AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0020990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020990 MtrunA17_Chr1g0172721 94.975 199 10 0 1 199 1 199 2.19e-128 363
Msa0020990 MtrunA17_Chr2g0321531 56.604 53 23 0 130 182 87 139 3.76e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020990 AT3G10300.1 51.185 211 76 10 6 199 29 229 8.05e-43 144
Msa0020990 AT3G10300.3 51.691 207 81 9 6 199 29 229 5.98e-42 144
Msa0020990 AT3G10300.4 51.185 211 76 10 6 199 29 229 1.27e-41 143
Msa0020990 AT3G10300.2 51.905 210 76 10 6 199 29 229 1.37e-41 143
Msa0020990 AT3G10300.6 51.923 208 79 9 6 199 29 229 4.09e-41 143
Msa0020990 AT3G10300.5 52.709 203 71 10 6 192 29 222 5.80e-41 141
Msa0020990 AT5G04170.1 51.515 198 56 7 6 199 87 248 9.86e-38 134

Find 104 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTTCCTTTGGTGGTTTC+TGG 0.083164 1_1:+37026735 None:intergenic
AAAACCTAGTTTCACAAAAT+TGG 0.171856 1_1:+37026425 None:intergenic
GGAGGGTTGGCCGTAGGAGG+TGG 0.257632 1_1:+37026778 None:intergenic
CCGTAACTGGGAGGTTGATT+TGG 0.288039 1_1:+37027010 None:intergenic
AAGCATAGTTGCATGCTTTC+AGG 0.288562 1_1:-37026612 Msa0020990:CDS
GCCGTAGCCGTAACCGTAAC+TGG 0.323233 1_1:+37026997 None:intergenic
GCGCCGTAGGGTTGGGATGG+TGG 0.324780 1_1:+37026863 None:intergenic
TCCTTTGGTGGTTTCTGGTA+AGG 0.326406 1_1:+37026740 None:intergenic
GGGTTGGCCGTAGGAGGTGG+GGG 0.354323 1_1:+37026781 None:intergenic
CGTAACTGGGAGGTTGATTT+GGG 0.358707 1_1:+37027011 None:intergenic
AGGAGGGGCGCCGTAGGGTT+GGG 0.362027 1_1:+37026856 None:intergenic
CCTTTGGTGGTTTCTGGTAA+GGG 0.366050 1_1:+37026741 None:intergenic
TCTCACTCCGCCGGCGGCGG+TGG 0.368349 1_1:-37026713 Msa0020990:CDS
GAGGTGGCGCGCCGTAGGAT+TGG 0.404697 1_1:+37026960 None:intergenic
AGGGTTGGCCGTAGGAGGTG+GGG 0.404892 1_1:+37026780 None:intergenic
GAGGAGGGGCGCCGTAGGGT+TGG 0.408524 1_1:+37026855 None:intergenic
GACTCTCACTCCGCCGGCGG+CGG 0.409937 1_1:-37026716 Msa0020990:CDS
GCGGAGTGAGAGTCTTCCTT+TGG 0.413197 1_1:+37026725 None:intergenic
AGGTGGCGCGCCGTAGGATT+GGG 0.418487 1_1:+37026961 None:intergenic
GGCAGCGCCACCGCCGCCGG+CGG 0.431730 1_1:+37026706 None:intergenic
GGGCTTGCATACGCCGGTGG+TGG 0.433601 1_1:+37026680 None:intergenic
AACTATGCTTGGATCGGTGC+CGG 0.438940 1_1:+37026625 None:intergenic
GAGGGTTGGCCGTAGGAGGT+GGG 0.441171 1_1:+37026779 None:intergenic
AACACTAATGTCAAGAAGAT+TGG 0.446887 1_1:-37026473 Msa0020990:CDS
GTAGGCAGCGCCACCGCCGC+CGG 0.455288 1_1:+37026703 None:intergenic
GAGTGAGAGTCTTCCTTTGG+TGG 0.469738 1_1:+37026728 None:intergenic
GTGGATGTGAGCCGTGAGAT+TGG 0.469783 1_1:+37026933 None:intergenic
TGAAAGCATGCAACTATGCT+TGG 0.470186 1_1:+37026614 None:intergenic
GATGGAGGAGGGGCGCCGTA+GGG 0.474449 1_1:+37026851 None:intergenic
AGTTGCATGCTTTCAGGTGG+CGG 0.477899 1_1:-37026606 Msa0020990:CDS
CAGCGTAAGGAGCGGAGGGT+TGG 0.481863 1_1:+37026765 None:intergenic
TGCATACGCCGGTGGTGGGT+AGG 0.484911 1_1:+37026685 None:intergenic
CAACCTCCCAGTTACGGTTA+CGG 0.486274 1_1:-37027004 Msa0020990:CDS
CTCTCCCCGTTCAACATGTC+CGG 0.491811 1_1:-37027037 None:intergenic
GGCTTGCATACGCCGGTGGT+GGG 0.497047 1_1:+37026681 None:intergenic
AGCGGAGGGTTGGCCGTAGG+AGG 0.499264 1_1:+37026775 None:intergenic
GGGAGGTTGATTTGGGTAGC+CGG 0.501842 1_1:+37027018 None:intergenic
GGTTGGCCGTAGGAGGTGGG+GGG 0.503103 1_1:+37026782 None:intergenic
TTCTGGTAAGGGGCAGCGTA+AGG 0.505336 1_1:+37026752 None:intergenic
AGATGGAGGAGGGGCGCCGT+AGG 0.513785 1_1:+37026850 None:intergenic
TGGATGTGAGCCGTGAGATT+GGG 0.514086 1_1:+37026934 None:intergenic
AGGGGCAGCGTAAGGAGCGG+AGG 0.515625 1_1:+37026760 None:intergenic
AATCTTCTTGACATTAGTGT+TGG 0.520354 1_1:+37026475 None:intergenic
CTTTGGTGGTTTCTGGTAAG+GGG 0.521399 1_1:+37026742 None:intergenic
CCAAATCAACCTCCCAGTTA+CGG 0.522046 1_1:-37027010 Msa0020990:CDS
GGGGCGCCGTAGGGTTGGGA+TGG 0.523196 1_1:+37026860 None:intergenic
CCCAGTTACGGTTACGGCTA+CGG 0.528520 1_1:-37026998 Msa0020990:CDS
CCGTGGGATTGAGATGGCGG+AGG 0.531055 1_1:+37026893 None:intergenic
ACTATGCTTGGATCGGTGCC+GGG 0.531309 1_1:+37026626 None:intergenic
GGAGGGGCACCGTATGATGA+TGG 0.531589 1_1:+37026911 None:intergenic
ACGGAACTAGTGAAGCGAAC+GGG 0.538388 1_1:+37026660 None:intergenic
CCGTAGGATTGGGACGGTGG+TGG 0.539857 1_1:+37026971 None:intergenic
GGGATGGTGGATGTGAGCCG+TGG 0.542212 1_1:+37026876 None:intergenic
TGGCGCTGCCTACCCACCAC+CGG 0.543326 1_1:-37026693 Msa0020990:CDS
GGATGGAGGTGGCGCGCCGT+AGG 0.546323 1_1:+37026955 None:intergenic
CCGTAGGATTGAGATGGAGG+AGG 0.550942 1_1:+37026839 None:intergenic
CCTAGTTTCACAAAATTGGA+AGG 0.554631 1_1:+37026429 None:intergenic
AGATGGCGGTGGTGCGCCGT+AGG 0.558305 1_1:+37026823 None:intergenic
GCGCCGTAGGATTGGGACGG+TGG 0.563160 1_1:+37026968 None:intergenic
CGTGGGATTGAGATGGCGGA+GGG 0.574541 1_1:+37026894 None:intergenic
GGATGGTGGATGTGAGCCGT+GGG 0.582265 1_1:+37026877 None:intergenic
AGGAGCGGAGGGTTGGCCGT+AGG 0.584854 1_1:+37026772 None:intergenic
GGTGCGCCGTAGGATTGAGA+TGG 0.586750 1_1:+37026833 None:intergenic
GTGGCGGATCAAGATGGAAG+TGG 0.590863 1_1:-37026590 Msa0020990:CDS
CCGTGAGATTGGGATGGAGG+TGG 0.592526 1_1:+37026944 None:intergenic
CGTAGGATTGAGATGGAGGA+GGG 0.596668 1_1:+37026840 None:intergenic
GCGCCGTAGGATTGAGATGG+AGG 0.600023 1_1:+37026836 None:intergenic
CCTCCGCCATCTCAATCCCA+CGG 0.601681 1_1:-37026893 Msa0020990:CDS
CCACCACCGTCCCAATCCTA+CGG 0.602134 1_1:-37026971 Msa0020990:CDS
CCGTAGCCGTAACCGTAACT+GGG 0.603337 1_1:+37026998 None:intergenic
AACGGGCTTGCATACGCCGG+TGG 0.606292 1_1:+37026677 None:intergenic
CCTCCTCCATCTCAATCCTA+CGG 0.606864 1_1:-37026839 Msa0020990:CDS
TGCTTGGATCGGTGCCGGGA+GGG 0.607261 1_1:+37026630 None:intergenic
GGTGCACCGTAGGACTGAGA+TGG 0.609595 1_1:+37026806 None:intergenic
CATCCACCATCCCAACCCTA+CGG 0.609859 1_1:-37026866 Msa0020990:CDS
GCATGCAACTATGCTTGGAT+CGG 0.612077 1_1:+37026619 None:intergenic
CATAGTTGCATGCTTTCAGG+TGG 0.617272 1_1:-37026609 Msa0020990:CDS
TTTCAGGTGGCGGATCAAGA+TGG 0.618083 1_1:-37026596 Msa0020990:CDS
GGGGCAGCGTAAGGAGCGGA+GGG 0.618208 1_1:+37026761 None:intergenic
GTAAGGGGCAGCGTAAGGAG+CGG 0.621045 1_1:+37026757 None:intergenic
TCACATCCACCATCATCATA+CGG 0.623284 1_1:-37026920 Msa0020990:CDS
CCACCGCCATCTCAGTCCTA+CGG 0.623426 1_1:-37026812 Msa0020990:CDS
CCGTAGGACTGAGATGGCGG+TGG 0.632485 1_1:+37026812 None:intergenic
AAGGAAGACTCTCACTCCGC+CGG 0.637026 1_1:-37026722 Msa0020990:CDS
GTGCCGGGAGGGAATGTCGA+CGG 0.640255 1_1:+37026641 None:intergenic
GCACCGTAGGACTGAGATGG+CGG 0.641208 1_1:+37026809 None:intergenic
GCGAACGGGCTTGCATACGC+CGG 0.641842 1_1:+37026674 None:intergenic
CCACCTCCATCCCAATCTCA+CGG 0.643113 1_1:-37026944 Msa0020990:CDS
GGCGCGCCGTAGGATTGGGA+CGG 0.643698 1_1:+37026965 None:intergenic
CGATGATAAAGAATTGCAGA+GGG 0.644489 1_1:-37026561 Msa0020990:CDS
GGGGCACCGTATGATGATGG+TGG 0.647814 1_1:+37026914 None:intergenic
GAGCCGTGAGATTGGGATGG+AGG 0.649963 1_1:+37026941 None:intergenic
TGTGAGCCGTGGGATTGAGA+TGG 0.652224 1_1:+37026887 None:intergenic
CCCTTACCAGAAACCACCAA+AGG 0.654843 1_1:-37026741 Msa0020990:CDS
GAAGACTCTCACTCCGCCGG+CGG 0.658698 1_1:-37026719 Msa0020990:CDS
ATGCTTGGATCGGTGCCGGG+AGG 0.658862 1_1:+37026629 None:intergenic
GACGGAACTAGTGAAGCGAA+CGG 0.661804 1_1:+37026659 None:intergenic
TGTGAGCCGTGAGATTGGGA+TGG 0.661955 1_1:+37026938 None:intergenic
GAGCCGTGGGATTGAGATGG+CGG 0.678050 1_1:+37026890 None:intergenic
TCGATGATAAAGAATTGCAG+AGG 0.679963 1_1:-37026562 Msa0020990:CDS
GTTCCGTCGACATTCCCTCC+CGG 0.680369 1_1:-37026644 Msa0020990:CDS
GTGGGATTGAGATGGCGGAG+GGG 0.683956 1_1:+37026895 None:intergenic
GTAGGATTGAGATGGAGGAG+GGG 0.684619 1_1:+37026841 None:intergenic
TAGCCGTAACCGTAACTGGG+AGG 0.751687 1_1:+37027001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATCTTCTTGACATTAGTGT+TGG + chr1_1:37026986-37027005 None:intergenic 30.0%
AACACTAATGTCAAGAAGAT+TGG - chr1_1:37026985-37027004 Msa0020990:CDS 30.0%
TCGATGATAAAGAATTGCAG+AGG - chr1_1:37026896-37026915 Msa0020990:CDS 35.0%
CGATGATAAAGAATTGCAGA+GGG - chr1_1:37026897-37026916 Msa0020990:CDS 35.0%
TCACATCCACCATCATCATA+CGG - chr1_1:37026538-37026557 Msa0020990:CDS 40.0%
! TGAAAGCATGCAACTATGCT+TGG + chr1_1:37026847-37026866 None:intergenic 40.0%
AAGCATAGTTGCATGCTTTC+AGG - chr1_1:37026846-37026865 Msa0020990:CDS 40.0%
! CGTAACTGGGAGGTTGATTT+GGG + chr1_1:37026450-37026469 None:intergenic 45.0%
CCAAATCAACCTCCCAGTTA+CGG - chr1_1:37026448-37026467 Msa0020990:CDS 45.0%
!! CTTTGGTGGTTTCTGGTAAG+GGG + chr1_1:37026719-37026738 None:intergenic 45.0%
!! CCTTTGGTGGTTTCTGGTAA+GGG + chr1_1:37026720-37026739 None:intergenic 45.0%
!! TCCTTTGGTGGTTTCTGGTA+AGG + chr1_1:37026721-37026740 None:intergenic 45.0%
! AGTCTTCCTTTGGTGGTTTC+TGG + chr1_1:37026726-37026745 None:intergenic 45.0%
GCATGCAACTATGCTTGGAT+CGG + chr1_1:37026842-37026861 None:intergenic 45.0%
CATAGTTGCATGCTTTCAGG+TGG - chr1_1:37026849-37026868 Msa0020990:CDS 45.0%
! CCGTAACTGGGAGGTTGATT+TGG + chr1_1:37026451-37026470 None:intergenic 50.0%
CAACCTCCCAGTTACGGTTA+CGG - chr1_1:37026454-37026473 Msa0020990:CDS 50.0%
TGGATGTGAGCCGTGAGATT+GGG + chr1_1:37026527-37026546 None:intergenic 50.0%
GTAGGATTGAGATGGAGGAG+GGG + chr1_1:37026620-37026639 None:intergenic 50.0%
CGTAGGATTGAGATGGAGGA+GGG + chr1_1:37026621-37026640 None:intergenic 50.0%
CCTCCTCCATCTCAATCCTA+CGG - chr1_1:37026619-37026638 Msa0020990:CDS 50.0%
CCCTTACCAGAAACCACCAA+AGG - chr1_1:37026717-37026736 Msa0020990:CDS 50.0%
GAGTGAGAGTCTTCCTTTGG+TGG + chr1_1:37026733-37026752 None:intergenic 50.0%
ACGGAACTAGTGAAGCGAAC+GGG + chr1_1:37026801-37026820 None:intergenic 50.0%
GACGGAACTAGTGAAGCGAA+CGG + chr1_1:37026802-37026821 None:intergenic 50.0%
AACTATGCTTGGATCGGTGC+CGG + chr1_1:37026836-37026855 None:intergenic 50.0%
! AGTTGCATGCTTTCAGGTGG+CGG - chr1_1:37026852-37026871 Msa0020990:CDS 50.0%
!! TTTCAGGTGGCGGATCAAGA+TGG - chr1_1:37026862-37026881 Msa0020990:CDS 50.0%
!! GGGAGGTTGATTTGGGTAGC+CGG + chr1_1:37026443-37026462 None:intergenic 55.0%
TAGCCGTAACCGTAACTGGG+AGG + chr1_1:37026460-37026479 None:intergenic 55.0%
CCGTAGCCGTAACCGTAACT+GGG + chr1_1:37026463-37026482 None:intergenic 55.0%
CCCAGTTACGGTTACGGCTA+CGG - chr1_1:37026460-37026479 Msa0020990:CDS 55.0%
CCACCTCCATCCCAATCTCA+CGG - chr1_1:37026514-37026533 Msa0020990:CDS 55.0%
TGTGAGCCGTGAGATTGGGA+TGG + chr1_1:37026523-37026542 None:intergenic 55.0%
GTGGATGTGAGCCGTGAGAT+TGG + chr1_1:37026528-37026547 None:intergenic 55.0%
TGTGAGCCGTGGGATTGAGA+TGG + chr1_1:37026574-37026593 None:intergenic 55.0%
CATCCACCATCCCAACCCTA+CGG - chr1_1:37026592-37026611 Msa0020990:CDS 55.0%
CCGTAGGATTGAGATGGAGG+AGG + chr1_1:37026622-37026641 None:intergenic 55.0%
TTCTGGTAAGGGGCAGCGTA+AGG + chr1_1:37026709-37026728 None:intergenic 55.0%
GCGGAGTGAGAGTCTTCCTT+TGG + chr1_1:37026736-37026755 None:intergenic 55.0%
AAGGAAGACTCTCACTCCGC+CGG - chr1_1:37026736-37026755 Msa0020990:CDS 55.0%
! ACTATGCTTGGATCGGTGCC+GGG + chr1_1:37026835-37026854 None:intergenic 55.0%
!! GTGGCGGATCAAGATGGAAG+TGG - chr1_1:37026868-37026887 Msa0020990:CDS 55.0%
GCCGTAGCCGTAACCGTAAC+TGG + chr1_1:37026464-37026483 None:intergenic 60.0%
CCACCACCGTCCCAATCCTA+CGG - chr1_1:37026487-37026506 Msa0020990:CDS 60.0%
CCGTGAGATTGGGATGGAGG+TGG + chr1_1:37026517-37026536 None:intergenic 60.0%
GAGCCGTGAGATTGGGATGG+AGG + chr1_1:37026520-37026539 None:intergenic 60.0%
!! GGGGCACCGTATGATGATGG+TGG + chr1_1:37026547-37026566 None:intergenic 60.0%
!! GGAGGGGCACCGTATGATGA+TGG + chr1_1:37026550-37026569 None:intergenic 60.0%
!! GTGGGATTGAGATGGCGGAG+GGG + chr1_1:37026566-37026585 None:intergenic 60.0%
!! CGTGGGATTGAGATGGCGGA+GGG + chr1_1:37026567-37026586 None:intergenic 60.0%
CCTCCGCCATCTCAATCCCA+CGG - chr1_1:37026565-37026584 Msa0020990:CDS 60.0%
GAGCCGTGGGATTGAGATGG+CGG + chr1_1:37026571-37026590 None:intergenic 60.0%
!! GGATGGTGGATGTGAGCCGT+GGG + chr1_1:37026584-37026603 None:intergenic 60.0%
GCGCCGTAGGATTGAGATGG+AGG + chr1_1:37026625-37026644 None:intergenic 60.0%
GGTGCGCCGTAGGATTGAGA+TGG + chr1_1:37026628-37026647 None:intergenic 60.0%
CCACCGCCATCTCAGTCCTA+CGG - chr1_1:37026646-37026665 Msa0020990:CDS 60.0%
GCACCGTAGGACTGAGATGG+CGG + chr1_1:37026652-37026671 None:intergenic 60.0%
GGTGCACCGTAGGACTGAGA+TGG + chr1_1:37026655-37026674 None:intergenic 60.0%
GTAAGGGGCAGCGTAAGGAG+CGG + chr1_1:37026704-37026723 None:intergenic 60.0%
GTTCCGTCGACATTCCCTCC+CGG - chr1_1:37026814-37026833 Msa0020990:CDS 60.0%
CCGTAGGATTGGGACGGTGG+TGG + chr1_1:37026490-37026509 None:intergenic 65.0%
AGGTGGCGCGCCGTAGGATT+GGG + chr1_1:37026500-37026519 None:intergenic 65.0%
! CCGTGGGATTGAGATGGCGG+AGG + chr1_1:37026568-37026587 None:intergenic 65.0%
!! GGGATGGTGGATGTGAGCCG+TGG + chr1_1:37026585-37026604 None:intergenic 65.0%
! CCGTAGGACTGAGATGGCGG+TGG + chr1_1:37026649-37026668 None:intergenic 65.0%
!! AGGGTTGGCCGTAGGAGGTG+GGG + chr1_1:37026681-37026700 None:intergenic 65.0%
!! GAGGGTTGGCCGTAGGAGGT+GGG + chr1_1:37026682-37026701 None:intergenic 65.0%
CAGCGTAAGGAGCGGAGGGT+TGG + chr1_1:37026696-37026715 None:intergenic 65.0%
GAAGACTCTCACTCCGCCGG+CGG - chr1_1:37026739-37026758 Msa0020990:CDS 65.0%
!! TGCATACGCCGGTGGTGGGT+AGG + chr1_1:37026776-37026795 None:intergenic 65.0%
GGCTTGCATACGCCGGTGGT+GGG + chr1_1:37026780-37026799 None:intergenic 65.0%
! AACGGGCTTGCATACGCCGG+TGG + chr1_1:37026784-37026803 None:intergenic 65.0%
! GCGAACGGGCTTGCATACGC+CGG + chr1_1:37026787-37026806 None:intergenic 65.0%
GTGCCGGGAGGGAATGTCGA+CGG + chr1_1:37026820-37026839 None:intergenic 65.0%
!! TGCTTGGATCGGTGCCGGGA+GGG + chr1_1:37026831-37026850 None:intergenic 65.0%
!! ATGCTTGGATCGGTGCCGGG+AGG + chr1_1:37026832-37026851 None:intergenic 65.0%
GCGCCGTAGGATTGGGACGG+TGG + chr1_1:37026493-37026512 None:intergenic 70.0%
GGCGCGCCGTAGGATTGGGA+CGG + chr1_1:37026496-37026515 None:intergenic 70.0%
GAGGTGGCGCGCCGTAGGAT+TGG + chr1_1:37026501-37026520 None:intergenic 70.0%
GCGCCGTAGGGTTGGGATGG+TGG + chr1_1:37026598-37026617 None:intergenic 70.0%
!! AGGAGGGGCGCCGTAGGGTT+GGG + chr1_1:37026605-37026624 None:intergenic 70.0%
!! GATGGAGGAGGGGCGCCGTA+GGG + chr1_1:37026610-37026629 None:intergenic 70.0%
!! AGATGGAGGAGGGGCGCCGT+AGG + chr1_1:37026611-37026630 None:intergenic 70.0%
! AGATGGCGGTGGTGCGCCGT+AGG + chr1_1:37026638-37026657 None:intergenic 70.0%
GCACCTCCCCCCACCTCCTA+CGG - chr1_1:37026670-37026689 Msa0020990:CDS 70.0%
! GGTTGGCCGTAGGAGGTGGG+GGG + chr1_1:37026679-37026698 None:intergenic 70.0%
!! GGGTTGGCCGTAGGAGGTGG+GGG + chr1_1:37026680-37026699 None:intergenic 70.0%
!! GGAGGGTTGGCCGTAGGAGG+TGG + chr1_1:37026683-37026702 None:intergenic 70.0%
!! AGCGGAGGGTTGGCCGTAGG+AGG + chr1_1:37026686-37026705 None:intergenic 70.0%
!! AGGAGCGGAGGGTTGGCCGT+AGG + chr1_1:37026689-37026708 None:intergenic 70.0%
GGGGCAGCGTAAGGAGCGGA+GGG + chr1_1:37026700-37026719 None:intergenic 70.0%
AGGGGCAGCGTAAGGAGCGG+AGG + chr1_1:37026701-37026720 None:intergenic 70.0%
TGGCGCTGCCTACCCACCAC+CGG - chr1_1:37026765-37026784 Msa0020990:CDS 70.0%
GGGCTTGCATACGCCGGTGG+TGG + chr1_1:37026781-37026800 None:intergenic 70.0%
GGATGGAGGTGGCGCGCCGT+AGG + chr1_1:37026506-37026525 None:intergenic 75.0%
!! GGGGCGCCGTAGGGTTGGGA+TGG + chr1_1:37026601-37026620 None:intergenic 75.0%
!! GAGGAGGGGCGCCGTAGGGT+TGG + chr1_1:37026606-37026625 None:intergenic 75.0%
! GGTGGGGGGAGGTGCACCGT+AGG + chr1_1:37026665-37026684 None:intergenic 75.0%
TGGCCGTAGGAGGTGGGGGG+AGG + chr1_1:37026676-37026695 None:intergenic 75.0%
GACTCTCACTCCGCCGGCGG+CGG - chr1_1:37026742-37026761 Msa0020990:CDS 75.0%
! TCTCACTCCGCCGGCGGCGG+TGG - chr1_1:37026745-37026764 Msa0020990:CDS 80.0%
! GTAGGCAGCGCCACCGCCGC+CGG + chr1_1:37026758-37026777 None:intergenic 80.0%
! GGCAGCGCCACCGCCGCCGG+CGG + chr1_1:37026755-37026774 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 37026436 37027044 37026436 ID=Msa0020990;Name=Msa0020990
chr1_1 mRNA 37026436 37027044 37026436 ID=Msa0020990-mRNA-1;Parent=Msa0020990;Name=Msa0020990-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|202
chr1_1 exon 37026436 37027044 37026436 ID=Msa0020990-mRNA-1:exon:11630;Parent=Msa0020990-mRNA-1
chr1_1 CDS 37026436 37027044 37026436 ID=Msa0020990-mRNA-1:cds;Parent=Msa0020990-mRNA-1
Gene Sequence

>Msa0020990

ATGTCCGGCTACCCAAATCAACCTCCCAGTTACGGTTACGGCTACGGCACACCACCACCGTCCCAATCCTACGGCGCGCCACCTCCATCCCAATCTCACGGCTCACATCCACCATCATCATACGGTGCCCCTCCGCCATCTCAATCCCACGGCTCACATCCACCATCCCAACCCTACGGCGCCCCTCCTCCATCTCAATCCTACGGCGCACCACCGCCATCTCAGTCCTACGGTGCACCTCCCCCCACCTCCTACGGCCAACCCTCCGCTCCTTACGCTGCCCCTTACCAGAAACCACCAAAGGAAGACTCTCACTCCGCCGGCGGCGGTGGCGCTGCCTACCCACCACCGGCGTATGCAAGCCCGTTCGCTTCACTAGTTCCGTCGACATTCCCTCCCGGCACCGATCCAAGCATAGTTGCATGCTTTCAGGTGGCGGATCAAGATGGAAGTGGTTTGATCGATGATAAAGAATTGCAGAGGGCTTTGTCTTCTTACAATCAGAGCTTCAGTTTGAGAACTGTTCATCTTCTCATGTATCACTTCACCAACACTAATGTCAAGAAGATTGGTACGTACTTTTTCTCTTCATTCCTTCCAATTTTGTGA
Protein sequence

>Msa0020990

MSGYPNQPPSYGYGYGTPPPSQSYGAPPPSQSHGSHPPSSYGAPPPSQSHGSHPPSQPYGAPPPSQSYGAPPPSQSYGAPPPTSYGQPSAPYAAPYQKPPKEDSHSAGGGGAAYPPPAYASPFASLVPSTFPPGTDPSIVACFQVADQDGSGLIDDKELQRALSSYNQSFSLRTVHLLMYHFTNTNVKKIGTYFFSSFLPIL*