Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020970 | sp|Q2QY10|CBP_ORYSJ | 66.544 | 272 | 35 | 5 | 59 | 330 | 77 | 292 | 5.97e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020970 | Msa0020990 | 0.920595 | 1.048311e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020970 | MtrunA17_Chr1g0172721 | 89.091 | 330 | 11 | 1 | 1 | 330 | 1 | 305 | 0.0 | 572 |
| Msa0020970 | MtrunA17_Chr2g0321531 | 43.234 | 303 | 120 | 10 | 39 | 330 | 2 | 263 | 6.70e-59 | 190 |
| Msa0020970 | MtrunA17_Chr2g0333891 | 70.543 | 129 | 13 | 1 | 190 | 318 | 6 | 109 | 9.55e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020970 | AT3G10300.3 | 57.185 | 341 | 96 | 11 | 6 | 330 | 29 | 335 | 9.30e-111 | 325 |
| Msa0020970 | AT5G04170.1 | 58.967 | 329 | 70 | 8 | 6 | 330 | 87 | 354 | 2.39e-106 | 315 |
| Msa0020970 | AT3G10300.2 | 59.794 | 291 | 89 | 11 | 6 | 277 | 29 | 310 | 4.50e-96 | 288 |
| Msa0020970 | AT3G10300.4 | 61.372 | 277 | 82 | 10 | 6 | 266 | 29 | 296 | 6.28e-96 | 288 |
| Msa0020970 | AT3G10300.6 | 57.096 | 303 | 97 | 11 | 6 | 292 | 29 | 314 | 1.82e-95 | 288 |
| Msa0020970 | AT3G10300.5 | 59.589 | 292 | 89 | 12 | 6 | 277 | 29 | 311 | 2.02e-94 | 283 |
| Msa0020970 | AT2G27480.1 | 39.801 | 201 | 93 | 3 | 131 | 328 | 49 | 224 | 1.66e-41 | 144 |
| Msa0020970 | AT3G10300.1 | 50.746 | 201 | 53 | 7 | 27 | 191 | 31 | 221 | 2.45e-40 | 141 |
| Msa0020970 | AT2G27480.2 | 42.029 | 138 | 77 | 2 | 131 | 265 | 49 | 186 | 1.75e-29 | 112 |
Find 137 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTTCCTTTGGTGGTTTC+TGG | 0.083164 | 1_1:+37007912 | None:intergenic |
| TGCTGTTTCTCCTGTGGTAT+TGG | 0.230257 | 1_1:-37004930 | Msa0020970:CDS |
| GGAGGGTTGGCCGTAGGAGG+TGG | 0.257632 | 1_1:+37007955 | None:intergenic |
| TTATATAATTATAAAGGATT+TGG | 0.280093 | 1_1:-37004794 | Msa0020970:CDS |
| TATGACAATTTCATCGAGTA+TGG | 0.281693 | 1_1:-37004854 | Msa0020970:CDS |
| CCGTAACTGGGAGGTTGATT+TGG | 0.288039 | 1_1:+37008187 | None:intergenic |
| AAGCATAGTTGCATGCTTTC+AGG | 0.288562 | 1_1:-37007789 | Msa0020970:CDS |
| GCCGTAGCCGTAACCGTAAC+TGG | 0.323233 | 1_1:+37008174 | None:intergenic |
| GCGCCGTAGGGTTGGGATGG+TGG | 0.324780 | 1_1:+37008040 | None:intergenic |
| TCCTTTGGTGGTTTCTGGTA+AGG | 0.326406 | 1_1:+37007917 | None:intergenic |
| GCGAGATGCGCTGTTGAGTT+TGG | 0.343668 | 1_1:-37004957 | Msa0020970:CDS |
| GGGTTGGCCGTAGGAGGTGG+GGG | 0.354323 | 1_1:+37007958 | None:intergenic |
| CGTAACTGGGAGGTTGATTT+GGG | 0.358707 | 1_1:+37008188 | None:intergenic |
| AGGAGGGGCGCCGTAGGGTT+GGG | 0.362027 | 1_1:+37008033 | None:intergenic |
| CCTTTGGTGGTTTCTGGTAA+GGG | 0.366050 | 1_1:+37007918 | None:intergenic |
| TCTCACTCCGCCGGCGGCGG+TGG | 0.368349 | 1_1:-37007890 | Msa0020970:CDS |
| CGAGATGCGCTGTTGAGTTT+GGG | 0.385394 | 1_1:-37004956 | Msa0020970:CDS |
| GTCTCCAAGTTTGACAAAAC+TGG | 0.393079 | 1_1:-37004899 | Msa0020970:CDS |
| CAGTACTATCCTAAGCTATC+AGG | 0.399864 | 1_1:+37003611 | None:intergenic |
| GAGGTGGCGCGCCGTAGGAT+TGG | 0.404697 | 1_1:+37008137 | None:intergenic |
| AGGGTTGGCCGTAGGAGGTG+GGG | 0.404892 | 1_1:+37007957 | None:intergenic |
| GAGGAGGGGCGCCGTAGGGT+TGG | 0.408524 | 1_1:+37008032 | None:intergenic |
| GACTCTCACTCCGCCGGCGG+CGG | 0.409937 | 1_1:-37007893 | Msa0020970:CDS |
| GCGGAGTGAGAGTCTTCCTT+TGG | 0.413197 | 1_1:+37007902 | None:intergenic |
| AAATTCAAGGAGAAGGATAC+AGG | 0.415061 | 1_1:-37003691 | Msa0020970:CDS |
| AGGTGGCGCGCCGTAGGATT+GGG | 0.418487 | 1_1:+37008138 | None:intergenic |
| GGCAGCGCCACCGCCGCCGG+CGG | 0.431730 | 1_1:+37007883 | None:intergenic |
| AAAATAACATACTGTACCTC+TGG | 0.432834 | 1_1:+37004754 | None:intergenic |
| GGGCTTGCATACGCCGGTGG+TGG | 0.433601 | 1_1:+37007857 | None:intergenic |
| AACTATGCTTGGATCGGTGC+CGG | 0.438940 | 1_1:+37007802 | None:intergenic |
| GAGGGTTGGCCGTAGGAGGT+GGG | 0.441171 | 1_1:+37007956 | None:intergenic |
| AACACTAATGTCAAGAAGAT+TGG | 0.446887 | 1_1:-37007650 | Msa0020970:intron |
| AGTCAGCATAAACGCCTCAT+AGG | 0.454448 | 1_1:+37003645 | None:intergenic |
| GTAGGCAGCGCCACCGCCGC+CGG | 0.455288 | 1_1:+37007880 | None:intergenic |
| GAGTGAGAGTCTTCCTTTGG+TGG | 0.469738 | 1_1:+37007905 | None:intergenic |
| GTGGATGTGAGCCGTGAGAT+TGG | 0.469783 | 1_1:+37008110 | None:intergenic |
| TGAAAGCATGCAACTATGCT+TGG | 0.470186 | 1_1:+37007791 | None:intergenic |
| TTGAGAGATTTGACAAGGAT+AGG | 0.472164 | 1_1:-37005006 | Msa0020970:CDS |
| GATGGAGGAGGGGCGCCGTA+GGG | 0.474449 | 1_1:+37008028 | None:intergenic |
| AGTTGCATGCTTTCAGGTGG+CGG | 0.477899 | 1_1:-37007783 | Msa0020970:CDS |
| CAGCGTAAGGAGCGGAGGGT+TGG | 0.481863 | 1_1:+37007942 | None:intergenic |
| AACAGAGAAGTGAATTCCTT+GGG | 0.482058 | 1_1:+37005496 | None:intergenic |
| AATTATAAAGGATTTGGTCT+AGG | 0.483084 | 1_1:-37004788 | Msa0020970:CDS |
| TGCATACGCCGGTGGTGGGT+AGG | 0.484911 | 1_1:+37007862 | None:intergenic |
| CAACCTCCCAGTTACGGTTA+CGG | 0.486274 | 1_1:-37008181 | Msa0020970:CDS |
| CCTGCCATTCCTGATAGCTT+AGG | 0.487744 | 1_1:-37003620 | None:intergenic |
| CTCCCCTCGTTCAACATGTC+CGG | 0.495132 | 1_1:-37008214 | Msa0020970:exon |
| GGCTTGCATACGCCGGTGGT+GGG | 0.497047 | 1_1:+37007858 | None:intergenic |
| AAACAGAGAAGTGAATTCCT+TGG | 0.497480 | 1_1:+37005495 | None:intergenic |
| AGCGGAGGGTTGGCCGTAGG+AGG | 0.499264 | 1_1:+37007952 | None:intergenic |
| GGGAGGTTGATTTGGGTAGC+CGG | 0.501842 | 1_1:+37008195 | None:intergenic |
| GGTTGGCCGTAGGAGGTGGG+GGG | 0.503103 | 1_1:+37007959 | None:intergenic |
| ATAGGAAAATGTTGCAGAGC+CGG | 0.504522 | 1_1:+37003663 | None:intergenic |
| TTCTGGTAAGGGGCAGCGTA+AGG | 0.505336 | 1_1:+37007929 | None:intergenic |
| AGATGGAGGAGGGGCGCCGT+AGG | 0.513785 | 1_1:+37008027 | None:intergenic |
| TGGATGTGAGCCGTGAGATT+GGG | 0.514086 | 1_1:+37008111 | None:intergenic |
| AGGGGCAGCGTAAGGAGCGG+AGG | 0.515625 | 1_1:+37007937 | None:intergenic |
| AATCTTCTTGACATTAGTGT+TGG | 0.520354 | 1_1:+37007652 | None:intergenic |
| CTTTGGTGGTTTCTGGTAAG+GGG | 0.521399 | 1_1:+37007919 | None:intergenic |
| CCAAATCAACCTCCCAGTTA+CGG | 0.522046 | 1_1:-37008187 | Msa0020970:CDS |
| GGGACTAACTGACAAATTCA+AGG | 0.522153 | 1_1:-37003704 | Msa0020970:CDS |
| GGGGCGCCGTAGGGTTGGGA+TGG | 0.523196 | 1_1:+37008037 | None:intergenic |
| CCCAGTTACGGTTACGGCTA+CGG | 0.528520 | 1_1:-37008175 | Msa0020970:CDS |
| GAGAAGGATACAGGGTATAC+CGG | 0.529864 | 1_1:-37003682 | Msa0020970:CDS |
| CCGTGGGATTGAGATGGCGG+AGG | 0.531055 | 1_1:+37008070 | None:intergenic |
| ACTATGCTTGGATCGGTGCC+GGG | 0.531309 | 1_1:+37007803 | None:intergenic |
| GGAGGGGCACCGTATGATGA+TGG | 0.531589 | 1_1:+37008088 | None:intergenic |
| ACGGAACTAGTGAAGCGAAC+GGG | 0.538388 | 1_1:+37007837 | None:intergenic |
| CCGTAGGATTGGGACGGTGG+TGG | 0.539857 | 1_1:+37008148 | None:intergenic |
| GGGTTATGCTGTTTCTCCTG+TGG | 0.541231 | 1_1:-37004936 | Msa0020970:CDS |
| GGGATGGTGGATGTGAGCCG+TGG | 0.542212 | 1_1:+37008053 | None:intergenic |
| TGGCGCTGCCTACCCACCAC+CGG | 0.543326 | 1_1:-37007870 | Msa0020970:CDS |
| CCTAAGCTATCAGGAATGGC+AGG | 0.545449 | 1_1:+37003620 | None:intergenic |
| GGATGGAGGTGGCGCGCCGT+AGG | 0.546323 | 1_1:+37008132 | None:intergenic |
| CCGTAGGATTGAGATGGAGG+AGG | 0.550942 | 1_1:+37008016 | None:intergenic |
| ACATGTTGAACGAGGGGAGA+GGG | 0.556144 | 1_1:+37008218 | None:intergenic |
| CTATCCTAAGCTATCAGGAA+TGG | 0.558004 | 1_1:+37003616 | None:intergenic |
| AGATGGCGGTGGTGCGCCGT+AGG | 0.558305 | 1_1:+37008000 | None:intergenic |
| GCGCCGTAGGATTGGGACGG+TGG | 0.563160 | 1_1:+37008145 | None:intergenic |
| AACTGACAAATTCAAGGAGA+AGG | 0.566916 | 1_1:-37003698 | Msa0020970:CDS |
| CGTGGGATTGAGATGGCGGA+GGG | 0.574541 | 1_1:+37008071 | None:intergenic |
| GGATGGTGGATGTGAGCCGT+GGG | 0.582265 | 1_1:+37008054 | None:intergenic |
| TTTACAGTCTTCAGAGCTGG+AGG | 0.582721 | 1_1:-37005474 | Msa0020970:CDS |
| AGGAGCGGAGGGTTGGCCGT+AGG | 0.584854 | 1_1:+37007949 | None:intergenic |
| GACATGTTGAACGAGGGGAG+AGG | 0.585181 | 1_1:+37008217 | None:intergenic |
| GGTGCGCCGTAGGATTGAGA+TGG | 0.586750 | 1_1:+37008010 | None:intergenic |
| GTGGCGGATCAAGATGGAAG+TGG | 0.590863 | 1_1:-37007767 | Msa0020970:CDS |
| CCGTGAGATTGGGATGGAGG+TGG | 0.592526 | 1_1:+37008121 | None:intergenic |
| ACTTTGTAATGCAGGACCCA+AGG | 0.592968 | 1_1:-37005512 | Msa0020970:intron |
| CGTAGGATTGAGATGGAGGA+GGG | 0.596668 | 1_1:+37008017 | None:intergenic |
| GCGCCGTAGGATTGAGATGG+AGG | 0.600023 | 1_1:+37008013 | None:intergenic |
| CCTCCGCCATCTCAATCCCA+CGG | 0.601681 | 1_1:-37008070 | Msa0020970:CDS |
| CCACCACCGTCCCAATCCTA+CGG | 0.602134 | 1_1:-37008148 | Msa0020970:CDS |
| CCGTAGCCGTAACCGTAACT+GGG | 0.603337 | 1_1:+37008175 | None:intergenic |
| AACGGGCTTGCATACGCCGG+TGG | 0.606292 | 1_1:+37007854 | None:intergenic |
| CCTCCTCCATCTCAATCCTA+CGG | 0.606864 | 1_1:-37008016 | Msa0020970:CDS |
| TGCTTGGATCGGTGCCGGGA+GGG | 0.607261 | 1_1:+37007807 | None:intergenic |
| GGTGCACCGTAGGACTGAGA+TGG | 0.609595 | 1_1:+37007983 | None:intergenic |
| CATCCACCATCCCAACCCTA+CGG | 0.609859 | 1_1:-37008043 | Msa0020970:CDS |
| GCATGCAACTATGCTTGGAT+CGG | 0.612077 | 1_1:+37007796 | None:intergenic |
| CATAGTTGCATGCTTTCAGG+TGG | 0.617272 | 1_1:-37007786 | Msa0020970:CDS |
| TTTCAGGTGGCGGATCAAGA+TGG | 0.618083 | 1_1:-37007773 | Msa0020970:CDS |
| GGGGCAGCGTAAGGAGCGGA+GGG | 0.618208 | 1_1:+37007938 | None:intergenic |
| GTAAGGGGCAGCGTAAGGAG+CGG | 0.621045 | 1_1:+37007934 | None:intergenic |
| TCACATCCACCATCATCATA+CGG | 0.623284 | 1_1:-37008097 | Msa0020970:CDS |
| CCACCGCCATCTCAGTCCTA+CGG | 0.623426 | 1_1:-37007989 | Msa0020970:CDS |
| TTACAGTCTTCAGAGCTGGA+GGG | 0.623884 | 1_1:-37005473 | Msa0020970:intron |
| ACGAGCAAGTCCAATACCAC+AGG | 0.626927 | 1_1:+37004920 | None:intergenic |
| AATATTTGAGAGATTTGACA+AGG | 0.630255 | 1_1:-37005011 | Msa0020970:CDS |
| CCGTAGGACTGAGATGGCGG+TGG | 0.632485 | 1_1:+37007989 | None:intergenic |
| AAGGAAGACTCTCACTCCGC+CGG | 0.637026 | 1_1:-37007899 | Msa0020970:CDS |
| AGCCGGACATGTTGAACGAG+GGG | 0.638876 | 1_1:+37008212 | None:intergenic |
| GTGCCGGGAGGGAATGTCGA+CGG | 0.640255 | 1_1:+37007818 | None:intergenic |
| GCACCGTAGGACTGAGATGG+CGG | 0.641208 | 1_1:+37007986 | None:intergenic |
| GCGAACGGGCTTGCATACGC+CGG | 0.641842 | 1_1:+37007851 | None:intergenic |
| CCACCTCCATCCCAATCTCA+CGG | 0.643113 | 1_1:-37008121 | Msa0020970:CDS |
| GGCGCGCCGTAGGATTGGGA+CGG | 0.643698 | 1_1:+37008142 | None:intergenic |
| CGATGATAAAGAATTGCAGA+GGG | 0.644489 | 1_1:-37007738 | Msa0020970:CDS |
| GGGGCACCGTATGATGATGG+TGG | 0.647814 | 1_1:+37008091 | None:intergenic |
| GAGCCGTGAGATTGGGATGG+AGG | 0.649963 | 1_1:+37008118 | None:intergenic |
| TGTGAGCCGTGGGATTGAGA+TGG | 0.652224 | 1_1:+37008064 | None:intergenic |
| AGATTTGACAAGGATAGGAG+TGG | 0.653339 | 1_1:-37005001 | Msa0020970:CDS |
| TCCAAGTTTGACAAAACTGG+TGG | 0.653417 | 1_1:-37004896 | Msa0020970:CDS |
| CCCTTACCAGAAACCACCAA+AGG | 0.654843 | 1_1:-37007918 | Msa0020970:CDS |
| GAAGACTCTCACTCCGCCGG+CGG | 0.658698 | 1_1:-37007896 | Msa0020970:CDS |
| ATGCTTGGATCGGTGCCGGG+AGG | 0.658862 | 1_1:+37007806 | None:intergenic |
| GACGGAACTAGTGAAGCGAA+CGG | 0.661804 | 1_1:+37007836 | None:intergenic |
| TGTGAGCCGTGAGATTGGGA+TGG | 0.661955 | 1_1:+37008115 | None:intergenic |
| TAGCCGGACATGTTGAACGA+GGG | 0.663980 | 1_1:+37008211 | None:intergenic |
| AATTCAAGGAGAAGGATACA+GGG | 0.664378 | 1_1:-37003690 | Msa0020970:CDS |
| GAGCCGTGGGATTGAGATGG+CGG | 0.678050 | 1_1:+37008067 | None:intergenic |
| TCGATGATAAAGAATTGCAG+AGG | 0.679963 | 1_1:-37007739 | Msa0020970:CDS |
| GTTCCGTCGACATTCCCTCC+CGG | 0.680369 | 1_1:-37007821 | Msa0020970:CDS |
| GTGGGATTGAGATGGCGGAG+GGG | 0.683956 | 1_1:+37008072 | None:intergenic |
| GTAGGATTGAGATGGAGGAG+GGG | 0.684619 | 1_1:+37008018 | None:intergenic |
| GTAGCCGGACATGTTGAACG+AGG | 0.719509 | 1_1:+37008210 | None:intergenic |
| TAGCCGTAACCGTAACTGGG+AGG | 0.751687 | 1_1:+37008178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATTATATATATTA+TGG | - | chr1_1:37004780-37004799 | Msa0020970:CDS | 0.0% |
| !!! | TATAATTTTTTTATATATGC+AGG | + | chr1_1:37004773-37004792 | None:intergenic | 10.0% |
| !!! | TAAAAAATGAAATTTTAGAA+TGG | + | chr1_1:37004888-37004907 | None:intergenic | 10.0% |
| !! | TTATATAATTATAAAGGATT+TGG | - | chr1_1:37007092-37007111 | Msa0020970:intron | 10.0% |
| !! | AATATAACAAATTATTTAAG+GGG | + | chr1_1:37007338-37007357 | None:intergenic | 10.0% |
| !! | CAATATAACAAATTATTTAA+GGG | + | chr1_1:37007339-37007358 | None:intergenic | 10.0% |
| !! | TCAATATAACAAATTATTTA+AGG | + | chr1_1:37007340-37007359 | None:intergenic | 10.0% |
| !! | TCTTTAATTGGATAATTAAA+TGG | - | chr1_1:37004418-37004437 | Msa0020970:intron | 15.0% |
| !! | CAACAAAAATAGTAAAATTT+GGG | + | chr1_1:37004709-37004728 | None:intergenic | 15.0% |
| !! | TAAAATAACAATTATCAAAC+AGG | + | chr1_1:37004987-37005006 | None:intergenic | 15.0% |
| !! | TTAAATCAACATTAATATGA+TGG | - | chr1_1:37006637-37006656 | Msa0020970:intron | 15.0% |
| !! | TTCAAAATTATGTTTATGAA+AGG | - | chr1_1:37006795-37006814 | Msa0020970:intron | 15.0% |
| !! | CCAACAAAAATAGTAAAATT+TGG | + | chr1_1:37004710-37004729 | None:intergenic | 20.0% |
| !!! | CCAAATTTTACTATTTTTGT+TGG | - | chr1_1:37004707-37004726 | Msa0020970:intron | 20.0% |
| !! | ATATATATTATGGCTATGTT+TGG | - | chr1_1:37004790-37004809 | Msa0020970:CDS | 20.0% |
| !! | ACTCATAAAAATAAGATGTA+AGG | + | chr1_1:37005015-37005034 | None:intergenic | 20.0% |
| !!! | TTATTTTTATGAGTTCATAG+TGG | - | chr1_1:37005021-37005040 | Msa0020970:intron | 20.0% |
| !! | TTTCCAATTAAGAAAATTGT+AGG | + | chr1_1:37005112-37005131 | None:intergenic | 20.0% |
| !!! | CTAACTTAATTTGTAGTTTT+TGG | + | chr1_1:37005208-37005227 | None:intergenic | 20.0% |
| !! | TTGAGAATTAAGATTAACTA+GGG | + | chr1_1:37006465-37006484 | None:intergenic | 20.0% |
| !!! | TACAACTCTTTTTCTTTTAT+TGG | - | chr1_1:37007061-37007080 | Msa0020970:intron | 20.0% |
| !!! | TATAGTTTTTGTTGGTAAAT+TGG | + | chr1_1:37007294-37007313 | None:intergenic | 20.0% |
| !! | ATAAACATAAATCATAGTTC+TGG | + | chr1_1:37007473-37007492 | None:intergenic | 20.0% |
| !! | AGTTATCTAAGAAAAACAAA+AGG | - | chr1_1:37007647-37007666 | Msa0020970:intron | 20.0% |
| !! | CTAAGTTAGAACAAAATTTA+TGG | + | chr1_1:37008088-37008107 | None:intergenic | 20.0% |
| !!! | CATAAATTTTGTTCTAACTT+AGG | - | chr1_1:37008086-37008105 | Msa0020970:CDS | 20.0% |
| ! | AAAACCTAGTTTCACAAAAT+TGG | + | chr1_1:37004288-37004307 | None:intergenic | 25.0% |
| !! | TTTATGGGTTATTCTTTGAT+AGG | - | chr1_1:37004556-37004575 | Msa0020970:intron | 25.0% |
| ! | ATAAAATAATCCCCAAACAA+AGG | - | chr1_1:37004915-37004934 | Msa0020970:CDS | 25.0% |
| !! | ATTGTACAATTCCTTTGTTT+GGG | + | chr1_1:37004929-37004948 | None:intergenic | 25.0% |
| ! | TATTGTACAATTCCTTTGTT+TGG | + | chr1_1:37004930-37004949 | None:intergenic | 25.0% |
| !! | ACACCTACAATTTTCTTAAT+TGG | - | chr1_1:37005106-37005125 | Msa0020970:intron | 25.0% |
| !!! | AGCTAACTTTTTTGAAGAAA+TGG | + | chr1_1:37005239-37005258 | None:intergenic | 25.0% |
| ! | TTGTCTCATAATGAACTTTA+TGG | + | chr1_1:37005348-37005367 | None:intergenic | 25.0% |
| ! | TTATTGAGCTAAGGAATTAA+AGG | - | chr1_1:37005406-37005425 | Msa0020970:intron | 25.0% |
| !!! | CCATTTGAGTCTTTTTTTTA+TGG | + | chr1_1:37005512-37005531 | None:intergenic | 25.0% |
| ! | CCATAAAAAAAAGACTCAAA+TGG | - | chr1_1:37005509-37005528 | Msa0020970:intron | 25.0% |
| ! | AATTGCGGTAAAAAGATTTA+AGG | - | chr1_1:37005799-37005818 | Msa0020970:intron | 25.0% |
| ! | ATTGCGGTAAAAAGATTTAA+GGG | - | chr1_1:37005800-37005819 | Msa0020970:intron | 25.0% |
| ! | TGAGAATTAAGATTAACTAG+GGG | + | chr1_1:37006464-37006483 | None:intergenic | 25.0% |
| ! | GTTGAGAATTAAGATTAACT+AGG | + | chr1_1:37006466-37006485 | None:intergenic | 25.0% |
| ! | GATTATGGTGAAAATCAATA+TGG | - | chr1_1:37006545-37006564 | Msa0020970:intron | 25.0% |
| ! | GATTATGGTGAAAATCAATA+TGG | - | chr1_1:37006545-37006564 | Msa0020970:intron | 25.0% |
| ! | AATATTTGAGAGATTTGACA+AGG | - | chr1_1:37006875-37006894 | Msa0020970:intron | 25.0% |
| !! | AATTATAAAGGATTTGGTCT+AGG | - | chr1_1:37007098-37007117 | Msa0020970:intron | 25.0% |
| !! | TCAAATGGTATAGTTTTTGT+TGG | + | chr1_1:37007302-37007321 | None:intergenic | 25.0% |
| ! | AACAAATTATTTAAGGGGTT+GGG | + | chr1_1:37007333-37007352 | None:intergenic | 25.0% |
| ! | TAACAAATTATTTAAGGGGT+TGG | + | chr1_1:37007334-37007353 | None:intergenic | 25.0% |
| !!! | AATCATAGTTCTGGTATATA+GGG | + | chr1_1:37007464-37007483 | None:intergenic | 25.0% |
| !!! | AAATCATAGTTCTGGTATAT+AGG | + | chr1_1:37007465-37007484 | None:intergenic | 25.0% |
| !! | AAAAACAAAAGGAGTATAGA+GGG | - | chr1_1:37007658-37007677 | Msa0020970:CDS | 25.0% |
| ! | AGATAATGTTTCGTGAATTA+TGG | - | chr1_1:37007852-37007871 | Msa0020970:CDS | 25.0% |
| !! | AGATATTTTATCTTGCCAAA+AGG | + | chr1_1:37008139-37008158 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGTGTGTATTTCA+GGG | - | chr1_1:37008162-37008181 | Msa0020970:CDS | 25.0% |
| AATCTTCTTGACATTAGTGT+TGG | + | chr1_1:37004237-37004256 | None:intergenic | 30.0% | |
| AACACTAATGTCAAGAAGAT+TGG | - | chr1_1:37004236-37004255 | Msa0020970:intron | 30.0% | |
| CCAATTAAAGAATGTACTAG+TGG | + | chr1_1:37004409-37004428 | None:intergenic | 30.0% | |
| CCACTAGTACATTCTTTAAT+TGG | - | chr1_1:37004406-37004425 | Msa0020970:intron | 30.0% | |
| ATAGTTAATTGCATGCGATT+TGG | - | chr1_1:37004450-37004469 | Msa0020970:intron | 30.0% | |
| TGTTTGGTAAGACATAAAAC+TGG | - | chr1_1:37004806-37004825 | Msa0020970:CDS | 30.0% | |
| GTAAGACATAAAACTGGTAA+AGG | - | chr1_1:37004812-37004831 | Msa0020970:CDS | 30.0% | |
| ! | TTGTACAATTCCTTTGTTTG+GGG | + | chr1_1:37004928-37004947 | None:intergenic | 30.0% |
| !!! | CCATTGTAAACTAGTTTTAG+CGG | - | chr1_1:37005299-37005318 | Msa0020970:intron | 30.0% |
| CTTTATGGTTCATTACAGAA+AGG | + | chr1_1:37005333-37005352 | None:intergenic | 30.0% | |
| ATGAGACAATTAGACTCAAA+TGG | - | chr1_1:37005359-37005378 | Msa0020970:intron | 30.0% | |
| ATTAGACTCAAATGGATACT+CGG | - | chr1_1:37005367-37005386 | Msa0020970:intron | 30.0% | |
| AAGCTAACTTTATTGAGCTA+AGG | - | chr1_1:37005397-37005416 | Msa0020970:intron | 30.0% | |
| ! | TCTAGAGAGTAGAGTATTAT+GGG | - | chr1_1:37005563-37005582 | Msa0020970:intron | 30.0% |
| !! | CTGATTTGTTGTTAATGAGA+AGG | + | chr1_1:37005590-37005609 | None:intergenic | 30.0% |
| TCTCATTAACAACAAATCAG+AGG | - | chr1_1:37005590-37005609 | Msa0020970:intron | 30.0% | |
| !! | TTCTAAAGTGAGCAAATCAA+GGG | + | chr1_1:37005666-37005685 | None:intergenic | 30.0% |
| GAAATCGTATTAACGAAAGA+TGG | + | chr1_1:37005699-37005718 | None:intergenic | 30.0% | |
| TTATAGATCTCAGTAAACAG+GGG | + | chr1_1:37005778-37005797 | None:intergenic | 30.0% | |
| GTTATAGATCTCAGTAAACA+GGG | + | chr1_1:37005779-37005798 | None:intergenic | 30.0% | |
| TGTTATAGATCTCAGTAAAC+AGG | + | chr1_1:37005780-37005799 | None:intergenic | 30.0% | |
| ACTGAGATCTATAACAATTG+CGG | - | chr1_1:37005784-37005803 | Msa0020970:intron | 30.0% | |
| !! | TAAGGGATTGTTATTTCTCT+TGG | - | chr1_1:37005817-37005836 | Msa0020970:intron | 30.0% |
| !! | AAGGGATTGTTATTTCTCTT+GGG | - | chr1_1:37005818-37005837 | Msa0020970:intron | 30.0% |
| TCTAATCAAATCAAGGTTGA+AGG | + | chr1_1:37005896-37005915 | None:intergenic | 30.0% | |
| ! | AACCTTGATTTGATTAGAAG+TGG | - | chr1_1:37005898-37005917 | Msa0020970:intron | 30.0% |
| TACCACTTCTAATCAAATCA+AGG | + | chr1_1:37005903-37005922 | None:intergenic | 30.0% | |
| ! | TTGAATGCTTTTAAGCTAAG+AGG | + | chr1_1:37005973-37005992 | None:intergenic | 30.0% |
| !! | TGCTGGACATTGTTTTATAA+AGG | + | chr1_1:37006040-37006059 | None:intergenic | 30.0% |
| ! | ATTTCTGCAAAAGTACAACT+TGG | + | chr1_1:37006201-37006220 | None:intergenic | 30.0% |
| ! | ATTCTTCACTGCTTGAATTT+TGG | - | chr1_1:37006351-37006370 | Msa0020970:intron | 30.0% |
| ! | AATTTTGGACTTTGTAATGC+AGG | - | chr1_1:37006366-37006385 | Msa0020970:intron | 30.0% |
| GTGTGTGTTTGAATTCAAAA+TGG | - | chr1_1:37006489-37006508 | Msa0020970:intron | 30.0% | |
| TTACCTATCAAGCATGATTA+TGG | - | chr1_1:37006530-37006549 | Msa0020970:intron | 30.0% | |
| TTACCTATCAAGCATGATTA+TGG | - | chr1_1:37006530-37006549 | Msa0020970:intron | 30.0% | |
| AGTTAGAACACTGTTTCATA+AGG | + | chr1_1:37006835-37006854 | None:intergenic | 30.0% | |
| TATGACAATTTCATCGAGTA+TGG | - | chr1_1:37007032-37007051 | Msa0020970:intron | 30.0% | |
| AAAATAACATACTGTACCTC+TGG | + | chr1_1:37007135-37007154 | None:intergenic | 30.0% | |
| AAGTTGTAACTATAAAGCCT+TGG | - | chr1_1:37007175-37007194 | Msa0020970:intron | 30.0% | |
| ATTGAAAATTCAAGTGTCCA+AGG | + | chr1_1:37007195-37007214 | None:intergenic | 30.0% | |
| GACAAAGTAGTAATTAACAC+AGG | - | chr1_1:37007221-37007240 | Msa0020970:intron | 30.0% | |
| !! | AGTTTTTGTTGGTAAATTGG+AGG | + | chr1_1:37007291-37007310 | None:intergenic | 30.0% |
| GTCAACTTTCGTTATTTAAC+TGG | - | chr1_1:37007412-37007431 | Msa0020970:intron | 30.0% | |
| ! | ATGTTTATCCTTGTCTGTTT+TGG | - | chr1_1:37007485-37007504 | Msa0020970:intron | 30.0% |
| ! | ATTTTACACCAAAACAGACA+AGG | + | chr1_1:37007496-37007515 | None:intergenic | 30.0% |
| !!! | TTGTCTGTTTTGGTGTAAAA+TGG | - | chr1_1:37007495-37007514 | Msa0020970:intron | 30.0% |
| ! | GAAAAACAAAAGGAGTATAG+AGG | - | chr1_1:37007657-37007676 | Msa0020970:CDS | 30.0% |
| AACATGAAACATATTCAACC+TGG | - | chr1_1:37008043-37008062 | Msa0020970:CDS | 30.0% | |
| TCATACTAGGATATAAAACC+AGG | + | chr1_1:37008064-37008083 | None:intergenic | 30.0% | |
| CAAAATTTATGGCTCATACT+AGG | + | chr1_1:37008077-37008096 | None:intergenic | 30.0% | |
| ! | AATCTACGATATGTTCCTTT+TGG | - | chr1_1:37008121-37008140 | Msa0020970:CDS | 30.0% |
| !! | CTTTAGTTTGTGTGTATTTC+AGG | - | chr1_1:37008161-37008180 | Msa0020970:CDS | 30.0% |
| TCGATGATAAAGAATTGCAG+AGG | - | chr1_1:37004147-37004166 | Msa0020970:intron | 35.0% | |
| CGATGATAAAGAATTGCAGA+GGG | - | chr1_1:37004148-37004167 | Msa0020970:intron | 35.0% | |
| CCTAGTTTCACAAAATTGGA+AGG | + | chr1_1:37004284-37004303 | None:intergenic | 35.0% | |
| ! | CCTTCCAATTTTGTGAAACT+AGG | - | chr1_1:37004281-37004300 | Msa0020970:intron | 35.0% |
| ! | TAGAAGTATAATTGCGTACG+CGG | - | chr1_1:37004519-37004538 | Msa0020970:intron | 35.0% |
| !!! | GGGACTTTTTTGTCGTTTAT+GGG | - | chr1_1:37004541-37004560 | Msa0020970:intron | 35.0% |
| ! | TTTATTCCACGTGTGTGTTT+TGG | - | chr1_1:37004606-37004625 | Msa0020970:intron | 35.0% |
| ! | TTATTCCACGTGTGTGTTTT+GGG | - | chr1_1:37004607-37004626 | Msa0020970:intron | 35.0% |
| ATGACTAGATCTCGGATAAA+TGG | + | chr1_1:37004855-37004874 | None:intergenic | 35.0% | |
| TTTATCCGAGATCTAGTCAT+AGG | - | chr1_1:37004855-37004874 | Msa0020970:CDS | 35.0% | |
| GCTAGATTATAGCTCATAGT+GGG | + | chr1_1:37005268-37005287 | None:intergenic | 35.0% | |
| AGCTAGATTATAGCTCATAG+TGG | + | chr1_1:37005269-37005288 | None:intergenic | 35.0% | |
| ! | CCGCTAAAACTAGTTTACAA+TGG | + | chr1_1:37005302-37005321 | None:intergenic | 35.0% |
| TTAGACTCAAATGGATACTC+GGG | - | chr1_1:37005368-37005387 | Msa0020970:intron | 35.0% | |
| TTGAGCTAAGGAATTAAAGG+AGG | - | chr1_1:37005409-37005428 | Msa0020970:intron | 35.0% | |
| CTAAGGAATTAAAGGAGGTA+AGG | - | chr1_1:37005414-37005433 | Msa0020970:intron | 35.0% | |
| CATAATACTCTACTCTCTAG+AGG | + | chr1_1:37005564-37005583 | None:intergenic | 35.0% | |
| ! | CTCTAGAGAGTAGAGTATTA+TGG | - | chr1_1:37005562-37005581 | Msa0020970:intron | 35.0% |
| ! | CTAGAGAGTAGAGTATTATG+GGG | - | chr1_1:37005564-37005583 | Msa0020970:intron | 35.0% |
| CATTAACAACAAATCAGAGG+TGG | - | chr1_1:37005593-37005612 | Msa0020970:intron | 35.0% | |
| !! | CTTCTAAAGTGAGCAAATCA+AGG | + | chr1_1:37005667-37005686 | None:intergenic | 35.0% |
| !! | AGGGATTGTTATTTCTCTTG+GGG | - | chr1_1:37005819-37005838 | Msa0020970:intron | 35.0% |
| GCTGAATGTGCATATAAGTA+GGG | + | chr1_1:37006065-37006084 | None:intergenic | 35.0% | |
| TGCTGAATGTGCATATAAGT+AGG | + | chr1_1:37006066-37006085 | None:intergenic | 35.0% | |
| TAGGATATCTATAGCAGGTA+TGG | + | chr1_1:37006169-37006188 | None:intergenic | 35.0% | |
| CAAACTAGGATATCTATAGC+AGG | + | chr1_1:37006174-37006193 | None:intergenic | 35.0% | |
| TACAACTTGGACATCAAACT+AGG | + | chr1_1:37006188-37006207 | None:intergenic | 35.0% | |
| TGAACAGCACGTTAGATTAA+GGG | + | chr1_1:37006296-37006315 | None:intergenic | 35.0% | |
| ATGAACAGCACGTTAGATTA+AGG | + | chr1_1:37006297-37006316 | None:intergenic | 35.0% | |
| AACAGAGAAGTGAATTCCTT+GGG | + | chr1_1:37006393-37006412 | None:intergenic | 35.0% | |
| AAACAGAGAAGTGAATTCCT+TGG | + | chr1_1:37006394-37006413 | None:intergenic | 35.0% | |
| ! | CTAGGGGAAAACTTTGAAAA+AGG | + | chr1_1:37006448-37006467 | None:intergenic | 35.0% |
| TCACCATAATCATGCTTGAT+AGG | + | chr1_1:37006536-37006555 | None:intergenic | 35.0% | |
| TCACCATAATCATGCTTGAT+AGG | + | chr1_1:37006536-37006555 | None:intergenic | 35.0% | |
| TGGTGAAAATCAATATGGTG+TGG | - | chr1_1:37006606-37006625 | Msa0020970:intron | 35.0% | |
| TGAAAATCAATATGGTGTGG+AGG | - | chr1_1:37006609-37006628 | Msa0020970:intron | 35.0% | |
| ! | ATGATGGTAACTTTTGCATG+AGG | - | chr1_1:37006653-37006672 | Msa0020970:intron | 35.0% |
| ! | TGATGGTAACTTTTGCATGA+GGG | - | chr1_1:37006654-37006673 | Msa0020970:intron | 35.0% |
| GAAACAGTGTTCTAACTAAC+TGG | - | chr1_1:37006838-37006857 | Msa0020970:intron | 35.0% | |
| !! | AACTAACTGGTTGTTGTTTC+AGG | - | chr1_1:37006851-37006870 | Msa0020970:intron | 35.0% |
| !! | ACTAACTGGTTGTTGTTTCA+GGG | - | chr1_1:37006852-37006871 | Msa0020970:intron | 35.0% |
| TTGAGAGATTTGACAAGGAT+AGG | - | chr1_1:37006880-37006899 | Msa0020970:intron | 35.0% | |
| ATTATTTAAGGGGTTGGGTT+GGG | + | chr1_1:37007328-37007347 | None:intergenic | 35.0% | |
| AATTATTTAAGGGGTTGGGT+TGG | + | chr1_1:37007329-37007348 | None:intergenic | 35.0% | |
| ! | AAAGGAGTATAGAGGGTTTA+AGG | - | chr1_1:37007665-37007684 | Msa0020970:CDS | 35.0% |
| ! | AAGGAGTATAGAGGGTTTAA+GGG | - | chr1_1:37007666-37007685 | Msa0020970:CDS | 35.0% |
| AATCAATTTCCTGTTACACG+TGG | + | chr1_1:37007914-37007933 | None:intergenic | 35.0% | |
| ! | TTTTCACTTCCAATCTCCTA+TGG | - | chr1_1:37007932-37007951 | Msa0020970:CDS | 35.0% |
| AATCTCCTATGGTTTCACAA+CGG | - | chr1_1:37007943-37007962 | Msa0020970:CDS | 35.0% | |
| AACTGACAAATTCAAGGAGA+AGG | - | chr1_1:37008188-37008207 | Msa0020970:CDS | 35.0% | |
| AAATTCAAGGAGAAGGATAC+AGG | - | chr1_1:37008195-37008214 | Msa0020970:CDS | 35.0% | |
| AATTCAAGGAGAAGGATACA+GGG | - | chr1_1:37008196-37008215 | Msa0020970:CDS | 35.0% | |
| TCACATCCACCATCATCATA+CGG | - | chr1_1:37003789-37003808 | Msa0020970:intron | 40.0% | |
| ! | TGAAAGCATGCAACTATGCT+TGG | + | chr1_1:37004098-37004117 | None:intergenic | 40.0% |
| AAGCATAGTTGCATGCTTTC+AGG | - | chr1_1:37004097-37004116 | Msa0020970:intron | 40.0% | |
| !! | TTTCTGCTAATTTGCTCCGT+TGG | - | chr1_1:37004305-37004324 | Msa0020970:intron | 40.0% |
| !! | CTAATTTGCTCCGTTGGAAT+GGG | - | chr1_1:37004311-37004330 | Msa0020970:intron | 40.0% |
| !! | TAATTTGCTCCGTTGGAATG+GGG | - | chr1_1:37004312-37004331 | Msa0020970:intron | 40.0% |
| ! | AGAAGTATAATTGCGTACGC+GGG | - | chr1_1:37004520-37004539 | Msa0020970:intron | 40.0% |
| !!! | GGGGACTTTTTTGTCGTTTA+TGG | - | chr1_1:37004540-37004559 | Msa0020970:intron | 40.0% |
| TTGATAGGATCCATTTGACG+CGG | - | chr1_1:37004571-37004590 | Msa0020970:intron | 40.0% | |
| ! | TATTCCACGTGTGTGTTTTG+GGG | - | chr1_1:37004608-37004627 | Msa0020970:intron | 40.0% |
| TGCTACCTATGACTAGATCT+CGG | + | chr1_1:37004863-37004882 | None:intergenic | 40.0% | |
| TCAAATGGATACTCGGGAAT+GGG | - | chr1_1:37005374-37005393 | Msa0020970:intron | 40.0% | |
| AAGGTCCATGGTTCGAATAT+TGG | - | chr1_1:37005441-37005460 | Msa0020970:intron | 40.0% | |
| ! | CATGGTTCGAATATTGGCTA+GGG | - | chr1_1:37005447-37005466 | Msa0020970:intron | 40.0% |
| TAAAGTGAGCAAATCAAGGG+TGG | + | chr1_1:37005663-37005682 | None:intergenic | 40.0% | |
| TGCATATAAGTAGGGTTTGC+TGG | + | chr1_1:37006057-37006076 | None:intergenic | 40.0% | |
| CAGGTATGGTATCTGTAACA+AGG | + | chr1_1:37006155-37006174 | None:intergenic | 40.0% | |
| CAAGCAGTGAAGAATGAAGA+TGG | + | chr1_1:37006346-37006365 | None:intergenic | 40.0% | |
| ! | TGTTTTACAGTCTTCAGAGC+TGG | - | chr1_1:37006409-37006428 | Msa0020970:intron | 40.0% |
| GACAAGTTTGATGCAAAGCT+TGG | + | chr1_1:37006694-37006713 | None:intergenic | 40.0% | |
| AGATTTGACAAGGATAGGAG+TGG | - | chr1_1:37006885-37006904 | Msa0020970:intron | 40.0% | |
| GTCTCCAAGTTTGACAAAAC+TGG | - | chr1_1:37006987-37007006 | Msa0020970:intron | 40.0% | |
| TCCAAGTTTGACAAAACTGG+TGG | - | chr1_1:37006990-37007009 | Msa0020970:intron | 40.0% | |
| TATAGAGGGTTTAAGGGCTT+CGG | - | chr1_1:37007672-37007691 | Msa0020970:CDS | 40.0% | |
| GTTGTGAAACCATAGGAGAT+TGG | + | chr1_1:37007944-37007963 | None:intergenic | 40.0% | |
| ! | ACAACGGCATGATGTTTTGT+TGG | - | chr1_1:37007959-37007978 | Msa0020970:CDS | 40.0% |
| GGGACTAACTGACAAATTCA+AGG | - | chr1_1:37008182-37008201 | Msa0020970:CDS | 40.0% | |
| ATAGGAAAATGTTGCAGAGC+CGG | + | chr1_1:37008226-37008245 | None:intergenic | 40.0% | |
| ! | CTCTGCAACATTTTCCTATG+AGG | - | chr1_1:37008227-37008246 | Msa0020970:five_prime_UTR | 40.0% |
| ! | CGTAACTGGGAGGTTGATTT+GGG | + | chr1_1:37003701-37003720 | None:intergenic | 45.0% |
| CCAAATCAACCTCCCAGTTA+CGG | - | chr1_1:37003699-37003718 | Msa0020970:CDS | 45.0% | |
| !! | CTTTGGTGGTTTCTGGTAAG+GGG | + | chr1_1:37003970-37003989 | None:intergenic | 45.0% |
| !! | CCTTTGGTGGTTTCTGGTAA+GGG | + | chr1_1:37003971-37003990 | None:intergenic | 45.0% |
| !! | TCCTTTGGTGGTTTCTGGTA+AGG | + | chr1_1:37003972-37003991 | None:intergenic | 45.0% |
| ! | AGTCTTCCTTTGGTGGTTTC+TGG | + | chr1_1:37003977-37003996 | None:intergenic | 45.0% |
| GCATGCAACTATGCTTGGAT+CGG | + | chr1_1:37004093-37004112 | None:intergenic | 45.0% | |
| CATAGTTGCATGCTTTCAGG+TGG | - | chr1_1:37004100-37004119 | Msa0020970:intron | 45.0% | |
| !! | GCTAATTTGCTCCGTTGGAA+TGG | - | chr1_1:37004310-37004329 | Msa0020970:intron | 45.0% |
| GAAGTATAATTGCGTACGCG+GGG | - | chr1_1:37004521-37004540 | Msa0020970:intron | 45.0% | |
| TACAAAGAAGCCGCGTCAAA+TGG | + | chr1_1:37004584-37004603 | None:intergenic | 45.0% | |
| !! | ATTCCACGTGTGTGTTTTGG+GGG | - | chr1_1:37004609-37004628 | Msa0020970:intron | 45.0% |
| CTCAAATGGATACTCGGGAA+TGG | - | chr1_1:37005373-37005392 | Msa0020970:intron | 45.0% | |
| TTAAAGGAGGTAAGGAGCGA+AGG | - | chr1_1:37005422-37005441 | Msa0020970:intron | 45.0% | |
| CCTAGCCAATATTCGAACCA+TGG | + | chr1_1:37005449-37005468 | None:intergenic | 45.0% | |
| ! | CCATGGTTCGAATATTGGCT+AGG | - | chr1_1:37005446-37005465 | Msa0020970:intron | 45.0% |
| ! | ACTCTACTCTCTAGAGGAGT+CGG | + | chr1_1:37005558-37005577 | None:intergenic | 45.0% |
| CAAGGAAAGCTTACAGAGCT+TGG | + | chr1_1:37005742-37005761 | None:intergenic | 45.0% | |
| GCATACTACATCTCAAGCTC+TGG | + | chr1_1:37006111-37006130 | None:intergenic | 45.0% | |
| ! | CTAACGTGCTGTTCATCGAT+TGG | - | chr1_1:37006301-37006320 | Msa0020970:intron | 45.0% |
| ACTTTGTAATGCAGGACCCA+AGG | - | chr1_1:37006374-37006393 | Msa0020970:intron | 45.0% | |
| TTTACAGTCTTCAGAGCTGG+AGG | - | chr1_1:37006412-37006431 | Msa0020970:intron | 45.0% | |
| TTACAGTCTTCAGAGCTGGA+GGG | - | chr1_1:37006413-37006432 | Msa0020970:intron | 45.0% | |
| ! | TGCATCAAACTTGTCGCTTG+AGG | - | chr1_1:37006699-37006718 | Msa0020970:intron | 45.0% |
| !! | TGCTGTTTCTCCTGTGGTAT+TGG | - | chr1_1:37006956-37006975 | Msa0020970:intron | 45.0% |
| !! | GCCACCAGTTTTGTCAAACT+TGG | + | chr1_1:37006994-37007013 | None:intergenic | 45.0% |
| !!! | CTAGGTGTCTTGTTTTCCAG+AGG | - | chr1_1:37007116-37007135 | Msa0020970:intron | 45.0% |
| !! | CTTCCTTGTTTGCTGTTGCA+TGG | - | chr1_1:37007535-37007554 | Msa0020970:intron | 45.0% |
| ACACCATGCAACAGCAAACA+AGG | + | chr1_1:37007541-37007560 | None:intergenic | 45.0% | |
| TCATGCCGTTGTGAAACCAT+AGG | + | chr1_1:37007951-37007970 | None:intergenic | 45.0% | |
| GAGAAGGATACAGGGTATAC+CGG | - | chr1_1:37008204-37008223 | Msa0020970:exon | 45.0% | |
| AGTCAGCATAAACGCCTCAT+AGG | + | chr1_1:37008244-37008263 | None:intergenic | 45.0% | |
| !!! | TTACTTTTATATAATTATAA+AGG | - | chr1_1:37007086-37007105 | Msa0020970:intron | 5.0% |
| ACATGTTGAACGAGGGGAGA+GGG | + | chr1_1:37003671-37003690 | None:intergenic | 50.0% | |
| TAGCCGGACATGTTGAACGA+GGG | + | chr1_1:37003678-37003697 | None:intergenic | 50.0% | |
| ! | CCGTAACTGGGAGGTTGATT+TGG | + | chr1_1:37003702-37003721 | None:intergenic | 50.0% |
| CAACCTCCCAGTTACGGTTA+CGG | - | chr1_1:37003705-37003724 | Msa0020970:CDS | 50.0% | |
| TGGATGTGAGCCGTGAGATT+GGG | + | chr1_1:37003778-37003797 | None:intergenic | 50.0% | |
| GTAGGATTGAGATGGAGGAG+GGG | + | chr1_1:37003871-37003890 | None:intergenic | 50.0% | |
| CGTAGGATTGAGATGGAGGA+GGG | + | chr1_1:37003872-37003891 | None:intergenic | 50.0% | |
| CCTCCTCCATCTCAATCCTA+CGG | - | chr1_1:37003870-37003889 | Msa0020970:intron | 50.0% | |
| CCCTTACCAGAAACCACCAA+AGG | - | chr1_1:37003968-37003987 | Msa0020970:intron | 50.0% | |
| GAGTGAGAGTCTTCCTTTGG+TGG | + | chr1_1:37003984-37004003 | None:intergenic | 50.0% | |
| ACGGAACTAGTGAAGCGAAC+GGG | + | chr1_1:37004052-37004071 | None:intergenic | 50.0% | |
| GACGGAACTAGTGAAGCGAA+CGG | + | chr1_1:37004053-37004072 | None:intergenic | 50.0% | |
| AACTATGCTTGGATCGGTGC+CGG | + | chr1_1:37004087-37004106 | None:intergenic | 50.0% | |
| ! | AGTTGCATGCTTTCAGGTGG+CGG | - | chr1_1:37004103-37004122 | Msa0020970:intron | 50.0% |
| !! | TTTCAGGTGGCGGATCAAGA+TGG | - | chr1_1:37004113-37004132 | Msa0020970:intron | 50.0% |
| CGCACTTTATCAACGTACGC+CGG | + | chr1_1:37004341-37004360 | None:intergenic | 50.0% | |
| !! | CGCGTTTTCAAGAGTAGAGC+AGG | + | chr1_1:37004480-37004499 | None:intergenic | 50.0% |
| !! | TAAACAGGGGTGCTCGGAAA+AGG | + | chr1_1:37005765-37005784 | None:intergenic | 50.0% |
| !! | TCTCAGTAAACAGGGGTGCT+CGG | + | chr1_1:37005771-37005790 | None:intergenic | 50.0% |
| CGAGATGCGCTGTTGAGTTT+GGG | - | chr1_1:37006930-37006949 | Msa0020970:intron | 50.0% | |
| !! | GGGTTATGCTGTTTCTCCTG+TGG | - | chr1_1:37006950-37006969 | Msa0020970:intron | 50.0% |
| ACGAGCAAGTCCAATACCAC+AGG | + | chr1_1:37006969-37006988 | None:intergenic | 50.0% | |
| !! | GGTTGGGTTGGGAGATCAAA+TGG | + | chr1_1:37007317-37007336 | None:intergenic | 50.0% |
| CATTAGCAGCCACGTGTAAC+AGG | - | chr1_1:37007902-37007921 | Msa0020970:CDS | 50.0% | |
| GACATGTTGAACGAGGGGAG+AGG | + | chr1_1:37003672-37003691 | None:intergenic | 55.0% | |
| CTCCCCTCGTTCAACATGTC+CGG | - | chr1_1:37003672-37003691 | Msa0020970:CDS | 55.0% | |
| AGCCGGACATGTTGAACGAG+GGG | + | chr1_1:37003677-37003696 | None:intergenic | 55.0% | |
| GTAGCCGGACATGTTGAACG+AGG | + | chr1_1:37003679-37003698 | None:intergenic | 55.0% | |
| !! | GGGAGGTTGATTTGGGTAGC+CGG | + | chr1_1:37003694-37003713 | None:intergenic | 55.0% |
| TAGCCGTAACCGTAACTGGG+AGG | + | chr1_1:37003711-37003730 | None:intergenic | 55.0% | |
| CCGTAGCCGTAACCGTAACT+GGG | + | chr1_1:37003714-37003733 | None:intergenic | 55.0% | |
| CCCAGTTACGGTTACGGCTA+CGG | - | chr1_1:37003711-37003730 | Msa0020970:intron | 55.0% | |
| CCACCTCCATCCCAATCTCA+CGG | - | chr1_1:37003765-37003784 | Msa0020970:intron | 55.0% | |
| TGTGAGCCGTGAGATTGGGA+TGG | + | chr1_1:37003774-37003793 | None:intergenic | 55.0% | |
| GTGGATGTGAGCCGTGAGAT+TGG | + | chr1_1:37003779-37003798 | None:intergenic | 55.0% | |
| TGTGAGCCGTGGGATTGAGA+TGG | + | chr1_1:37003825-37003844 | None:intergenic | 55.0% | |
| CATCCACCATCCCAACCCTA+CGG | - | chr1_1:37003843-37003862 | Msa0020970:intron | 55.0% | |
| CCGTAGGATTGAGATGGAGG+AGG | + | chr1_1:37003873-37003892 | None:intergenic | 55.0% | |
| TTCTGGTAAGGGGCAGCGTA+AGG | + | chr1_1:37003960-37003979 | None:intergenic | 55.0% | |
| GCGGAGTGAGAGTCTTCCTT+TGG | + | chr1_1:37003987-37004006 | None:intergenic | 55.0% | |
| AAGGAAGACTCTCACTCCGC+CGG | - | chr1_1:37003987-37004006 | Msa0020970:intron | 55.0% | |
| ! | ACTATGCTTGGATCGGTGCC+GGG | + | chr1_1:37004086-37004105 | None:intergenic | 55.0% |
| !! | GTGGCGGATCAAGATGGAAG+TGG | - | chr1_1:37004119-37004138 | Msa0020970:intron | 55.0% |
| CTCCGTTGGAATGGGGTTTC+CGG | - | chr1_1:37004319-37004338 | Msa0020970:intron | 55.0% | |
| ! | GCGCGTGGCAAAGGGTATAA+CGG | + | chr1_1:37004379-37004398 | None:intergenic | 55.0% |
| GTGTCATAGCGCGTGGCAAA+GGG | + | chr1_1:37004387-37004406 | None:intergenic | 55.0% | |
| !! | ACTAGTGGTGTCATAGCGCG+TGG | + | chr1_1:37004394-37004413 | None:intergenic | 55.0% |
| AGACCCCCAAAACACACACG+TGG | + | chr1_1:37004615-37004634 | None:intergenic | 55.0% | |
| AGGTAAGGAGCGAAGGTCCA+TGG | - | chr1_1:37005429-37005448 | Msa0020970:intron | 55.0% | |
| GCGAGATGCGCTGTTGAGTT+TGG | - | chr1_1:37006929-37006948 | Msa0020970:intron | 55.0% | |
| GCCGTAGCCGTAACCGTAAC+TGG | + | chr1_1:37003715-37003734 | None:intergenic | 60.0% | |
| CCACCACCGTCCCAATCCTA+CGG | - | chr1_1:37003738-37003757 | Msa0020970:intron | 60.0% | |
| CCGTGAGATTGGGATGGAGG+TGG | + | chr1_1:37003768-37003787 | None:intergenic | 60.0% | |
| GAGCCGTGAGATTGGGATGG+AGG | + | chr1_1:37003771-37003790 | None:intergenic | 60.0% | |
| !! | GGGGCACCGTATGATGATGG+TGG | + | chr1_1:37003798-37003817 | None:intergenic | 60.0% |
| !! | GGAGGGGCACCGTATGATGA+TGG | + | chr1_1:37003801-37003820 | None:intergenic | 60.0% |
| !! | GTGGGATTGAGATGGCGGAG+GGG | + | chr1_1:37003817-37003836 | None:intergenic | 60.0% |
| !! | CGTGGGATTGAGATGGCGGA+GGG | + | chr1_1:37003818-37003837 | None:intergenic | 60.0% |
| CCTCCGCCATCTCAATCCCA+CGG | - | chr1_1:37003816-37003835 | Msa0020970:intron | 60.0% | |
| GAGCCGTGGGATTGAGATGG+CGG | + | chr1_1:37003822-37003841 | None:intergenic | 60.0% | |
| !! | GGATGGTGGATGTGAGCCGT+GGG | + | chr1_1:37003835-37003854 | None:intergenic | 60.0% |
| GCGCCGTAGGATTGAGATGG+AGG | + | chr1_1:37003876-37003895 | None:intergenic | 60.0% | |
| GGTGCGCCGTAGGATTGAGA+TGG | + | chr1_1:37003879-37003898 | None:intergenic | 60.0% | |
| CCACCGCCATCTCAGTCCTA+CGG | - | chr1_1:37003897-37003916 | Msa0020970:intron | 60.0% | |
| GCACCGTAGGACTGAGATGG+CGG | + | chr1_1:37003903-37003922 | None:intergenic | 60.0% | |
| GGTGCACCGTAGGACTGAGA+TGG | + | chr1_1:37003906-37003925 | None:intergenic | 60.0% | |
| GTAAGGGGCAGCGTAAGGAG+CGG | + | chr1_1:37003955-37003974 | None:intergenic | 60.0% | |
| GTTCCGTCGACATTCCCTCC+CGG | - | chr1_1:37004065-37004084 | Msa0020970:intron | 60.0% | |
| CGCCGGAAACCCCATTCCAA+CGG | + | chr1_1:37004324-37004343 | None:intergenic | 60.0% | |
| ! | GGTGTCATAGCGCGTGGCAA+AGG | + | chr1_1:37004388-37004407 | None:intergenic | 60.0% |
| !! | AGGGGTGCTCGGAAAAGGCA+AGG | + | chr1_1:37005760-37005779 | None:intergenic | 60.0% |
| CCGTAGGATTGGGACGGTGG+TGG | + | chr1_1:37003741-37003760 | None:intergenic | 65.0% | |
| AGGTGGCGCGCCGTAGGATT+GGG | + | chr1_1:37003751-37003770 | None:intergenic | 65.0% | |
| ! | CCGTGGGATTGAGATGGCGG+AGG | + | chr1_1:37003819-37003838 | None:intergenic | 65.0% |
| !! | GGGATGGTGGATGTGAGCCG+TGG | + | chr1_1:37003836-37003855 | None:intergenic | 65.0% |
| ! | CCGTAGGACTGAGATGGCGG+TGG | + | chr1_1:37003900-37003919 | None:intergenic | 65.0% |
| !! | AGGGTTGGCCGTAGGAGGTG+GGG | + | chr1_1:37003932-37003951 | None:intergenic | 65.0% |
| !! | GAGGGTTGGCCGTAGGAGGT+GGG | + | chr1_1:37003933-37003952 | None:intergenic | 65.0% |
| CAGCGTAAGGAGCGGAGGGT+TGG | + | chr1_1:37003947-37003966 | None:intergenic | 65.0% | |
| GAAGACTCTCACTCCGCCGG+CGG | - | chr1_1:37003990-37004009 | Msa0020970:intron | 65.0% | |
| !! | TGCATACGCCGGTGGTGGGT+AGG | + | chr1_1:37004027-37004046 | None:intergenic | 65.0% |
| GGCTTGCATACGCCGGTGGT+GGG | + | chr1_1:37004031-37004050 | None:intergenic | 65.0% | |
| ! | AACGGGCTTGCATACGCCGG+TGG | + | chr1_1:37004035-37004054 | None:intergenic | 65.0% |
| ! | GCGAACGGGCTTGCATACGC+CGG | + | chr1_1:37004038-37004057 | None:intergenic | 65.0% |
| GTGCCGGGAGGGAATGTCGA+CGG | + | chr1_1:37004071-37004090 | None:intergenic | 65.0% | |
| !! | TGCTTGGATCGGTGCCGGGA+GGG | + | chr1_1:37004082-37004101 | None:intergenic | 65.0% |
| !! | ATGCTTGGATCGGTGCCGGG+AGG | + | chr1_1:37004083-37004102 | None:intergenic | 65.0% |
| GCGCCGTAGGATTGGGACGG+TGG | + | chr1_1:37003744-37003763 | None:intergenic | 70.0% | |
| GGCGCGCCGTAGGATTGGGA+CGG | + | chr1_1:37003747-37003766 | None:intergenic | 70.0% | |
| GAGGTGGCGCGCCGTAGGAT+TGG | + | chr1_1:37003752-37003771 | None:intergenic | 70.0% | |
| GCGCCGTAGGGTTGGGATGG+TGG | + | chr1_1:37003849-37003868 | None:intergenic | 70.0% | |
| !! | AGGAGGGGCGCCGTAGGGTT+GGG | + | chr1_1:37003856-37003875 | None:intergenic | 70.0% |
| !! | GATGGAGGAGGGGCGCCGTA+GGG | + | chr1_1:37003861-37003880 | None:intergenic | 70.0% |
| !! | AGATGGAGGAGGGGCGCCGT+AGG | + | chr1_1:37003862-37003881 | None:intergenic | 70.0% |
| ! | AGATGGCGGTGGTGCGCCGT+AGG | + | chr1_1:37003889-37003908 | None:intergenic | 70.0% |
| GCACCTCCCCCCACCTCCTA+CGG | - | chr1_1:37003921-37003940 | Msa0020970:intron | 70.0% | |
| ! | GGTTGGCCGTAGGAGGTGGG+GGG | + | chr1_1:37003930-37003949 | None:intergenic | 70.0% |
| !! | GGGTTGGCCGTAGGAGGTGG+GGG | + | chr1_1:37003931-37003950 | None:intergenic | 70.0% |
| !! | GGAGGGTTGGCCGTAGGAGG+TGG | + | chr1_1:37003934-37003953 | None:intergenic | 70.0% |
| !! | AGCGGAGGGTTGGCCGTAGG+AGG | + | chr1_1:37003937-37003956 | None:intergenic | 70.0% |
| !! | AGGAGCGGAGGGTTGGCCGT+AGG | + | chr1_1:37003940-37003959 | None:intergenic | 70.0% |
| GGGGCAGCGTAAGGAGCGGA+GGG | + | chr1_1:37003951-37003970 | None:intergenic | 70.0% | |
| AGGGGCAGCGTAAGGAGCGG+AGG | + | chr1_1:37003952-37003971 | None:intergenic | 70.0% | |
| TGGCGCTGCCTACCCACCAC+CGG | - | chr1_1:37004016-37004035 | Msa0020970:intron | 70.0% | |
| GGGCTTGCATACGCCGGTGG+TGG | + | chr1_1:37004032-37004051 | None:intergenic | 70.0% | |
| GGATGGAGGTGGCGCGCCGT+AGG | + | chr1_1:37003757-37003776 | None:intergenic | 75.0% | |
| !! | GGGGCGCCGTAGGGTTGGGA+TGG | + | chr1_1:37003852-37003871 | None:intergenic | 75.0% |
| !! | GAGGAGGGGCGCCGTAGGGT+TGG | + | chr1_1:37003857-37003876 | None:intergenic | 75.0% |
| ! | GGTGGGGGGAGGTGCACCGT+AGG | + | chr1_1:37003916-37003935 | None:intergenic | 75.0% |
| TGGCCGTAGGAGGTGGGGGG+AGG | + | chr1_1:37003927-37003946 | None:intergenic | 75.0% | |
| GACTCTCACTCCGCCGGCGG+CGG | - | chr1_1:37003993-37004012 | Msa0020970:intron | 75.0% | |
| ! | TCTCACTCCGCCGGCGGCGG+TGG | - | chr1_1:37003996-37004015 | Msa0020970:intron | 80.0% |
| ! | GTAGGCAGCGCCACCGCCGC+CGG | + | chr1_1:37004009-37004028 | None:intergenic | 80.0% |
| ! | GGCAGCGCCACCGCCGCCGG+CGG | + | chr1_1:37004006-37004025 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 37003621 | 37008287 | 37003621 | ID=Msa0020970;Name=Msa0020970 |
| chr1_1 | mRNA | 37003621 | 37008287 | 37003621 | ID=Msa0020970-mRNA-1;Parent=Msa0020970;Name=Msa0020970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=66|0.66|0.5|1|1|1|4|0|330 |
| chr1_1 | exon | 37003621 | 37003725 | 37003621 | ID=Msa0020970-mRNA-1:exon:11607;Parent=Msa0020970-mRNA-1 |
| chr1_1 | exon | 37004766 | 37005035 | 37004766 | ID=Msa0020970-mRNA-1:exon:11606;Parent=Msa0020970-mRNA-1 |
| chr1_1 | exon | 37005474 | 37005520 | 37005474 | ID=Msa0020970-mRNA-1:exon:11605;Parent=Msa0020970-mRNA-1 |
| chr1_1 | exon | 37007651 | 37008287 | 37007651 | ID=Msa0020970-mRNA-1:exon:11604;Parent=Msa0020970-mRNA-1 |
| chr1_1 | five_prime_UTR | 37008222 | 37008287 | 37008222 | ID=Msa0020970-mRNA-1:five_prime_utr;Parent=Msa0020970-mRNA-1 |
| chr1_1 | CDS | 37007651 | 37008221 | 37007651 | ID=Msa0020970-mRNA-1:cds;Parent=Msa0020970-mRNA-1 |
| chr1_1 | CDS | 37005474 | 37005520 | 37005474 | ID=Msa0020970-mRNA-1:cds;Parent=Msa0020970-mRNA-1 |
| chr1_1 | CDS | 37004766 | 37005035 | 37004766 | ID=Msa0020970-mRNA-1:cds;Parent=Msa0020970-mRNA-1 |
| chr1_1 | CDS | 37003621 | 37003725 | 37003621 | ID=Msa0020970-mRNA-1:cds;Parent=Msa0020970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
