Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021820 | Msa0117050 | 0.822127 | 2.797449e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021820 | MtrunA17_Chr2g0325841 | 51.376 | 654 | 269 | 10 | 136 | 751 | 494 | 1136 | 0.0 | 686 |
| Msa0021820 | MtrunA17_Chr4g0010671 | 51.852 | 459 | 176 | 9 | 134 | 566 | 4 | 443 | 1.38e-143 | 434 |
| Msa0021820 | MtrunA17_Chr4g0010671 | 50.000 | 90 | 36 | 2 | 366 | 455 | 450 | 530 | 1.78e-16 | 83.6 |
| Msa0021820 | MtrunA17_Chr1g0153901 | 32.673 | 404 | 211 | 8 | 148 | 499 | 16 | 410 | 2.76e-45 | 170 |
| Msa0021820 | MtrunA17_Chr1g0153901 | 32.593 | 135 | 84 | 2 | 587 | 714 | 405 | 539 | 1.71e-17 | 86.7 |
| Msa0021820 | MtrunA17_Chr6g0469071 | 31.643 | 414 | 220 | 8 | 137 | 499 | 8 | 409 | 2.90e-45 | 172 |
| Msa0021820 | MtrunA17_Chr6g0469071 | 31.579 | 171 | 91 | 4 | 587 | 750 | 404 | 555 | 9.04e-19 | 90.9 |
| Msa0021820 | MtrunA17_Chr6g0466851 | 24.444 | 450 | 283 | 20 | 148 | 572 | 34 | 451 | 6.98e-18 | 88.6 |
| Msa0021820 | MtrunA17_Chr5g0434431 | 37.391 | 115 | 66 | 2 | 640 | 750 | 1 | 113 | 2.53e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 161 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAACATGTTGGGAAATT+TGG | 0.085053 | 1_1:+39586633 | None:intergenic |
| GACTCTATTCACCCTCTTAT+TGG | 0.157530 | 1_1:+39588589 | None:intergenic |
| TGCACCTCTAACTCTCTTTC+TGG | 0.177352 | 1_1:+39588343 | None:intergenic |
| GCCTCACGATTCTACGAATA+TGG | 0.197476 | 1_1:-39586013 | Msa0021820:CDS |
| CCTCCCAACAAGAGATATTA+TGG | 0.231757 | 1_1:-39586063 | Msa0021820:CDS |
| ACATATAATTCACACTCTTC+TGG | 0.254643 | 1_1:+39586531 | None:intergenic |
| TTTGGTCCACTTTCTCATTA+TGG | 0.256019 | 1_1:-39586780 | Msa0021820:CDS |
| GCGGGAGGATCCTTACTTTC+TGG | 0.262037 | 1_1:-39587830 | Msa0021820:intron |
| TATAACAGGAGAAAAGAAAT+AGG | 0.271660 | 1_1:-39587731 | Msa0021820:intron |
| ACAAGGAGATATTTAAATAA+TGG | 0.276500 | 1_1:-39587928 | Msa0021820:CDS |
| GTGGGAATTAGGCAATATTT+TGG | 0.277082 | 1_1:-39586798 | Msa0021820:CDS |
| TCTGCGTCTAGTTTCTAATA+AGG | 0.282863 | 1_1:-39586307 | Msa0021820:intron |
| TAGAAGCAAAGTCAGTATTT+TGG | 0.299421 | 1_1:-39588192 | Msa0021820:CDS |
| GAGAACATGTTGGGAAATTT+GGG | 0.303343 | 1_1:+39586634 | None:intergenic |
| ATCCACTTCTCATGGCGTTT+TGG | 0.303707 | 1_1:+39587561 | None:intergenic |
| TTTGAAATATCATGAGTATC+AGG | 0.307585 | 1_1:+39588012 | None:intergenic |
| TATTATTGTAGTGCTATAGA+AGG | 0.310711 | 1_1:-39585293 | Msa0021820:intron |
| CATAATCAGCTGTTAGAAAA+TGG | 0.314358 | 1_1:-39586450 | Msa0021820:CDS |
| TGGGTGGAGGTGTGGGAATT+AGG | 0.321825 | 1_1:-39586809 | Msa0021820:CDS |
| CATTGAAAAGTTGATGTTAA+GGG | 0.338244 | 1_1:-39586141 | Msa0021820:CDS |
| ACATCCTGTGAAGTTCGATT+TGG | 0.355404 | 1_1:-39586105 | Msa0021820:CDS |
| CAAGGAGATATTTAAATAAT+GGG | 0.358220 | 1_1:-39587927 | Msa0021820:CDS |
| GCGGGATTTATCATCTATTC+CGG | 0.359802 | 1_1:-39586673 | Msa0021820:CDS |
| GGAACGCCTCTGTACTCAAT+TGG | 0.367411 | 1_1:-39585732 | Msa0021820:CDS |
| ATAACAGGAGAAAAGAAATA+GGG | 0.368760 | 1_1:-39587730 | Msa0021820:intron |
| TATTTAAATATCTCCTTGTC+AGG | 0.372950 | 1_1:+39587932 | None:intergenic |
| TTCTAACAGCTGATTATGTA+TGG | 0.377840 | 1_1:+39586455 | None:intergenic |
| AAGAGGGTGAATAGACAAAT+TGG | 0.379699 | 1_1:-39588728 | Msa0021820:CDS |
| CCTACCAGAAAGAGAGTTAG+AGG | 0.384109 | 1_1:-39588347 | Msa0021820:CDS |
| GGAGGACCTTTCTCAGTTTG+TGG | 0.384548 | 1_1:+39588392 | None:intergenic |
| ATTTGTTTGCTATTGAAAAC+AGG | 0.387510 | 1_1:+39586744 | None:intergenic |
| CCCTCAACACTTTCATTCAA+TGG | 0.391935 | 1_1:-39586341 | Msa0021820:CDS |
| CGAACACGTCCAGGGTGTTC+AGG | 0.394765 | 1_1:+39586837 | None:intergenic |
| ACATTGAAAAGTTGATGTTA+AGG | 0.398182 | 1_1:-39586142 | Msa0021820:CDS |
| GTCCATTGATCGAAGTCAAT+CGG | 0.398422 | 1_1:+39588272 | None:intergenic |
| CATATAATTCACACTCTTCT+GGG | 0.400238 | 1_1:+39586532 | None:intergenic |
| TGTCACCTCATCTGTGGGCA+TGG | 0.403135 | 1_1:+39586377 | None:intergenic |
| CAGATCTTACTAAGGAGATC+AGG | 0.404791 | 1_1:-39586707 | Msa0021820:CDS |
| GTCACCTCATCTGTGGGCAT+GGG | 0.412439 | 1_1:+39586378 | None:intergenic |
| ACGCCATGAGAAGTGGATAA+AGG | 0.438334 | 1_1:-39587556 | Msa0021820:CDS |
| GTCCAACAAACCAGAAAGTA+AGG | 0.443460 | 1_1:+39587820 | None:intergenic |
| GCTATCCTCGAACATCTTTG+CGG | 0.444082 | 1_1:+39585628 | None:intergenic |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 1_1:-39588419 | Msa0021820:CDS |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 1_1:-39588503 | Msa0021820:CDS |
| TGAGCGTTCATCTCACTTTG+TGG | 0.448663 | 1_1:+39588545 | None:intergenic |
| TTGAGTGACAAATCTCCTCT+TGG | 0.450159 | 1_1:-39587901 | Msa0021820:CDS |
| GCATCAGGTCCTCCACAATC+AGG | 0.451852 | 1_1:-39588488 | Msa0021820:CDS |
| TGAGCATTCTTATCGCTTTG+TGG | 0.461839 | 1_1:+39588761 | None:intergenic |
| TTTCAAAATTGAAAGACAAA+TGG | 0.462506 | 1_1:-39587996 | Msa0021820:CDS |
| CTTGCAGGTATATCGGTACT+AGG | 0.462675 | 1_1:+39586612 | None:intergenic |
| ATATGCAAATGTATATAAGT+TGG | 0.463537 | 1_1:-39586484 | Msa0021820:CDS |
| CTATATAACACAGGAACAAT+GGG | 0.465835 | 1_1:-39588040 | Msa0021820:intron |
| CTTTCCAATGTAGTCGCCAT+TGG | 0.471523 | 1_1:-39585486 | Msa0021820:intron |
| TATGCAAATGTATATAAGTT+GGG | 0.472118 | 1_1:-39586483 | Msa0021820:CDS |
| GCTCCATAATATCTCTTGTT+GGG | 0.472661 | 1_1:+39586060 | None:intergenic |
| CAAGATCTGGGAAGATATCA+TGG | 0.475188 | 1_1:-39588132 | Msa0021820:intron |
| CGTGCTGTGGGTGGAGGTGT+GGG | 0.475834 | 1_1:-39586816 | Msa0021820:CDS |
| TCGTGCTGTGGGTGGAGGTG+TGG | 0.477255 | 1_1:-39586817 | Msa0021820:CDS |
| CCCACAGCACGAACACGTCC+AGG | 0.478170 | 1_1:+39586828 | None:intergenic |
| ACAAGGACGTAAAGATATCT+TGG | 0.478352 | 1_1:-39586877 | Msa0021820:CDS |
| GAACGCCTCTGTACTCAATT+GGG | 0.481117 | 1_1:-39585731 | Msa0021820:CDS |
| TCCCGATTGACTTCGATCAA+TGG | 0.481216 | 1_1:-39588274 | Msa0021820:CDS |
| TCATCATTATCCTCTGGTAT+AGG | 0.483406 | 1_1:+39586561 | None:intergenic |
| ATAAGCAGCCTACCAATAAG+AGG | 0.483898 | 1_1:-39588601 | Msa0021820:CDS |
| AAGAGGGTGAATAGAGTCAT+TGG | 0.484806 | 1_1:-39588584 | Msa0021820:CDS |
| CTATTCACCCTCTTATTGGT+AGG | 0.485345 | 1_1:+39588593 | None:intergenic |
| CCCTGGACGTGTTCGTGCTG+TGG | 0.488299 | 1_1:-39586829 | Msa0021820:CDS |
| CCTATGCGTGTGAACGTTGG+AGG | 0.488622 | 1_1:-39587969 | Msa0021820:CDS |
| GTCAGAAGAAACACGTTGTA+TGG | 0.489764 | 1_1:-39587505 | Msa0021820:CDS |
| TTATTCTTCTCTTTGTGTTG+AGG | 0.490705 | 1_1:+39588620 | None:intergenic |
| CGTGTTCGTGCTGTGGGTGG+AGG | 0.494163 | 1_1:-39586822 | Msa0021820:CDS |
| CGGTACTAGGAGAACATGTT+GGG | 0.495155 | 1_1:+39586625 | None:intergenic |
| CCTCTAACTCTCTTTCTGGT+AGG | 0.501052 | 1_1:+39588347 | None:intergenic |
| AACATATAAATTTATTGATG+CGG | 0.502252 | 1_1:-39587878 | Msa0021820:CDS |
| TCCATTGATCGAAGTCAATC+GGG | 0.502439 | 1_1:+39588273 | None:intergenic |
| ATGTCCTCATCATTATCCTC+TGG | 0.503062 | 1_1:+39586555 | None:intergenic |
| GATATACCTGCAAGCACAAA+AGG | 0.504357 | 1_1:-39586603 | Msa0021820:CDS |
| ACCTTTGTCACCTCATCTGT+GGG | 0.504424 | 1_1:+39586372 | None:intergenic |
| TGGTGTCAGAAAGGCGAGAA+AGG | 0.505190 | 1_1:-39585255 | Msa0021820:CDS |
| ATGCTCAGCCTGCCGAAAAG+AGG | 0.506766 | 1_1:-39588745 | Msa0021820:CDS |
| AGCTCCATAATATCTCTTGT+TGG | 0.508698 | 1_1:+39586059 | None:intergenic |
| CACCAAAACGCCATGAGAAG+TGG | 0.513550 | 1_1:-39587563 | Msa0021820:CDS |
| GATATCTTGGCGGAAGCGAT+CGG | 0.514136 | 1_1:-39586864 | Msa0021820:CDS |
| AAGGCACGACAAAAGTCATC+AGG | 0.514998 | 1_1:-39587537 | Msa0021820:CDS |
| ATTATTGTAGTGCTATAGAA+GGG | 0.515001 | 1_1:-39585292 | Msa0021820:intron |
| TCGGTACTAGGAGAACATGT+TGG | 0.515851 | 1_1:+39586624 | None:intergenic |
| TGAGCGTTCATCTCAGTTTG+TGG | 0.515910 | 1_1:+39588461 | None:intergenic |
| TCATCCAAATCGAACTTCAC+AGG | 0.517008 | 1_1:+39586101 | None:intergenic |
| AAGATGATCTTCCATCCAAA+AGG | 0.520107 | 1_1:-39586184 | Msa0021820:CDS |
| CCTCACGATTCTACGAATAT+GGG | 0.520232 | 1_1:-39586012 | Msa0021820:CDS |
| TCACCTCATCTGTGGGCATG+GGG | 0.520539 | 1_1:+39586379 | None:intergenic |
| TATTGATGCGGAAACATGGC+AGG | 0.523083 | 1_1:-39587866 | Msa0021820:CDS |
| AAGAGGGTGAGCAAAGTCAT+TGG | 0.523725 | 1_1:-39588656 | Msa0021820:CDS |
| GTTTGTGGAGGACCTGATTG+TGG | 0.525071 | 1_1:+39588476 | None:intergenic |
| ACTGACTTTGCTTCTAGCAA+TGG | 0.525241 | 1_1:+39588199 | None:intergenic |
| AACAGCTGATTATGTATGGT+TGG | 0.526059 | 1_1:+39586459 | None:intergenic |
| TATGACCGCAAAGATGTTCG+AGG | 0.528313 | 1_1:-39585633 | Msa0021820:CDS |
| AACCTTTGTCACCTCATCTG+TGG | 0.529223 | 1_1:+39586371 | None:intergenic |
| ATTGAAAACAGGTGAGGAAG+AGG | 0.530801 | 1_1:+39586755 | None:intergenic |
| GCATTCTTCTCGCTTTGTTG+AGG | 0.531057 | 1_1:+39588692 | None:intergenic |
| GCTATATAACACAGGAACAA+TGG | 0.531580 | 1_1:-39588041 | Msa0021820:intron |
| CATGAAAGCAGATCTTACTA+AGG | 0.535133 | 1_1:-39586715 | Msa0021820:CDS |
| CCTGGACGTGTTCGTGCTGT+GGG | 0.536349 | 1_1:-39586828 | Msa0021820:CDS |
| GTGCCTTTATCCACTTCTCA+TGG | 0.537475 | 1_1:+39587553 | None:intergenic |
| GGTCCTCCACAAACTGAGAA+AGG | 0.538285 | 1_1:-39588398 | Msa0021820:CDS |
| CAAGTTGAGTGGTGTCAGAA+AGG | 0.541303 | 1_1:-39585264 | Msa0021820:CDS |
| TGCTCAGCCTGCCGAAAAGA+GGG | 0.544188 | 1_1:-39588744 | Msa0021820:CDS |
| CCATTGAATGAAAGTGTTGA+GGG | 0.546713 | 1_1:+39586341 | None:intergenic |
| TTGGGAAATAGTGATGTGTA+TGG | 0.549222 | 1_1:-39585713 | Msa0021820:CDS |
| GATCAGGGATCAAGTGATGC+GGG | 0.557898 | 1_1:-39586691 | Msa0021820:CDS |
| GGACCTTTCTCAGTTTGTGG+AGG | 0.560528 | 1_1:+39588395 | None:intergenic |
| GCTTCCAACCCATCGAACAT+AGG | 0.564671 | 1_1:+39585422 | None:intergenic |
| TAACAGGAGAAAAGAAATAG+GGG | 0.567601 | 1_1:-39587729 | Msa0021820:intron |
| ACAAAGTGAGATGAACGCTC+AGG | 0.570123 | 1_1:-39588543 | Msa0021820:CDS |
| ACAGATGAGGTGACAAAGGT+TGG | 0.570661 | 1_1:-39586369 | Msa0021820:CDS |
| AGTTAGAGGTGCAACGCGAA+TGG | 0.572960 | 1_1:-39588333 | Msa0021820:CDS |
| GAGGCACCATAATGAGAAAG+TGG | 0.573619 | 1_1:+39586774 | None:intergenic |
| GGGAAATGTTGAGAGAAAGC+CGG | 0.574648 | 1_1:+39586654 | None:intergenic |
| AGATCTTACTAAGGAGATCA+GGG | 0.579172 | 1_1:-39586706 | Msa0021820:CDS |
| GGACGTGTTCGTGCTGTGGG+TGG | 0.582261 | 1_1:-39586825 | Msa0021820:CDS |
| GCCATTGAATGAAAGTGTTG+AGG | 0.582439 | 1_1:+39586340 | None:intergenic |
| AATTTATTGATGCGGAAACA+TGG | 0.585376 | 1_1:-39587870 | Msa0021820:CDS |
| AAGATATCTTTACGTCCTTG+TGG | 0.594684 | 1_1:+39586879 | None:intergenic |
| CAAGGACTCTTTGTTCCACA+AGG | 0.595486 | 1_1:-39586894 | Msa0021820:CDS |
| TCAGCTGTTAGAAAATGGTA+TGG | 0.595575 | 1_1:-39586445 | Msa0021820:CDS |
| GCGTTCATCTCACTTTGTGG+AGG | 0.602673 | 1_1:+39588548 | None:intergenic |
| GGCAGGAGTTTATTAAGACG+CGG | 0.602815 | 1_1:-39587849 | Msa0021820:CDS |
| AGTCCCCATGCCCACAGATG+AGG | 0.605255 | 1_1:-39586382 | Msa0021820:CDS |
| GCAGGAGTTTATTAAGACGC+GGG | 0.605793 | 1_1:-39587848 | Msa0021820:CDS |
| CAATAATAAGCAATTGCCAA+TGG | 0.608219 | 1_1:+39585470 | None:intergenic |
| CTATGCGTGTGAACGTTGGA+GGG | 0.609237 | 1_1:-39587968 | Msa0021820:CDS |
| GCATTCTTATCGCTTTGTGG+AGG | 0.610687 | 1_1:+39588764 | None:intergenic |
| CTCCACGAGACAAGTTGTGA+GGG | 0.615575 | 1_1:+39587679 | None:intergenic |
| GCCCACAGATGAGGTGACAA+AGG | 0.615741 | 1_1:-39586373 | Msa0021820:CDS |
| CCTCCAACGTTCACACGCAT+AGG | 0.617116 | 1_1:+39587969 | None:intergenic |
| CATTTAAAACAAACCTGACA+AGG | 0.619779 | 1_1:-39587945 | Msa0021820:CDS |
| AGAAAATGGTATGGTGAGGG+TGG | 0.621632 | 1_1:-39586436 | Msa0021820:CDS |
| GCGTTCATCTCAGTTTGTGG+AGG | 0.628888 | 1_1:+39588464 | None:intergenic |
| ATAAATTTATATGTTCCAAG+AGG | 0.629667 | 1_1:+39587886 | None:intergenic |
| ATCGGACAACCTGAACACCC+TGG | 0.630196 | 1_1:-39586846 | Msa0021820:CDS |
| TTTGCTATTGAAAACAGGTG+AGG | 0.632953 | 1_1:+39586749 | None:intergenic |
| CACGATTCTACGAATATGGG+TGG | 0.637016 | 1_1:-39586009 | Msa0021820:CDS |
| GAAGGGTATAACAAGTTGAG+TGG | 0.638120 | 1_1:-39585275 | Msa0021820:CDS |
| AGATCAGGGATCAAGTGATG+CGG | 0.639256 | 1_1:-39586692 | Msa0021820:CDS |
| CCATAATATCTCTTGTTGGG+AGG | 0.644455 | 1_1:+39586063 | None:intergenic |
| GAAAGGCGAGAAAGGCAACA+TGG | 0.644876 | 1_1:-39585247 | Msa0021820:CDS |
| TCATTATCCTCTGGTATAGG+CGG | 0.645594 | 1_1:+39586564 | None:intergenic |
| TAAGCAGCCTACCAATAAGA+GGG | 0.651339 | 1_1:-39588600 | Msa0021820:CDS |
| CCTCCACGAGACAAGTTGTG+AGG | 0.664113 | 1_1:+39587678 | None:intergenic |
| GGAGTTTATTAAGACGCGGG+AGG | 0.664322 | 1_1:-39587845 | Msa0021820:CDS |
| AACAGGAGAAAAGAAATAGG+GGG | 0.665524 | 1_1:-39587728 | Msa0021820:intron |
| TATCCTATGCGTGTGAACGT+TGG | 0.669950 | 1_1:-39587972 | Msa0021820:CDS |
| TGCAACACCGCCTATACCAG+AGG | 0.670942 | 1_1:-39586571 | Msa0021820:CDS |
| CCCATATTCGTAGAATCGTG+AGG | 0.675861 | 1_1:+39586012 | None:intergenic |
| GTTAGAAAATGGTATGGTGA+GGG | 0.676123 | 1_1:-39586439 | Msa0021820:CDS |
| AGGACGTAAAGATATCTTGG+CGG | 0.678116 | 1_1:-39586874 | Msa0021820:CDS |
| TATACCAGAGGATAATGATG+AGG | 0.687519 | 1_1:-39586559 | Msa0021820:CDS |
| CCACAGCACGAACACGTCCA+GGG | 0.688896 | 1_1:+39586829 | None:intergenic |
| TATTTCCCAATTGAGTACAG+AGG | 0.690904 | 1_1:+39585726 | None:intergenic |
| TGTTAGAAAATGGTATGGTG+AGG | 0.703544 | 1_1:-39586440 | Msa0021820:CDS |
| TGTGGAGGACCTGATTGTGG+AGG | 0.704125 | 1_1:+39588479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTAAATTGTTT+AGG | - | chr1_1:39587783-39587802 | Msa0021820:intron | 10.0% |
| !!! | GAATTGTTTTTTAATATTTT+AGG | - | chr1_1:39588248-39588267 | Msa0021820:CDS | 10.0% |
| !!! | TTTTTAATATTTTAGGTATA+TGG | - | chr1_1:39588255-39588274 | Msa0021820:CDS | 10.0% |
| !! | AACATATAAATTTATTGATG+CGG | - | chr1_1:39586130-39586149 | Msa0021820:CDS | 15.0% |
| !!! | CATTTTACTTACAATTTTAT+CGG | + | chr1_1:39586529-39586548 | None:intergenic | 15.0% |
| !! | GTTAGATTATTAATTGAATT+TGG | - | chr1_1:39586600-39586619 | Msa0021820:CDS | 15.0% |
| !!! | AATTAAGTTTGTTAATTGAA+TGG | - | chr1_1:39586681-39586700 | Msa0021820:CDS | 15.0% |
| !! | ATTAGTCAACATAATTAAAT+GGG | + | chr1_1:39587764-39587783 | None:intergenic | 15.0% |
| !! | TATTAGTCAACATAATTAAA+TGG | + | chr1_1:39587765-39587784 | None:intergenic | 15.0% |
| !!! | TTTTCTTTAACTTTTCATAT+AGG | + | chr1_1:39588113-39588132 | None:intergenic | 15.0% |
| !!! | AAAAAGATTTGTTAACTTTA+GGG | + | chr1_1:39588498-39588517 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTTGTTAACTTT+AGG | + | chr1_1:39588499-39588518 | None:intergenic | 15.0% |
| !! | AGTATATATATTTAACTAAG+TGG | - | chr1_1:39588643-39588662 | Msa0021820:CDS | 15.0% |
| !!! | TTTTTGCTTAAATGTTTGAA+TGG | - | chr1_1:39585703-39585722 | Msa0021820:CDS | 20.0% |
| !! | AAAAAAATTCAAAAGTCATG+TGG | - | chr1_1:39585783-39585802 | Msa0021820:intron | 20.0% |
| !! | AAAAAATTCAAAAGTCATGT+GGG | - | chr1_1:39585784-39585803 | Msa0021820:intron | 20.0% |
| !! | TTTCAAAATTGAAAGACAAA+TGG | - | chr1_1:39586012-39586031 | Msa0021820:CDS | 20.0% |
| !! | ACAAGGAGATATTTAAATAA+TGG | - | chr1_1:39586080-39586099 | Msa0021820:CDS | 20.0% |
| !! | CAAGGAGATATTTAAATAAT+GGG | - | chr1_1:39586081-39586100 | Msa0021820:CDS | 20.0% |
| !! | ATAAATTTATATGTTCCAAG+AGG | + | chr1_1:39586125-39586144 | None:intergenic | 20.0% |
| !! | AAATAACACACAACAATTAA+CGG | + | chr1_1:39586258-39586277 | None:intergenic | 20.0% |
| !!! | AGACTATAAAATTTGAAACA+TGG | - | chr1_1:39586578-39586597 | Msa0021820:CDS | 20.0% |
| !! | GTTAGATAGTTAATTGAATT+TGG | - | chr1_1:39586622-39586641 | Msa0021820:CDS | 20.0% |
| !! | CTAGTAATTTACTTATTTAC+AGG | + | chr1_1:39586772-39586791 | None:intergenic | 20.0% |
| !!! | TTGAATATTTTTATGTTGGT+AGG | - | chr1_1:39587068-39587087 | Msa0021820:intron | 20.0% |
| !! | ATATGCAAATGTATATAAGT+TGG | - | chr1_1:39587524-39587543 | Msa0021820:CDS | 20.0% |
| !! | TATGCAAATGTATATAAGTT+GGG | - | chr1_1:39587525-39587544 | Msa0021820:CDS | 20.0% |
| !!! | TTTTCAATGTAAGATTTTTC+AGG | + | chr1_1:39587856-39587875 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGTTTTCTCCTAA+AGG | + | chr1_1:39585769-39585788 | None:intergenic | 25.0% |
| !! | TTTTATCTGCTATATAACAC+AGG | - | chr1_1:39585959-39585978 | Msa0021820:intron | 25.0% |
| !! | TTTGAAATATCATGAGTATC+AGG | + | chr1_1:39585999-39586018 | None:intergenic | 25.0% |
| ! | TATTTAAATATCTCCTTGTC+AGG | + | chr1_1:39586079-39586098 | None:intergenic | 25.0% |
| !!! | TGTTGTGTGTTATTTATAAC+AGG | - | chr1_1:39586263-39586282 | Msa0021820:intron | 25.0% |
| ! | TATAACAGGAGAAAAGAAAT+AGG | - | chr1_1:39586277-39586296 | Msa0021820:intron | 25.0% |
| ! | ATAACAGGAGAAAAGAAATA+GGG | - | chr1_1:39586278-39586297 | Msa0021820:intron | 25.0% |
| ! | ACATTAGAAACAATGTTGTA+TGG | - | chr1_1:39586880-39586899 | Msa0021820:CDS | 25.0% |
| ! | GTTTCTATATTATGGTTCTT+TGG | - | chr1_1:39586957-39586976 | Msa0021820:intron | 25.0% |
| ! | CAACATAAAAATATTCAAGC+AGG | + | chr1_1:39587066-39587085 | None:intergenic | 25.0% |
| !!! | CTGCTTGAATATTTTTATGT+TGG | - | chr1_1:39587064-39587083 | Msa0021820:intron | 25.0% |
| ! | GTTGTTGAAAAAACAAAACA+AGG | - | chr1_1:39587096-39587115 | Msa0021820:intron | 25.0% |
| !!! | ATTTGTTTGCTATTGAAAAC+AGG | + | chr1_1:39587267-39587286 | None:intergenic | 25.0% |
| !!! | ACATTGAAAAGTTGATGTTA+AGG | - | chr1_1:39587866-39587885 | Msa0021820:CDS | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | - | chr1_1:39587867-39587886 | Msa0021820:CDS | 25.0% |
| !! | TTAATTTAAAGCACAGACAA+AGG | + | chr1_1:39588053-39588072 | None:intergenic | 25.0% |
| ! | TCAAAATTTGAACATGTACA+AGG | + | chr1_1:39588230-39588249 | None:intergenic | 25.0% |
| !!! | TACACTTACTTTTTCAGATA+AGG | + | chr1_1:39588424-39588443 | None:intergenic | 25.0% |
| !!! | AAAACGACATTTTGTTTTTC+TGG | + | chr1_1:39588566-39588585 | None:intergenic | 25.0% |
| ! | TATTATTGTAGTGCTATAGA+AGG | - | chr1_1:39588715-39588734 | Msa0021820:CDS | 25.0% |
| ! | ATTATTGTAGTGCTATAGAA+GGG | - | chr1_1:39588716-39588735 | Msa0021820:CDS | 25.0% |
| TTATTCTTCTCTTTGTGTTG+AGG | + | chr1_1:39585391-39585410 | None:intergenic | 30.0% | |
| ! | TGAGTAATTTTCTCAGTTTG+TGG | + | chr1_1:39585640-39585659 | None:intergenic | 30.0% |
| ! | TAGAAGCAAAGTCAGTATTT+TGG | - | chr1_1:39585816-39585835 | Msa0021820:intron | 30.0% |
| AGACTGTTAAAAACAAGATC+TGG | - | chr1_1:39585863-39585882 | Msa0021820:intron | 30.0% | |
| GACTGTTAAAAACAAGATCT+GGG | - | chr1_1:39585864-39585883 | Msa0021820:intron | 30.0% | |
| CAGATAAAAGAGTTAGTGTA+TGG | + | chr1_1:39585948-39585967 | None:intergenic | 30.0% | |
| CTATATAACACAGGAACAAT+GGG | - | chr1_1:39585968-39585987 | Msa0021820:intron | 30.0% | |
| ! | CATTTAAAACAAACCTGACA+AGG | - | chr1_1:39586063-39586082 | Msa0021820:CDS | 30.0% |
| AATTTATTGATGCGGAAACA+TGG | - | chr1_1:39586138-39586157 | Msa0021820:CDS | 30.0% | |
| TAACAGGAGAAAAGAAATAG+GGG | - | chr1_1:39586279-39586298 | Msa0021820:intron | 30.0% | |
| TACTTAATTAAAGCCACTGA+TGG | - | chr1_1:39586796-39586815 | Msa0021820:CDS | 30.0% | |
| CTATGTGTAAGTTCAATACT+GGG | + | chr1_1:39586915-39586934 | None:intergenic | 30.0% | |
| ACTATGTGTAAGTTCAATAC+TGG | + | chr1_1:39586916-39586935 | None:intergenic | 30.0% | |
| !! | AAGCCACTGTTTCTATATTA+TGG | - | chr1_1:39586949-39586968 | Msa0021820:intron | 30.0% |
| GAACCATAATATAGAAACAG+TGG | + | chr1_1:39586955-39586974 | None:intergenic | 30.0% | |
| CATATAATTCACACTCTTCT+GGG | + | chr1_1:39587479-39587498 | None:intergenic | 30.0% | |
| ACATATAATTCACACTCTTC+TGG | + | chr1_1:39587480-39587499 | None:intergenic | 30.0% | |
| TTCTAACAGCTGATTATGTA+TGG | + | chr1_1:39587556-39587575 | None:intergenic | 30.0% | |
| CATAATCAGCTGTTAGAAAA+TGG | - | chr1_1:39587558-39587577 | Msa0021820:CDS | 30.0% | |
| TGTCTTTATCTATTTGCACT+TGG | - | chr1_1:39587737-39587756 | Msa0021820:intron | 30.0% | |
| GTCTTTATCTATTTGCACTT+GGG | - | chr1_1:39587738-39587757 | Msa0021820:intron | 30.0% | |
| ! | ACAGACAAAGGCATAAATAA+GGG | + | chr1_1:39588041-39588060 | None:intergenic | 30.0% |
| CATTCTGAATTGTTTATAGC+AGG | - | chr1_1:39588155-39588174 | Msa0021820:CDS | 30.0% | |
| CAATAATAAGCAATTGCCAA+TGG | + | chr1_1:39588541-39588560 | None:intergenic | 30.0% | |
| ! | TTGTCTATTCACCCTCTTTT+CGG | + | chr1_1:39585278-39585297 | None:intergenic | 35.0% |
| AAGAGGGTGAATAGACAAAT+TGG | - | chr1_1:39585280-39585299 | Msa0021820:CDS | 35.0% | |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | + | chr1_1:39585494-39585513 | None:intergenic | 35.0% |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | + | chr1_1:39585494-39585513 | None:intergenic | 35.0% |
| ! | GTAATTTTCTCAGTTTGTGG+AGG | + | chr1_1:39585637-39585656 | None:intergenic | 35.0% |
| ! | GTTTTCTCCTAAAGGCTTTT+TGG | + | chr1_1:39585761-39585780 | None:intergenic | 35.0% |
| !! | AAGCAAAGTCAGTATTTTGG+TGG | - | chr1_1:39585819-39585838 | Msa0021820:intron | 35.0% |
| !!! | TCAGTATTTTGGTGGATCAT+TGG | - | chr1_1:39585827-39585846 | Msa0021820:intron | 35.0% |
| !!! | CAGTATTTTGGTGGATCATT+GGG | - | chr1_1:39585828-39585847 | Msa0021820:intron | 35.0% |
| GCTATATAACACAGGAACAA+TGG | - | chr1_1:39585967-39585986 | Msa0021820:intron | 35.0% | |
| !! | ATCCTTACTTTCTGGTTTGT+TGG | - | chr1_1:39586186-39586205 | Msa0021820:CDS | 35.0% |
| AACAGGAGAAAAGAAATAGG+GGG | - | chr1_1:39586280-39586299 | Msa0021820:intron | 35.0% | |
| ! | AAATAGGGGGAAATTGATTC+AGG | - | chr1_1:39586293-39586312 | Msa0021820:intron | 35.0% |
| !! | CTACAATACAGAAGCATTCA+TGG | + | chr1_1:39586718-39586737 | None:intergenic | 35.0% |
| AGTTCAATACTGGGATTGAT+TGG | + | chr1_1:39586906-39586925 | None:intergenic | 35.0% | |
| GCTGCTACAATTACAAACAT+TGG | - | chr1_1:39587027-39587046 | Msa0021820:intron | 35.0% | |
| AAGATATCTTTACGTCCTTG+TGG | + | chr1_1:39587132-39587151 | None:intergenic | 35.0% | |
| ACAAGGACGTAAAGATATCT+TGG | - | chr1_1:39587131-39587150 | Msa0021820:intron | 35.0% | |
| ! | GTGGGAATTAGGCAATATTT+TGG | - | chr1_1:39587210-39587229 | Msa0021820:intron | 35.0% |
| TTTGGTCCACTTTCTCATTA+TGG | - | chr1_1:39587228-39587247 | Msa0021820:intron | 35.0% | |
| !! | TTTGCTATTGAAAACAGGTG+AGG | + | chr1_1:39587262-39587281 | None:intergenic | 35.0% |
| CATGAAAGCAGATCTTACTA+AGG | - | chr1_1:39587293-39587312 | Msa0021820:intron | 35.0% | |
| AGATCTTACTAAGGAGATCA+GGG | - | chr1_1:39587302-39587321 | Msa0021820:intron | 35.0% | |
| GAGAACATGTTGGGAAATTT+GGG | + | chr1_1:39587377-39587396 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGCAGGTATAT+CGG | + | chr1_1:39587406-39587425 | None:intergenic | 35.0% |
| TCATCATTATCCTCTGGTAT+AGG | + | chr1_1:39587450-39587469 | None:intergenic | 35.0% | |
| TATACCAGAGGATAATGATG+AGG | - | chr1_1:39587449-39587468 | Msa0021820:intron | 35.0% | |
| AACAGCTGATTATGTATGGT+TGG | + | chr1_1:39587552-39587571 | None:intergenic | 35.0% | |
| TCAGCTGTTAGAAAATGGTA+TGG | - | chr1_1:39587563-39587582 | Msa0021820:CDS | 35.0% | |
| TGTTAGAAAATGGTATGGTG+AGG | - | chr1_1:39587568-39587587 | Msa0021820:CDS | 35.0% | |
| GTTAGAAAATGGTATGGTGA+GGG | - | chr1_1:39587569-39587588 | Msa0021820:CDS | 35.0% | |
| !! | CCATTGAATGAAAGTGTTGA+GGG | + | chr1_1:39587670-39587689 | None:intergenic | 35.0% |
| ! | TCTGCGTCTAGTTTCTAATA+AGG | - | chr1_1:39587701-39587720 | Msa0021820:CDS | 35.0% |
| AAGATGATCTTCCATCCAAA+AGG | - | chr1_1:39587824-39587843 | Msa0021820:intron | 35.0% | |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | + | chr1_1:39587842-39587861 | None:intergenic | 35.0% |
| GCTCCATAATATCTCTTGTT+GGG | + | chr1_1:39587951-39587970 | None:intergenic | 35.0% | |
| AGCTCCATAATATCTCTTGT+TGG | + | chr1_1:39587952-39587971 | None:intergenic | 35.0% | |
| ! | CACAGACAAAGGCATAAATA+AGG | + | chr1_1:39588042-39588061 | None:intergenic | 35.0% |
| CAACAAACAAACAAACAGCA+AGG | + | chr1_1:39588207-39588226 | None:intergenic | 35.0% | |
| TATTTCCCAATTGAGTACAG+AGG | + | chr1_1:39588285-39588304 | None:intergenic | 35.0% | |
| TTGGGAAATAGTGATGTGTA+TGG | - | chr1_1:39588295-39588314 | Msa0021820:CDS | 35.0% | |
| !! | TGATCCATTTTTCATTCACG+CGG | - | chr1_1:39588324-39588343 | Msa0021820:CDS | 35.0% |
| ! | TTTTCCGCGTGAATGAAAAA+TGG | + | chr1_1:39588331-39588350 | None:intergenic | 35.0% |
| TGAGCATTCTTATCGCTTTG+TGG | + | chr1_1:39585250-39585269 | None:intergenic | 40.0% | |
| ATAAGCAGCCTACCAATAAG+AGG | - | chr1_1:39585407-39585426 | Msa0021820:CDS | 40.0% | |
| TAAGCAGCCTACCAATAAGA+GGG | - | chr1_1:39585408-39585427 | Msa0021820:CDS | 40.0% | |
| CTATTCACCCTCTTATTGGT+AGG | + | chr1_1:39585418-39585437 | None:intergenic | 40.0% | |
| GACTCTATTCACCCTCTTAT+TGG | + | chr1_1:39585422-39585441 | None:intergenic | 40.0% | |
| AAGAGGGTGAATAGAGTCAT+TGG | - | chr1_1:39585424-39585443 | Msa0021820:CDS | 40.0% | |
| !!! | GTGTTGACTCTATTTTCGGT+AGG | + | chr1_1:39585490-39585509 | None:intergenic | 40.0% |
| TCCATTGATCGAAGTCAATC+GGG | + | chr1_1:39585738-39585757 | None:intergenic | 40.0% | |
| GTCCATTGATCGAAGTCAAT+CGG | + | chr1_1:39585739-39585758 | None:intergenic | 40.0% | |
| CAATGGACCAAAAAGCCTTT+AGG | - | chr1_1:39585751-39585770 | Msa0021820:intron | 40.0% | |
| ! | ACTGACTTTGCTTCTAGCAA+TGG | + | chr1_1:39585812-39585831 | None:intergenic | 40.0% |
| CAAGATCTGGGAAGATATCA+TGG | - | chr1_1:39585876-39585895 | Msa0021820:intron | 40.0% | |
| TTGAGTGACAAATCTCCTCT+TGG | - | chr1_1:39586107-39586126 | Msa0021820:CDS | 40.0% | |
| GTCCAACAAACCAGAAAGTA+AGG | + | chr1_1:39586191-39586210 | None:intergenic | 40.0% | |
| GTCAGAAGAAACACGTTGTA+TGG | - | chr1_1:39586503-39586522 | Msa0021820:CDS | 40.0% | |
| AGCAGCACAAACTAAAACAG+TGG | + | chr1_1:39587013-39587032 | None:intergenic | 40.0% | |
| AGGACGTAAAGATATCTTGG+CGG | - | chr1_1:39587134-39587153 | Msa0021820:intron | 40.0% | |
| ATTGAAAACAGGTGAGGAAG+AGG | + | chr1_1:39587256-39587275 | None:intergenic | 40.0% | |
| CAGATCTTACTAAGGAGATC+AGG | - | chr1_1:39587301-39587320 | Msa0021820:intron | 40.0% | |
| GCGGGATTTATCATCTATTC+CGG | - | chr1_1:39587335-39587354 | Msa0021820:intron | 40.0% | |
| GGAGAACATGTTGGGAAATT+TGG | + | chr1_1:39587378-39587397 | None:intergenic | 40.0% | |
| GATATACCTGCAAGCACAAA+AGG | - | chr1_1:39587405-39587424 | Msa0021820:intron | 40.0% | |
| TCATTATCCTCTGGTATAGG+CGG | + | chr1_1:39587447-39587466 | None:intergenic | 40.0% | |
| ATGTCCTCATCATTATCCTC+TGG | + | chr1_1:39587456-39587475 | None:intergenic | 40.0% | |
| CCCTCAACACTTTCATTCAA+TGG | - | chr1_1:39587667-39587686 | Msa0021820:intron | 40.0% | |
| !! | GCCATTGAATGAAAGTGTTG+AGG | + | chr1_1:39587671-39587690 | None:intergenic | 40.0% |
| ! | ACTAGACGCAGAAGTCTTTT+TGG | + | chr1_1:39587693-39587712 | None:intergenic | 40.0% |
| ACATCCTGTGAAGTTCGATT+TGG | - | chr1_1:39587903-39587922 | Msa0021820:CDS | 40.0% | |
| TCATCCAAATCGAACTTCAC+AGG | + | chr1_1:39587910-39587929 | None:intergenic | 40.0% | |
| CCATAATATCTCTTGTTGGG+AGG | + | chr1_1:39587948-39587967 | None:intergenic | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | - | chr1_1:39587945-39587964 | Msa0021820:CDS | 40.0% | |
| CCTCACGATTCTACGAATAT+GGG | - | chr1_1:39587996-39588015 | Msa0021820:CDS | 40.0% | |
| !!! | TGTCGTTTTCCTATGTTCGA+TGG | - | chr1_1:39588577-39588596 | Msa0021820:CDS | 40.0% |
| !! | GTCGTTTTCCTATGTTCGAT+GGG | - | chr1_1:39588578-39588597 | Msa0021820:CDS | 40.0% |
| ! | TTTTCCTATGTTCGATGGGT+TGG | - | chr1_1:39588582-39588601 | Msa0021820:CDS | 40.0% |
| ! | GAAGGGTATAACAAGTTGAG+TGG | - | chr1_1:39588733-39588752 | Msa0021820:CDS | 40.0% |
| GCATTCTTATCGCTTTGTGG+AGG | + | chr1_1:39585247-39585266 | None:intergenic | 45.0% | |
| ! | GCATTCTTCTCGCTTTGTTG+AGG | + | chr1_1:39585319-39585338 | None:intergenic | 45.0% |
| ATGCTCAACCTGCCAAAAAG+AGG | - | chr1_1:39585335-39585354 | Msa0021820:intron | 45.0% | |
| TGCTCAACCTGCCAAAAAGA+GGG | - | chr1_1:39585336-39585355 | Msa0021820:intron | 45.0% | |
| ! | GACTTTGCTCACCCTCTTTT+TGG | + | chr1_1:39585350-39585369 | None:intergenic | 45.0% |
| AAGAGGGTGAGCAAAGTCAT+TGG | - | chr1_1:39585352-39585371 | Msa0021820:intron | 45.0% | |
| TGAGCGTTCATCTCACTTTG+TGG | + | chr1_1:39585466-39585485 | None:intergenic | 45.0% | |
| ACAAAGTGAGATGAACGCTC+AGG | - | chr1_1:39585465-39585484 | Msa0021820:CDS | 45.0% | |
| TGAGCGTTCATCTCAGTTTG+TGG | + | chr1_1:39585550-39585569 | None:intergenic | 45.0% | |
| ! | CCTCTAACTCTCTTTCTGGT+AGG | + | chr1_1:39585664-39585683 | None:intergenic | 45.0% |
| CCTACCAGAAAGAGAGTTAG+AGG | - | chr1_1:39585661-39585680 | Msa0021820:CDS | 45.0% | |
| TGCACCTCTAACTCTCTTTC+TGG | + | chr1_1:39585668-39585687 | None:intergenic | 45.0% | |
| ! | TCCCGATTGACTTCGATCAA+TGG | - | chr1_1:39585734-39585753 | Msa0021820:CDS | 45.0% |
| TATCCTATGCGTGTGAACGT+TGG | - | chr1_1:39586036-39586055 | Msa0021820:CDS | 45.0% | |
| TATTGATGCGGAAACATGGC+AGG | - | chr1_1:39586142-39586161 | Msa0021820:CDS | 45.0% | |
| GGCAGGAGTTTATTAAGACG+CGG | - | chr1_1:39586159-39586178 | Msa0021820:CDS | 45.0% | |
| GCAGGAGTTTATTAAGACGC+GGG | - | chr1_1:39586160-39586179 | Msa0021820:CDS | 45.0% | |
| !! | ACTTCTCATGGCGTTTTGGT+GGG | + | chr1_1:39586446-39586465 | None:intergenic | 45.0% |
| ! | ATCCACTTCTCATGGCGTTT+TGG | + | chr1_1:39586450-39586469 | None:intergenic | 45.0% |
| ACGCCATGAGAAGTGGATAA+AGG | - | chr1_1:39586452-39586471 | Msa0021820:CDS | 45.0% | |
| GTGCCTTTATCCACTTCTCA+TGG | + | chr1_1:39586458-39586477 | None:intergenic | 45.0% | |
| AAGGCACGACAAAAGTCATC+AGG | - | chr1_1:39586471-39586490 | Msa0021820:CDS | 45.0% | |
| TGTGTACATCTCACCATCAG+TGG | + | chr1_1:39586812-39586831 | None:intergenic | 45.0% | |
| CAAGGACTCTTTGTTCCACA+AGG | - | chr1_1:39587114-39587133 | Msa0021820:intron | 45.0% | |
| ! | GAGGCACCATAATGAGAAAG+TGG | + | chr1_1:39587237-39587256 | None:intergenic | 45.0% |
| AGATCAGGGATCAAGTGATG+CGG | - | chr1_1:39587316-39587335 | Msa0021820:intron | 45.0% | |
| GGGAAATGTTGAGAGAAAGC+CGG | + | chr1_1:39587357-39587376 | None:intergenic | 45.0% | |
| CGGTACTAGGAGAACATGTT+GGG | + | chr1_1:39587386-39587405 | None:intergenic | 45.0% | |
| TCGGTACTAGGAGAACATGT+TGG | + | chr1_1:39587387-39587406 | None:intergenic | 45.0% | |
| CTTGCAGGTATATCGGTACT+AGG | + | chr1_1:39587399-39587418 | None:intergenic | 45.0% | |
| ! | CAACTACCTTTTGTGCTTGC+AGG | + | chr1_1:39587414-39587433 | None:intergenic | 45.0% |
| AGAAAATGGTATGGTGAGGG+TGG | - | chr1_1:39587572-39587591 | Msa0021820:CDS | 45.0% | |
| ACCTTTGTCACCTCATCTGT+GGG | + | chr1_1:39587639-39587658 | None:intergenic | 45.0% | |
| AACCTTTGTCACCTCATCTG+TGG | + | chr1_1:39587640-39587659 | None:intergenic | 45.0% | |
| ACAGATGAGGTGACAAAGGT+TGG | - | chr1_1:39587639-39587658 | Msa0021820:intron | 45.0% | |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | + | chr1_1:39587838-39587857 | None:intergenic | 45.0% |
| GCCTCACGATTCTACGAATA+TGG | - | chr1_1:39587995-39588014 | Msa0021820:CDS | 45.0% | |
| CCCATATTCGTAGAATCGTG+AGG | + | chr1_1:39587999-39588018 | None:intergenic | 45.0% | |
| CACGATTCTACGAATATGGG+TGG | - | chr1_1:39587999-39588018 | Msa0021820:CDS | 45.0% | |
| GAACGCCTCTGTACTCAATT+GGG | - | chr1_1:39588277-39588296 | Msa0021820:CDS | 45.0% | |
| TATGACCGCAAAGATGTTCG+AGG | - | chr1_1:39588375-39588394 | Msa0021820:CDS | 45.0% | |
| GCTATCCTCGAACATCTTTG+CGG | + | chr1_1:39588383-39588402 | None:intergenic | 45.0% | |
| CTTTCCAATGTAGTCGCCAT+TGG | - | chr1_1:39588522-39588541 | Msa0021820:CDS | 45.0% | |
| ATTGCCAATGGCGACTACAT+TGG | + | chr1_1:39588529-39588548 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGTGGTGTCAGAA+AGG | - | chr1_1:39588744-39588763 | Msa0021820:CDS | 45.0% |
| ! | CTATTCACCCTCTTTTCGGC+AGG | + | chr1_1:39585274-39585293 | None:intergenic | 50.0% |
| !! | TTGCTCACCCTCTTTTTGGC+AGG | + | chr1_1:39585346-39585365 | None:intergenic | 50.0% |
| GCGTTCATCTCACTTTGTGG+AGG | + | chr1_1:39585463-39585482 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | - | chr1_1:39585505-39585524 | Msa0021820:intron | 50.0% | |
| GTTTGTGGAGGACCTGATTG+TGG | + | chr1_1:39585535-39585554 | None:intergenic | 50.0% | |
| GCGTTCATCTCAGTTTGTGG+AGG | + | chr1_1:39585547-39585566 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | - | chr1_1:39585505-39585524 | Msa0021820:intron | 50.0% | |
| GGTCCTCCACAAACTGAGAA+AGG | - | chr1_1:39585610-39585629 | Msa0021820:CDS | 50.0% | |
| GGACCTTTCTCAGTTTGTGG+AGG | + | chr1_1:39585616-39585635 | None:intergenic | 50.0% | |
| GGAGGACCTTTCTCAGTTTG+TGG | + | chr1_1:39585619-39585638 | None:intergenic | 50.0% | |
| ! | AGTTAGAGGTGCAACGCGAA+TGG | - | chr1_1:39585675-39585694 | Msa0021820:CDS | 50.0% |
| CTATGCGTGTGAACGTTGGA+GGG | - | chr1_1:39586040-39586059 | Msa0021820:CDS | 50.0% | |
| GGAGTTTATTAAGACGCGGG+AGG | - | chr1_1:39586163-39586182 | Msa0021820:CDS | 50.0% | |
| CTCCACGAGACAAGTTGTGA+GGG | + | chr1_1:39586332-39586351 | None:intergenic | 50.0% | |
| !! | CTTCTCATGGCGTTTTGGTG+GGG | + | chr1_1:39586445-39586464 | None:intergenic | 50.0% |
| ! | CACTTCTCATGGCGTTTTGG+TGG | + | chr1_1:39586447-39586466 | None:intergenic | 50.0% |
| CACCAAAACGCCATGAGAAG+TGG | - | chr1_1:39586445-39586464 | Msa0021820:CDS | 50.0% | |
| GATATCTTGGCGGAAGCGAT+CGG | - | chr1_1:39587144-39587163 | Msa0021820:intron | 50.0% | |
| GATCAGGGATCAAGTGATGC+GGG | - | chr1_1:39587317-39587336 | Msa0021820:intron | 50.0% | |
| GGAACGCCTCTGTACTCAAT+TGG | - | chr1_1:39588276-39588295 | Msa0021820:CDS | 50.0% | |
| GCTTCCAACCCATCGAACAT+AGG | + | chr1_1:39588589-39588608 | None:intergenic | 50.0% | |
| ! | TGGTGTCAGAAAGGCGAGAA+AGG | - | chr1_1:39588753-39588772 | Msa0021820:CDS | 50.0% |
| GAAAGGCGAGAAAGGCAACA+TGG | - | chr1_1:39588761-39588780 | Msa0021820:CDS | 50.0% | |
| ATGCTCAGCCTGCCGAAAAG+AGG | - | chr1_1:39585263-39585282 | Msa0021820:CDS | 55.0% | |
| TGCTCAGCCTGCCGAAAAGA+GGG | - | chr1_1:39585264-39585283 | Msa0021820:CDS | 55.0% | |
| GCATCAGGTCCTCCACAATC+AGG | - | chr1_1:39585520-39585539 | Msa0021820:intron | 55.0% | |
| TGTGGAGGACCTGATTGTGG+AGG | + | chr1_1:39585532-39585551 | None:intergenic | 55.0% | |
| CCTCCAACGTTCACACGCAT+AGG | + | chr1_1:39586042-39586061 | None:intergenic | 55.0% | |
| CCTATGCGTGTGAACGTTGG+AGG | - | chr1_1:39586039-39586058 | Msa0021820:CDS | 55.0% | |
| GCGGGAGGATCCTTACTTTC+TGG | - | chr1_1:39586178-39586197 | Msa0021820:CDS | 55.0% | |
| TGCCCTCACAACTTGTCTCG+TGG | - | chr1_1:39586327-39586346 | Msa0021820:CDS | 55.0% | |
| CCTCCACGAGACAAGTTGTG+AGG | + | chr1_1:39586333-39586352 | None:intergenic | 55.0% | |
| CCTCACAACTTGTCTCGTGG+AGG | - | chr1_1:39586330-39586349 | Msa0021820:CDS | 55.0% | |
| !! | TCATGGCGTTTTGGTGGGGA+TGG | + | chr1_1:39586441-39586460 | None:intergenic | 55.0% |
| ATCGGACAACCTGAACACCC+TGG | - | chr1_1:39587162-39587181 | Msa0021820:intron | 55.0% | |
| ! | TGGGTGGAGGTGTGGGAATT+AGG | - | chr1_1:39587199-39587218 | Msa0021820:intron | 55.0% |
| TGCAACACCGCCTATACCAG+AGG | - | chr1_1:39587437-39587456 | Msa0021820:intron | 55.0% | |
| TCACCTCATCTGTGGGCATG+GGG | + | chr1_1:39587632-39587651 | None:intergenic | 55.0% | |
| GTCACCTCATCTGTGGGCAT+GGG | + | chr1_1:39587633-39587652 | None:intergenic | 55.0% | |
| TGTCACCTCATCTGTGGGCA+TGG | + | chr1_1:39587634-39587653 | None:intergenic | 55.0% | |
| GCCCACAGATGAGGTGACAA+AGG | - | chr1_1:39587635-39587654 | Msa0021820:intron | 55.0% | |
| !! | TGGCGTTTTGGTGGGGATGG+AGG | + | chr1_1:39586438-39586457 | None:intergenic | 60.0% |
| ! | CGAACACGTCCAGGGTGTTC+AGG | + | chr1_1:39587174-39587193 | None:intergenic | 60.0% |
| CCACAGCACGAACACGTCCA+GGG | + | chr1_1:39587182-39587201 | None:intergenic | 60.0% | |
| CCTGGACGTGTTCGTGCTGT+GGG | - | chr1_1:39587180-39587199 | Msa0021820:intron | 60.0% | |
| AGTCCCCATGCCCACAGATG+AGG | - | chr1_1:39587626-39587645 | Msa0021820:intron | 60.0% | |
| CCCTGGACGTGTTCGTGCTG+TGG | - | chr1_1:39587179-39587198 | Msa0021820:intron | 65.0% | |
| CCCACAGCACGAACACGTCC+AGG | + | chr1_1:39587183-39587202 | None:intergenic | 65.0% | |
| GGACGTGTTCGTGCTGTGGG+TGG | - | chr1_1:39587183-39587202 | Msa0021820:intron | 65.0% | |
| CGTGTTCGTGCTGTGGGTGG+AGG | - | chr1_1:39587186-39587205 | Msa0021820:intron | 65.0% | |
| TCGTGCTGTGGGTGGAGGTG+TGG | - | chr1_1:39587191-39587210 | Msa0021820:intron | 65.0% | |
| ! | CGTGCTGTGGGTGGAGGTGT+GGG | - | chr1_1:39587192-39587211 | Msa0021820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 39585226 | 39588804 | 39585226 | ID=Msa0021820;Name=Msa0021820 |
| chr1_1 | mRNA | 39585226 | 39588804 | 39585226 | ID=Msa0021820-mRNA-1;Parent=Msa0021820;Name=Msa0021820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.77|1|1|9|0|753 |
| chr1_1 | exon | 39588133 | 39588804 | 39588133 | ID=Msa0021820-mRNA-1:exon:12091;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39587831 | 39588049 | 39587831 | ID=Msa0021820-mRNA-1:exon:12090;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39587685 | 39587745 | 39587685 | ID=Msa0021820-mRNA-1:exon:12089;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39587494 | 39587603 | 39587494 | ID=Msa0021820-mRNA-1:exon:12088;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39586308 | 39586940 | 39586308 | ID=Msa0021820-mRNA-1:exon:12087;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39586008 | 39586225 | 39586008 | ID=Msa0021820-mRNA-1:exon:12086;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39585596 | 39585760 | 39585596 | ID=Msa0021820-mRNA-1:exon:12085;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39585391 | 39585495 | 39585391 | ID=Msa0021820-mRNA-1:exon:12084;Parent=Msa0021820-mRNA-1 |
| chr1_1 | exon | 39585226 | 39585304 | 39585226 | ID=Msa0021820-mRNA-1:exon:12083;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39588133 | 39588804 | 39588133 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39587831 | 39588049 | 39587831 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39587685 | 39587745 | 39587685 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39587494 | 39587603 | 39587494 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39586308 | 39586940 | 39586308 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39586008 | 39586225 | 39586008 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39585596 | 39585760 | 39585596 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39585391 | 39585495 | 39585391 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| chr1_1 | CDS | 39585226 | 39585304 | 39585226 | ID=Msa0021820-mRNA-1:cds;Parent=Msa0021820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
