AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276470 MtrunA17_Chr5g0447341 62.136 103 6 1 127 196 375 477 1.23e-29 115
Msa0276470 MtrunA17_Chr3g0120471 55.446 101 15 1 126 196 373 473 3.31e-25 103
Msa0276470 MtrunA17_Chr4g0033371 94.118 34 2 0 197 230 421 454 4.25e-15 73.9
Msa0276470 MtrunA17_Chr5g0441571 46.591 88 46 1 19 106 144 230 7.22e-14 70.5
Msa0276470 MtrunA17_Chr5g0441651 43.750 96 51 2 13 106 144 238 1.29e-12 66.6
Msa0276470 MtrunA17_Chr6g0454161 60.784 51 20 0 142 192 125 175 6.16e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276470 AT5G48300.1 53.333 105 16 1 125 196 378 482 9.18e-26 105

Find 84 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 2_3:+8756781 Msa0276470:three_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 2_3:+8750258 Msa0276470:five_prime_UTR
AATTAAGCTTTCTTTGAATA+AGG 0.238635 2_3:-8750403 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 2_3:+8750413 Msa0276470:CDS
GATGAACTCTTCACATTTGA+TGG 0.274227 2_3:-8756123 None:intergenic
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 2_3:+8756619 Msa0276470:three_prime_UTR
CGGGGAAGGATGTGTGATTA+AGG 0.317043 2_3:+8755013 Msa0276470:CDS
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 2_3:-8750253 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 2_3:+8750454 Msa0276470:CDS
GACAAGAGGAGATTGGAAAA+TGG 0.375067 2_3:+8756371 Msa0276470:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 2_3:+8750084 Msa0276470:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 2_3:+8754993 Msa0276470:CDS
CGTCTATGTTTCTTAATCTC+AGG 0.392267 2_3:+8751336 Msa0276470:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 2_3:+8755511 Msa0276470:CDS
GGCAGTGTTCCAATTGGTAT+TGG 0.426491 2_3:+8755460 Msa0276470:CDS
ACGAAGGGACCGAGAGAAAC+GGG 0.430431 2_3:+8750127 Msa0276470:five_prime_UTR
CTCATGCTTTCTTCATCCCC+TGG 0.434251 2_3:-8753860 None:intergenic
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 2_3:+8750083 Msa0276470:five_prime_UTR
AAATTGCATGTCGTTAGAAA+AGG 0.441642 2_3:+8750058 Msa0276470:five_prime_UTR
ACGGGAACGGGAGAGGAAGA+AGG 0.442996 2_3:+8750145 Msa0276470:five_prime_UTR
AACGAAGGGACCGAGAGAAA+CGG 0.452796 2_3:+8750126 Msa0276470:five_prime_UTR
GGGGTTGGGTTTGCAATTGG+AGG 0.457079 2_3:+8750435 Msa0276470:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 2_3:-8756202 None:intergenic
AAGGGCGACGAGAGAGAGAA+AGG 0.457568 2_3:+8750164 Msa0276470:five_prime_UTR
TGATGAAGACAAGAGGAGAT+TGG 0.460581 2_3:+8756364 Msa0276470:three_prime_UTR
CTGAATTTCAAATTGCATGT+GGG 0.467504 2_3:+8756490 Msa0276470:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 2_3:+8756204 Msa0276470:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 2_3:+8754994 Msa0276470:CDS
TCTCCCGTTCCCGTTTCTCT+CGG 0.471343 2_3:-8750136 None:intergenic
GAAAGCTTAATTGAAAGTAT+GGG 0.474338 2_3:+8750414 Msa0276470:CDS
GGACCGAGAGAAACGGGAAC+GGG 0.475016 2_3:+8750133 Msa0276470:five_prime_UTR
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 2_3:+8750006 Msa0276470:five_prime_UTR
GAGAGAAACGGGAACGGGAG+AGG 0.478946 2_3:+8750138 Msa0276470:five_prime_UTR
ATGTGTAAAGCTCTAATGCC+AGG 0.481314 2_3:+8753842 Msa0276470:CDS
GAGTTTCTGCCAATACCAAT+TGG 0.481399 2_3:-8755469 None:intergenic
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 2_3:+8751432 Msa0276470:CDS
GAAGAAACAAGAAGAATTGG+AGG 0.484939 2_3:+8750457 Msa0276470:CDS
CGGGAACGGGAGAGGAAGAA+GGG 0.495297 2_3:+8750146 Msa0276470:five_prime_UTR
TTGGTGCCTTAGCGATGGTA+AGG 0.495404 2_3:+8751451 Msa0276470:CDS
AGTGTTCACATGAGAAGGCT+TGG 0.497606 2_3:+8756152 Msa0276470:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 2_3:+8749999 None:intergenic
TTATGAAGAGGATTTGAAGC+TGG 0.505390 2_3:+8751173 Msa0276470:CDS
CATTCCCAACGATGTCGACT+TGG 0.506190 2_3:+8756198 Msa0276470:CDS
GCATGCTGCTGAATAATTAG+TGG 0.510173 2_3:-8756566 None:intergenic
GACGAGAGAGAGAAAGGAAG+AGG 0.518785 2_3:+8750170 Msa0276470:five_prime_UTR
AGAGAGAAAGGAAGAGGAGA+GGG 0.521969 2_3:+8750176 Msa0276470:five_prime_UTR
GCTAAAGGCAGTGTTCCAAT+TGG 0.523154 2_3:+8755454 Msa0276470:CDS
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 2_3:+8750102 Msa0276470:five_prime_UTR
AAAGCTTAATTGAAAGTATG+GGG 0.524628 2_3:+8750415 Msa0276470:CDS
CTTATCCAAGTCGACATCGT+TGG 0.524700 2_3:-8756203 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 2_3:+8750059 Msa0276470:five_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 2_3:+8750007 Msa0276470:five_prime_UTR
GCATGAGTGATGAAGCATAT+GGG 0.534374 2_3:+8753876 Msa0276470:CDS
CAATGAGTGTTCACATGAGA+AGG 0.534579 2_3:+8756147 Msa0276470:CDS
ACTGAATTTCAAATTGCATG+TGG 0.539019 2_3:+8756489 Msa0276470:three_prime_UTR
AGCATGAGTGATGAAGCATA+TGG 0.542959 2_3:+8753875 Msa0276470:CDS
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 2_3:-8750235 None:intergenic
CAACATTGAAGATTATGAAG+AGG 0.549840 2_3:+8751161 Msa0276470:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 2_3:-8756521 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 2_3:-8750219 None:intergenic
GAGAGAGAAAGGAAGAGGAG+AGG 0.560715 2_3:+8750175 Msa0276470:five_prime_UTR
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 2_3:+8751446 Msa0276470:CDS
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 2_3:+8750111 Msa0276470:five_prime_UTR
CCTCACACTTTCTTCAGATG+AGG 0.567909 2_3:-8756651 None:intergenic
GGGACCGAGAGAAACGGGAA+CGG 0.573245 2_3:+8750132 Msa0276470:five_prime_UTR
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 2_3:+8750112 Msa0276470:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 2_3:+8754999 Msa0276470:CDS
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 2_3:+8751125 Msa0276470:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 2_3:+8750010 Msa0276470:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 2_3:+8751117 Msa0276470:CDS
TGTGTAAAGCTCTAATGCCA+GGG 0.600360 2_3:+8753843 Msa0276470:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 2_3:-8754969 None:intergenic
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 2_3:+8750103 Msa0276470:five_prime_UTR
AAGCTTAATTGAAAGTATGG+GGG 0.620557 2_3:+8750416 Msa0276470:CDS
GATCAGAGTGTTGGACGGCG+AGG 0.636768 2_3:-8750226 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 2_3:+8756357 Msa0276470:three_prime_UTR
TGAATTTCAAATTGCATGTG+GGG 0.642872 2_3:+8756491 Msa0276470:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 2_3:+8755525 Msa0276470:CDS
TTGGACGGCGAGGTCGACGG+CGG 0.673722 2_3:-8750216 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 2_3:+8754995 Msa0276470:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 2_3:-8750231 None:intergenic
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 2_3:+8756651 Msa0276470:three_prime_UTR
GTGTAAAGCTCTAATGCCAG+GGG 0.691914 2_3:+8753844 Msa0276470:CDS
GAATTTCAAATTGCATGTGG+GGG 0.716284 2_3:+8756492 Msa0276470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + chr2_3:8751807-8751826 Msa0276470:intron 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG + chr2_3:8753023-8753042 Msa0276470:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + chr2_3:8753954-8753973 Msa0276470:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - chr2_3:8755979-8755998 None:intergenic 10.0%
!! AAATTGAATGTAAAAATTGT+AGG + chr2_3:8750845-8750864 Msa0276470:intron 15.0%
!! AATTGAATGTAAAAATTGTA+GGG + chr2_3:8750846-8750865 Msa0276470:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - chr2_3:8750938-8750957 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG + chr2_3:8750939-8750958 Msa0276470:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + chr2_3:8751026-8751045 Msa0276470:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG - chr2_3:8751250-8751269 None:intergenic 15.0%
!!! GTATTGATTTATTTATTTCT+GGG + chr2_3:8752358-8752377 Msa0276470:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG + chr2_3:8753032-8753051 Msa0276470:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG + chr2_3:8753447-8753466 Msa0276470:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG + chr2_3:8756058-8756077 Msa0276470:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + chr2_3:8756308-8756327 Msa0276470:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG + chr2_3:8756781-8756800 Msa0276470:three_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG - chr2_3:8750353-8750372 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG + chr2_3:8750353-8750372 Msa0276470:intron 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG - chr2_3:8750406-8750425 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG + chr2_3:8750884-8750903 Msa0276470:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG + chr2_3:8750940-8750959 Msa0276470:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - chr2_3:8751274-8751293 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + chr2_3:8751656-8751675 Msa0276470:intron 20.0%
!! TAAAAAACTTACACTTTAGT+AGG - chr2_3:8751950-8751969 None:intergenic 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - chr2_3:8751989-8752008 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - chr2_3:8752153-8752172 None:intergenic 20.0%
!!! GGTATTGATTTATTTATTTC+TGG + chr2_3:8752357-8752376 Msa0276470:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG + chr2_3:8752543-8752562 Msa0276470:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + chr2_3:8752633-8752652 Msa0276470:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG + chr2_3:8752723-8752742 Msa0276470:intron 20.0%
!!! TGCTTTCTATTGATAATTTT+TGG + chr2_3:8752943-8752962 Msa0276470:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG + chr2_3:8752950-8752969 Msa0276470:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + chr2_3:8753003-8753022 Msa0276470:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG - chr2_3:8753224-8753243 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG + chr2_3:8753528-8753547 Msa0276470:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - chr2_3:8754346-8754365 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - chr2_3:8754373-8754392 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + chr2_3:8754726-8754745 Msa0276470:intron 20.0%
!! AGATGTCAAATATGATTAAA+TGG + chr2_3:8755091-8755110 Msa0276470:intron 20.0%
!!! AAAAGCTGATAAAAGTTTTT+TGG + chr2_3:8755429-8755448 Msa0276470:CDS 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - chr2_3:8755584-8755603 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - chr2_3:8755969-8755988 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + chr2_3:8756312-8756331 Msa0276470:intron 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG - chr2_3:8750256-8750275 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG + chr2_3:8750258-8750277 Msa0276470:five_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG - chr2_3:8750352-8750371 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG - chr2_3:8750354-8750373 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG + chr2_3:8750352-8750371 Msa0276470:intron 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG + chr2_3:8750413-8750432 Msa0276470:CDS 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG + chr2_3:8750414-8750433 Msa0276470:CDS 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG + chr2_3:8750415-8750434 Msa0276470:CDS 25.0%
! TGTAAATCATTTCTGTTTGA+TGG + chr2_3:8750498-8750517 Msa0276470:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG + chr2_3:8750547-8750566 Msa0276470:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG - chr2_3:8750634-8750653 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG + chr2_3:8750633-8750652 Msa0276470:intron 25.0%
!! TTTTACCAAATCAGATACAA+AGG - chr2_3:8750641-8750660 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG - chr2_3:8750669-8750688 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG + chr2_3:8750798-8750817 Msa0276470:intron 25.0%
! TTACATAGAACATACCTTAT+GGG - chr2_3:8750815-8750834 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - chr2_3:8750816-8750835 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + chr2_3:8750907-8750926 Msa0276470:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG + chr2_3:8750941-8750960 Msa0276470:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + chr2_3:8751292-8751311 Msa0276470:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + chr2_3:8751886-8751905 Msa0276470:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG - chr2_3:8751894-8751913 None:intergenic 25.0%
!!! AAGTTTTTTAACACTGTCAT+AGG + chr2_3:8751960-8751979 Msa0276470:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - chr2_3:8752209-8752228 None:intergenic 25.0%
!! GTTATTGAAAGTTTTGCAAA+TGG + chr2_3:8752336-8752355 Msa0276470:intron 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG + chr2_3:8752363-8752382 Msa0276470:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + chr2_3:8752641-8752660 Msa0276470:intron 25.0%
! CTAAAAACATACACAATCTA+AGG - chr2_3:8752894-8752913 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG + chr2_3:8753234-8753253 Msa0276470:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - chr2_3:8753402-8753421 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + chr2_3:8753412-8753431 Msa0276470:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + chr2_3:8753418-8753437 Msa0276470:intron 25.0%
!!! AGTCGATTCAAAATTTTGTT+TGG + chr2_3:8754009-8754028 Msa0276470:intron 25.0%
! ACATAAAGAACAAAAAGTGA+TGG + chr2_3:8754380-8754399 Msa0276470:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG + chr2_3:8754557-8754576 Msa0276470:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG - chr2_3:8754574-8754593 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + chr2_3:8754864-8754883 Msa0276470:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + chr2_3:8754887-8754906 Msa0276470:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + chr2_3:8754888-8754907 Msa0276470:intron 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - chr2_3:8755585-8755604 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + chr2_3:8755611-8755630 Msa0276470:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - chr2_3:8755665-8755684 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - chr2_3:8755790-8755809 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG - chr2_3:8756003-8756022 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + chr2_3:8756338-8756357 Msa0276470:exon 25.0%
AAATTGCATGTCGTTAGAAA+AGG + chr2_3:8750058-8750077 Msa0276470:five_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG + chr2_3:8750059-8750078 Msa0276470:five_prime_UTR 30.0%
ATTGAAATTGGGGTTGAAAA+GGG - chr2_3:8750342-8750361 None:intergenic 30.0%
AATTGAAATTGGGGTTGAAA+AGG - chr2_3:8750343-8750362 None:intergenic 30.0%
! AAGCTTAATTGAAAGTATGG+GGG + chr2_3:8750416-8750435 Msa0276470:CDS 30.0%
GTCTGTTTAAGAAGATACAT+AGG + chr2_3:8750546-8750565 Msa0276470:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG + chr2_3:8750572-8750591 Msa0276470:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG + chr2_3:8750942-8750961 Msa0276470:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + chr2_3:8751161-8751180 Msa0276470:CDS 30.0%
TGTGATTTAAATGAGTTTGG+AGG + chr2_3:8751295-8751314 Msa0276470:intron 30.0%
AGTTTGGAGGAATTAATTTC+AGG + chr2_3:8751308-8751327 Msa0276470:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + chr2_3:8751362-8751381 Msa0276470:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG + chr2_3:8751372-8751391 Msa0276470:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG + chr2_3:8751383-8751402 Msa0276470:CDS 30.0%
!! GCTTTGTTTATTATGCATTC+AGG + chr2_3:8751845-8751864 Msa0276470:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + chr2_3:8752084-8752103 Msa0276470:intron 30.0%
AACTAGATAAGTCTTTGATG+TGG + chr2_3:8752219-8752238 Msa0276470:intron 30.0%
TAAGTCTTTGATGTGGTATT+TGG + chr2_3:8752226-8752245 Msa0276470:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + chr2_3:8752309-8752328 Msa0276470:intron 30.0%
AACCATCATACACATAAGAA+AGG - chr2_3:8752405-8752424 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG + chr2_3:8752411-8752430 Msa0276470:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - chr2_3:8752580-8752599 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + chr2_3:8752653-8752672 Msa0276470:intron 30.0%
! TTCAACTGAGTTTTCGAATT+TGG + chr2_3:8752709-8752728 Msa0276470:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + chr2_3:8752905-8752924 Msa0276470:intron 30.0%
! TCAATAGAAAGCATGAACAA+AGG - chr2_3:8752936-8752955 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG + chr2_3:8752953-8752972 Msa0276470:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + chr2_3:8753052-8753071 Msa0276470:intron 30.0%
TACAAACCAATTGATAGAGA+AGG + chr2_3:8753083-8753102 Msa0276470:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG - chr2_3:8753092-8753111 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG + chr2_3:8753093-8753112 Msa0276470:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG + chr2_3:8753120-8753139 Msa0276470:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG + chr2_3:8753155-8753174 Msa0276470:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG - chr2_3:8753162-8753181 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG + chr2_3:8753205-8753224 Msa0276470:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG + chr2_3:8753324-8753343 Msa0276470:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG + chr2_3:8753369-8753388 Msa0276470:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG + chr2_3:8753505-8753524 Msa0276470:intron 30.0%
AATCCTTATCATTTCAATCC+GGG - chr2_3:8753561-8753580 None:intergenic 30.0%
CAATCCTTATCATTTCAATC+CGG - chr2_3:8753562-8753581 None:intergenic 30.0%
! TCATAAACACATTTTACCCA+AGG - chr2_3:8753733-8753752 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + chr2_3:8754055-8754074 Msa0276470:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - chr2_3:8754339-8754358 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + chr2_3:8754444-8754463 Msa0276470:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - chr2_3:8754499-8754518 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG - chr2_3:8754527-8754546 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG - chr2_3:8754528-8754547 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG + chr2_3:8754993-8755012 Msa0276470:CDS 30.0%
! ATATCACTGATAGTGTTATC+GGG + chr2_3:8754994-8755013 Msa0276470:CDS 30.0%
TATTGAAGACACTTTGTTGA+TGG + chr2_3:8755214-8755233 Msa0276470:intron 30.0%
ATTGAAGACACTTTGTTGAT+GGG + chr2_3:8755215-8755234 Msa0276470:intron 30.0%
AGAAAATCAATGTTGCAGTT+AGG - chr2_3:8755398-8755417 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG + chr2_3:8755439-8755458 Msa0276470:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG - chr2_3:8755494-8755513 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG - chr2_3:8755495-8755514 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG + chr2_3:8755525-8755544 Msa0276470:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - chr2_3:8755563-8755582 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG - chr2_3:8755603-8755622 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + chr2_3:8755793-8755812 Msa0276470:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG + chr2_3:8755860-8755879 Msa0276470:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - chr2_3:8755924-8755943 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG + chr2_3:8755926-8755945 Msa0276470:intron 30.0%
! GGTTATTAATTGATGACAAC+AGG + chr2_3:8756079-8756098 Msa0276470:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG + chr2_3:8756489-8756508 Msa0276470:three_prime_UTR 30.0%
CTGAATTTCAAATTGCATGT+GGG + chr2_3:8756490-8756509 Msa0276470:three_prime_UTR 30.0%
TGAATTTCAAATTGCATGTG+GGG + chr2_3:8756491-8756510 Msa0276470:three_prime_UTR 30.0%
TATGATATGTACTCAGAACT+TGG - chr2_3:8756524-8756543 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG + chr2_3:8756628-8756647 Msa0276470:three_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG + chr2_3:8750084-8750103 Msa0276470:five_prime_UTR 35.0%
! TTAATTGAAAGTATGGGGGT+TGG + chr2_3:8750420-8750439 Msa0276470:CDS 35.0%
! TAATTGAAAGTATGGGGGTT+GGG + chr2_3:8750421-8750440 Msa0276470:CDS 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + chr2_3:8750454-8750473 Msa0276470:CDS 35.0%
GAAGAAACAAGAAGAATTGG+AGG + chr2_3:8750457-8750476 Msa0276470:CDS 35.0%
TAAGAAGATACATAGGGACA+TGG + chr2_3:8750553-8750572 Msa0276470:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + chr2_3:8751125-8751144 Msa0276470:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+TGG + chr2_3:8751173-8751192 Msa0276470:CDS 35.0%
! ATTTGAAGCTGGTGAGTTAT+GGG + chr2_3:8751184-8751203 Msa0276470:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + chr2_3:8751336-8751355 Msa0276470:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG - chr2_3:8751460-8751479 None:intergenic 35.0%
!! TAGTTCTGATTATTGCGATC+TGG + chr2_3:8751536-8751555 Msa0276470:intron 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + chr2_3:8751739-8751758 Msa0276470:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + chr2_3:8751755-8751774 Msa0276470:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - chr2_3:8751942-8751961 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG + chr2_3:8752400-8752419 Msa0276470:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG + chr2_3:8752437-8752456 Msa0276470:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + chr2_3:8752784-8752803 Msa0276470:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + chr2_3:8752866-8752885 Msa0276470:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG + chr2_3:8752956-8752975 Msa0276470:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG + chr2_3:8753099-8753118 Msa0276470:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG + chr2_3:8753102-8753121 Msa0276470:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG + chr2_3:8753240-8753259 Msa0276470:intron 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + chr2_3:8753680-8753699 Msa0276470:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - chr2_3:8753728-8753747 None:intergenic 35.0%
!!! TCTGTTTGTTGTAGCACTTT+TGG + chr2_3:8754131-8754150 Msa0276470:intron 35.0%
!!! CTGTTTGTTGTAGCACTTTT+GGG + chr2_3:8754132-8754151 Msa0276470:intron 35.0%
AACGAAGAACAACATAGAGA+TGG - chr2_3:8754161-8754180 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG - chr2_3:8754191-8754210 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + chr2_3:8754190-8754209 Msa0276470:intron 35.0%
ACATAGTAGCAAAACTCCAA+GGG - chr2_3:8754266-8754285 None:intergenic 35.0%
AACATAGTAGCAAAACTCCA+AGG - chr2_3:8754267-8754286 None:intergenic 35.0%
AAGAACAAAAAGTGATGGTC+AGG + chr2_3:8754385-8754404 Msa0276470:intron 35.0%
! TTAGCTTTCATGTGAGTAGT+TGG - chr2_3:8754592-8754611 None:intergenic 35.0%
CTCACATGAAAGCTAACAAT+TGG + chr2_3:8754596-8754615 Msa0276470:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - chr2_3:8754945-8754964 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG + chr2_3:8754995-8755014 Msa0276470:CDS 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - chr2_3:8755151-8755170 None:intergenic 35.0%
! AATCTTCCATTCAGTGGTTT+TGG + chr2_3:8755161-8755180 Msa0276470:intron 35.0%
! ATCTTCCATTCAGTGGTTTT+GGG + chr2_3:8755162-8755181 Msa0276470:intron 35.0%
ATGCAGCTCAATTCATTCAT+TGG + chr2_3:8755347-8755366 Msa0276470:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + chr2_3:8755365-8755384 Msa0276470:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + chr2_3:8755511-8755530 Msa0276470:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + chr2_3:8755716-8755735 Msa0276470:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + chr2_3:8755784-8755803 Msa0276470:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + chr2_3:8755936-8755955 Msa0276470:intron 35.0%
GATGAACTCTTCACATTTGA+TGG - chr2_3:8756126-8756145 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+GGG + chr2_3:8756492-8756511 Msa0276470:three_prime_UTR 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + chr2_3:8756619-8756638 Msa0276470:three_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG + chr2_3:8750083-8750102 Msa0276470:five_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG + chr2_3:8750249-8750268 Msa0276470:five_prime_UTR 40.0%
ATTGGGGTTGAAAAGGGTTA+GGG - chr2_3:8750336-8750355 None:intergenic 40.0%
AATTGGGGTTGAAAAGGGTT+AGG - chr2_3:8750337-8750356 None:intergenic 40.0%
GAATTTGATCTGAATGGTGC+TGG + chr2_3:8750578-8750597 Msa0276470:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + chr2_3:8751117-8751136 Msa0276470:CDS 40.0%
! GATTTGAAGCTGGTGAGTTA+TGG + chr2_3:8751183-8751202 Msa0276470:intron 40.0%
! TTTGAAGCTGGTGAGTTATG+GGG + chr2_3:8751185-8751204 Msa0276470:intron 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + chr2_3:8751432-8751451 Msa0276470:CDS 40.0%
TGATGTTGGCAACTTTGTGA+TGG + chr2_3:8751821-8751840 Msa0276470:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + chr2_3:8751861-8751880 Msa0276470:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + chr2_3:8752104-8752123 Msa0276470:intron 40.0%
ACCATCATAGACCAGTCATT+GGG - chr2_3:8752302-8752321 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG - chr2_3:8752303-8752322 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + chr2_3:8752491-8752510 Msa0276470:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + chr2_3:8753607-8753626 Msa0276470:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + chr2_3:8753608-8753627 Msa0276470:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + chr2_3:8753643-8753662 Msa0276470:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - chr2_3:8753712-8753731 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + chr2_3:8753713-8753732 Msa0276470:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + chr2_3:8753714-8753733 Msa0276470:intron 40.0%
! ATGTGTAAAGCTCTAATGCC+AGG + chr2_3:8753842-8753861 Msa0276470:CDS 40.0%
! TGTGTAAAGCTCTAATGCCA+GGG + chr2_3:8753843-8753862 Msa0276470:CDS 40.0%
AGCATGAGTGATGAAGCATA+TGG + chr2_3:8753875-8753894 Msa0276470:CDS 40.0%
GCATGAGTGATGAAGCATAT+GGG + chr2_3:8753876-8753895 Msa0276470:CDS 40.0%
TATGGGAAACTCTTCGTGTA+AGG + chr2_3:8753893-8753912 Msa0276470:intron 40.0%
! TTGGTGTGTTATTGTCGTCA+AGG + chr2_3:8754028-8754047 Msa0276470:intron 40.0%
TGTTATTGTCGTCAAGGTCT+TGG + chr2_3:8754034-8754053 Msa0276470:intron 40.0%
CATAGTAGCAAAACTCCAAG+GGG - chr2_3:8754265-8754284 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - chr2_3:8754519-8754538 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - chr2_3:8754657-8754676 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG + chr2_3:8755155-8755174 Msa0276470:intron 40.0%
GAGTTTCTGCCAATACCAAT+TGG - chr2_3:8755472-8755491 None:intergenic 40.0%
GAACAGAGAGAGTAGATGAT+GGG - chr2_3:8755643-8755662 None:intergenic 40.0%
CTCTCTCTGTTCCTAATCTT+TGG + chr2_3:8755651-8755670 Msa0276470:intron 40.0%
GCTTTCCTATGAAGGAAATC+AGG - chr2_3:8755934-8755953 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG + chr2_3:8756092-8756111 Msa0276470:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG + chr2_3:8756098-8756117 Msa0276470:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG + chr2_3:8756147-8756166 Msa0276470:CDS 40.0%
TTATCCAAGTCGACATCGTT+GGG - chr2_3:8756205-8756224 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + chr2_3:8756357-8756376 Msa0276470:three_prime_UTR 40.0%
TGATGAAGACAAGAGGAGAT+TGG + chr2_3:8756364-8756383 Msa0276470:three_prime_UTR 40.0%
GACAAGAGGAGATTGGAAAA+TGG + chr2_3:8756371-8756390 Msa0276470:three_prime_UTR 40.0%
GCATGCTGCTGAATAATTAG+TGG - chr2_3:8756569-8756588 None:intergenic 40.0%
AAGGGAACGAGAGAAAGAAG+AGG + chr2_3:8750102-8750121 Msa0276470:five_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG + chr2_3:8750103-8750122 Msa0276470:five_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG + chr2_3:8750111-8750130 Msa0276470:five_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG + chr2_3:8750112-8750131 Msa0276470:five_prime_UTR 45.0%
AGAGAGAAAGGAAGAGGAGA+GGG + chr2_3:8750176-8750195 Msa0276470:five_prime_UTR 45.0%
GGTTGAAAAGGGTTAGGGTT+TGG - chr2_3:8750331-8750350 None:intergenic 45.0%
! TTGATCTGAATGGTGCTGGA+TGG + chr2_3:8750582-8750601 Msa0276470:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + chr2_3:8751860-8751879 Msa0276470:intron 45.0%
AAGCATACACTCCCAATGAC+TGG + chr2_3:8752288-8752307 Msa0276470:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + chr2_3:8752298-8752317 Msa0276470:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + chr2_3:8752490-8752509 Msa0276470:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + chr2_3:8752492-8752511 Msa0276470:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + chr2_3:8753540-8753559 Msa0276470:intron 45.0%
CCTTATCATTTCAATCCGGG+CGG - chr2_3:8753558-8753577 None:intergenic 45.0%
! GTGTAAAGCTCTAATGCCAG+GGG + chr2_3:8753844-8753863 Msa0276470:CDS 45.0%
ATCATGTGTATGCAACCCCT+TGG + chr2_3:8754247-8754266 Msa0276470:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - chr2_3:8754656-8754675 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + chr2_3:8754999-8755018 Msa0276470:CDS 45.0%
CTGCATTCTTGCATATCAGG+AGG + chr2_3:8755185-8755204 Msa0276470:intron 45.0%
GCTAAAGGCAGTGTTCCAAT+TGG + chr2_3:8755454-8755473 Msa0276470:CDS 45.0%
GGCAGTGTTCCAATTGGTAT+TGG + chr2_3:8755460-8755479 Msa0276470:CDS 45.0%
GGAACAGAGAGAGTAGATGA+TGG - chr2_3:8755644-8755663 None:intergenic 45.0%
CACACATGTTGCTGTCATGT+CGG - chr2_3:8755822-8755841 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - chr2_3:8755942-8755961 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG + chr2_3:8756152-8756171 Msa0276470:CDS 45.0%
CTTATCCAAGTCGACATCGT+TGG - chr2_3:8756206-8756225 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG + chr2_3:8756204-8756223 Msa0276470:CDS 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + chr2_3:8756329-8756348 Msa0276470:intron 45.0%
CCTCACACTTTCTTCAGATG+AGG - chr2_3:8756654-8756673 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG + chr2_3:8756651-8756670 Msa0276470:three_prime_UTR 45.0%
!! ATATATATATATATATATCA+AGG + chr2_3:8752060-8752079 Msa0276470:intron 5.0%
AGAGAAACGGGAGAGGAAGA+AGG + chr2_3:8750006-8750025 Msa0276470:five_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG + chr2_3:8750007-8750026 Msa0276470:five_prime_UTR 50.0%
AACGAAGGGACCGAGAGAAA+CGG + chr2_3:8750126-8750145 Msa0276470:five_prime_UTR 50.0%
GACGAGAGAGAGAAAGGAAG+AGG + chr2_3:8750170-8750189 Msa0276470:five_prime_UTR 50.0%
GAGAGAGAAAGGAAGAGGAG+AGG + chr2_3:8750175-8750194 Msa0276470:five_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG - chr2_3:8750234-8750253 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG - chr2_3:8750238-8750257 None:intergenic 50.0%
ATGGGGGTTGGGTTTGCAAT+TGG + chr2_3:8750432-8750451 Msa0276470:CDS 50.0%
CGGGGGTTATCAGTACTCTT+TGG + chr2_3:8750959-8750978 Msa0276470:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG + chr2_3:8750976-8750995 Msa0276470:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG + chr2_3:8751451-8751470 Msa0276470:CDS 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - chr2_3:8752505-8752524 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + chr2_3:8752965-8752984 Msa0276470:intron 50.0%
CCGCCCGGATTGAAATGATA+AGG + chr2_3:8753555-8753574 Msa0276470:intron 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + chr2_3:8753615-8753634 Msa0276470:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + chr2_3:8753616-8753635 Msa0276470:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - chr2_3:8753792-8753811 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + chr2_3:8753792-8753811 Msa0276470:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - chr2_3:8753800-8753819 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG - chr2_3:8753801-8753820 None:intergenic 50.0%
CTCATGCTTTCTTCATCCCC+TGG - chr2_3:8753863-8753882 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG + chr2_3:8754405-8754424 Msa0276470:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + chr2_3:8754653-8754672 Msa0276470:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - chr2_3:8754972-8754991 None:intergenic 50.0%
CGGGGAAGGATGTGTGATTA+AGG + chr2_3:8755013-8755032 Msa0276470:CDS 50.0%
TGCAGCCCAAAACCACTGAA+TGG - chr2_3:8755170-8755189 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG + chr2_3:8755182-8755201 Msa0276470:intron 50.0%
GATGGGCGCAGATTATTACG+AGG + chr2_3:8755232-8755251 Msa0276470:intron 50.0%
TACACTACGATGCCGCAAGA+AGG - chr2_3:8755731-8755750 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + chr2_3:8756198-8756217 Msa0276470:CDS 50.0%
! CAAATTGCATGTGGGGGTGT+AGG + chr2_3:8756498-8756517 Msa0276470:three_prime_UTR 50.0%
AAACGGGAGAGGAAGAAGGG+TGG + chr2_3:8750010-8750029 Msa0276470:five_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+GGG + chr2_3:8750127-8750146 Msa0276470:five_prime_UTR 55.0%
TCTCCCGTTCCCGTTTCTCT+CGG - chr2_3:8750139-8750158 None:intergenic 55.0%
AAGGGCGACGAGAGAGAGAA+AGG + chr2_3:8750164-8750183 Msa0276470:five_prime_UTR 55.0%
GGGGTTGGGTTTGCAATTGG+AGG + chr2_3:8750435-8750454 Msa0276470:CDS 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + chr2_3:8751446-8751465 Msa0276470:CDS 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + chr2_3:8753626-8753645 Msa0276470:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG - chr2_3:8753788-8753807 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - chr2_3:8753793-8753812 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - chr2_3:8753796-8753815 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + chr2_3:8753793-8753812 Msa0276470:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG - chr2_3:8753797-8753816 None:intergenic 55.0%
GTGATGGTCAGGCACAGAGA+AGG + chr2_3:8754396-8754415 Msa0276470:intron 55.0%
GGGACCGAGAGAAACGGGAA+CGG + chr2_3:8750132-8750151 Msa0276470:five_prime_UTR 60.0%
GGACCGAGAGAAACGGGAAC+GGG + chr2_3:8750133-8750152 Msa0276470:five_prime_UTR 60.0%
GAGAGAAACGGGAACGGGAG+AGG + chr2_3:8750138-8750157 Msa0276470:five_prime_UTR 60.0%
ACGGGAACGGGAGAGGAAGA+AGG + chr2_3:8750145-8750164 Msa0276470:five_prime_UTR 60.0%
CGGGAACGGGAGAGGAAGAA+GGG + chr2_3:8750146-8750165 Msa0276470:five_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG - chr2_3:8750229-8750248 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG - chr2_3:8753784-8753803 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG - chr2_3:8753789-8753808 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr2_3:8750222-8750241 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG - chr2_3:8753783-8753802 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG - chr2_3:8753785-8753804 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - chr2_3:8750219-8750238 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8750001 8756827 8750001 ID=Msa0276470;Name=Msa0276470
chr2_3 mRNA 8750001 8756827 8750001 ID=Msa0276470-mRNA-1;Parent=Msa0276470;Name=Msa0276470-mRNA-1;_AED=0.32;_eAED=0.32;_QI=298|0.5|0.77|1|0.5|0.44|9|485|241
chr2_3 exon 8750001 8750279 8750001 ID=Msa0276470-mRNA-1:exon:3951;Parent=Msa0276470-mRNA-1
chr2_3 exon 8750374 8750478 8750374 ID=Msa0276470-mRNA-1:exon:3952;Parent=Msa0276470-mRNA-1
chr2_3 exon 8751107 8751194 8751107 ID=Msa0276470-mRNA-1:exon:3953;Parent=Msa0276470-mRNA-1
chr2_3 exon 8751330 8751472 8751330 ID=Msa0276470-mRNA-1:exon:3954;Parent=Msa0276470-mRNA-1
chr2_3 exon 8753841 8753907 8753841 ID=Msa0276470-mRNA-1:exon:3955;Parent=Msa0276470-mRNA-1
chr2_3 exon 8754951 8755034 8754951 ID=Msa0276470-mRNA-1:exon:3956;Parent=Msa0276470-mRNA-1
chr2_3 exon 8755427 8755546 8755427 ID=Msa0276470-mRNA-1:exon:3957;Parent=Msa0276470-mRNA-1
chr2_3 exon 8756101 8756225 8756101 ID=Msa0276470-mRNA-1:exon:3958;Parent=Msa0276470-mRNA-1
chr2_3 exon 8756330 8756827 8756330 ID=Msa0276470-mRNA-1:exon:3959;Parent=Msa0276470-mRNA-1
chr2_3 five_prime_UTR 8750001 8750279 8750001 ID=Msa0276470-mRNA-1:five_prime_utr;Parent=Msa0276470-mRNA-1
chr2_3 five_prime_UTR 8750374 8750392 8750374 ID=Msa0276470-mRNA-1:five_prime_utr;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8750393 8750478 8750393 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8751107 8751194 8751107 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8751330 8751472 8751330 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8753841 8753907 8753841 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8754951 8755034 8754951 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8755427 8755546 8755427 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8756101 8756225 8756101 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 CDS 8756330 8756342 8756330 ID=Msa0276470-mRNA-1:cds;Parent=Msa0276470-mRNA-1
chr2_3 three_prime_UTR 8756343 8756827 8756343 ID=Msa0276470-mRNA-1:three_prime_utr;Parent=Msa0276470-mRNA-1
Gene Sequence

>Msa0276470

ATGTGTGTCTCCTTATTCAAAGAAAGCTTAATTGAAAGTATGGGGGTTGGGTTTGCAATTGGAGGAAGAAACAAGAAGAATTGGAGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCTGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGGTAAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCATATGGGAAACTCTTCACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGACAAAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCAATTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCATCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAGAAGCATTCCCAACGATGTCGACTTGGATAAGGATGGTCGAGTAA
Protein sequence

>Msa0276470

MCVSLFKESLIESMGVGFAIGGRNKKNWSAYDRAAIKFRGVEADINFNIEDYEEDLKLVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMVRMCKALMPGDEESMSDEAYGKLFTQLRYLPLSKMLDADITDSVIGEGCVIKTKADKSFLAAKGSVPIGIGRNSRIKRAIVDKNARIGENVKADFDGNGTIKCEEFITMSVHMRRLGNDEHLTEAFPTMSTWIRMVE*