 35.0%
TTGGATTGATGAAGTTGAAG+AGG + chr1_1:34905509-34905528 Msa0019980:intron 35.0%
TGGATTGATGAAGTTGAAGA+GGG + chr1_1:34905510-34905529 Msa0019980:intron 35.0%
TGCCTTTCTTATGTGTATGA+TGG + chr1_1:34905786-34905805 Msa0019980:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + chr1_1:34906169-34906188 Msa0019980:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + chr1_1:34906251-34906270 Msa0019980:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG + chr1_1:34906484-34906503 Msa0019980:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG + chr1_1:34906487-34906506 Msa0019980:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG + chr1_1:34906625-34906644 Msa0019980:intron 35.0%
TATCTCTCTGTTCATACATC+AGG + chr1_1:34906744-34906763 Msa0019980:intron 35.0%
! TTCATACATCAGGTTGCAAT+AGG + chr1_1:34906754-34906773 Msa0019980:intron 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + chr1_1:34907065-34907084 Msa0019980:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - chr1_1:34907113-34907132 None:intergenic 35.0%
CATGAGTGATGAAGCAATAT+GGG + chr1_1:34907262-34907281 Msa0019980:CDS 35.0%
!!! TCTGTTTGTTGTAGCACTTT+TGG + chr1_1:34907522-34907541 Msa0019980:intron 35.0%
!!! CTGTTTGTTGTAGCACTTTT+GGG + chr1_1:34907523-34907542 Msa0019980:intron 35.0%
ATGCTAGAACTGATGATTCA+TGG - chr1_1:34907582-34907601 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + chr1_1:34907581-34907600 Msa0019980:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG - chr1_1:34907657-34907676 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG - chr1_1:34907658-34907677 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG + chr1_1:34907776-34907795 Msa0019980:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG + chr1_1:34907987-34908006 Msa0019980:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - chr1_1:34908332-34908351 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG + chr1_1:34908382-34908401 Msa0019980:CDS 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - chr1_1:34908538-34908557 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+CGG + chr1_1:34908546-34908565 Msa0019980:CDS 35.0%
ATGCAGCTCAATTCATTCAT+TGG + chr1_1:34908732-34908751 Msa0019980:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + chr1_1:34908750-34908769 Msa0019980:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + chr1_1:34908896-34908915 Msa0019980:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + chr1_1:34909100-34909119 Msa0019980:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + chr1_1:34909168-34909187 Msa0019980:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + chr1_1:34909320-34909339 Msa0019980:intron 35.0%
GATGAACTCTTCACATTTGA+AGG - chr1_1:34909510-34909529 None:intergenic 35.0%
GCTTCAGAATGACAAATCTA+CGG + chr1_1:34909817-34909836 Msa0019980:three_prime_UTR 35.0%
CTTCAGAATGACAAATCTAC+GGG + chr1_1:34909818-34909837 Msa0019980:three_prime_UTR 35.0%
GAATTTCAAATTGCATGTGG+GGG + chr1_1:34909869-34909888 Msa0019980:three_prime_UTR 35.0%
CTGTACCACTAATTATTCAG+CGG + chr1_1:34909938-34909957 Msa0019980:three_prime_UTR 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + chr1_1:34909996-34910015 Msa0019980:three_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG + chr1_1:34903511-34903530 Msa0019980:five_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG + chr1_1:34903675-34903694 Msa0019980:five_prime_UTR 40.0%
! TTAGTTGAAAGTATGGGGGT+TGG + chr1_1:34903840-34903859 Msa0019980:five_prime_UTR 40.0%
! TAGTTGAAAGTATGGGGGTT+GGG + chr1_1:34903841-34903860 Msa0019980:five_prime_UTR 40.0%
GAATTTGATCTGAATGGTGC+TGG + chr1_1:34904000-34904019 Msa0019980:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + chr1_1:34904542-34904561 Msa0019980:CDS 40.0%
! GATTTGAAGCTGGTGAGTTA+TGG + chr1_1:34904608-34904627 Msa0019980:intron 40.0%
! TTTGAAGCTGGTGAGTTATG+GGG + chr1_1:34904610-34904629 Msa0019980:intron 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + chr1_1:34904857-34904876 Msa0019980:CDS 40.0%
TGATGTTGGCAACTTTGTGA+TGG + chr1_1:34905249-34905268 Msa0019980:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + chr1_1:34905289-34905308 Msa0019980:intron 40.0%
ACCATCATAGACCAGTCATT+GGG - chr1_1:34905688-34905707 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG - chr1_1:34905689-34905708 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + chr1_1:34905877-34905896 Msa0019980:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + chr1_1:34906992-34907011 Msa0019980:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + chr1_1:34906993-34907012 Msa0019980:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + chr1_1:34907028-34907047 Msa0019980:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - chr1_1:34907097-34907116 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + chr1_1:34907098-34907117 Msa0019980:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + chr1_1:34907099-34907118 Msa0019980:intron 40.0%
! ATGTGTAAAGCTCTAATGCC+AGG + chr1_1:34907227-34907246 Msa0019980:CDS 40.0%
! TGTGTAAAGCTCTAATGCCA+GGG + chr1_1:34907228-34907247 Msa0019980:CDS 40.0%
GCATGAGTGATGAAGCAATA+TGG + chr1_1:34907261-34907280 Msa0019980:CDS 40.0%
TATGGGAAACTCTTCGTGTA+AGG + chr1_1:34907279-34907298 Msa0019980:intron 40.0%
CATAGTTGCAAAACTCCAAG+GGG - chr1_1:34907656-34907675 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - chr1_1:34907910-34907929 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - chr1_1:34907983-34908002 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - chr1_1:34908048-34908067 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG + chr1_1:34908542-34908561 Msa0019980:CDS 40.0%
AAATCTTCCATTCAGTGGTC+GGG + chr1_1:34908547-34908566 Msa0019980:CDS 40.0%
GAGTTTCTGCCAATACCAAT+TGG - chr1_1:34908857-34908876 None:intergenic 40.0%
GACCAAAGATTAGGAACAGA+GGG - chr1_1:34909040-34909059 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - chr1_1:34909041-34909060 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG - chr1_1:34909318-34909337 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG + chr1_1:34909476-34909495 Msa0019980:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG + chr1_1:34909482-34909501 Msa0019980:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG + chr1_1:34909531-34909550 Msa0019980:CDS 40.0%
TTATCCAAGTCGACATCGTT+GGG - chr1_1:34909589-34909608 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + chr1_1:34909741-34909760 Msa0019980:three_prime_UTR 40.0%
TGATGAAGACAAGAGGAGAT+TGG + chr1_1:34909748-34909767 Msa0019980:three_prime_UTR 40.0%
GACAAGAGGAGATTGGAAAA+TGG + chr1_1:34909755-34909774 Msa0019980:three_prime_UTR 40.0%
AAGGGAACGAGAGAAAGAAG+AGG + chr1_1:34903530-34903549 Msa0019980:five_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG + chr1_1:34903531-34903550 Msa0019980:five_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG + chr1_1:34903539-34903558 Msa0019980:five_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG + chr1_1:34903540-34903559 Msa0019980:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - chr1_1:34903756-34903775 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - chr1_1:34903757-34903776 None:intergenic 45.0%
! TTGATCTGAATGGTGCTGGA+TGG + chr1_1:34904004-34904023 Msa0019980:intron 45.0%
!! CCAAAGAGTACTGATAACCC+CGG - chr1_1:34904387-34904406 None:intergenic 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + chr1_1:34905288-34905307 Msa0019980:intron 45.0%
AAGCATACACTCCCAATGAC+TGG + chr1_1:34905674-34905693 Msa0019980:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + chr1_1:34905684-34905703 Msa0019980:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + chr1_1:34905876-34905895 Msa0019980:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + chr1_1:34905878-34905897 Msa0019980:intron 45.0%
! ATTTGTGGTGGAGGAGTTTC+TGG + chr1_1:34906350-34906369 Msa0019980:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + chr1_1:34906925-34906944 Msa0019980:intron 45.0%
CCTTATCATTTCAATCCGGG+CGG - chr1_1:34906943-34906962 None:intergenic 45.0%
! GTGTAAAGCTCTAATGCCAG+GGG + chr1_1:34907229-34907248 Msa0019980:CDS 45.0%
ATCATGTGTATGCAACCCCT+TGG + chr1_1:34907638-34907657 Msa0019980:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - chr1_1:34908047-34908066 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + chr1_1:34908386-34908405 Msa0019980:CDS 45.0%
CTGCATTCTTGCATATCAGG+AGG + chr1_1:34908570-34908589 Msa0019980:CDS 45.0%
GCTAAAGGCAGTGTTCCAAT+TGG + chr1_1:34908839-34908858 Msa0019980:CDS 45.0%
GGCAGTGTTCCAATTGGTAT+TGG + chr1_1:34908845-34908864 Msa0019980:CDS 45.0%
GAACAGAGGGAGTAGATGAT+GGG - chr1_1:34909027-34909046 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + chr1_1:34909035-34909054 Msa0019980:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - chr1_1:34909206-34909225 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - chr1_1:34909326-34909345 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG + chr1_1:34909536-34909555 Msa0019980:CDS 45.0%
CTTATCCAAGTCGACATCGT+TGG - chr1_1:34909590-34909609 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG + chr1_1:34909588-34909607 Msa0019980:CDS 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + chr1_1:34909713-34909732 Msa0019980:intron 45.0%
GCATGCCGCTGAATAATTAG+TGG - chr1_1:34909946-34909965 None:intergenic 45.0%
CCTCACACTTTCTTCAGATG+AGG - chr1_1:34910031-34910050 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG + chr1_1:34910028-34910047 Msa0019980:three_prime_UTR 45.0%
AGAGAAACGGGAGAGGAAGA+AGG + chr1_1:34903434-34903453 Msa0019980:five_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG + chr1_1:34903435-34903454 Msa0019980:five_prime_UTR 50.0%
AACGAAGGGACCGAGAGAAA+CGG + chr1_1:34903554-34903573 Msa0019980:five_prime_UTR 50.0%
AGAGAGAACGGAAGAGGAGA+GGG + chr1_1:34903602-34903621 Msa0019980:five_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG - chr1_1:34903660-34903679 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG - chr1_1:34903664-34903683 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG - chr1_1:34903751-34903770 None:intergenic 50.0%
ATGGGGGTTGGGTTTGCAAT+TGG + chr1_1:34903852-34903871 Msa0019980:five_prime_UTR 50.0%
CCGGGGTTATCAGTACTCTT+TGG + chr1_1:34904384-34904403 Msa0019980:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG + chr1_1:34904401-34904420 Msa0019980:CDS 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - chr1_1:34905891-34905910 None:intergenic 50.0%
CCGCCCGGATTGAAATGATA+AGG + chr1_1:34906940-34906959 Msa0019980:intron 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + chr1_1:34907000-34907019 Msa0019980:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + chr1_1:34907001-34907020 Msa0019980:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - chr1_1:34907177-34907196 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + chr1_1:34907177-34907196 Msa0019980:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - chr1_1:34907185-34907204 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG - chr1_1:34907186-34907205 None:intergenic 50.0%
CTCATGCTTTCTTCATCCCC+TGG - chr1_1:34907248-34907267 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG + chr1_1:34907796-34907815 Msa0019980:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + chr1_1:34908044-34908063 Msa0019980:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - chr1_1:34908359-34908378 None:intergenic 50.0%
CGGGGAAGGATGTGTGATTA+AGG + chr1_1:34908400-34908419 Msa0019980:CDS 50.0%
GGGCTGCATTCTTGCATATC+AGG + chr1_1:34908567-34908586 Msa0019980:CDS 50.0%
GATGGGCGCAGATTATTACG+AGG + chr1_1:34908617-34908636 Msa0019980:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG - chr1_1:34909028-34909047 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG - chr1_1:34909115-34909134 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + chr1_1:34909582-34909601 Msa0019980:CDS 50.0%
! CAAATTGCATGTGGGGGTGT+AGG + chr1_1:34909875-34909894 Msa0019980:three_prime_UTR 50.0%
AAACGGGAGAGGAAGAAGGG+TGG + chr1_1:34903438-34903457 Msa0019980:five_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+GGG + chr1_1:34903555-34903574 Msa0019980:five_prime_UTR 55.0%
TCTCCCGTTCCCGTTTCTCT+CGG - chr1_1:34903567-34903586 None:intergenic 55.0%
AGAAGGGCGACGAGAGAGAA+CGG + chr1_1:34903590-34903609 Msa0019980:five_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG + chr1_1:34903601-34903620 Msa0019980:five_prime_UTR 55.0%
GGGGTTGGGTTTGCAATTGG+AGG + chr1_1:34903855-34903874 Msa0019980:five_prime_UTR 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + chr1_1:34904871-34904890 Msa0019980:CDS 55.0%
!! TGGTGGAGGAGTTTCTGGCA+TGG + chr1_1:34906355-34906374 Msa0019980:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + chr1_1:34907011-34907030 Msa0019980:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG - chr1_1:34907173-34907192 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - chr1_1:34907178-34907197 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - chr1_1:34907181-34907200 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + chr1_1:34907178-34907197 Msa0019980:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG - chr1_1:34907182-34907201 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG + chr1_1:34907787-34907806 Msa0019980:intron 55.0%
AATGCAGCCCGACCACTGAA+TGG - chr1_1:34908557-34908576 None:intergenic 55.0%
GGGACCGAGAGAAACGGGAA+CGG + chr1_1:34903560-34903579 Msa0019980:five_prime_UTR 60.0%
GGACCGAGAGAAACGGGAAC+GGG + chr1_1:34903561-34903580 Msa0019980:five_prime_UTR 60.0%
GAGAGAAACGGGAACGGGAG+AGG + chr1_1:34903566-34903585 Msa0019980:five_prime_UTR 60.0%
ACGGGAACGGGAGAGGAAGA+AGG + chr1_1:34903573-34903592 Msa0019980:five_prime_UTR 60.0%
CGGGAACGGGAGAGGAAGAA+GGG + chr1_1:34903574-34903593 Msa0019980:five_prime_UTR 60.0%
GCGACGAGAGAGAACGGAAG+AGG + chr1_1:34903596-34903615 Msa0019980:five_prime_UTR 60.0%
GTGTTGGACGGCGAAGTCGA+CGG - chr1_1:34903648-34903667 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG - chr1_1:34907169-34907188 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG - chr1_1:34907174-34907193 None:intergenic 60.0%
TTGGACGGCGAAGTCGACGG+CGG - chr1_1:34903645-34903664 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG - chr1_1:34907168-34907187 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG - chr1_1:34907170-34907189 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 34903429 34910204 34903429 ID=Msa0019980;Name=Msa0019980
chr1_1 mRNA 34903429 34910204 34903429 ID=Msa0019980-mRNA-1;Parent=Msa0019980;Name=Msa0019980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=402|0.83|0.84|1|0.83|0.76|13|478|270
chr1_1 exon 34903429 34903705 34903429 ID=Msa0019980-mRNA-1:exon:11070;Parent=Msa0019980-mRNA-1
chr1_1 exon 34903794 34903898 34903794 ID=Msa0019980-mRNA-1:exon:11071;Parent=Msa0019980-mRNA-1
chr1_1 exon 34904204 34904244 34904204 ID=Msa0019980-mRNA-1:exon:11072;Parent=Msa0019980-mRNA-1
chr1_1 exon 34904397 34904422 34904397 ID=Msa0019980-mRNA-1:exon:11073;Parent=Msa0019980-mRNA-1
chr1_1 exon 34904532 34904619 34904532 ID=Msa0019980-mRNA-1:exon:11074;Parent=Msa0019980-mRNA-1
chr1_1 exon 34904755 34904892 34904755 ID=Msa0019980-mRNA-1:exon:11075;Parent=Msa0019980-mRNA-1
chr1_1 exon 34905598 34905626 34905598 ID=Msa0019980-mRNA-1:exon:11076;Parent=Msa0019980-mRNA-1
chr1_1 exon 34907226 34907295 34907226 ID=Msa0019980-mRNA-1:exon:11077;Parent=Msa0019980-mRNA-1
chr1_1 exon 34908338 34908421 34908338 ID=Msa0019980-mRNA-1:exon:11078;Parent=Msa0019980-mRNA-1
chr1_1 exon 34908540 34908638 34908540 ID=Msa0019980-mRNA-1:exon:11079;Parent=Msa0019980-mRNA-1
chr1_1 exon 34908812 34908931 34908812 ID=Msa0019980-mRNA-1:exon:11080;Parent=Msa0019980-mRNA-1
chr1_1 exon 34909485 34909609 34909485 ID=Msa0019980-mRNA-1:exon:11081;Parent=Msa0019980-mRNA-1
chr1_1 exon 34909714 34910204 34909714 ID=Msa0019980-mRNA-1:exon:11082;Parent=Msa0019980-mRNA-1
chr1_1 five_prime_UTR 34903429 34903705 34903429 ID=Msa0019980-mRNA-1:five_prime_utr;Parent=Msa0019980-mRNA-1
chr1_1 five_prime_UTR 34903794 34903898 34903794 ID=Msa0019980-mRNA-1:five_prime_utr;Parent=Msa0019980-mRNA-1
chr1_1 five_prime_UTR 34904204 34904223 34904204 ID=Msa0019980-mRNA-1:five_prime_utr;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34904224 34904244 34904224 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34904397 34904422 34904397 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34904532 34904619 34904532 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34904755 34904892 34904755 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34905598 34905626 34905598 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34907226 34907295 34907226 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34908338 34908421 34908338 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34908540 34908638 34908540 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34908812 34908931 34908812 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34909485 34909609 34909485 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 CDS 34909714 34909726 34909714 ID=Msa0019980-mRNA-1:cds;Parent=Msa0019980-mRNA-1
chr1_1 three_prime_UTR 34909727 34910204 34909727 ID=Msa0019980-mRNA-1:three_prime_utr;Parent=Msa0019980-mRNA-1
Gene Sequence

>Msa0019980

ATGATAATTTCATCCCATAAGTACTCTTTGGTTCATGCAGCTGCTTGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCTGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGAAAAATCAACTAGATAAGTCTTTGATGAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCGTACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTCGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCAGATTATTACGAGACAGAAGCTGATAAAAGTTTTTTAGCTGCTAAAGGCAGTGTTCCAATTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAGAAGCATTCCCAACGATGTCGACTTGGATAAGGATGGTCGAGTAA
Protein sequence

>Msa0019980

MIISSHKYSLVHAAACAYDRAAIKFRGVEADINFNIEDYEEDLKLVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMKNQLDKSLMRMCKALMPGDEESMSDEAIWETLRTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGADYYETEADKSFLAAKGSVPIGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTEAFPTMSTWIRMVE*