Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117050 | AES67379.2 | 57.040 | 554 | 222 | 9 | 153 | 701 | 615 | 1157 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117050 | G7IU29 | 57.040 | 554 | 222 | 9 | 153 | 701 | 615 | 1157 | 0.0 | 659 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021820 | Msa0117050 | 0.822127 | 2.797449e-53 | -8.615850e-47 |
| Msa0117050 | Msa0449370 | 0.834578 | 2.764228e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117050 | MtrunA17_Chr2g0325841 | 56.028 | 564 | 222 | 10 | 153 | 701 | 584 | 1136 | 0.0 | 650 |
| Msa0117050 | MtrunA17_Chr4g0010671 | 54.198 | 393 | 151 | 9 | 151 | 533 | 94 | 467 | 8.92e-129 | 394 |
| Msa0117050 | MtrunA17_Chr4g0010671 | 40.800 | 125 | 52 | 4 | 294 | 405 | 415 | 530 | 3.72e-17 | 85.5 |
| Msa0117050 | MtrunA17_Chr1g0153901 | 37.821 | 312 | 159 | 7 | 164 | 449 | 108 | 410 | 1.17e-41 | 159 |
| Msa0117050 | MtrunA17_Chr1g0153901 | 32.593 | 135 | 84 | 2 | 537 | 664 | 405 | 539 | 1.13e-17 | 87.0 |
| Msa0117050 | MtrunA17_Chr6g0469071 | 36.656 | 311 | 163 | 7 | 164 | 449 | 108 | 409 | 4.76e-39 | 153 |
| Msa0117050 | MtrunA17_Chr6g0469071 | 30.994 | 171 | 92 | 4 | 537 | 700 | 404 | 555 | 3.80e-18 | 88.6 |
| Msa0117050 | MtrunA17_Chr5g0434431 | 36.522 | 115 | 67 | 2 | 590 | 700 | 1 | 113 | 1.57e-16 | 78.2 |
| Msa0117050 | MtrunA17_Chr6g0466851 | 24.595 | 370 | 218 | 16 | 169 | 522 | 127 | 451 | 2.75e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 153 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAACATGTTGGGAAATT+TGG | 0.085053 | 1_3:-37003372 | None:intergenic |
| TGCACCTCTAACTCTCTTTC+TGG | 0.155024 | 1_3:-37001671 | None:intergenic |
| GACTCTATTCACCCTCTTAT+TGG | 0.157530 | 1_3:-37001425 | None:intergenic |
| GCCTCACGATTCTACGAATA+TGG | 0.197476 | 1_3:+37003992 | Msa0117050:CDS |
| TATTAAGGATCCTTACTTTC+TGG | 0.228366 | 1_3:+37002175 | Msa0117050:CDS |
| CCTCCCAACAAGAGATATTA+TGG | 0.231757 | 1_3:+37003942 | Msa0117050:CDS |
| ACATATAATTCACACTCTTC+TGG | 0.254643 | 1_3:-37003474 | None:intergenic |
| TTTGGTCCACTTTCTCATTA+TGG | 0.256019 | 1_3:+37003225 | Msa0117050:CDS |
| ACATGGAGATATTTAAATAA+TGG | 0.264657 | 1_3:+37002086 | Msa0117050:CDS |
| TATAACAGGAGAAAAGAAAT+AGG | 0.271660 | 1_3:+37002274 | Msa0117050:intron |
| GTGGGAATTAGGCAATATTT+TGG | 0.277082 | 1_3:+37003207 | Msa0117050:CDS |
| TCTGCGTCTAGTTTCTAATA+AGG | 0.282863 | 1_3:+37003698 | Msa0117050:CDS |
| GAGAACATGTTGGGAAATTT+GGG | 0.303343 | 1_3:-37003371 | None:intergenic |
| ATCCACTTCTCATGGCGTTT+TGG | 0.303707 | 1_3:-37002444 | None:intergenic |
| TTTGAAATATCATGAGTATC+AGG | 0.307585 | 1_3:-37002002 | None:intergenic |
| TATTATTGTAGTGCTATAGA+AGG | 0.310711 | 1_3:+37004694 | Msa0117050:intron |
| CATAATCAGCTGTTAGAAAA+TGG | 0.314358 | 1_3:+37003555 | Msa0117050:CDS |
| AACATGGCAGGAGTTTATTA+AGG | 0.318768 | 1_3:+37002160 | Msa0117050:CDS |
| TGGGTGGAGGTGTGGGAATT+AGG | 0.321825 | 1_3:+37003196 | Msa0117050:CDS |
| CATTGAAAAGTTGATGTTAA+GGG | 0.338244 | 1_3:+37003864 | Msa0117050:CDS |
| CATGGAGATATTTAAATAAT+GGG | 0.352129 | 1_3:+37002087 | Msa0117050:CDS |
| ACATCCTGTGAAGTTCGATT+TGG | 0.355404 | 1_3:+37003900 | Msa0117050:CDS |
| GCGGGATTTATCATCTATTC+CGG | 0.359802 | 1_3:+37003332 | Msa0117050:CDS |
| GGAACGCCTCTGTACTCAAT+TGG | 0.367411 | 1_3:+37004255 | Msa0117050:CDS |
| ATAACAGGAGAAAAGAAATA+GGG | 0.368760 | 1_3:+37002275 | Msa0117050:intron |
| TTCTAACAGCTGATTATGTA+TGG | 0.377840 | 1_3:-37003550 | None:intergenic |
| AAGAGGGTGAATAGACAAAT+TGG | 0.379699 | 1_3:+37001286 | Msa0117050:CDS |
| GGAGGACCTTTCTCAGTTTG+TGG | 0.384548 | 1_3:-37001622 | None:intergenic |
| ATTTGTTTGCTATTGAAAAC+AGG | 0.387510 | 1_3:-37003261 | None:intergenic |
| CCCTCAACACTTTCATTCAA+TGG | 0.391935 | 1_3:+37003664 | Msa0117050:CDS |
| CGAACACGTCCAGGGTGTTC+AGG | 0.394765 | 1_3:-37003168 | None:intergenic |
| ACATTGAAAAGTTGATGTTA+AGG | 0.398182 | 1_3:+37003863 | Msa0117050:CDS |
| CATATAATTCACACTCTTCT+GGG | 0.400238 | 1_3:-37003473 | None:intergenic |
| TGTCACCTCATCTGTGGGCA+TGG | 0.403135 | 1_3:-37003628 | None:intergenic |
| CAGATCTTACTAAGGAGATC+AGG | 0.404791 | 1_3:+37003298 | Msa0117050:CDS |
| GTCACCTCATCTGTGGGCAT+GGG | 0.412439 | 1_3:-37003627 | None:intergenic |
| TATTTAAATATCTCCATGTC+AGG | 0.432493 | 1_3:-37002082 | None:intergenic |
| ACGCCATGAGAAGTGGATAA+AGG | 0.438334 | 1_3:+37002449 | Msa0117050:CDS |
| GCTATCCTCGAACATCTTTG+CGG | 0.444082 | 1_3:-37004359 | None:intergenic |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 1_3:+37001511 | Msa0117050:CDS |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 1_3:+37001595 | Msa0117050:CDS |
| TGAGCGTTCATCTCACTTTG+TGG | 0.448663 | 1_3:-37001469 | None:intergenic |
| TTCCAACAAACCAGAAAGTA+AGG | 0.449508 | 1_3:-37002185 | None:intergenic |
| TTGAGTGACAAATCTCCTCT+TGG | 0.450159 | 1_3:+37002113 | Msa0117050:CDS |
| GCATCAGGTCCTCCACAATC+AGG | 0.451852 | 1_3:+37001526 | Msa0117050:CDS |
| TGAGCATTCTTATCGCTTTG+TGG | 0.461839 | 1_3:-37001253 | None:intergenic |
| TTTCAAAATTGAAAGACAAA+TGG | 0.462506 | 1_3:+37002018 | Msa0117050:CDS |
| CTTGCAGGTATATCGGTACT+AGG | 0.462675 | 1_3:-37003393 | None:intergenic |
| ATATGCAAATGTATATAAGT+TGG | 0.463537 | 1_3:+37003521 | Msa0117050:CDS |
| CTATATAACACAGGAACAAT+GGG | 0.465835 | 1_3:+37001974 | Msa0117050:intron |
| CTTTCCAATGTAGTCGCCAT+TGG | 0.471523 | 1_3:+37004501 | Msa0117050:intron |
| TATGCAAATGTATATAAGTT+GGG | 0.472118 | 1_3:+37003522 | Msa0117050:CDS |
| GCTCCATAATATCTCTTGTT+GGG | 0.472661 | 1_3:-37003945 | None:intergenic |
| CGTGCTGTGGGTGGAGGTGT+GGG | 0.475834 | 1_3:+37003189 | Msa0117050:CDS |
| TCGTGCTGTGGGTGGAGGTG+TGG | 0.477255 | 1_3:+37003188 | Msa0117050:CDS |
| CCCACAGCACGAACACGTCC+AGG | 0.478170 | 1_3:-37003177 | None:intergenic |
| ACAAGGACGTAAAGATATCT+TGG | 0.478352 | 1_3:+37003128 | Msa0117050:CDS |
| GAACGCCTCTGTACTCAATT+GGG | 0.481117 | 1_3:+37004256 | Msa0117050:CDS |
| TCATCATTATCCTCTGGTAT+AGG | 0.483406 | 1_3:-37003444 | None:intergenic |
| ATAAGCAGCCTACCAATAAG+AGG | 0.483898 | 1_3:+37001413 | Msa0117050:CDS |
| AAGAGGGTGAATAGAGTCAT+TGG | 0.484806 | 1_3:+37001430 | Msa0117050:CDS |
| CTATTCACCCTCTTATTGGT+AGG | 0.485345 | 1_3:-37001421 | None:intergenic |
| AAGATTATCTTCCATCCAAA+AGG | 0.486279 | 1_3:+37003821 | Msa0117050:CDS |
| CCCTGGACGTGTTCGTGCTG+TGG | 0.488299 | 1_3:+37003176 | Msa0117050:CDS |
| CCTATGCGTGTGAACGTTGG+AGG | 0.488622 | 1_3:+37002045 | Msa0117050:CDS |
| GTCAGAAGAAACACGTTGTA+TGG | 0.489764 | 1_3:+37002500 | Msa0117050:CDS |
| TTATTCTTCTCTTTGTGTTG+AGG | 0.490705 | 1_3:-37001394 | None:intergenic |
| CGTGTTCGTGCTGTGGGTGG+AGG | 0.494163 | 1_3:+37003183 | Msa0117050:CDS |
| CGGTACTAGGAGAACATGTT+GGG | 0.495155 | 1_3:-37003380 | None:intergenic |
| CCTCTAACTCTCTTTCTGGT+AGG | 0.501052 | 1_3:-37001667 | None:intergenic |
| AACATATAAATTTATTGATG+CGG | 0.502252 | 1_3:+37002136 | Msa0117050:CDS |
| ATGTCCTCATCATTATCCTC+TGG | 0.503062 | 1_3:-37003450 | None:intergenic |
| GATATACCTGCAAGCACAAA+AGG | 0.504357 | 1_3:+37003402 | Msa0117050:CDS |
| ACCTTTGTCACCTCATCTGT+GGG | 0.504424 | 1_3:-37003633 | None:intergenic |
| TGGTGTCAGAAAGGCGAGAA+AGG | 0.505190 | 1_3:+37004732 | Msa0117050:CDS |
| ATGCTCAGCCTGCCGAAAAG+AGG | 0.506766 | 1_3:+37001269 | Msa0117050:CDS |
| AGCTCCATAATATCTCTTGT+TGG | 0.508698 | 1_3:-37003946 | None:intergenic |
| CACCAAAACGCCATGAGAAG+TGG | 0.513550 | 1_3:+37002442 | Msa0117050:CDS |
| GATATCTTGGCGGAAGCGAT+CGG | 0.514136 | 1_3:+37003141 | Msa0117050:CDS |
| AAGGCACGACAAAAGTCATC+AGG | 0.514998 | 1_3:+37002468 | Msa0117050:CDS |
| ATTATTGTAGTGCTATAGAA+GGG | 0.515001 | 1_3:+37004695 | Msa0117050:intron |
| TCGGTACTAGGAGAACATGT+TGG | 0.515851 | 1_3:-37003381 | None:intergenic |
| TGAGCGTTCATCTCAGTTTG+TGG | 0.515910 | 1_3:-37001553 | None:intergenic |
| TCATCCAAATCGAACTTCAC+AGG | 0.517008 | 1_3:-37003904 | None:intergenic |
| CCTCACGATTCTACGAATAT+GGG | 0.520232 | 1_3:+37003993 | Msa0117050:CDS |
| TCACCTCATCTGTGGGCATG+GGG | 0.520539 | 1_3:-37003626 | None:intergenic |
| TATTGATGCGGAAACATGGC+AGG | 0.523083 | 1_3:+37002148 | Msa0117050:CDS |
| AAGAGGGTGAGCAAAGTCAT+TGG | 0.523725 | 1_3:+37001358 | Msa0117050:CDS |
| GTTTGTGGAGGACCTGATTG+TGG | 0.525071 | 1_3:-37001538 | None:intergenic |
| AACAGCTGATTATGTATGGT+TGG | 0.526059 | 1_3:-37003546 | None:intergenic |
| TATGACCGCAAAGATGTTCG+AGG | 0.528313 | 1_3:+37004354 | Msa0117050:CDS |
| AACCTTTGTCACCTCATCTG+TGG | 0.529223 | 1_3:-37003634 | None:intergenic |
| ATTGAAAACAGGTGAGGAAG+AGG | 0.530801 | 1_3:-37003250 | None:intergenic |
| GCATTCTTCTCGCTTTGTTG+AGG | 0.531057 | 1_3:-37001322 | None:intergenic |
| GCTATATAACACAGGAACAA+TGG | 0.531580 | 1_3:+37001973 | Msa0117050:intron |
| CATGAAAGCAGATCTTACTA+AGG | 0.535133 | 1_3:+37003290 | Msa0117050:CDS |
| CCTGGACGTGTTCGTGCTGT+GGG | 0.536349 | 1_3:+37003177 | Msa0117050:CDS |
| GTGCCTTTATCCACTTCTCA+TGG | 0.537475 | 1_3:-37002452 | None:intergenic |
| GGTCCTCCACAAACTGAGAA+AGG | 0.538285 | 1_3:+37001616 | Msa0117050:CDS |
| CAAGTTGAGTGGTGTCAGAA+AGG | 0.541303 | 1_3:+37004723 | Msa0117050:CDS |
| TGCTCAGCCTGCCGAAAAGA+GGG | 0.544188 | 1_3:+37001270 | Msa0117050:CDS |
| CCATTGAATGAAAGTGTTGA+GGG | 0.546713 | 1_3:-37003664 | None:intergenic |
| TTGGGAAATAGTGATGTGTA+TGG | 0.549222 | 1_3:+37004274 | Msa0117050:CDS |
| GATCAGGGATCAAGTGATGC+GGG | 0.557898 | 1_3:+37003314 | Msa0117050:CDS |
| GGACCTTTCTCAGTTTGTGG+AGG | 0.560528 | 1_3:-37001619 | None:intergenic |
| GCTTCCAACCCATCGAACAT+AGG | 0.561020 | 1_3:-37004565 | None:intergenic |
| TAACAGGAGAAAAGAAATAG+GGG | 0.567601 | 1_3:+37002276 | Msa0117050:intron |
| ACAAAGTGAGATGAACGCTC+AGG | 0.570123 | 1_3:+37001471 | Msa0117050:CDS |
| ACAGATGAGGTGACAAAGGT+TGG | 0.570661 | 1_3:+37003636 | Msa0117050:CDS |
| CATTTAAAACAAACCTGACA+TGG | 0.573503 | 1_3:+37002069 | Msa0117050:CDS |
| GAGGCACCATAATGAGAAAG+TGG | 0.573619 | 1_3:-37003231 | None:intergenic |
| GGGAAATGTTGAGAGAAAGC+CGG | 0.574648 | 1_3:-37003351 | None:intergenic |
| TGCCCTCACAACTTGTCTCG+TGG | 0.576996 | 1_3:+37002324 | Msa0117050:CDS |
| AGATCTTACTAAGGAGATCA+GGG | 0.579172 | 1_3:+37003299 | Msa0117050:CDS |
| GGACGTGTTCGTGCTGTGGG+TGG | 0.582261 | 1_3:+37003180 | Msa0117050:CDS |
| GCCATTGAATGAAAGTGTTG+AGG | 0.582439 | 1_3:-37003665 | None:intergenic |
| AATTTATTGATGCGGAAACA+TGG | 0.585376 | 1_3:+37002144 | Msa0117050:CDS |
| AAGATATCTTTACGTCCTTG+TGG | 0.594684 | 1_3:-37003126 | None:intergenic |
| CAAGGACTCTTTGTTCCACA+AGG | 0.595486 | 1_3:+37003111 | Msa0117050:CDS |
| TCAGCTGTTAGAAAATGGTA+TGG | 0.595575 | 1_3:+37003560 | Msa0117050:CDS |
| GCGTTCATCTCACTTTGTGG+AGG | 0.602673 | 1_3:-37001466 | None:intergenic |
| AGTCCCCATGCCCACAGATG+AGG | 0.605255 | 1_3:+37003623 | Msa0117050:CDS |
| CAATAATAAGCAATTGCCAA+TGG | 0.608219 | 1_3:-37004517 | None:intergenic |
| CTATGCGTGTGAACGTTGGA+GGG | 0.609237 | 1_3:+37002046 | Msa0117050:CDS |
| GCATTCTTATCGCTTTGTGG+AGG | 0.610687 | 1_3:-37001250 | None:intergenic |
| CTCCACGAGACAAGTTGTGA+GGG | 0.615575 | 1_3:-37002326 | None:intergenic |
| GCCCACAGATGAGGTGACAA+AGG | 0.615741 | 1_3:+37003632 | Msa0117050:CDS |
| CCTCCAACGTTCACACGCAT+AGG | 0.617116 | 1_3:-37002045 | None:intergenic |
| AGAAAATGGTATGGTGAGGG+TGG | 0.621632 | 1_3:+37003569 | Msa0117050:CDS |
| GCGTTCATCTCAGTTTGTGG+AGG | 0.628888 | 1_3:-37001550 | None:intergenic |
| ATAAATTTATATGTTCCAAG+AGG | 0.629667 | 1_3:-37002128 | None:intergenic |
| ATCGGACAACCTGAACACCC+TGG | 0.630196 | 1_3:+37003159 | Msa0117050:CDS |
| TTTGCTATTGAAAACAGGTG+AGG | 0.632953 | 1_3:-37003256 | None:intergenic |
| CACGATTCTACGAATATGGG+TGG | 0.637016 | 1_3:+37003996 | Msa0117050:CDS |
| GAAGGGTATAACAAGTTGAG+TGG | 0.638120 | 1_3:+37004712 | Msa0117050:CDS |
| AGATCAGGGATCAAGTGATG+CGG | 0.639256 | 1_3:+37003313 | Msa0117050:CDS |
| CCATAATATCTCTTGTTGGG+AGG | 0.644455 | 1_3:-37003942 | None:intergenic |
| GAAAGGCGAGAAAGGCAACA+TGG | 0.644876 | 1_3:+37004740 | Msa0117050:CDS |
| TCATTATCCTCTGGTATAGG+CGG | 0.645594 | 1_3:-37003441 | None:intergenic |
| TGCAGCACCGCCTATACCAG+AGG | 0.649752 | 1_3:+37003434 | Msa0117050:CDS |
| TAAGCAGCCTACCAATAAGA+GGG | 0.651339 | 1_3:+37001414 | Msa0117050:CDS |
| AACAGGAGAAAAGAAATAGG+GGG | 0.665524 | 1_3:+37002277 | Msa0117050:intron |
| TATCCTATGCGTGTGAACGT+TGG | 0.669950 | 1_3:+37002042 | Msa0117050:CDS |
| CCTCCACGAGACAAGTTGTG+AGG | 0.669963 | 1_3:-37002327 | None:intergenic |
| CCCATATTCGTAGAATCGTG+AGG | 0.675861 | 1_3:-37003993 | None:intergenic |
| GTTAGAAAATGGTATGGTGA+GGG | 0.676123 | 1_3:+37003566 | Msa0117050:CDS |
| AGGACGTAAAGATATCTTGG+CGG | 0.678116 | 1_3:+37003131 | Msa0117050:CDS |
| CCTCACAACTTGTCTCGTGG+AGG | 0.679685 | 1_3:+37002327 | Msa0117050:CDS |
| TATACCAGAGGATAATGATG+AGG | 0.687519 | 1_3:+37003446 | Msa0117050:CDS |
| CCACAGCACGAACACGTCCA+GGG | 0.688896 | 1_3:-37003176 | None:intergenic |
| TATTTCCCAATTGAGTACAG+AGG | 0.690904 | 1_3:-37004261 | None:intergenic |
| TGTTAGAAAATGGTATGGTG+AGG | 0.703544 | 1_3:+37003565 | Msa0117050:CDS |
| TGTGGAGGACCTGATTGTGG+AGG | 0.704125 | 1_3:-37001535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTAAATTGTTT+AGG | + | chr1_3:37003780-37003799 | Msa0117050:intron | 10.0% |
| !!! | GAATTGTTTTTTAATATTTT+AGG | + | chr1_3:37004227-37004246 | Msa0117050:intron | 10.0% |
| !!! | TTTTTAATATTTTAGGTATA+TGG | + | chr1_3:37004234-37004253 | Msa0117050:intron | 10.0% |
| !! | AACATATAAATTTATTGATG+CGG | + | chr1_3:37002136-37002155 | Msa0117050:CDS | 15.0% |
| !! | AAATAACATACAACAATTAA+CGG | - | chr1_3:37002255-37002274 | None:intergenic | 15.0% |
| !!! | CATTTTACTTACAATTTTAT+CGG | - | chr1_3:37002526-37002545 | None:intergenic | 15.0% |
| !! | GTTAGATTATTAATTGAATT+TGG | + | chr1_3:37002597-37002616 | Msa0117050:intron | 15.0% |
| !!! | AATTAAGTTTGTTAATTGAA+TGG | + | chr1_3:37002678-37002697 | Msa0117050:intron | 15.0% |
| !! | ATTAGTCAACATAATTAAAT+GGG | - | chr1_3:37003761-37003780 | None:intergenic | 15.0% |
| !! | TATTAGTCAACATAATTAAA+TGG | - | chr1_3:37003762-37003781 | None:intergenic | 15.0% |
| !!! | AAAAAGATTTGTTAACTTTA+GGG | - | chr1_3:37004477-37004496 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTTGTTAACTTT+AGG | - | chr1_3:37004478-37004497 | None:intergenic | 15.0% |
| !! | AGTATATATATTTAACTAAG+TGG | + | chr1_3:37004622-37004641 | Msa0117050:intron | 15.0% |
| !! | AAAAAAATTCAAAAGTCATG+TGG | + | chr1_3:37001789-37001808 | Msa0117050:intron | 20.0% |
| !! | AAAAAATTCAAAAGTCATGT+GGG | + | chr1_3:37001790-37001809 | Msa0117050:intron | 20.0% |
| !! | TTTCAAAATTGAAAGACAAA+TGG | + | chr1_3:37002018-37002037 | Msa0117050:CDS | 20.0% |
| !! | ACATGGAGATATTTAAATAA+TGG | + | chr1_3:37002086-37002105 | Msa0117050:CDS | 20.0% |
| !! | CATGGAGATATTTAAATAAT+GGG | + | chr1_3:37002087-37002106 | Msa0117050:CDS | 20.0% |
| !! | ATAAATTTATATGTTCCAAG+AGG | - | chr1_3:37002131-37002150 | None:intergenic | 20.0% |
| !!! | TGTTGTATGTTATTTATAAC+AGG | + | chr1_3:37002260-37002279 | Msa0117050:intron | 20.0% |
| !!! | AGACTATAAAATTTGAAACA+TGG | + | chr1_3:37002575-37002594 | Msa0117050:intron | 20.0% |
| !! | GTTAGATAGTTAATTGAATT+TGG | + | chr1_3:37002619-37002638 | Msa0117050:intron | 20.0% |
| !! | CTAGTAATTTACTTATTTAC+AGG | - | chr1_3:37002769-37002788 | None:intergenic | 20.0% |
| !!! | TTGAATATTTTTATGTTGGT+AGG | + | chr1_3:37003065-37003084 | Msa0117050:intron | 20.0% |
| !! | TTTGTTGAAAAAACAAAACA+AGG | + | chr1_3:37003093-37003112 | Msa0117050:CDS | 20.0% |
| !! | ATATGCAAATGTATATAAGT+TGG | + | chr1_3:37003521-37003540 | Msa0117050:CDS | 20.0% |
| !! | TATGCAAATGTATATAAGTT+GGG | + | chr1_3:37003522-37003541 | Msa0117050:CDS | 20.0% |
| !!! | TTTTCAATGTAAGATTTTTC+AGG | - | chr1_3:37003853-37003872 | None:intergenic | 20.0% |
| !! | TTTTTGCTTAAACGTTTGAA+TGG | + | chr1_3:37001709-37001728 | Msa0117050:intron | 25.0% |
| !! | TTTTATCTGCTATATAACAC+AGG | + | chr1_3:37001965-37001984 | Msa0117050:intron | 25.0% |
| !! | TTTGAAATATCATGAGTATC+AGG | - | chr1_3:37002005-37002024 | None:intergenic | 25.0% |
| ! | TATTTAAATATCTCCATGTC+AGG | - | chr1_3:37002085-37002104 | None:intergenic | 25.0% |
| ! | TATAACAGGAGAAAAGAAAT+AGG | + | chr1_3:37002274-37002293 | Msa0117050:intron | 25.0% |
| ! | ATAACAGGAGAAAAGAAATA+GGG | + | chr1_3:37002275-37002294 | Msa0117050:intron | 25.0% |
| ! | ACATTAGAAACAATGTTGTA+TGG | + | chr1_3:37002877-37002896 | Msa0117050:intron | 25.0% |
| ! | GTTTCTATATTATGGTTCTT+TGG | + | chr1_3:37002954-37002973 | Msa0117050:intron | 25.0% |
| ! | CAACATAAAAATATTCAAGC+AGG | - | chr1_3:37003063-37003082 | None:intergenic | 25.0% |
| !!! | CTGCTTGAATATTTTTATGT+TGG | + | chr1_3:37003061-37003080 | Msa0117050:intron | 25.0% |
| !!! | ATTTGTTTGCTATTGAAAAC+AGG | - | chr1_3:37003264-37003283 | None:intergenic | 25.0% |
| ! | TGTCTTTATCTATTTACACT+TGG | + | chr1_3:37003734-37003753 | Msa0117050:intron | 25.0% |
| ! | GTCTTTATCTATTTACACTT+GGG | + | chr1_3:37003735-37003754 | Msa0117050:intron | 25.0% |
| !!! | ACATTGAAAAGTTGATGTTA+AGG | + | chr1_3:37003863-37003882 | Msa0117050:CDS | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | + | chr1_3:37003864-37003883 | Msa0117050:CDS | 25.0% |
| !! | TACACACTAACTTTTCATAT+AGG | - | chr1_3:37004110-37004129 | None:intergenic | 25.0% |
| ! | TCAAAATTTGAACATGTACA+AGG | - | chr1_3:37004209-37004228 | None:intergenic | 25.0% |
| !!! | TCAAATACACTTACTTTTTC+AGG | - | chr1_3:37004408-37004427 | None:intergenic | 25.0% |
| !!! | AAAACGACATTTTGTTTTTC+TGG | - | chr1_3:37004545-37004564 | None:intergenic | 25.0% |
| !! | ATTTGCACAAGATTTTTATC+TGG | - | chr1_3:37004590-37004609 | None:intergenic | 25.0% |
| ! | TATTATTGTAGTGCTATAGA+AGG | + | chr1_3:37004694-37004713 | Msa0117050:intron | 25.0% |
| ! | ATTATTGTAGTGCTATAGAA+GGG | + | chr1_3:37004695-37004714 | Msa0117050:intron | 25.0% |
| TTATTCTTCTCTTTGTGTTG+AGG | - | chr1_3:37001397-37001416 | None:intergenic | 30.0% | |
| ! | TGAGTAATTTTCTCAGTTTG+TGG | - | chr1_3:37001646-37001665 | None:intergenic | 30.0% |
| !!! | TTTTTTCTGTTTTCCCCTAA+AGG | - | chr1_3:37001775-37001794 | None:intergenic | 30.0% |
| ! | TAGAAGCAAAGTCAGTATTT+TGG | + | chr1_3:37001822-37001841 | Msa0117050:intron | 30.0% |
| AGACTGTTAAAAACAAGATC+TGG | + | chr1_3:37001869-37001888 | Msa0117050:intron | 30.0% | |
| GACTGTTAAAAACAAGATCT+GGG | + | chr1_3:37001870-37001889 | Msa0117050:intron | 30.0% | |
| CAGATAAAAGAGTTAGTGTA+TGG | - | chr1_3:37001954-37001973 | None:intergenic | 30.0% | |
| CTATATAACACAGGAACAAT+GGG | + | chr1_3:37001974-37001993 | Msa0117050:intron | 30.0% | |
| ! | CATTTAAAACAAACCTGACA+TGG | + | chr1_3:37002069-37002088 | Msa0117050:CDS | 30.0% |
| AATTTATTGATGCGGAAACA+TGG | + | chr1_3:37002144-37002163 | Msa0117050:CDS | 30.0% | |
| TATTAAGGATCCTTACTTTC+TGG | + | chr1_3:37002175-37002194 | Msa0117050:CDS | 30.0% | |
| TAACAGGAGAAAAGAAATAG+GGG | + | chr1_3:37002276-37002295 | Msa0117050:intron | 30.0% | |
| !! | CTACAATACAAAAGCATTCA+TGG | - | chr1_3:37002715-37002734 | None:intergenic | 30.0% |
| TACTTAATTAAAGCCACTGA+TGG | + | chr1_3:37002793-37002812 | Msa0117050:intron | 30.0% | |
| CTATGTGTAAGTTCAATACT+GGG | - | chr1_3:37002912-37002931 | None:intergenic | 30.0% | |
| ACTATGTGTAAGTTCAATAC+TGG | - | chr1_3:37002913-37002932 | None:intergenic | 30.0% | |
| !! | AAGCCACTGTTTCTATATTA+TGG | + | chr1_3:37002946-37002965 | Msa0117050:intron | 30.0% |
| GAACCATAATATAGAAACAG+TGG | - | chr1_3:37002952-37002971 | None:intergenic | 30.0% | |
| CATATAATTCACACTCTTCT+GGG | - | chr1_3:37003476-37003495 | None:intergenic | 30.0% | |
| ACATATAATTCACACTCTTC+TGG | - | chr1_3:37003477-37003496 | None:intergenic | 30.0% | |
| TTCTAACAGCTGATTATGTA+TGG | - | chr1_3:37003553-37003572 | None:intergenic | 30.0% | |
| CATAATCAGCTGTTAGAAAA+TGG | + | chr1_3:37003555-37003574 | Msa0117050:CDS | 30.0% | |
| AAGATTATCTTCCATCCAAA+AGG | + | chr1_3:37003821-37003840 | Msa0117050:CDS | 30.0% | |
| ! | TTAATTTAAAGCACAGACAG+AGG | - | chr1_3:37004050-37004069 | None:intergenic | 30.0% |
| CATTCTGAATTGTTTATAGC+AGG | + | chr1_3:37004134-37004153 | Msa0117050:intron | 30.0% | |
| !!! | TACACTTACTTTTTCAGGTA+AGG | - | chr1_3:37004403-37004422 | None:intergenic | 30.0% |
| CAATAATAAGCAATTGCCAA+TGG | - | chr1_3:37004520-37004539 | None:intergenic | 30.0% | |
| ! | TTGTCTATTCACCCTCTTTT+CGG | - | chr1_3:37001284-37001303 | None:intergenic | 35.0% |
| AAGAGGGTGAATAGACAAAT+TGG | + | chr1_3:37001286-37001305 | Msa0117050:CDS | 35.0% | |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | - | chr1_3:37001500-37001519 | None:intergenic | 35.0% |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | - | chr1_3:37001500-37001519 | None:intergenic | 35.0% |
| ! | GTAATTTTCTCAGTTTGTGG+AGG | - | chr1_3:37001643-37001662 | None:intergenic | 35.0% |
| AATGGACCAAAAAGCCTTTA+GGG | + | chr1_3:37001758-37001777 | Msa0117050:intron | 35.0% | |
| !! | AAGCAAAGTCAGTATTTTGG+TGG | + | chr1_3:37001825-37001844 | Msa0117050:intron | 35.0% |
| GCTATATAACACAGGAACAA+TGG | + | chr1_3:37001973-37001992 | Msa0117050:intron | 35.0% | |
| AACATGGCAGGAGTTTATTA+AGG | + | chr1_3:37002160-37002179 | Msa0117050:CDS | 35.0% | |
| !! | ATCCTTACTTTCTGGTTTGT+TGG | + | chr1_3:37002183-37002202 | Msa0117050:intron | 35.0% |
| TTCCAACAAACCAGAAAGTA+AGG | - | chr1_3:37002188-37002207 | None:intergenic | 35.0% | |
| AACAGGAGAAAAGAAATAGG+GGG | + | chr1_3:37002277-37002296 | Msa0117050:intron | 35.0% | |
| ! | AAATAGGGGGAAATTGATTC+AGG | + | chr1_3:37002290-37002309 | Msa0117050:CDS | 35.0% |
| AGTTCAATACTGGGATTGAT+TGG | - | chr1_3:37002903-37002922 | None:intergenic | 35.0% | |
| GCTGCTACAATTACAAACAT+TGG | + | chr1_3:37003024-37003043 | Msa0117050:intron | 35.0% | |
| AAGATATCTTTACGTCCTTG+TGG | - | chr1_3:37003129-37003148 | None:intergenic | 35.0% | |
| ACAAGGACGTAAAGATATCT+TGG | + | chr1_3:37003128-37003147 | Msa0117050:CDS | 35.0% | |
| ! | GTGGGAATTAGGCAATATTT+TGG | + | chr1_3:37003207-37003226 | Msa0117050:CDS | 35.0% |
| TTTGGTCCACTTTCTCATTA+TGG | + | chr1_3:37003225-37003244 | Msa0117050:CDS | 35.0% | |
| !! | TTTGCTATTGAAAACAGGTG+AGG | - | chr1_3:37003259-37003278 | None:intergenic | 35.0% |
| CATGAAAGCAGATCTTACTA+AGG | + | chr1_3:37003290-37003309 | Msa0117050:CDS | 35.0% | |
| AGATCTTACTAAGGAGATCA+GGG | + | chr1_3:37003299-37003318 | Msa0117050:CDS | 35.0% | |
| GAGAACATGTTGGGAAATTT+GGG | - | chr1_3:37003374-37003393 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGCAGGTATAT+CGG | - | chr1_3:37003403-37003422 | None:intergenic | 35.0% |
| TCATCATTATCCTCTGGTAT+AGG | - | chr1_3:37003447-37003466 | None:intergenic | 35.0% | |
| TATACCAGAGGATAATGATG+AGG | + | chr1_3:37003446-37003465 | Msa0117050:CDS | 35.0% | |
| AACAGCTGATTATGTATGGT+TGG | - | chr1_3:37003549-37003568 | None:intergenic | 35.0% | |
| TCAGCTGTTAGAAAATGGTA+TGG | + | chr1_3:37003560-37003579 | Msa0117050:CDS | 35.0% | |
| TGTTAGAAAATGGTATGGTG+AGG | + | chr1_3:37003565-37003584 | Msa0117050:CDS | 35.0% | |
| GTTAGAAAATGGTATGGTGA+GGG | + | chr1_3:37003566-37003585 | Msa0117050:CDS | 35.0% | |
| !! | CCATTGAATGAAAGTGTTGA+GGG | - | chr1_3:37003667-37003686 | None:intergenic | 35.0% |
| ! | TCTGCGTCTAGTTTCTAATA+AGG | + | chr1_3:37003698-37003717 | Msa0117050:CDS | 35.0% |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | - | chr1_3:37003839-37003858 | None:intergenic | 35.0% |
| GCTCCATAATATCTCTTGTT+GGG | - | chr1_3:37003948-37003967 | None:intergenic | 35.0% | |
| AGCTCCATAATATCTCTTGT+TGG | - | chr1_3:37003949-37003968 | None:intergenic | 35.0% | |
| ! | ACAGACAGAGGCATAAATAA+GGG | - | chr1_3:37004038-37004057 | None:intergenic | 35.0% |
| CAACAAACAAACAAACAGCA+AGG | - | chr1_3:37004186-37004205 | None:intergenic | 35.0% | |
| TATTTCCCAATTGAGTACAG+AGG | - | chr1_3:37004264-37004283 | None:intergenic | 35.0% | |
| TTGGGAAATAGTGATGTGTA+TGG | + | chr1_3:37004274-37004293 | Msa0117050:CDS | 35.0% | |
| !! | TGATCCATTTTTCATTCACG+CGG | + | chr1_3:37004303-37004322 | Msa0117050:CDS | 35.0% |
| ! | TTTTCCGCGTGAATGAAAAA+TGG | - | chr1_3:37004310-37004329 | None:intergenic | 35.0% |
| TGAGCATTCTTATCGCTTTG+TGG | - | chr1_3:37001256-37001275 | None:intergenic | 40.0% | |
| ATAAGCAGCCTACCAATAAG+AGG | + | chr1_3:37001413-37001432 | Msa0117050:CDS | 40.0% | |
| TAAGCAGCCTACCAATAAGA+GGG | + | chr1_3:37001414-37001433 | Msa0117050:CDS | 40.0% | |
| CTATTCACCCTCTTATTGGT+AGG | - | chr1_3:37001424-37001443 | None:intergenic | 40.0% | |
| GACTCTATTCACCCTCTTAT+TGG | - | chr1_3:37001428-37001447 | None:intergenic | 40.0% | |
| AAGAGGGTGAATAGAGTCAT+TGG | + | chr1_3:37001430-37001449 | Msa0117050:CDS | 40.0% | |
| !!! | GTGTTGACTCTATTTTCGGT+AGG | - | chr1_3:37001496-37001515 | None:intergenic | 40.0% |
| ! | AGTTAGAGGTGCAACTTGAA+TGG | + | chr1_3:37001681-37001700 | Msa0117050:intron | 40.0% |
| TCCATTGATCGAAGTCAATC+GGG | - | chr1_3:37001744-37001763 | None:intergenic | 40.0% | |
| GTCCATTGATCGAAGTCAAT+CGG | - | chr1_3:37001745-37001764 | None:intergenic | 40.0% | |
| CAATGGACCAAAAAGCCTTT+AGG | + | chr1_3:37001757-37001776 | Msa0117050:intron | 40.0% | |
| ATGGACCAAAAAGCCTTTAG+GGG | + | chr1_3:37001759-37001778 | Msa0117050:intron | 40.0% | |
| ! | GTTTTCCCCTAAAGGCTTTT+TGG | - | chr1_3:37001767-37001786 | None:intergenic | 40.0% |
| ! | ACTGACTTTGCTTCTAGCAA+TGG | - | chr1_3:37001818-37001837 | None:intergenic | 40.0% |
| CAAGATCTGGGAAGATATCA+TGG | + | chr1_3:37001882-37001901 | Msa0117050:intron | 40.0% | |
| TTGAGTGACAAATCTCCTCT+TGG | + | chr1_3:37002113-37002132 | Msa0117050:CDS | 40.0% | |
| GTCAGAAGAAACACGTTGTA+TGG | + | chr1_3:37002500-37002519 | Msa0117050:CDS | 40.0% | |
| AGCAGCACAAACTAAAACAG+TGG | - | chr1_3:37003010-37003029 | None:intergenic | 40.0% | |
| AGGACGTAAAGATATCTTGG+CGG | + | chr1_3:37003131-37003150 | Msa0117050:CDS | 40.0% | |
| ATTGAAAACAGGTGAGGAAG+AGG | - | chr1_3:37003253-37003272 | None:intergenic | 40.0% | |
| CAGATCTTACTAAGGAGATC+AGG | + | chr1_3:37003298-37003317 | Msa0117050:CDS | 40.0% | |
| GCGGGATTTATCATCTATTC+CGG | + | chr1_3:37003332-37003351 | Msa0117050:CDS | 40.0% | |
| GGAGAACATGTTGGGAAATT+TGG | - | chr1_3:37003375-37003394 | None:intergenic | 40.0% | |
| GATATACCTGCAAGCACAAA+AGG | + | chr1_3:37003402-37003421 | Msa0117050:CDS | 40.0% | |
| TCATTATCCTCTGGTATAGG+CGG | - | chr1_3:37003444-37003463 | None:intergenic | 40.0% | |
| ATGTCCTCATCATTATCCTC+TGG | - | chr1_3:37003453-37003472 | None:intergenic | 40.0% | |
| CCCTCAACACTTTCATTCAA+TGG | + | chr1_3:37003664-37003683 | Msa0117050:CDS | 40.0% | |
| !! | GCCATTGAATGAAAGTGTTG+AGG | - | chr1_3:37003668-37003687 | None:intergenic | 40.0% |
| ! | ACTAGACGCAGAAGTCTTTT+TGG | - | chr1_3:37003690-37003709 | None:intergenic | 40.0% |
| ACATCCTGTGAAGTTCGATT+TGG | + | chr1_3:37003900-37003919 | Msa0117050:CDS | 40.0% | |
| TCATCCAAATCGAACTTCAC+AGG | - | chr1_3:37003907-37003926 | None:intergenic | 40.0% | |
| CCATAATATCTCTTGTTGGG+AGG | - | chr1_3:37003945-37003964 | None:intergenic | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | + | chr1_3:37003942-37003961 | Msa0117050:CDS | 40.0% | |
| CCTCACGATTCTACGAATAT+GGG | + | chr1_3:37003993-37004012 | Msa0117050:CDS | 40.0% | |
| ! | CACAGACAGAGGCATAAATA+AGG | - | chr1_3:37004039-37004058 | None:intergenic | 40.0% |
| !!! | TGTCGTTTTCCTATGTTCGA+TGG | + | chr1_3:37004556-37004575 | Msa0117050:CDS | 40.0% |
| !! | GTCGTTTTCCTATGTTCGAT+GGG | + | chr1_3:37004557-37004576 | Msa0117050:CDS | 40.0% |
| ! | TTTTCCTATGTTCGATGGGT+TGG | + | chr1_3:37004561-37004580 | Msa0117050:CDS | 40.0% |
| ! | GAAGGGTATAACAAGTTGAG+TGG | + | chr1_3:37004712-37004731 | Msa0117050:CDS | 40.0% |
| GCATTCTTATCGCTTTGTGG+AGG | - | chr1_3:37001253-37001272 | None:intergenic | 45.0% | |
| ! | GCATTCTTCTCGCTTTGTTG+AGG | - | chr1_3:37001325-37001344 | None:intergenic | 45.0% |
| ATGCTCAACCTGCCAAAAAG+AGG | + | chr1_3:37001341-37001360 | Msa0117050:CDS | 45.0% | |
| TGCTCAACCTGCCAAAAAGA+GGG | + | chr1_3:37001342-37001361 | Msa0117050:CDS | 45.0% | |
| ! | GACTTTGCTCACCCTCTTTT+TGG | - | chr1_3:37001356-37001375 | None:intergenic | 45.0% |
| AAGAGGGTGAGCAAAGTCAT+TGG | + | chr1_3:37001358-37001377 | Msa0117050:CDS | 45.0% | |
| TGAGCGTTCATCTCACTTTG+TGG | - | chr1_3:37001472-37001491 | None:intergenic | 45.0% | |
| ACAAAGTGAGATGAACGCTC+AGG | + | chr1_3:37001471-37001490 | Msa0117050:CDS | 45.0% | |
| TGAGCGTTCATCTCAGTTTG+TGG | - | chr1_3:37001556-37001575 | None:intergenic | 45.0% | |
| ! | CCTCTAACTCTCTTTCTGGT+AGG | - | chr1_3:37001670-37001689 | None:intergenic | 45.0% |
| CCTACCAGAAAGAGAGTTAG+AGG | + | chr1_3:37001667-37001686 | Msa0117050:intron | 45.0% | |
| TGCACCTCTAACTCTCTTTC+TGG | - | chr1_3:37001674-37001693 | None:intergenic | 45.0% | |
| ! | TCCCGATTGACTTCGATCAA+TGG | + | chr1_3:37001740-37001759 | Msa0117050:intron | 45.0% |
| TATCCTATGCGTGTGAACGT+TGG | + | chr1_3:37002042-37002061 | Msa0117050:CDS | 45.0% | |
| TATTGATGCGGAAACATGGC+AGG | + | chr1_3:37002148-37002167 | Msa0117050:CDS | 45.0% | |
| !! | ACTTCTCATGGCGTTTTGGT+GGG | - | chr1_3:37002443-37002462 | None:intergenic | 45.0% |
| ! | ATCCACTTCTCATGGCGTTT+TGG | - | chr1_3:37002447-37002466 | None:intergenic | 45.0% |
| ACGCCATGAGAAGTGGATAA+AGG | + | chr1_3:37002449-37002468 | Msa0117050:CDS | 45.0% | |
| GTGCCTTTATCCACTTCTCA+TGG | - | chr1_3:37002455-37002474 | None:intergenic | 45.0% | |
| AAGGCACGACAAAAGTCATC+AGG | + | chr1_3:37002468-37002487 | Msa0117050:CDS | 45.0% | |
| TGTGTACATCTCACCATCAG+TGG | - | chr1_3:37002809-37002828 | None:intergenic | 45.0% | |
| CAAGGACTCTTTGTTCCACA+AGG | + | chr1_3:37003111-37003130 | Msa0117050:CDS | 45.0% | |
| ! | GAGGCACCATAATGAGAAAG+TGG | - | chr1_3:37003234-37003253 | None:intergenic | 45.0% |
| AGATCAGGGATCAAGTGATG+CGG | + | chr1_3:37003313-37003332 | Msa0117050:CDS | 45.0% | |
| GGGAAATGTTGAGAGAAAGC+CGG | - | chr1_3:37003354-37003373 | None:intergenic | 45.0% | |
| CGGTACTAGGAGAACATGTT+GGG | - | chr1_3:37003383-37003402 | None:intergenic | 45.0% | |
| TCGGTACTAGGAGAACATGT+TGG | - | chr1_3:37003384-37003403 | None:intergenic | 45.0% | |
| CTTGCAGGTATATCGGTACT+AGG | - | chr1_3:37003396-37003415 | None:intergenic | 45.0% | |
| ! | CAACTACCTTTTGTGCTTGC+AGG | - | chr1_3:37003411-37003430 | None:intergenic | 45.0% |
| AGAAAATGGTATGGTGAGGG+TGG | + | chr1_3:37003569-37003588 | Msa0117050:CDS | 45.0% | |
| ACCTTTGTCACCTCATCTGT+GGG | - | chr1_3:37003636-37003655 | None:intergenic | 45.0% | |
| AACCTTTGTCACCTCATCTG+TGG | - | chr1_3:37003637-37003656 | None:intergenic | 45.0% | |
| ACAGATGAGGTGACAAAGGT+TGG | + | chr1_3:37003636-37003655 | Msa0117050:CDS | 45.0% | |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | - | chr1_3:37003835-37003854 | None:intergenic | 45.0% |
| GCCTCACGATTCTACGAATA+TGG | + | chr1_3:37003992-37004011 | Msa0117050:CDS | 45.0% | |
| CCCATATTCGTAGAATCGTG+AGG | - | chr1_3:37003996-37004015 | None:intergenic | 45.0% | |
| CACGATTCTACGAATATGGG+TGG | + | chr1_3:37003996-37004015 | Msa0117050:CDS | 45.0% | |
| GAACGCCTCTGTACTCAATT+GGG | + | chr1_3:37004256-37004275 | Msa0117050:CDS | 45.0% | |
| TATGACCGCAAAGATGTTCG+AGG | + | chr1_3:37004354-37004373 | Msa0117050:CDS | 45.0% | |
| GCTATCCTCGAACATCTTTG+CGG | - | chr1_3:37004362-37004381 | None:intergenic | 45.0% | |
| CTTTCCAATGTAGTCGCCAT+TGG | + | chr1_3:37004501-37004520 | Msa0117050:intron | 45.0% | |
| ATTGCCAATGGCGACTACAT+TGG | - | chr1_3:37004508-37004527 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGTGGTGTCAGAA+AGG | + | chr1_3:37004723-37004742 | Msa0117050:CDS | 45.0% |
| ! | CTATTCACCCTCTTTTCGGC+AGG | - | chr1_3:37001280-37001299 | None:intergenic | 50.0% |
| !! | TTGCTCACCCTCTTTTTGGC+AGG | - | chr1_3:37001352-37001371 | None:intergenic | 50.0% |
| GCGTTCATCTCACTTTGTGG+AGG | - | chr1_3:37001469-37001488 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | + | chr1_3:37001511-37001530 | Msa0117050:CDS | 50.0% | |
| GTTTGTGGAGGACCTGATTG+TGG | - | chr1_3:37001541-37001560 | None:intergenic | 50.0% | |
| GCGTTCATCTCAGTTTGTGG+AGG | - | chr1_3:37001553-37001572 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | + | chr1_3:37001511-37001530 | Msa0117050:CDS | 50.0% | |
| GGTCCTCCACAAACTGAGAA+AGG | + | chr1_3:37001616-37001635 | Msa0117050:CDS | 50.0% | |
| GGACCTTTCTCAGTTTGTGG+AGG | - | chr1_3:37001622-37001641 | None:intergenic | 50.0% | |
| GGAGGACCTTTCTCAGTTTG+TGG | - | chr1_3:37001625-37001644 | None:intergenic | 50.0% | |
| CTATGCGTGTGAACGTTGGA+GGG | + | chr1_3:37002046-37002065 | Msa0117050:CDS | 50.0% | |
| CTCCACGAGACAAGTTGTGA+GGG | - | chr1_3:37002329-37002348 | None:intergenic | 50.0% | |
| !! | CTTCTCATGGCGTTTTGGTG+GGG | - | chr1_3:37002442-37002461 | None:intergenic | 50.0% |
| ! | CACTTCTCATGGCGTTTTGG+TGG | - | chr1_3:37002444-37002463 | None:intergenic | 50.0% |
| CACCAAAACGCCATGAGAAG+TGG | + | chr1_3:37002442-37002461 | Msa0117050:CDS | 50.0% | |
| GATATCTTGGCGGAAGCGAT+CGG | + | chr1_3:37003141-37003160 | Msa0117050:CDS | 50.0% | |
| GATCAGGGATCAAGTGATGC+GGG | + | chr1_3:37003314-37003333 | Msa0117050:CDS | 50.0% | |
| GGAACGCCTCTGTACTCAAT+TGG | + | chr1_3:37004255-37004274 | Msa0117050:CDS | 50.0% | |
| GCTTCCAACCCATCGAACAT+AGG | - | chr1_3:37004568-37004587 | None:intergenic | 50.0% | |
| ! | TGGTGTCAGAAAGGCGAGAA+AGG | + | chr1_3:37004732-37004751 | Msa0117050:CDS | 50.0% |
| GAAAGGCGAGAAAGGCAACA+TGG | + | chr1_3:37004740-37004759 | Msa0117050:CDS | 50.0% | |
| ATGCTCAGCCTGCCGAAAAG+AGG | + | chr1_3:37001269-37001288 | Msa0117050:CDS | 55.0% | |
| TGCTCAGCCTGCCGAAAAGA+GGG | + | chr1_3:37001270-37001289 | Msa0117050:CDS | 55.0% | |
| GCATCAGGTCCTCCACAATC+AGG | + | chr1_3:37001526-37001545 | Msa0117050:CDS | 55.0% | |
| TGTGGAGGACCTGATTGTGG+AGG | - | chr1_3:37001538-37001557 | None:intergenic | 55.0% | |
| CCTCCAACGTTCACACGCAT+AGG | - | chr1_3:37002048-37002067 | None:intergenic | 55.0% | |
| CCTATGCGTGTGAACGTTGG+AGG | + | chr1_3:37002045-37002064 | Msa0117050:CDS | 55.0% | |
| TGCCCTCACAACTTGTCTCG+TGG | + | chr1_3:37002324-37002343 | Msa0117050:CDS | 55.0% | |
| CCTCCACGAGACAAGTTGTG+AGG | - | chr1_3:37002330-37002349 | None:intergenic | 55.0% | |
| CCTCACAACTTGTCTCGTGG+AGG | + | chr1_3:37002327-37002346 | Msa0117050:CDS | 55.0% | |
| !! | TCATGGCGTTTTGGTGGGGA+TGG | - | chr1_3:37002438-37002457 | None:intergenic | 55.0% |
| ATCGGACAACCTGAACACCC+TGG | + | chr1_3:37003159-37003178 | Msa0117050:CDS | 55.0% | |
| ! | TGGGTGGAGGTGTGGGAATT+AGG | + | chr1_3:37003196-37003215 | Msa0117050:CDS | 55.0% |
| TCACCTCATCTGTGGGCATG+GGG | - | chr1_3:37003629-37003648 | None:intergenic | 55.0% | |
| GTCACCTCATCTGTGGGCAT+GGG | - | chr1_3:37003630-37003649 | None:intergenic | 55.0% | |
| TGTCACCTCATCTGTGGGCA+TGG | - | chr1_3:37003631-37003650 | None:intergenic | 55.0% | |
| GCCCACAGATGAGGTGACAA+AGG | + | chr1_3:37003632-37003651 | Msa0117050:CDS | 55.0% | |
| !! | TGGCGTTTTGGTGGGGATGG+AGG | - | chr1_3:37002435-37002454 | None:intergenic | 60.0% |
| ! | CGAACACGTCCAGGGTGTTC+AGG | - | chr1_3:37003171-37003190 | None:intergenic | 60.0% |
| CCACAGCACGAACACGTCCA+GGG | - | chr1_3:37003179-37003198 | None:intergenic | 60.0% | |
| CCTGGACGTGTTCGTGCTGT+GGG | + | chr1_3:37003177-37003196 | Msa0117050:CDS | 60.0% | |
| TGCAGCACCGCCTATACCAG+AGG | + | chr1_3:37003434-37003453 | Msa0117050:CDS | 60.0% | |
| AGTCCCCATGCCCACAGATG+AGG | + | chr1_3:37003623-37003642 | Msa0117050:CDS | 60.0% | |
| CCCTGGACGTGTTCGTGCTG+TGG | + | chr1_3:37003176-37003195 | Msa0117050:CDS | 65.0% | |
| CCCACAGCACGAACACGTCC+AGG | - | chr1_3:37003180-37003199 | None:intergenic | 65.0% | |
| GGACGTGTTCGTGCTGTGGG+TGG | + | chr1_3:37003180-37003199 | Msa0117050:CDS | 65.0% | |
| CGTGTTCGTGCTGTGGGTGG+AGG | + | chr1_3:37003183-37003202 | Msa0117050:CDS | 65.0% | |
| TCGTGCTGTGGGTGGAGGTG+TGG | + | chr1_3:37003188-37003207 | Msa0117050:CDS | 65.0% | |
| ! | CGTGCTGTGGGTGGAGGTGT+GGG | + | chr1_3:37003189-37003208 | Msa0117050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 37001232 | 37004783 | 37001232 | ID=Msa0117050;Name=Msa0117050 |
| chr1_3 | mRNA | 37001232 | 37004783 | 37001232 | ID=Msa0117050-mRNA-1;Parent=Msa0117050;Name=Msa0117050-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|1|1|8|0|703 |
| chr1_3 | exon | 37001232 | 37001681 | 37001232 | ID=Msa0117050-mRNA-1:exon:11833;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37001987 | 37002196 | 37001987 | ID=Msa0117050-mRNA-1:exon:11834;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37002282 | 37002533 | 37002282 | ID=Msa0117050-mRNA-1:exon:11835;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37003087 | 37003719 | 37003087 | ID=Msa0117050-mRNA-1:exon:11836;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37003802 | 37004019 | 37003802 | ID=Msa0117050-mRNA-1:exon:11837;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37004249 | 37004413 | 37004249 | ID=Msa0117050-mRNA-1:exon:11838;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37004514 | 37004618 | 37004514 | ID=Msa0117050-mRNA-1:exon:11839;Parent=Msa0117050-mRNA-1 |
| chr1_3 | exon | 37004705 | 37004783 | 37004705 | ID=Msa0117050-mRNA-1:exon:11840;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37001232 | 37001681 | 37001232 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37001987 | 37002196 | 37001987 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37002282 | 37002533 | 37002282 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37003087 | 37003719 | 37003087 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37003802 | 37004019 | 37003802 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37004249 | 37004413 | 37004249 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37004514 | 37004618 | 37004514 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| chr1_3 | CDS | 37004705 | 37004783 | 37004705 | ID=Msa0117050-mRNA-1:cds;Parent=Msa0117050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
