AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021820 MtrunA17_Chr2g0325841 51.376 654 269 10 136 751 494 1136 0.0 686
Msa0021820 MtrunA17_Chr4g0010671 51.852 459 176 9 134 566 4 443 1.38e-143 434
Msa0021820 MtrunA17_Chr4g0010671 50.000 90 36 2 366 455 450 530 1.78e-16 83.6
Msa0021820 MtrunA17_Chr1g0153901 32.673 404 211 8 148 499 16 410 2.76e-45 170
Msa0021820 MtrunA17_Chr1g0153901 32.593 135 84 2 587 714 405 539 1.71e-17 86.7
Msa0021820 MtrunA17_Chr6g0469071 31.643 414 220 8 137 499 8 409 2.90e-45 172
Msa0021820 MtrunA17_Chr6g0469071 31.579 171 91 4 587 750 404 555 9.04e-19 90.9
Msa0021820 MtrunA17_Chr6g0466851 24.444 450 283 20 148 572 34 451 6.98e-18 88.6
Msa0021820 MtrunA17_Chr5g0434431 37.391 115 66 2 640 750 1 113 2.53e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 161 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAACATGTTGGGAAATT+TGG 0.085053 1_1:+39586633 None:intergenic
GACTCTATTCACCCTCTTAT+TGG 0.157530 1_1:+39588589 None:intergenic
TGCACCTCTAACTCTCTTTC+TGG 0.177352 1_1:+39588343 None:intergenic
GCCTCACGATTCTACGAATA+TGG 0.197476 1_1:-39586013 Msa0021820:CDS
CCTCCCAACAAGAGATATTA+TGG 0.231757 1_1:-39586063 Msa0021820:CDS
ACATATAATTCACACTCTTC+TGG 0.254643 1_1:+39586531 None:intergenic
TTTGGTCCACTTTCTCATTA+TGG 0.256019 1_1:-39586780 Msa0021820:CDS
GCGGGAGGATCCTTACTTTC+TGG 0.262037 1_1:-39587830 Msa0021820:intron
TATAACAGGAGAAAAGAAAT+AGG 0.271660 1_1:-39587731 Msa0021820:intron
ACAAGGAGATATTTAAATAA+TGG 0.276500 1_1:-39587928 Msa0021820:CDS
GTGGGAATTAGGCAATATTT+TGG 0.277082 1_1:-39586798 Msa0021820:CDS
TCTGCGTCTAGTTTCTAATA+AGG 0.282863 1_1:-39586307 Msa0021820:intron
TAGAAGCAAAGTCAGTATTT+TGG 0.299421 1_1:-39588192 Msa0021820:CDS
GAGAACATGTTGGGAAATTT+GGG 0.303343 1_1:+39586634 None:intergenic
ATCCACTTCTCATGGCGTTT+TGG 0.303707 1_1:+39587561 None:intergenic
TTTGAAATATCATGAGTATC+AGG 0.307585 1_1:+39588012 None:intergenic
TATTATTGTAGTGCTATAGA+AGG 0.310711 1_1:-39585293 Msa0021820:intron
CATAATCAGCTGTTAGAAAA+TGG 0.314358 1_1:-39586450 Msa0021820:CDS
TGGGTGGAGGTGTGGGAATT+AGG 0.321825 1_1:-39586809 Msa0021820:CDS
CATTGAAAAGTTGATGTTAA+GGG 0.338244 1_1:-39586141 Msa0021820:CDS
ACATCCTGTGAAGTTCGATT+TGG 0.355404 1_1:-39586105 Msa0021820:CDS
CAAGGAGATATTTAAATAAT+GGG 0.358220 1_1:-39587927 Msa0021820:CDS
GCGGGATTTATCATCTATTC+CGG 0.359802 1_1:-39586673 Msa0021820:CDS
GGAACGCCTCTGTACTCAAT+TGG 0.367411 1_1:-39585732 Msa0021820:CDS
ATAACAGGAGAAAAGAAATA+GGG 0.368760 1_1:-39587730 Msa0021820:intron
TATTTAAATATCTCCTTGTC+AGG 0.372950 1_1:+39587932 None:intergenic
TTCTAACAGCTGATTATGTA+TGG 0.377840 1_1:+39586455 None:intergenic
AAGAGGGTGAATAGACAAAT+TGG 0.379699 1_1:-39588728 Msa0021820:CDS
CCTACCAGAAAGAGAGTTAG+AGG 0.384109 1_1:-39588347 Msa0021820:CDS
GGAGGACCTTTCTCAGTTTG+TGG 0.384548 1_1:+39588392 None:intergenic
ATTTGTTTGCTATTGAAAAC+AGG 0.387510 1_1:+39586744 None:intergenic
CCCTCAACACTTTCATTCAA+TGG 0.391935 1_1:-39586341 Msa0021820:CDS
CGAACACGTCCAGGGTGTTC+AGG 0.394765 1_1:+39586837 None:intergenic
ACATTGAAAAGTTGATGTTA+AGG 0.398182 1_1:-39586142 Msa0021820:CDS
GTCCATTGATCGAAGTCAAT+CGG 0.398422 1_1:+39588272 None:intergenic
CATATAATTCACACTCTTCT+GGG 0.400238 1_1:+39586532 None:intergenic
TGTCACCTCATCTGTGGGCA+TGG 0.403135 1_1:+39586377 None:intergenic
CAGATCTTACTAAGGAGATC+AGG 0.404791 1_1:-39586707 Msa0021820:CDS
GTCACCTCATCTGTGGGCAT+GGG 0.412439 1_1:+39586378 None:intergenic
ACGCCATGAGAAGTGGATAA+AGG 0.438334 1_1:-39587556 Msa0021820:CDS
GTCCAACAAACCAGAAAGTA+AGG 0.443460 1_1:+39587820 None:intergenic
GCTATCCTCGAACATCTTTG+CGG 0.444082 1_1:+39585628 None:intergenic
AACACACTCGTGAGTGCATC+AGG 0.445829 1_1:-39588419 Msa0021820:CDS
AACACACTCGTGAGTGCATC+AGG 0.445829 1_1:-39588503 Msa0021820:CDS
TGAGCGTTCATCTCACTTTG+TGG 0.448663 1_1:+39588545 None:intergenic
TTGAGTGACAAATCTCCTCT+TGG 0.450159 1_1:-39587901 Msa0021820:CDS
GCATCAGGTCCTCCACAATC+AGG 0.451852 1_1:-39588488 Msa0021820:CDS
TGAGCATTCTTATCGCTTTG+TGG 0.461839 1_1:+39588761 None:intergenic
TTTCAAAATTGAAAGACAAA+TGG 0.462506 1_1:-39587996 Msa0021820:CDS
CTTGCAGGTATATCGGTACT+AGG 0.462675 1_1:+39586612 None:intergenic
ATATGCAAATGTATATAAGT+TGG 0.463537 1_1:-39586484 Msa0021820:CDS
CTATATAACACAGGAACAAT+GGG 0.465835 1_1:-39588040 Msa0021820:intron
CTTTCCAATGTAGTCGCCAT+TGG 0.471523 1_1:-39585486 Msa0021820:intron
TATGCAAATGTATATAAGTT+GGG 0.472118 1_1:-39586483 Msa0021820:CDS
GCTCCATAATATCTCTTGTT+GGG 0.472661 1_1:+39586060 None:intergenic
CAAGATCTGGGAAGATATCA+TGG 0.475188 1_1:-39588132 Msa0021820:intron
CGTGCTGTGGGTGGAGGTGT+GGG 0.475834 1_1:-39586816 Msa0021820:CDS
TCGTGCTGTGGGTGGAGGTG+TGG 0.477255 1_1:-39586817 Msa0021820:CDS
CCCACAGCACGAACACGTCC+AGG 0.478170 1_1:+39586828 None:intergenic
ACAAGGACGTAAAGATATCT+TGG 0.478352 1_1:-39586877 Msa0021820:CDS
GAACGCCTCTGTACTCAATT+GGG 0.481117 1_1:-39585731 Msa0021820:CDS
TCCCGATTGACTTCGATCAA+TGG 0.481216 1_1:-39588274 Msa0021820:CDS
TCATCATTATCCTCTGGTAT+AGG 0.483406 1_1:+39586561 None:intergenic
ATAAGCAGCCTACCAATAAG+AGG 0.483898 1_1:-39588601 Msa0021820:CDS
AAGAGGGTGAATAGAGTCAT+TGG 0.484806 1_1:-39588584 Msa0021820:CDS
CTATTCACCCTCTTATTGGT+AGG 0.485345 1_1:+39588593 None:intergenic
CCCTGGACGTGTTCGTGCTG+TGG 0.488299 1_1:-39586829 Msa0021820:CDS
CCTATGCGTGTGAACGTTGG+AGG 0.488622 1_1:-39587969 Msa0021820:CDS
GTCAGAAGAAACACGTTGTA+TGG 0.489764 1_1:-39587505 Msa0021820:CDS
TTATTCTTCTCTTTGTGTTG+AGG 0.490705 1_1:+39588620 None:intergenic
CGTGTTCGTGCTGTGGGTGG+AGG 0.494163 1_1:-39586822 Msa0021820:CDS
CGGTACTAGGAGAACATGTT+GGG 0.495155 1_1:+39586625 None:intergenic
CCTCTAACTCTCTTTCTGGT+AGG 0.501052 1_1:+39588347 None:intergenic
AACATATAAATTTATTGATG+CGG 0.502252 1_1:-39587878 Msa0021820:CDS
TCCATTGATCGAAGTCAATC+GGG 0.502439 1_1:+39588273 None:intergenic
ATGTCCTCATCATTATCCTC+TGG 0.503062 1_1:+39586555 None:intergenic
GATATACCTGCAAGCACAAA+AGG 0.504357 1_1:-39586603 Msa0021820:CDS
ACCTTTGTCACCTCATCTGT+GGG 0.504424 1_1:+39586372 None:intergenic
TGGTGTCAGAAAGGCGAGAA+AGG 0.505190 1_1:-39585255 Msa0021820:CDS
ATGCTCAGCCTGCCGAAAAG+AGG 0.506766 1_1:-39588745 Msa0021820:CDS
AGCTCCATAATATCTCTTGT+TGG 0.508698 1_1:+39586059 None:intergenic
CACCAAAACGCCATGAGAAG+TGG 0.513550 1_1:-39587563 Msa0021820:CDS
GATATCTTGGCGGAAGCGAT+CGG 0.514136 1_1:-39586864 Msa0021820:CDS
AAGGCACGACAAAAGTCATC+AGG 0.514998 1_1:-39587537 Msa0021820:CDS
ATTATTGTAGTGCTATAGAA+GGG 0.515001 1_1:-39585292 Msa0021820:intron
TCGGTACTAGGAGAACATGT+TGG 0.515851 1_1:+39586624 None:intergenic
TGAGCGTTCATCTCAGTTTG+TGG 0.515910 1_1:+39588461 None:intergenic
TCATCCAAATCGAACTTCAC+AGG 0.517008 1_1:+39586101 None:intergenic
AAGATGATCTTCCATCCAAA+AGG 0.520107 1_1:-39586184 Msa0021820:CDS
CCTCACGATTCTACGAATAT+GGG 0.520232 1_1:-39586012 Msa0021820:CDS
TCACCTCATCTGTGGGCATG+GGG 0.520539 1_1:+39586379 None:intergenic
TATTGATGCGGAAACATGGC+AGG 0.523083 1_1:-39587866 Msa0021820:CDS
AAGAGGGTGAGCAAAGTCAT+TGG 0.523725 1_1:-39588656 Msa0021820:CDS
GTTTGTGGAGGACCTGATTG+TGG 0.525071 1_1:+39588476 None:intergenic
ACTGACTTTGCTTCTAGCAA+TGG 0.525241 1_1:+39588199 None:intergenic
AACAGCTGATTATGTATGGT+TGG 0.526059 1_1:+39586459 None:intergenic
TATGACCGCAAAGATGTTCG+AGG 0.528313 1_1:-39585633 Msa0021820:CDS
AACCTTTGTCACCTCATCTG+TGG 0.529223 1_1:+39586371 None:intergenic
ATTGAAAACAGGTGAGGAAG+AGG 0.530801 1_1:+39586755 None:intergenic
GCATTCTTCTCGCTTTGTTG+AGG 0.531057 1_1:+39588692 None:intergenic
GCTATATAACACAGGAACAA+TGG 0.531580 1_1:-39588041 Msa0021820:intron
CATGAAAGCAGATCTTACTA+AGG 0.535133 1_1:-39586715 Msa0021820:CDS
CCTGGACGTGTTCGTGCTGT+GGG 0.536349 1_1:-39586828 Msa0021820:CDS
GTGCCTTTATCCACTTCTCA+TGG 0.537475 1_1:+39587553 None:intergenic
GGTCCTCCACAAACTGAGAA+AGG 0.538285 1_1:-39588398 Msa0021820:CDS
CAAGTTGAGTGGTGTCAGAA+AGG 0.541303 1_1:-39585264 Msa0021820:CDS
TGCTCAGCCTGCCGAAAAGA+GGG 0.544188 1_1:-39588744 Msa0021820:CDS
CCATTGAATGAAAGTGTTGA+GGG 0.546713 1_1:+39586341 None:intergenic
TTGGGAAATAGTGATGTGTA+TGG 0.549222 1_1:-39585713 Msa0021820:CDS
GATCAGGGATCAAGTGATGC+GGG 0.557898 1_1:-39586691 Msa0021820:CDS
GGACCTTTCTCAGTTTGTGG+AGG 0.560528 1_1:+39588395 None:intergenic
GCTTCCAACCCATCGAACAT+AGG 0.564671 1_1:+39585422 None:intergenic
TAACAGGAGAAAAGAAATAG+GGG 0.567601 1_1:-39587729 Msa0021820:intron
ACAAAGTGAGATGAACGCTC+AGG 0.570123 1_1:-39588543 Msa0021820:CDS
ACAGATGAGGTGACAAAGGT+TGG 0.570661 1_1:-39586369 Msa0021820:CDS
AGTTAGAGGTGCAACGCGAA+TGG 0.572960 1_1:-39588333 Msa0021820:CDS
GAGGCACCATAATGAGAAAG+TGG 0.573619 1_1:+39586774 None:intergenic
GGGAAATGTTGAGAGAAAGC+CGG 0.574648 1_1:+39586654 None:intergenic
AGATCTTACTAAGGAGATCA+GGG 0.579172 1_1:-39586706 Msa0021820:CDS
GGACGTGTTCGTGCTGTGGG+TGG 0.582261 1_1:-39586825 Msa0021820:CDS
GCCATTGAATGAAAGTGTTG+AGG 0.582439 1_1:+39586340 None:intergenic
AATTTATTGATGCGGAAACA+TGG 0.585376 1_1:-39587870 Msa0021820:CDS
AAGATATCTTTACGTCCTTG+TGG 0.594684 1_1:+39586879 None:intergenic
CAAGGACTCTTTGTTCCACA+AGG 0.595486 1_1:-39586894 Msa0021820:CDS
TCAGCTGTTAGAAAATGGTA+TGG 0.595575 1_1:-39586445 Msa0021820:CDS
GCGTTCATCTCACTTTGTGG+AGG 0.602673 1_1:+39588548 None:intergenic
GGCAGGAGTTTATTAAGACG+CGG 0.602815 1_1:-39587849 Msa0021820:CDS
AGTCCCCATGCCCACAGATG+AGG 0.605255 1_1:-39586382 Msa0021820:CDS
GCAGGAGTTTATTAAGACGC+GGG 0.605793 1_1:-39587848 Msa0021820:CDS
CAATAATAAGCAATTGCCAA+TGG 0.608219 1_1:+39585470 None:intergenic
CTATGCGTGTGAACGTTGGA+GGG 0.609237 1_1:-39587968 Msa0021820:CDS
GCATTCTTATCGCTTTGTGG+AGG 0.610687 1_1:+39588764 None:intergenic
CTCCACGAGACAAGTTGTGA+GGG 0.615575 1_1:+39587679 None:intergenic
GCCCACAGATGAGGTGACAA+AGG 0.615741 1_1:-39586373 Msa0021820:CDS
CCTCCAACGTTCACACGCAT+AGG 0.617116 1_1:+39587969 None:intergenic
CATTTAAAACAAACCTGACA+AGG 0.619779 1_1:-39587945 Msa0021820:CDS
AGAAAATGGTATGGTGAGGG+TGG 0.621632 1_1:-39586436 Msa0021820:CDS
GCGTTCATCTCAGTTTGTGG+AGG 0.628888 1_1:+39588464 None:intergenic
ATAAATTTATATGTTCCAAG+AGG 0.629667 1_1:+39587886 None:intergenic
ATCGGACAACCTGAACACCC+TGG 0.630196 1_1:-39586846 Msa0021820:CDS
TTTGCTATTGAAAACAGGTG+AGG 0.632953 1_1:+39586749 None:intergenic
CACGATTCTACGAATATGGG+TGG 0.637016 1_1:-39586009 Msa0021820:CDS
GAAGGGTATAACAAGTTGAG+TGG 0.638120 1_1:-39585275 Msa0021820:CDS
AGATCAGGGATCAAGTGATG+CGG 0.639256 1_1:-39586692 Msa0021820:CDS
CCATAATATCTCTTGTTGGG+AGG 0.644455 1_1:+39586063 None:intergenic
GAAAGGCGAGAAAGGCAACA+TGG 0.644876 1_1:-39585247 Msa0021820:CDS
TCATTATCCTCTGGTATAGG+CGG 0.645594 1_1:+39586564 None:intergenic
TAAGCAGCCTACCAATAAGA+GGG 0.651339 1_1:-39588600 Msa0021820:CDS
CCTCCACGAGACAAGTTGTG+AGG 0.664113 1_1:+39587678 None:intergenic
GGAGTTTATTAAGACGCGGG+AGG 0.664322 1_1:-39587845 Msa0021820:CDS
AACAGGAGAAAAGAAATAGG+GGG 0.665524 1_1:-39587728 Msa0021820:intron
TATCCTATGCGTGTGAACGT+TGG 0.669950 1_1:-39587972 Msa0021820:CDS
TGCAACACCGCCTATACCAG+AGG 0.670942 1_1:-39586571 Msa0021820:CDS
CCCATATTCGTAGAATCGTG+AGG 0.675861 1_1:+39586012 None:intergenic
GTTAGAAAATGGTATGGTGA+GGG 0.676123 1_1:-39586439 Msa0021820:CDS
AGGACGTAAAGATATCTTGG+CGG 0.678116 1_1:-39586874 Msa0021820:CDS
TATACCAGAGGATAATGATG+AGG 0.687519 1_1:-39586559 Msa0021820:CDS
CCACAGCACGAACACGTCCA+GGG 0.688896 1_1:+39586829 None:intergenic
TATTTCCCAATTGAGTACAG+AGG 0.690904 1_1:+39585726 None:intergenic
TGTTAGAAAATGGTATGGTG+AGG 0.703544 1_1:-39586440 Msa0021820:CDS
TGTGGAGGACCTGATTGTGG+AGG 0.704125 1_1:+39588479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATCTTAAATTGTTT+AGG - chr1_1:39587783-39587802 Msa0021820:intron 10.0%
!!! GAATTGTTTTTTAATATTTT+AGG - chr1_1:39588248-39588267 Msa0021820:CDS 10.0%
!!! TTTTTAATATTTTAGGTATA+TGG - chr1_1:39588255-39588274 Msa0021820:CDS 10.0%
!! AACATATAAATTTATTGATG+CGG - chr1_1:39586130-39586149 Msa0021820:CDS 15.0%
!!! CATTTTACTTACAATTTTAT+CGG + chr1_1:39586529-39586548 None:intergenic 15.0%
!! GTTAGATTATTAATTGAATT+TGG - chr1_1:39586600-39586619 Msa0021820:CDS 15.0%
!!! AATTAAGTTTGTTAATTGAA+TGG - chr1_1:39586681-39586700 Msa0021820:CDS 15.0%
!! ATTAGTCAACATAATTAAAT+GGG + chr1_1:39587764-39587783 None:intergenic 15.0%
!! TATTAGTCAACATAATTAAA+TGG + chr1_1:39587765-39587784 None:intergenic 15.0%
!!! TTTTCTTTAACTTTTCATAT+AGG + chr1_1:39588113-39588132 None:intergenic 15.0%
!!! AAAAAGATTTGTTAACTTTA+GGG + chr1_1:39588498-39588517 None:intergenic 15.0%
!!! AAAAAAGATTTGTTAACTTT+AGG + chr1_1:39588499-39588518 None:intergenic 15.0%
!! AGTATATATATTTAACTAAG+TGG - chr1_1:39588643-39588662 Msa0021820:CDS 15.0%
!!! TTTTTGCTTAAATGTTTGAA+TGG - chr1_1:39585703-39585722 Msa0021820:CDS 20.0%
!! AAAAAAATTCAAAAGTCATG+TGG - chr1_1:39585783-39585802 Msa0021820:intron 20.0%
!! AAAAAATTCAAAAGTCATGT+GGG - chr1_1:39585784-39585803 Msa0021820:intron 20.0%
!! TTTCAAAATTGAAAGACAAA+TGG - chr1_1:39586012-39586031 Msa0021820:CDS 20.0%
!! ACAAGGAGATATTTAAATAA+TGG - chr1_1:39586080-39586099 Msa0021820:CDS 20.0%
!! CAAGGAGATATTTAAATAAT+GGG - chr1_1:39586081-39586100 Msa0021820:CDS 20.0%
!! ATAAATTTATATGTTCCAAG+AGG + chr1_1:39586125-39586144 None:intergenic 20.0%
!! AAATAACACACAACAATTAA+CGG + chr1_1:39586258-39586277 None:intergenic 20.0%
!!! AGACTATAAAATTTGAAACA+TGG - chr1_1:39586578-39586597 Msa0021820:CDS 20.0%
!! GTTAGATAGTTAATTGAATT+TGG - chr1_1:39586622-39586641 Msa0021820:CDS 20.0%
!! CTAGTAATTTACTTATTTAC+AGG + chr1_1:39586772-39586791 None:intergenic 20.0%
!!! TTGAATATTTTTATGTTGGT+AGG - chr1_1:39587068-39587087 Msa0021820:intron 20.0%
!! ATATGCAAATGTATATAAGT+TGG - chr1_1:39587524-39587543 Msa0021820:CDS 20.0%
!! TATGCAAATGTATATAAGTT+GGG - chr1_1:39587525-39587544 Msa0021820:CDS 20.0%
!!! TTTTCAATGTAAGATTTTTC+AGG + chr1_1:39587856-39587875 None:intergenic 20.0%
!!! TTTTTTCTGTTTTCTCCTAA+AGG + chr1_1:39585769-39585788 None:intergenic 25.0%
!! TTTTATCTGCTATATAACAC+AGG - chr1_1:39585959-39585978 Msa0021820:intron 25.0%
!! TTTGAAATATCATGAGTATC+AGG + chr1_1:39585999-39586018 None:intergenic 25.0%
! TATTTAAATATCTCCTTGTC+AGG + chr1_1:39586079-39586098 None:intergenic 25.0%
!!! TGTTGTGTGTTATTTATAAC+AGG - chr1_1:39586263-39586282 Msa0021820:intron 25.0%
! TATAACAGGAGAAAAGAAAT+AGG - chr1_1:39586277-39586296 Msa0021820:intron 25.0%
! ATAACAGGAGAAAAGAAATA+GGG - chr1_1:39586278-39586297 Msa0021820:intron 25.0%
! ACATTAGAAACAATGTTGTA+TGG - chr1_1:39586880-39586899 Msa0021820:CDS 25.0%
! GTTTCTATATTATGGTTCTT+TGG - chr1_1:39586957-39586976 Msa0021820:intron 25.0%
! CAACATAAAAATATTCAAGC+AGG + chr1_1:39587066-39587085 None:intergenic 25.0%
!!! CTGCTTGAATATTTTTATGT+TGG - chr1_1:39587064-39587083 Msa0021820:intron 25.0%
! GTTGTTGAAAAAACAAAACA+AGG - chr1_1:39587096-39587115 Msa0021820:intron 25.0%
!!! ATTTGTTTGCTATTGAAAAC+AGG + chr1_1:39587267-39587286 None:intergenic 25.0%
!!! ACATTGAAAAGTTGATGTTA+AGG - chr1_1:39587866-39587885 Msa0021820:CDS 25.0%
!!! CATTGAAAAGTTGATGTTAA+GGG - chr1_1:39587867-39587886 Msa0021820:CDS 25.0%
!! TTAATTTAAAGCACAGACAA+AGG + chr1_1:39588053-39588072 None:intergenic 25.0%
! TCAAAATTTGAACATGTACA+AGG + chr1_1:39588230-39588249 None:intergenic 25.0%
!!! TACACTTACTTTTTCAGATA+AGG + chr1_1:39588424-39588443 None:intergenic 25.0%
!!! AAAACGACATTTTGTTTTTC+TGG + chr1_1:39588566-39588585 None:intergenic 25.0%
! TATTATTGTAGTGCTATAGA+AGG - chr1_1:39588715-39588734 Msa0021820:CDS 25.0%
! ATTATTGTAGTGCTATAGAA+GGG - chr1_1:39588716-39588735 Msa0021820:CDS 25.0%
TTATTCTTCTCTTTGTGTTG+AGG + chr1_1:39585391-39585410 None:intergenic 30.0%
! TGAGTAATTTTCTCAGTTTG+TGG + chr1_1:39585640-39585659 None:intergenic 30.0%
! TAGAAGCAAAGTCAGTATTT+TGG - chr1_1:39585816-39585835 Msa0021820:intron 30.0%
AGACTGTTAAAAACAAGATC+TGG - chr1_1:39585863-39585882 Msa0021820:intron 30.0%
GACTGTTAAAAACAAGATCT+GGG - chr1_1:39585864-39585883 Msa0021820:intron 30.0%
CAGATAAAAGAGTTAGTGTA+TGG + chr1_1:39585948-39585967 None:intergenic 30.0%
CTATATAACACAGGAACAAT+GGG - chr1_1:39585968-39585987 Msa0021820:intron 30.0%
! CATTTAAAACAAACCTGACA+AGG - chr1_1:39586063-39586082 Msa0021820:CDS 30.0%
AATTTATTGATGCGGAAACA+TGG - chr1_1:39586138-39586157 Msa0021820:CDS 30.0%
TAACAGGAGAAAAGAAATAG+GGG - chr1_1:39586279-39586298 Msa0021820:intron 30.0%
TACTTAATTAAAGCCACTGA+TGG - chr1_1:39586796-39586815 Msa0021820:CDS 30.0%
CTATGTGTAAGTTCAATACT+GGG + chr1_1:39586915-39586934 None:intergenic 30.0%
ACTATGTGTAAGTTCAATAC+TGG + chr1_1:39586916-39586935 None:intergenic 30.0%
!! AAGCCACTGTTTCTATATTA+TGG - chr1_1:39586949-39586968 Msa0021820:intron 30.0%
GAACCATAATATAGAAACAG+TGG + chr1_1:39586955-39586974 None:intergenic 30.0%
CATATAATTCACACTCTTCT+GGG + chr1_1:39587479-39587498 None:intergenic 30.0%
ACATATAATTCACACTCTTC+TGG + chr1_1:39587480-39587499 None:intergenic 30.0%
TTCTAACAGCTGATTATGTA+TGG + chr1_1:39587556-39587575 None:intergenic 30.0%
CATAATCAGCTGTTAGAAAA+TGG - chr1_1:39587558-39587577 Msa0021820:CDS 30.0%
TGTCTTTATCTATTTGCACT+TGG - chr1_1:39587737-39587756 Msa0021820:intron 30.0%
GTCTTTATCTATTTGCACTT+GGG - chr1_1:39587738-39587757 Msa0021820:intron 30.0%
! ACAGACAAAGGCATAAATAA+GGG + chr1_1:39588041-39588060 None:intergenic 30.0%
CATTCTGAATTGTTTATAGC+AGG - chr1_1:39588155-39588174 Msa0021820:CDS 30.0%
CAATAATAAGCAATTGCCAA+TGG + chr1_1:39588541-39588560 None:intergenic 30.0%
! TTGTCTATTCACCCTCTTTT+CGG + chr1_1:39585278-39585297 None:intergenic 35.0%
AAGAGGGTGAATAGACAAAT+TGG - chr1_1:39585280-39585299 Msa0021820:CDS 35.0%
!!! GAGTGTGTTGACTCTATTTT+CGG + chr1_1:39585494-39585513 None:intergenic 35.0%
!!! GAGTGTGTTGACTCTATTTT+CGG + chr1_1:39585494-39585513 None:intergenic 35.0%
! GTAATTTTCTCAGTTTGTGG+AGG + chr1_1:39585637-39585656 None:intergenic 35.0%
! GTTTTCTCCTAAAGGCTTTT+TGG + chr1_1:39585761-39585780 None:intergenic 35.0%
!! AAGCAAAGTCAGTATTTTGG+TGG - chr1_1:39585819-39585838 Msa0021820:intron 35.0%
!!! TCAGTATTTTGGTGGATCAT+TGG - chr1_1:39585827-39585846 Msa0021820:intron 35.0%
!!! CAGTATTTTGGTGGATCATT+GGG - chr1_1:39585828-39585847 Msa0021820:intron 35.0%
GCTATATAACACAGGAACAA+TGG - chr1_1:39585967-39585986 Msa0021820:intron 35.0%
!! ATCCTTACTTTCTGGTTTGT+TGG - chr1_1:39586186-39586205 Msa0021820:CDS 35.0%
AACAGGAGAAAAGAAATAGG+GGG - chr1_1:39586280-39586299 Msa0021820:intron 35.0%
! AAATAGGGGGAAATTGATTC+AGG - chr1_1:39586293-39586312 Msa0021820:intron 35.0%
!! CTACAATACAGAAGCATTCA+TGG + chr1_1:39586718-39586737 None:intergenic 35.0%
AGTTCAATACTGGGATTGAT+TGG + chr1_1:39586906-39586925 None:intergenic 35.0%
GCTGCTACAATTACAAACAT+TGG - chr1_1:39587027-39587046 Msa0021820:intron 35.0%
AAGATATCTTTACGTCCTTG+TGG + chr1_1:39587132-39587151 None:intergenic 35.0%
ACAAGGACGTAAAGATATCT+TGG - chr1_1:39587131-39587150 Msa0021820:intron 35.0%
! GTGGGAATTAGGCAATATTT+TGG - chr1_1:39587210-39587229 Msa0021820:intron 35.0%
TTTGGTCCACTTTCTCATTA+TGG - chr1_1:39587228-39587247 Msa0021820:intron 35.0%
!! TTTGCTATTGAAAACAGGTG+AGG + chr1_1:39587262-39587281 None:intergenic 35.0%
CATGAAAGCAGATCTTACTA+AGG - chr1_1:39587293-39587312 Msa0021820:intron 35.0%
AGATCTTACTAAGGAGATCA+GGG - chr1_1:39587302-39587321 Msa0021820:intron 35.0%
GAGAACATGTTGGGAAATTT+GGG + chr1_1:39587377-39587396 None:intergenic 35.0%
! TTTTGTGCTTGCAGGTATAT+CGG + chr1_1:39587406-39587425 None:intergenic 35.0%
TCATCATTATCCTCTGGTAT+AGG + chr1_1:39587450-39587469 None:intergenic 35.0%
TATACCAGAGGATAATGATG+AGG - chr1_1:39587449-39587468 Msa0021820:intron 35.0%
AACAGCTGATTATGTATGGT+TGG + chr1_1:39587552-39587571 None:intergenic 35.0%
TCAGCTGTTAGAAAATGGTA+TGG - chr1_1:39587563-39587582 Msa0021820:CDS 35.0%
TGTTAGAAAATGGTATGGTG+AGG - chr1_1:39587568-39587587 Msa0021820:CDS 35.0%
GTTAGAAAATGGTATGGTGA+GGG - chr1_1:39587569-39587588 Msa0021820:CDS 35.0%
!! CCATTGAATGAAAGTGTTGA+GGG + chr1_1:39587670-39587689 None:intergenic 35.0%
! TCTGCGTCTAGTTTCTAATA+AGG - chr1_1:39587701-39587720 Msa0021820:CDS 35.0%
AAGATGATCTTCCATCCAAA+AGG - chr1_1:39587824-39587843 Msa0021820:intron 35.0%
!!! TTTTTCAGGTTCTGACCTTT+TGG + chr1_1:39587842-39587861 None:intergenic 35.0%
GCTCCATAATATCTCTTGTT+GGG + chr1_1:39587951-39587970 None:intergenic 35.0%
AGCTCCATAATATCTCTTGT+TGG + chr1_1:39587952-39587971 None:intergenic 35.0%
! CACAGACAAAGGCATAAATA+AGG + chr1_1:39588042-39588061 None:intergenic 35.0%
CAACAAACAAACAAACAGCA+AGG + chr1_1:39588207-39588226 None:intergenic 35.0%
TATTTCCCAATTGAGTACAG+AGG + chr1_1:39588285-39588304 None:intergenic 35.0%
TTGGGAAATAGTGATGTGTA+TGG - chr1_1:39588295-39588314 Msa0021820:CDS 35.0%
!! TGATCCATTTTTCATTCACG+CGG - chr1_1:39588324-39588343 Msa0021820:CDS 35.0%
! TTTTCCGCGTGAATGAAAAA+TGG + chr1_1:39588331-39588350 None:intergenic 35.0%
TGAGCATTCTTATCGCTTTG+TGG + chr1_1:39585250-39585269 None:intergenic 40.0%
ATAAGCAGCCTACCAATAAG+AGG - chr1_1:39585407-39585426 Msa0021820:CDS 40.0%
TAAGCAGCCTACCAATAAGA+GGG - chr1_1:39585408-39585427 Msa0021820:CDS 40.0%
CTATTCACCCTCTTATTGGT+AGG + chr1_1:39585418-39585437 None:intergenic 40.0%
GACTCTATTCACCCTCTTAT+TGG + chr1_1:39585422-39585441 None:intergenic 40.0%
AAGAGGGTGAATAGAGTCAT+TGG - chr1_1:39585424-39585443 Msa0021820:CDS 40.0%
!!! GTGTTGACTCTATTTTCGGT+AGG + chr1_1:39585490-39585509 None:intergenic 40.0%
TCCATTGATCGAAGTCAATC+GGG + chr1_1:39585738-39585757 None:intergenic 40.0%
GTCCATTGATCGAAGTCAAT+CGG + chr1_1:39585739-39585758 None:intergenic 40.0%
CAATGGACCAAAAAGCCTTT+AGG - chr1_1:39585751-39585770 Msa0021820:intron 40.0%
! ACTGACTTTGCTTCTAGCAA+TGG + chr1_1:39585812-39585831 None:intergenic 40.0%
CAAGATCTGGGAAGATATCA+TGG - chr1_1:39585876-39585895 Msa0021820:intron 40.0%
TTGAGTGACAAATCTCCTCT+TGG - chr1_1:39586107-39586126 Msa0021820:CDS 40.0%
GTCCAACAAACCAGAAAGTA+AGG + chr1_1:39586191-39586210 None:intergenic 40.0%
GTCAGAAGAAACACGTTGTA+TGG - chr1_1:39586503-39586522 Msa0021820:CDS 40.0%
AGCAGCACAAACTAAAACAG+TGG + chr1_1:39587013-39587032 None:intergenic 40.0%
AGGACGTAAAGATATCTTGG+CGG - chr1_1:39587134-39587153 Msa0021820:intron 40.0%
ATTGAAAACAGGTGAGGAAG+AGG + chr1_1:39587256-39587275 None:intergenic 40.0%
CAGATCTTACTAAGGAGATC+AGG - chr1_1:39587301-39587320 Msa0021820:intron 40.0%
GCGGGATTTATCATCTATTC+CGG - chr1_1:39587335-39587354 Msa0021820:intron 40.0%
GGAGAACATGTTGGGAAATT+TGG + chr1_1:39587378-39587397 None:intergenic 40.0%
GATATACCTGCAAGCACAAA+AGG - chr1_1:39587405-39587424 Msa0021820:intron 40.0%
TCATTATCCTCTGGTATAGG+CGG + chr1_1:39587447-39587466 None:intergenic 40.0%
ATGTCCTCATCATTATCCTC+TGG + chr1_1:39587456-39587475 None:intergenic 40.0%
CCCTCAACACTTTCATTCAA+TGG - chr1_1:39587667-39587686 Msa0021820:intron 40.0%
!! GCCATTGAATGAAAGTGTTG+AGG + chr1_1:39587671-39587690 None:intergenic 40.0%
! ACTAGACGCAGAAGTCTTTT+TGG + chr1_1:39587693-39587712 None:intergenic 40.0%
ACATCCTGTGAAGTTCGATT+TGG - chr1_1:39587903-39587922 Msa0021820:CDS 40.0%
TCATCCAAATCGAACTTCAC+AGG + chr1_1:39587910-39587929 None:intergenic 40.0%
CCATAATATCTCTTGTTGGG+AGG + chr1_1:39587948-39587967 None:intergenic 40.0%
CCTCCCAACAAGAGATATTA+TGG - chr1_1:39587945-39587964 Msa0021820:CDS 40.0%
CCTCACGATTCTACGAATAT+GGG - chr1_1:39587996-39588015 Msa0021820:CDS 40.0%
!!! TGTCGTTTTCCTATGTTCGA+TGG - chr1_1:39588577-39588596 Msa0021820:CDS 40.0%
!! GTCGTTTTCCTATGTTCGAT+GGG - chr1_1:39588578-39588597 Msa0021820:CDS 40.0%
! TTTTCCTATGTTCGATGGGT+TGG - chr1_1:39588582-39588601 Msa0021820:CDS 40.0%
! GAAGGGTATAACAAGTTGAG+TGG - chr1_1:39588733-39588752 Msa0021820:CDS 40.0%
GCATTCTTATCGCTTTGTGG+AGG + chr1_1:39585247-39585266 None:intergenic 45.0%
! GCATTCTTCTCGCTTTGTTG+AGG + chr1_1:39585319-39585338 None:intergenic 45.0%
ATGCTCAACCTGCCAAAAAG+AGG - chr1_1:39585335-39585354 Msa0021820:intron 45.0%
TGCTCAACCTGCCAAAAAGA+GGG - chr1_1:39585336-39585355 Msa0021820:intron 45.0%
! GACTTTGCTCACCCTCTTTT+TGG + chr1_1:39585350-39585369 None:intergenic 45.0%
AAGAGGGTGAGCAAAGTCAT+TGG - chr1_1:39585352-39585371 Msa0021820:intron 45.0%
TGAGCGTTCATCTCACTTTG+TGG + chr1_1:39585466-39585485 None:intergenic 45.0%
ACAAAGTGAGATGAACGCTC+AGG - chr1_1:39585465-39585484 Msa0021820:CDS 45.0%
TGAGCGTTCATCTCAGTTTG+TGG + chr1_1:39585550-39585569 None:intergenic 45.0%
! CCTCTAACTCTCTTTCTGGT+AGG + chr1_1:39585664-39585683 None:intergenic 45.0%
CCTACCAGAAAGAGAGTTAG+AGG - chr1_1:39585661-39585680 Msa0021820:CDS 45.0%
TGCACCTCTAACTCTCTTTC+TGG + chr1_1:39585668-39585687 None:intergenic 45.0%
! TCCCGATTGACTTCGATCAA+TGG - chr1_1:39585734-39585753 Msa0021820:CDS 45.0%
TATCCTATGCGTGTGAACGT+TGG - chr1_1:39586036-39586055 Msa0021820:CDS 45.0%
TATTGATGCGGAAACATGGC+AGG - chr1_1:39586142-39586161 Msa0021820:CDS 45.0%
GGCAGGAGTTTATTAAGACG+CGG - chr1_1:39586159-39586178 Msa0021820:CDS 45.0%
GCAGGAGTTTATTAAGACGC+GGG - chr1_1:39586160-39586179 Msa0021820:CDS 45.0%
!! ACTTCTCATGGCGTTTTGGT+GGG + chr1_1:39586446-39586465 None:intergenic 45.0%
! ATCCACTTCTCATGGCGTTT+TGG + chr1_1:39586450-39586469 None:intergenic 45.0%
ACGCCATGAGAAGTGGATAA+AGG - chr1_1:39586452-39586471 Msa0021820:CDS 45.0%
GTGCCTTTATCCACTTCTCA+TGG + chr1_1:39586458-39586477 None:intergenic 45.0%
AAGGCACGACAAAAGTCATC+AGG - chr1_1:39586471-39586490 Msa0021820:CDS 45.0%
TGTGTACATCTCACCATCAG+TGG + chr1_1:39586812-39586831 None:intergenic 45.0%
CAAGGACTCTTTGTTCCACA+AGG - chr1_1:39587114-39587133 Msa0021820:intron 45.0%
! GAGGCACCATAATGAGAAAG+TGG + chr1_1:39587237-39587256 None:intergenic 45.0%
AGATCAGGGATCAAGTGATG+CGG - chr1_1:39587316-39587335 Msa0021820:intron 45.0%
GGGAAATGTTGAGAGAAAGC+CGG + chr1_1:39587357-39587376 None:intergenic 45.0%
CGGTACTAGGAGAACATGTT+GGG + chr1_1:39587386-39587405 None:intergenic 45.0%
TCGGTACTAGGAGAACATGT+TGG + chr1_1:39587387-39587406 None:intergenic 45.0%
CTTGCAGGTATATCGGTACT+AGG + chr1_1:39587399-39587418 None:intergenic 45.0%
! CAACTACCTTTTGTGCTTGC+AGG + chr1_1:39587414-39587433 None:intergenic 45.0%
AGAAAATGGTATGGTGAGGG+TGG - chr1_1:39587572-39587591 Msa0021820:CDS 45.0%
ACCTTTGTCACCTCATCTGT+GGG + chr1_1:39587639-39587658 None:intergenic 45.0%
AACCTTTGTCACCTCATCTG+TGG + chr1_1:39587640-39587659 None:intergenic 45.0%
ACAGATGAGGTGACAAAGGT+TGG - chr1_1:39587639-39587658 Msa0021820:intron 45.0%
!! TCAGGTTCTGACCTTTTGGA+TGG + chr1_1:39587838-39587857 None:intergenic 45.0%
GCCTCACGATTCTACGAATA+TGG - chr1_1:39587995-39588014 Msa0021820:CDS 45.0%
CCCATATTCGTAGAATCGTG+AGG + chr1_1:39587999-39588018 None:intergenic 45.0%
CACGATTCTACGAATATGGG+TGG - chr1_1:39587999-39588018 Msa0021820:CDS 45.0%
GAACGCCTCTGTACTCAATT+GGG - chr1_1:39588277-39588296 Msa0021820:CDS 45.0%
TATGACCGCAAAGATGTTCG+AGG - chr1_1:39588375-39588394 Msa0021820:CDS 45.0%
GCTATCCTCGAACATCTTTG+CGG + chr1_1:39588383-39588402 None:intergenic 45.0%
CTTTCCAATGTAGTCGCCAT+TGG - chr1_1:39588522-39588541 Msa0021820:CDS 45.0%
ATTGCCAATGGCGACTACAT+TGG + chr1_1:39588529-39588548 None:intergenic 45.0%
! CAAGTTGAGTGGTGTCAGAA+AGG - chr1_1:39588744-39588763 Msa0021820:CDS 45.0%
! CTATTCACCCTCTTTTCGGC+AGG + chr1_1:39585274-39585293 None:intergenic 50.0%
!! TTGCTCACCCTCTTTTTGGC+AGG + chr1_1:39585346-39585365 None:intergenic 50.0%
GCGTTCATCTCACTTTGTGG+AGG + chr1_1:39585463-39585482 None:intergenic 50.0%
AACACACTCGTGAGTGCATC+AGG - chr1_1:39585505-39585524 Msa0021820:intron 50.0%
GTTTGTGGAGGACCTGATTG+TGG + chr1_1:39585535-39585554 None:intergenic 50.0%
GCGTTCATCTCAGTTTGTGG+AGG + chr1_1:39585547-39585566 None:intergenic 50.0%
AACACACTCGTGAGTGCATC+AGG - chr1_1:39585505-39585524 Msa0021820:intron 50.0%
GGTCCTCCACAAACTGAGAA+AGG - chr1_1:39585610-39585629 Msa0021820:CDS 50.0%
GGACCTTTCTCAGTTTGTGG+AGG + chr1_1:39585616-39585635 None:intergenic 50.0%
GGAGGACCTTTCTCAGTTTG+TGG + chr1_1:39585619-39585638 None:intergenic 50.0%
! AGTTAGAGGTGCAACGCGAA+TGG - chr1_1:39585675-39585694 Msa0021820:CDS 50.0%
CTATGCGTGTGAACGTTGGA+GGG - chr1_1:39586040-39586059 Msa0021820:CDS 50.0%
GGAGTTTATTAAGACGCGGG+AGG - chr1_1:39586163-39586182 Msa0021820:CDS 50.0%
CTCCACGAGACAAGTTGTGA+GGG + chr1_1:39586332-39586351 None:intergenic 50.0%
!! CTTCTCATGGCGTTTTGGTG+GGG + chr1_1:39586445-39586464 None:intergenic 50.0%
! CACTTCTCATGGCGTTTTGG+TGG + chr1_1:39586447-39586466 None:intergenic 50.0%
CACCAAAACGCCATGAGAAG+TGG - chr1_1:39586445-39586464 Msa0021820:CDS 50.0%
GATATCTTGGCGGAAGCGAT+CGG - chr1_1:39587144-39587163 Msa0021820:intron 50.0%
GATCAGGGATCAAGTGATGC+GGG - chr1_1:39587317-39587336 Msa0021820:intron 50.0%
GGAACGCCTCTGTACTCAAT+TGG - chr1_1:39588276-39588295 Msa0021820:CDS 50.0%
GCTTCCAACCCATCGAACAT+AGG + chr1_1:39588589-39588608 None:intergenic 50.0%
! TGGTGTCAGAAAGGCGAGAA+AGG - chr1_1:39588753-39588772 Msa0021820:CDS 50.0%
GAAAGGCGAGAAAGGCAACA+TGG - chr1_1:39588761-39588780 Msa0021820:CDS 50.0%
ATGCTCAGCCTGCCGAAAAG+AGG - chr1_1:39585263-39585282 Msa0021820:CDS 55.0%
TGCTCAGCCTGCCGAAAAGA+GGG - chr1_1:39585264-39585283 Msa0021820:CDS 55.0%
GCATCAGGTCCTCCACAATC+AGG - chr1_1:39585520-39585539 Msa0021820:intron 55.0%
TGTGGAGGACCTGATTGTGG+AGG + chr1_1:39585532-39585551 None:intergenic 55.0%
CCTCCAACGTTCACACGCAT+AGG + chr1_1:39586042-39586061 None:intergenic 55.0%
CCTATGCGTGTGAACGTTGG+AGG - chr1_1:39586039-39586058 Msa0021820:CDS 55.0%
GCGGGAGGATCCTTACTTTC+TGG - chr1_1:39586178-39586197 Msa0021820:CDS 55.0%
TGCCCTCACAACTTGTCTCG+TGG - chr1_1:39586327-39586346 Msa0021820:CDS 55.0%
CCTCCACGAGACAAGTTGTG+AGG + chr1_1:39586333-39586352 None:intergenic 55.0%
CCTCACAACTTGTCTCGTGG+AGG - chr1_1:39586330-39586349 Msa0021820:CDS 55.0%
!! TCATGGCGTTTTGGTGGGGA+TGG + chr1_1:39586441-39586460 None:intergenic 55.0%
ATCGGACAACCTGAACACCC+TGG - chr1_1:39587162-39587181 Msa0021820:intron 55.0%
! TGGGTGGAGGTGTGGGAATT+AGG - chr1_1:39587199-39587218 Msa0021820:intron 55.0%
TGCAACACCGCCTATACCAG+AGG - chr1_1:39587437-39587456 Msa0021820:intron 55.0%
TCACCTCATCTGTGGGCATG+GGG + chr1_1:39587632-39587651 None:intergenic 55.0%
GTCACCTCATCTGTGGGCAT+GGG + chr1_1:39587633-39587652 None:intergenic 55.0%
TGTCACCTCATCTGTGGGCA+TGG + chr1_1:39587634-39587653 None:intergenic 55.0%
GCCCACAGATGAGGTGACAA+AGG - chr1_1:39587635-39587654 Msa0021820:intron 55.0%
!! TGGCGTTTTGGTGGGGATGG+AGG + chr1_1:39586438-39586457 None:intergenic 60.0%
! CGAACACGTCCAGGGTGTTC+AGG + chr1_1:39587174-39587193 None:intergenic 60.0%
CCACAGCACGAACACGTCCA+GGG + chr1_1:39587182-39587201 None:intergenic 60.0%
CCTGGACGTGTTCGTGCTGT+GGG - chr1_1:39587180-39587199 Msa0021820:intron 60.0%
AGTCCCCATGCCCACAGATG+AGG - chr1_1:39587626-39587645 Msa0021820:intron 60.0%
CCCTGGACGTGTTCGTGCTG+TGG - chr1_1:39587179-39587198 Msa0021820:intron 65.0%
CCCACAGCACGAACACGTCC+AGG + chr1_1:39587183-39587202 None:intergenic 65.0%
GGACGTGTTCGTGCTGTGGG+TGG - chr1_1:39587183-39587202 Msa0021820:intron 65.0%
CGTGTTCGTGCTGTGGGTGG+AGG - chr1_1:39587186-39587205 Msa0021820:intron 65.0%
TCGTGCTGTGGGTGGAGGTG+TGG - chr1_1:39587191-39587210 Msa0021820:intron 65.0%
! CGTGCTGTGGGTGGAGGTGT+GGG - chr1_1:39587192-39587211 Msa0021820:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 39585226 39588804 39585226 ID=Msa0021820;Name=Msa0021820
chr1_1 mRNA 39585226 39588804 39585226 ID=Msa0021820-mRNA-1;Parent=Msa0021820;Name=Msa0021820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.77|1|1|9|0|753
chr1_1 exon 39588133 39588804 39588133 ID=Msa0021820-mRNA-1:exon:12091;Parent=Msa0021820-mRNA-1
chr1_1 exon 39587831 39588049 39587831 ID=Msa0021820-mRNA-1:exon:12090;Parent=Msa0021820-mRNA-1
chr1_1 exon 39587685 39587745 39587685 ID=Msa0021820-mRNA-1:exon:12089;Parent=Msa0021820-mRNA-1
chr1_1 exon 39587494 39587603 39587494 ID=Msa0021820-mRNA-1:exon:12088;Parent=Msa0021820-mRNA-1
chr1_1 exon 39586308 39586940 39586308 ID=Msa0021820-mRNA-1:exon:12087;Parent=Msa0021820-mRNA-1
chr1_1 exon 39586008 39586225 39586008 ID=Msa0021820-mRNA-1:exon:12086;Parent=Msa0021820-mRNA-1
chr1_1 exon 39585596 39585760 39585596 ID=Msa0021820-mRNA-1:exon:12085;Parent=Msa0021820-mRNA-1
chr1_1 exon 39585391 39585495 39585391 ID=Msa0021820-mRNA-1:exon:12084;Parent=Msa0021820-mRNA-1
chr1_1 exon 39585226 39585304 39585226 ID=Msa0021820-mRNA-1:exon:12083;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39588133 39588804 39588133 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39587831 39588049 39587831 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39587685 39587745 39587685 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39587494 39587603 39587494 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39586308 39586940 39586308 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39586008 39586225 39586008 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39585596 39585760 39585596 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39585391 39585495 39585391 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
chr1_1 CDS 39585226 39585304 39585226 ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1
Gene Sequence

>Msa0021820

ATGGGTGATACATCAGCTCCTCCACAAAGCGATAAGAATGCTCAGCCTGCCGAAAAGAGGGTGAATAGACAAATTGGCGATCAATCAGCTCCTCAACAAAGCGAGAAGAATGCTCAACCTGCCAAAAAGAGGGTGAGCAAAGTCATTGGTAATTCATCAGCTCCTCAACACAAAGAGAAGAATAAGCAGCCTACCAATAAGAGGGTGAATAGAGTCATTGGTAATTCATCTGCTCCTCCACAAAGTGAGATGAACGCTCAGGCTACCGAAAATAGAGTCAACACACTCGTGAGTGCATCAGGTCCTCCACAATCAGGTCCTCCACAAACTGAGATGAACGCTCAGCCTACCGAAAATAGAGTCAACACACTCGTGAGTGCATCAGGTCCTCCACAAACTGAGAAAGGTCCTCCACAAACTGAGAAAATTACTCAGCCTACCAGAAAGAGAGTTAGAGGTGCAACGCGAATGGCACATTTTTTGCTTAAATGTTTGAATGGTGAAAAGATCCCGATTGACTTCGATCAATGGACCAAAAAGCCTTTAGGAGAAAACAGAAAAAAATTCAAAAGTCATGTGGGATCCATTGCTAGAAGCAAAGTCAGTATTTTGGTGGATCATTGGGATCTTGTAAGCGAGACTGTTAAAAACAAGATCTGGGAAGATATCATGGAACAATGGGATATTCCTGATACTCATGATATTTCAAAATTGAAAGACAAATGGCTATCCTATGCGTGTGAACGTTGGAGGGCATTTAAAACAAACCTGACAAGGAGATATTTAAATAATGGGAAATTGAGTGACAAATCTCCTCTTGGAACATATAAATTTATTGATGCGGAAACATGGCAGGAGTTTATTAAGACGCGGGAGGATCCTTACTTTCTGGAGAAAAGAAATAGGGGGAAATTGATTCAGGCTCATAATAGATGCCCTCACAACTTGTCTCTAGCTGCACCTCCATCCCCACCAAAACGCCATGAGAAGTGGATAAAGGCACGACAAAAGTCATCAGGAGAGTACATGTCAGAAGAAACACGTTGTATGGCCGATAAAATTGATTCTGTTGTTGAAAAAACAAAACAAGGACTCTTTGTTCCACAAGGACGTAAAGATATCTTGGCGGAAGCGATCGGACAACCTGAACACCCTGGACGTGTTCGTGCTGTGGGTGGAGGTGTGGGAATTAGGCAATATTTTGGTCCACTTTCTCATTATGGTGCCTCTTCCTCACCTGTTTTCAATAGCAAACAAATAGAGAGCATGAAAGCAGATCTTACTAAGGAGATCAGGGATCAAGTGATGCGGGATTTATCATCTATTCCGGCTTTCTCTCAACATTTCCCAAATTTCCCAACATGTTCTCCTAGTACCGATATACCTGCAAGCACAAAAGGTAGTTGTTCTGCAACACCGCCTATACCAGAGGATAATGATGAGGACATCCCAGAAGAGTGTGAATTATATGTTGATAATAAACAACACATAGTAGCATATGCAAATGTATATAAGTTGGGACCAACCATACATAATCAGCTGTTAGAAAATGGTATGGTGAGGGTGGCAGTAACTAAAGTGTTAGATTCTAATGCTCAAGTCCCCATGCCCACAGATGAGGTGACAAAGGTTGGTGACGCCCTCAACACTTTCATTCAATGGCCAAAAAGACTTCTGCGTCTAGTTTCTAATAAGGATGTTAAAGAAACTGCAAAAGATGATCTTCCATCCAAAAGGTCAGAACCTGAAAAATCTTACATTGAAAAGTTGATGTTAAGGGTATTGAATCTAAAACATCCTGTGAAGTTCGATTTGGATGAGAAAAAGTCTTTTTACCTCCCAACAAGAGATATTATGGAGCTGTGTCTAAAGACAGAAGAATTATGCCTCACGATTCTACGAATATGGGTGGTGTATATGGAACGCCTCTGTACTCAATTGGGAAATAGTGATGTGTATGGTTTCGTTGATCCATTTTTCATTCACGCGGAAAATGACGAAGAAAGTTCTCAGTCTCATATGACCGCAAAGATGTTCGAGGATAGCAAAGCTTGTTATTTTGCACCTTATCTGAAAAATCGCCATTGGCAATTGCTTATTATTGAACCAGAAAAACAAAATGTCGTTTTCCTATGTTCGATGGGTTGGAAGCTAGATAAAAATCTTGTGCAAATTGTTAATTCTGCTATAGAAGGGTATAACAAGTTGAGTGGTGTCAGAAAGGCGAGAAAGGCAACATGGCAGATTCCCACAGTAAGTTAA

Protein sequence

>Msa0021820

MGDTSAPPQSDKNAQPAEKRVNRQIGDQSAPQQSEKNAQPAKKRVSKVIGNSSAPQHKEKNKQPTNKRVNRVIGNSSAPPQSEMNAQATENRVNTLVSASGPPQSGPPQTEMNAQPTENRVNTLVSASGPPQTEKGPPQTEKITQPTRKRVRGATRMAHFLLKCLNGEKIPIDFDQWTKKPLGENRKKFKSHVGSIARSKVSILVDHWDLVSETVKNKIWEDIMEQWDIPDTHDISKLKDKWLSYACERWRAFKTNLTRRYLNNGKLSDKSPLGTYKFIDAETWQEFIKTREDPYFLEKRNRGKLIQAHNRCPHNLSLAAPPSPPKRHEKWIKARQKSSGEYMSEETRCMADKIDSVVEKTKQGLFVPQGRKDILAEAIGQPEHPGRVRAVGGGVGIRQYFGPLSHYGASSSPVFNSKQIESMKADLTKEIRDQVMRDLSSIPAFSQHFPNFPTCSPSTDIPASTKGSCSATPPIPEDNDEDIPEECELYVDNKQHIVAYANVYKLGPTIHNQLLENGMVRVAVTKVLDSNAQVPMPTDEVTKVGDALNTFIQWPKRLLRLVSNKDVKETAKDDLPSKRSEPEKSYIEKLMLRVLNLKHPVKFDLDEKKSFYLPTRDIMELCLKTEELCLTILRIWVVYMERLCTQLGNSDVYGFVDPFFIHAENDEESSQSHMTAKMFEDSKACYFAPYLKNRHWQLLIIEPEKQNVVFLCSMGWKLDKNLVQIVNSAIEGYNKLSGVRKARKATWQIPTVS*