Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024080 | sp|Q9FNY0|E2FA_ARATH | 56.930 | 469 | 158 | 12 | 16 | 458 | 30 | 480 | 9.83e-171 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0024080 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024080 | Msa0119870 | 0.848204 | 7.113867e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024080 | MtrunA17_Chr1g0177351 | 98.491 | 464 | 6 | 1 | 1 | 464 | 1 | 463 | 0.0 | 937 |
| Msa0024080 | MtrunA17_Chr4g0025881 | 59.459 | 444 | 168 | 8 | 25 | 461 | 19 | 457 | 1.20e-175 | 500 |
| Msa0024080 | MtrunA17_Chr3g0142581 | 48.986 | 296 | 137 | 4 | 127 | 422 | 89 | 370 | 2.77e-84 | 264 |
| Msa0024080 | MtrunA17_Chr4g0059551 | 44.776 | 67 | 37 | 0 | 143 | 209 | 17 | 83 | 4.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024080 | AT2G36010.1 | 57.173 | 467 | 158 | 11 | 16 | 458 | 30 | 478 | 9.07e-174 | 496 |
| Msa0024080 | AT2G36010.3 | 56.930 | 469 | 158 | 12 | 16 | 458 | 30 | 480 | 1.00e-171 | 491 |
| Msa0024080 | AT5G22220.2 | 53.092 | 469 | 179 | 14 | 22 | 461 | 10 | 466 | 2.38e-143 | 419 |
| Msa0024080 | AT5G22220.3 | 52.790 | 466 | 182 | 13 | 22 | 461 | 10 | 463 | 1.29e-140 | 412 |
| Msa0024080 | AT2G36010.2 | 46.525 | 518 | 164 | 14 | 16 | 458 | 30 | 509 | 1.84e-134 | 397 |
| Msa0024080 | AT1G47870.2 | 47.319 | 317 | 117 | 7 | 105 | 420 | 123 | 390 | 2.06e-80 | 255 |
| Msa0024080 | AT1G47870.1 | 47.319 | 317 | 117 | 7 | 105 | 420 | 124 | 391 | 2.26e-80 | 254 |
| Msa0024080 | AT5G14960.1 | 41.304 | 92 | 49 | 1 | 136 | 227 | 6 | 92 | 1.78e-12 | 68.9 |
| Msa0024080 | AT3G48160.2 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.82e-11 | 65.1 |
| Msa0024080 | AT3G48160.1 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.92e-11 | 65.1 |
Find 185 sgRNAs with CRISPR-Local
Find 410 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGCTGCTGTTGATTCT+AGG | 0.183439 | 1_1:+46205450 | Msa0024080:CDS |
| GAAAATGATCGGAGAGAAAT+TGG | 0.216241 | 1_1:-46205256 | None:intergenic |
| TGTAGAATGATGCTGATTAT+TGG | 0.219679 | 1_1:+46210016 | Msa0024080:intron |
| AGGACATGATTTGCCTTCTT+TGG | 0.234385 | 1_1:-46206728 | None:intergenic |
| TTACCTCTTGCTTCAAGTTC+AGG | 0.236533 | 1_1:+46209660 | Msa0024080:CDS |
| GAGAAATTTGAAGAGATTAA+TGG | 0.237066 | 1_1:+46209618 | Msa0024080:CDS |
| TATCACTAAGTTAGAAAGTA+TGG | 0.250190 | 1_1:+46210336 | Msa0024080:three_prime_UTR |
| AATCAAAATCATCTCTGATT+AGG | 0.254900 | 1_1:-46210306 | None:intergenic |
| TGTGACCGAGGAAGATATTA+AGG | 0.256644 | 1_1:+46209045 | Msa0024080:CDS |
| GTGCACCCTTGAAGTTGTTT+GGG | 0.275713 | 1_1:-46210736 | None:intergenic |
| AGTGCACCCTTGAAGTTGTT+TGG | 0.292043 | 1_1:-46210737 | None:intergenic |
| CAATTGATGTCTACCTTATC+AGG | 0.299411 | 1_1:+46209430 | Msa0024080:CDS |
| ATATGACATAACTAATGTTT+TGG | 0.312982 | 1_1:+46207240 | Msa0024080:CDS |
| ATCAAAATCATCTCTGATTA+GGG | 0.322568 | 1_1:-46210305 | None:intergenic |
| AATGAGGAAGGGAGGGAAGA+AGG | 0.344191 | 1_1:-46205167 | None:intergenic |
| TATCTTCCTCGGTCACAAAA+AGG | 0.345600 | 1_1:-46209039 | None:intergenic |
| CACTGCTGTGTTGCGTAGTC+AGG | 0.352372 | 1_1:+46211031 | Msa0024080:three_prime_UTR |
| ATGAGGAAGGGAGGGAAGAA+GGG | 0.354112 | 1_1:-46205166 | None:intergenic |
| ACTATGCCACACTTCAAATA+TGG | 0.358238 | 1_1:-46210661 | None:intergenic |
| TAAGGGCCTACCTTGCTTCC+AGG | 0.358343 | 1_1:+46209063 | Msa0024080:CDS |
| AGGAAGGGAGGGAAGAAGGG+AGG | 0.362461 | 1_1:-46205163 | None:intergenic |
| AAAACTCCTTTGTCTGCAAA+AGG | 0.367786 | 1_1:+46206679 | Msa0024080:CDS |
| TGGTGATATCTCTTTGCTTA+AGG | 0.368188 | 1_1:+46207462 | Msa0024080:CDS |
| TGAATGATAATTGAATAATA+AGG | 0.369374 | 1_1:-46210782 | None:intergenic |
| CGACGATCAGTATTTGTATC+TGG | 0.377681 | 1_1:+46210626 | Msa0024080:three_prime_UTR |
| GAAGCAAGAGGTAAGCTTGC+GGG | 0.386616 | 1_1:-46209651 | None:intergenic |
| CTGATAAGGTAGACATCAAT+TGG | 0.387115 | 1_1:-46209429 | None:intergenic |
| TTCATTACATTAGTGTATCC+AGG | 0.390006 | 1_1:-46206646 | None:intergenic |
| ATATCAAGAACAGAATATAT+TGG | 0.392044 | 1_1:+46207287 | Msa0024080:CDS |
| CCAGCAGGAGTGAGCGGAGA+AGG | 0.392492 | 1_1:-46206883 | None:intergenic |
| CCTCAGCACGCTTGAGCAAA+TGG | 0.395797 | 1_1:-46207069 | None:intergenic |
| TCCAGCGTTACCGGACATTA+CGG | 0.398218 | 1_1:-46205312 | None:intergenic |
| TTCCCTAAACTTACTTCCTC+AGG | 0.398706 | 1_1:-46209270 | None:intergenic |
| TGTGTAAGCCTTCGTGCAAT+AGG | 0.398763 | 1_1:-46210906 | None:intergenic |
| AGGGTGCACTGGATATTGTT+AGG | 0.399664 | 1_1:+46210750 | Msa0024080:three_prime_UTR |
| TACCTCTTGCTTCAAGTTCA+GGG | 0.401939 | 1_1:+46209661 | Msa0024080:CDS |
| GTCGGAAGGTCCAGCGTTAC+CGG | 0.403176 | 1_1:-46205321 | None:intergenic |
| AATGTTTCACAAGAGTTTGC+TGG | 0.409766 | 1_1:+46209783 | Msa0024080:CDS |
| AAAATGATCGGAGAGAAATT+GGG | 0.415372 | 1_1:-46205255 | None:intergenic |
| AGTAAATCACCGACTCTCTT+AGG | 0.417798 | 1_1:+46210481 | Msa0024080:three_prime_UTR |
| GTCAGGGACATTCGATCAAC+AGG | 0.420494 | 1_1:+46211048 | Msa0024080:three_prime_UTR |
| TTCTGACCAGCATTTGAGAT+AGG | 0.420653 | 1_1:-46206757 | None:intergenic |
| GGAAGTTGACAACCTTTCTC+TGG | 0.430841 | 1_1:+46208741 | Msa0024080:CDS |
| TAAAGCAGCAGAAACTTTGC+AGG | 0.430868 | 1_1:+46207111 | Msa0024080:CDS |
| AAACTCCTTTGTCTGCAAAA+GGG | 0.431635 | 1_1:+46206680 | Msa0024080:CDS |
| GCCGCCGTTGAAGCGTCATC+TGG | 0.433324 | 1_1:+46205379 | Msa0024080:CDS |
| ATCTGTGCTCCGGTCGGCAT+CGG | 0.435761 | 1_1:-46205353 | None:intergenic |
| AATCGGAGTGGAAACGGAAA+TGG | 0.441749 | 1_1:-46205278 | None:intergenic |
| GGAGATATAGAATCATTCTA+AGG | 0.456891 | 1_1:+46209394 | Msa0024080:CDS |
| CTCGAGAGCATTTCAAAGTC+AGG | 0.458107 | 1_1:-46210231 | None:intergenic |
| TGTCGTTATGACAGTTCCTT+AGG | 0.460009 | 1_1:+46206910 | Msa0024080:CDS |
| TCCTTTCCACTGCATTCAGC+AGG | 0.460324 | 1_1:-46209714 | None:intergenic |
| GTGACCGAGGAAGATATTAA+GGG | 0.460410 | 1_1:+46209046 | Msa0024080:CDS |
| GCATAACAGCTAATGTTGAT+TGG | 0.461803 | 1_1:+46210187 | Msa0024080:intron |
| GTTATCATCCTCTGTATTGA+GGG | 0.462368 | 1_1:+46210358 | Msa0024080:three_prime_UTR |
| TTACGGTTACGGTGGAGAAT+CGG | 0.466832 | 1_1:-46205295 | None:intergenic |
| CCTTCTCCGCTCACTCCTGC+TGG | 0.469787 | 1_1:+46206883 | Msa0024080:CDS |
| GCAAGTAGTTATACCTGATA+AGG | 0.470864 | 1_1:-46209443 | None:intergenic |
| ATGTTTCACAAGAGTTTGCT+GGG | 0.474909 | 1_1:+46209784 | Msa0024080:CDS |
| GGAAGGGAGGGAAGAAGGGA+GGG | 0.475986 | 1_1:-46205162 | None:intergenic |
| TGCCGACCGGAGCACAGATT+CGG | 0.476300 | 1_1:+46205357 | Msa0024080:CDS |
| AAGAGAGAAGAAAATGAGGA+AGG | 0.476565 | 1_1:-46205179 | None:intergenic |
| GCTTGAAATCATATAGCAAA+TGG | 0.476786 | 1_1:-46210971 | None:intergenic |
| ATCATTCTAAGGAGCACAAT+GGG | 0.480097 | 1_1:+46209405 | Msa0024080:CDS |
| GGGGAAGGGCAAACAAGTCA+AGG | 0.482335 | 1_1:+46206701 | Msa0024080:CDS |
| AAACTTACTTCCTCAGGATC+AGG | 0.482688 | 1_1:-46209264 | None:intergenic |
| TACTCATCAGTCGGTGCAAA+CGG | 0.485816 | 1_1:-46205422 | None:intergenic |
| AGAAGAAAATGAGGAAGGGA+GGG | 0.485887 | 1_1:-46205174 | None:intergenic |
| GTGGAGAATCGGAGTGGAAA+CGG | 0.485991 | 1_1:-46205284 | None:intergenic |
| GCTGACCCCAAACAACTTCA+AGG | 0.487739 | 1_1:+46210730 | Msa0024080:three_prime_UTR |
| TGAGCAACAAGTGACAGAAA+TGG | 0.489280 | 1_1:+46209689 | Msa0024080:CDS |
| GTCTCTGCTCTTCCAGAGAA+AGG | 0.490737 | 1_1:-46208753 | None:intergenic |
| AGAGAAGAGAGAAGAAAATG+AGG | 0.496530 | 1_1:-46205183 | None:intergenic |
| GAGAAGAAAATGAGGAAGGG+AGG | 0.496878 | 1_1:-46205175 | None:intergenic |
| GGTTATCATCCTCTGTATTG+AGG | 0.501922 | 1_1:+46210357 | Msa0024080:three_prime_UTR |
| AGTCCCGGCGATGGAGTTTG+TGG | 0.503718 | 1_1:-46210255 | None:intergenic |
| AGCCGTTATTGTTAGATCTC+CGG | 0.504106 | 1_1:+46205496 | Msa0024080:CDS |
| GTTTCGAAAGCATCTGAGGA+TGG | 0.506163 | 1_1:+46210946 | Msa0024080:three_prime_UTR |
| CCAGCATTTGAGATAGGTGT+TGG | 0.506282 | 1_1:-46206751 | None:intergenic |
| AACTCCTTTGTCTGCAAAAG+GGG | 0.506592 | 1_1:+46206681 | Msa0024080:CDS |
| GGAATTGAATCTTCTACGCC+TGG | 0.513959 | 1_1:+46207430 | Msa0024080:CDS |
| AAGGTCATAAAGCGGAAGAA+TGG | 0.515250 | 1_1:+46206580 | Msa0024080:intron |
| AACTCCATCGCCGGGACTTG+CGG | 0.515372 | 1_1:+46210260 | Msa0024080:CDS |
| AAACAACTTCAAGGGTGCAC+TGG | 0.515506 | 1_1:+46210739 | Msa0024080:three_prime_UTR |
| AGAGAGAAGAAAATGAGGAA+GGG | 0.520744 | 1_1:-46205178 | None:intergenic |
| CAGCAGGAGTGAGCGGAGAA+GGG | 0.521252 | 1_1:-46206882 | None:intergenic |
| TGAGAAGAGAGCAGAGCTTG+AGG | 0.521585 | 1_1:-46209744 | None:intergenic |
| CGTGGCTCGCCGATGCCGAC+CGG | 0.525876 | 1_1:+46205344 | Msa0024080:CDS |
| GGCCGAATCTGTGCTCCGGT+CGG | 0.529279 | 1_1:-46205359 | None:intergenic |
| AGTCGGTGCAAACGGTGGCT+TGG | 0.531462 | 1_1:-46205414 | None:intergenic |
| CGGCATCGGCGAGCCACGGT+CGG | 0.533060 | 1_1:-46205339 | None:intergenic |
| AAATGATCGGAGAGAAATTG+GGG | 0.534132 | 1_1:-46205254 | None:intergenic |
| GATGGTGCTTCCGCAAGTCC+CGG | 0.535364 | 1_1:-46210270 | None:intergenic |
| AGGCCACAAACTCCATCGCC+GGG | 0.535755 | 1_1:+46210252 | Msa0024080:CDS |
| AAGTCAAGGGCATCCAAAGA+AGG | 0.536537 | 1_1:+46206715 | Msa0024080:CDS |
| GCTTCCGCAAGTCCCGGCGA+TGG | 0.539022 | 1_1:-46210264 | None:intergenic |
| CGGTCGGCATCGGCGAGCCA+CGG | 0.539391 | 1_1:-46205343 | None:intergenic |
| ACCGTAATGTCCGGTAACGC+TGG | 0.543022 | 1_1:+46205311 | Msa0024080:exon |
| CACCGGAGATCTAACAATAA+CGG | 0.545488 | 1_1:-46205498 | None:intergenic |
| ATCGGCGAGCCACGGTCGGA+AGG | 0.546657 | 1_1:-46205335 | None:intergenic |
| CTATACTATAGGTGCAAAAG+AGG | 0.547054 | 1_1:+46207212 | Msa0024080:intron |
| GAGGCCACAAACTCCATCGC+CGG | 0.547101 | 1_1:+46210251 | Msa0024080:CDS |
| AAGCAAGAGGTAAGCTTGCG+GGG | 0.551818 | 1_1:-46209650 | None:intergenic |
| AGCAGGAGTGAGCGGAGAAG+GGG | 0.552395 | 1_1:-46206881 | None:intergenic |
| TTGCTCAAGCGTGCTGAGGA+TGG | 0.554722 | 1_1:+46207073 | Msa0024080:CDS |
| CAAAAGTCAAGTAACAGCCC+TGG | 0.555813 | 1_1:+46206628 | Msa0024080:CDS |
| TATTTGAAGTGTGGCATAGT+GGG | 0.556790 | 1_1:+46210664 | Msa0024080:three_prime_UTR |
| TGCACCCTTGAAGTTGTTTG+GGG | 0.558626 | 1_1:-46210735 | None:intergenic |
| ATCTTCTACGCCTGGTAATG+TGG | 0.558876 | 1_1:+46207438 | Msa0024080:CDS |
| AGAGACTAGATGATCAGATA+AGG | 0.559999 | 1_1:+46208770 | Msa0024080:CDS |
| CGGCGGCCGAATCTGTGCTC+CGG | 0.564361 | 1_1:-46205363 | None:intergenic |
| TCATAACGACAGCTACCAGC+AGG | 0.570121 | 1_1:-46206898 | None:intergenic |
| TTTGTTTCGGATAGATGTGG+AGG | 0.571007 | 1_1:-46205136 | None:intergenic |
| TAGGCCCTTAATATCTTCCT+CGG | 0.571156 | 1_1:-46209050 | None:intergenic |
| CCAACACCTATCTCAAATGC+TGG | 0.572738 | 1_1:+46206751 | Msa0024080:CDS |
| TATTAGCCATATTTGAAGTG+TGG | 0.573232 | 1_1:+46210655 | Msa0024080:three_prime_UTR |
| GACCCTGAACTTGAAGCAAG+AGG | 0.573741 | 1_1:-46209663 | None:intergenic |
| GCATTTGAGATAGGTGTTGG+AGG | 0.574157 | 1_1:-46206748 | None:intergenic |
| TAGTAGACATACTAAGCTTG+TGG | 0.576638 | 1_1:+46210517 | Msa0024080:three_prime_UTR |
| GTTACCGGACATTACGGTTA+CGG | 0.578279 | 1_1:-46205306 | None:intergenic |
| TCATTACATTAGTGTATCCA+GGG | 0.578943 | 1_1:-46206645 | None:intergenic |
| ACAGCTAATGTTGATTGGAG+TGG | 0.580563 | 1_1:+46210192 | Msa0024080:intron |
| AACGCCAGATGACGCTTCAA+CGG | 0.580618 | 1_1:-46205383 | None:intergenic |
| AGCATATCTAAGTGGGAACA+AGG | 0.581044 | 1_1:+46210991 | Msa0024080:three_prime_UTR |
| GCACTGGATATTGTTAGGAC+AGG | 0.583065 | 1_1:+46210755 | Msa0024080:three_prime_UTR |
| TTTCGAAAGCATCTGAGGAT+GGG | 0.583104 | 1_1:+46210947 | Msa0024080:three_prime_UTR |
| AAGTTAGCATAACAGATATG+TGG | 0.583522 | 1_1:+46210055 | Msa0024080:CDS |
| AAAGAACTCACCTGGAAGCA+AGG | 0.584852 | 1_1:-46209073 | None:intergenic |
| ATATTTGAAGTGTGGCATAG+TGG | 0.584932 | 1_1:+46210663 | Msa0024080:three_prime_UTR |
| ATATCACCATCCACATTACC+AGG | 0.586810 | 1_1:-46207448 | None:intergenic |
| GATTTCAAGCATATCTAAGT+GGG | 0.590275 | 1_1:+46210984 | Msa0024080:three_prime_UTR |
| GCCAGATGACGCTTCAACGG+CGG | 0.590423 | 1_1:-46205380 | None:intergenic |
| TGATTTCAAGCATATCTAAG+TGG | 0.590546 | 1_1:+46210983 | Msa0024080:three_prime_UTR |
| ATACTTACATCAGCATCTGA+AGG | 0.592246 | 1_1:-46209825 | None:intergenic |
| TACTATAGGTGCAAAAGAGG+AGG | 0.592536 | 1_1:+46207215 | Msa0024080:intron |
| AAAGTATGATACTCATCAGT+CGG | 0.596002 | 1_1:-46205431 | None:intergenic |
| AACGCTGGACCTTCCGACCG+TGG | 0.596010 | 1_1:+46205326 | Msa0024080:CDS |
| TTGTTTCGGATAGATGTGGA+GGG | 0.596906 | 1_1:-46205135 | None:intergenic |
| AACGGCTTCATTGACATGAT+CGG | 0.597493 | 1_1:-46205480 | None:intergenic |
| CAGCTACCAGCAGGAGTGAG+CGG | 0.598273 | 1_1:-46206889 | None:intergenic |
| CTCAGGATCAGGAACTTCCA+AGG | 0.601233 | 1_1:-46209253 | None:intergenic |
| TCTACGCCTGGTAATGTGGA+TGG | 0.603037 | 1_1:+46207442 | Msa0024080:CDS |
| CTTGGAAGTTCCTGATCCTG+AGG | 0.604439 | 1_1:+46209254 | Msa0024080:CDS |
| AAACGGAAATGGAAAATGAT+CGG | 0.604850 | 1_1:-46205267 | None:intergenic |
| AGCTCCGCATGGAACCACCT+TGG | 0.605657 | 1_1:+46209236 | Msa0024080:CDS |
| TCCACCGTAACCGTAATGTC+CGG | 0.609815 | 1_1:+46205302 | Msa0024080:exon |
| AATGGAATGAATGAAAGTGA+AGG | 0.612614 | 1_1:+46206598 | Msa0024080:CDS |
| GATAGTTTCGAAAGCATCTG+AGG | 0.614109 | 1_1:+46210942 | Msa0024080:three_prime_UTR |
| CTGACTTTGAAATGCTCTCG+AGG | 0.615106 | 1_1:+46210232 | Msa0024080:CDS |
| AACTCACCTGGAAGCAAGGT+AGG | 0.616174 | 1_1:-46209069 | None:intergenic |
| TACTTACATCAGCATCTGAA+GGG | 0.619198 | 1_1:-46209824 | None:intergenic |
| AGCTAGCCTTGTGAATGTTG+AGG | 0.621713 | 1_1:+46210407 | Msa0024080:three_prime_UTR |
| CTGACCCCAAACAACTTCAA+GGG | 0.624056 | 1_1:+46210731 | Msa0024080:three_prime_UTR |
| TCTCCGCTGTAGTTCGTCAA+CGG | 0.627564 | 1_1:-46209376 | None:intergenic |
| CCATTTGCTCAAGCGTGCTG+AGG | 0.631281 | 1_1:+46207069 | Msa0024080:CDS |
| ATAGCAATCAAAGCTCCGCA+TGG | 0.631816 | 1_1:+46209225 | Msa0024080:CDS |
| CAGCATCCTCAACATTCACA+AGG | 0.636720 | 1_1:-46210413 | None:intergenic |
| AATCATTCTAAGGAGCACAA+TGG | 0.638536 | 1_1:+46209404 | Msa0024080:CDS |
| AGCAAGAGGTAAGCTTGCGG+GGG | 0.640114 | 1_1:-46209649 | None:intergenic |
| GTTTCACAAGAGTTTGCTGG+GGG | 0.641606 | 1_1:+46209786 | Msa0024080:CDS |
| TCGTTTATGCCTAAGAGAGT+CGG | 0.643067 | 1_1:-46210490 | None:intergenic |
| ACTCCTTTGTCTGCAAAAGG+GGG | 0.643497 | 1_1:+46206682 | Msa0024080:CDS |
| TACTGCATGAAATGCAAGGT+AGG | 0.651467 | 1_1:+46210597 | Msa0024080:three_prime_UTR |
| TTGGGATGCCTATTGCACGA+AGG | 0.652524 | 1_1:+46210898 | Msa0024080:three_prime_UTR |
| ACCTGCTGAATGCAGTGGAA+AGG | 0.654494 | 1_1:+46209713 | Msa0024080:CDS |
| GCAAGAGGTAAGCTTGCGGG+GGG | 0.656380 | 1_1:-46209648 | None:intergenic |
| GGGAAGGGCAAACAAGTCAA+GGG | 0.657296 | 1_1:+46206702 | Msa0024080:CDS |
| TGAAGCAAGAGGTAAGCTTG+CGG | 0.662777 | 1_1:-46209652 | None:intergenic |
| ACTGCTGTGTTGCGTAGTCA+GGG | 0.668372 | 1_1:+46211032 | Msa0024080:three_prime_UTR |
| ATGGTACCTGCTGAATGCAG+TGG | 0.669987 | 1_1:+46209708 | Msa0024080:CDS |
| TCATCAGTCGGTGCAAACGG+TGG | 0.672671 | 1_1:-46205419 | None:intergenic |
| TTAGGGTTAGCTACAGTCGA+TGG | 0.674010 | 1_1:-46210288 | None:intergenic |
| AGGCCGTTGACGAACTACAG+CGG | 0.677542 | 1_1:+46209373 | Msa0024080:intron |
| TTATCATCCTCTGTATTGAG+GGG | 0.677777 | 1_1:+46210359 | Msa0024080:three_prime_UTR |
| GTAGCTTCCCCTCAATACAG+AGG | 0.684688 | 1_1:-46210366 | None:intergenic |
| TGTTTCACAAGAGTTTGCTG+GGG | 0.692916 | 1_1:+46209785 | Msa0024080:CDS |
| TAATGTTGATTGGAGTGGAG+TGG | 0.694763 | 1_1:+46210197 | Msa0024080:CDS |
| TTGCTACTGCATGAAATGCA+AGG | 0.701504 | 1_1:+46210593 | Msa0024080:three_prime_UTR |
| GTTACGGTGGAGAATCGGAG+TGG | 0.705240 | 1_1:-46205290 | None:intergenic |
| AATGATCGGAGAGAAATTGG+GGG | 0.706493 | 1_1:-46205253 | None:intergenic |
| ACCGGACATTACGGTTACGG+TGG | 0.713898 | 1_1:-46205303 | None:intergenic |
| ACTTCCAAGGTGGTTCCATG+CGG | 0.714996 | 1_1:-46209240 | None:intergenic |
| GGTGGTGTAAGGTCATAAAG+CGG | 0.723032 | 1_1:+46206572 | Msa0024080:intron |
| AGGATCAGGAACTTCCAAGG+TGG | 0.735853 | 1_1:-46209250 | None:intergenic |
| TGAATGTTGAGGATGCTGTG+AGG | 0.792058 | 1_1:+46210418 | Msa0024080:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTAAATTATTAC+CGG | + | chr1_1:46206137-46206156 | Msa0024080:intron | 10.0% |
| !!! | TAGAAAAAATGTATATATTT+TGG | - | chr1_1:46207341-46207360 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | chr1_1:46209956-46209975 | Msa0024080:intron | 10.0% |
| !!! | AAAATCTTTTGTATAGAATA+CGG | - | chr1_1:46207138-46207157 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCCTTTTTGAAA+AGG | + | chr1_1:46210689-46210708 | Msa0024080:three_prime_UTR | 15.0% |
| !! | TGAATGATAATTGAATAATA+AGG | - | chr1_1:46210785-46210804 | None:intergenic | 15.0% |
| !!! | TTTTGTTAATTTTGCATCTT+CGG | + | chr1_1:46205570-46205589 | Msa0024080:intron | 20.0% |
| !!! | TTTATTTTTGTGGAAATAGT+TGG | + | chr1_1:46205651-46205670 | Msa0024080:intron | 20.0% |
| !!! | GTTTTATATGCTTTTGATTT+TGG | + | chr1_1:46205680-46205699 | Msa0024080:intron | 20.0% |
| !! | TTAAAATTATTTCCTAACAC+TGG | + | chr1_1:46205785-46205804 | Msa0024080:intron | 20.0% |
| !! | CAACTTGGTTTAATTAAAAT+TGG | + | chr1_1:46205817-46205836 | Msa0024080:intron | 20.0% |
| !! | TTGGTTTAATTAAAATTGGA+GGG | + | chr1_1:46205821-46205840 | Msa0024080:intron | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | chr1_1:46206789-46206808 | None:intergenic | 20.0% |
| !! | AGAAAAAGTAACAGATATAT+TGG | - | chr1_1:46207163-46207182 | None:intergenic | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | chr1_1:46207201-46207220 | Msa0024080:intron | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | chr1_1:46207240-46207259 | Msa0024080:CDS | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | chr1_1:46207287-46207306 | Msa0024080:CDS | 20.0% |
| !!! | TTGTTTTCTCATATTGATAA+GGG | + | chr1_1:46207743-46207762 | Msa0024080:intron | 20.0% |
| !! | AAGTCATTCTAATTAATTTC+TGG | - | chr1_1:46208603-46208622 | None:intergenic | 20.0% |
| !! | AATTAATTAGAATGACTTAG+TGG | + | chr1_1:46208605-46208624 | Msa0024080:intron | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | chr1_1:46208936-46208955 | None:intergenic | 20.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | chr1_1:46208937-46208956 | None:intergenic | 20.0% |
| !!! | AATAACAATATTTTTCCTTC+TGG | - | chr1_1:46208976-46208995 | None:intergenic | 20.0% |
| !!! | AACAATGTTGATAATAACAA+TGG | - | chr1_1:46209125-46209144 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | chr1_1:46209577-46209596 | None:intergenic | 20.0% |
| !!! | TTTGTATTGATTAAACACTT+CGG | + | chr1_1:46209916-46209935 | Msa0024080:intron | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | chr1_1:46210095-46210114 | None:intergenic | 20.0% |
| ! | CTTGGTTTAATTAAAATTGG+AGG | + | chr1_1:46205820-46205839 | Msa0024080:intron | 25.0% |
| !! | TTTTTAAATTATTACCGGTG+TGG | + | chr1_1:46206142-46206161 | Msa0024080:intron | 25.0% |
| !! | TTATGAACTCTTTTCATTTG+TGG | + | chr1_1:46206346-46206365 | Msa0024080:intron | 25.0% |
| !! | TGTATGATTAATTGCTACTT+TGG | + | chr1_1:46206442-46206461 | Msa0024080:intron | 25.0% |
| ! | CTTATTGTTTATGAACATGT+TGG | + | chr1_1:46206551-46206570 | Msa0024080:intron | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | chr1_1:46206788-46206807 | None:intergenic | 25.0% |
| ! | TTGAACATAACGTAGATAAA+TGG | - | chr1_1:46206801-46206820 | None:intergenic | 25.0% |
| ! | TATAGTTTCTTATGACATGT+AGG | + | chr1_1:46206856-46206875 | Msa0024080:intron | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | chr1_1:46206978-46206997 | None:intergenic | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | chr1_1:46207194-46207213 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | chr1_1:46207527-46207546 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | chr1_1:46207650-46207669 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | chr1_1:46207659-46207678 | Msa0024080:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | chr1_1:46207674-46207693 | Msa0024080:intron | 25.0% |
| !!! | GTTGTTTTCTCATATTGATA+AGG | + | chr1_1:46207742-46207761 | Msa0024080:intron | 25.0% |
| ! | TTACAATATTCAACTAGTTG+TGG | - | chr1_1:46208271-46208290 | None:intergenic | 25.0% |
| ! | TGAATATTGTAACTCAAACT+AGG | + | chr1_1:46208279-46208298 | Msa0024080:intron | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | chr1_1:46208410-46208429 | Msa0024080:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | chr1_1:46208450-46208469 | Msa0024080:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | chr1_1:46208451-46208470 | Msa0024080:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | chr1_1:46208474-46208493 | Msa0024080:intron | 25.0% |
| !! | TATGTATATCAAGTTGTTAG+AGG | + | chr1_1:46208526-46208545 | Msa0024080:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | chr1_1:46208854-46208873 | Msa0024080:intron | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | chr1_1:46209014-46209033 | Msa0024080:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | chr1_1:46209018-46209037 | None:intergenic | 25.0% |
| !!! | GTTGATAATAACAATGGAAA+AGG | - | chr1_1:46209119-46209138 | None:intergenic | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | chr1_1:46209618-46209637 | Msa0024080:CDS | 25.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | chr1_1:46209949-46209968 | None:intergenic | 25.0% |
| ! | ATCAAAATCATCTCTGATTA+GGG | - | chr1_1:46210308-46210327 | None:intergenic | 25.0% |
| ! | AATCAAAATCATCTCTGATT+AGG | - | chr1_1:46210309-46210328 | None:intergenic | 25.0% |
| ! | TATCACTAAGTTAGAAAGTA+TGG | + | chr1_1:46210336-46210355 | Msa0024080:three_prime_UTR | 25.0% |
| !! | AATTTTGTTTCGGATAGATG+TGG | - | chr1_1:46205142-46205161 | None:intergenic | 30.0% |
| AAAATGATCGGAGAGAAATT+GGG | - | chr1_1:46205258-46205277 | None:intergenic | 30.0% | |
| AAACGGAAATGGAAAATGAT+CGG | - | chr1_1:46205270-46205289 | None:intergenic | 30.0% | |
| AAAGTATGATACTCATCAGT+CGG | - | chr1_1:46205434-46205453 | None:intergenic | 30.0% | |
| !! | GCTTTGAAATTTCACTTGTA+TGG | + | chr1_1:46205854-46205873 | Msa0024080:intron | 30.0% |
| ! | AACTGTGTCGAAAACATTTT+CGG | + | chr1_1:46205890-46205909 | Msa0024080:intron | 30.0% |
| ATATGCTTATTCTTGTTAGC+TGG | + | chr1_1:46205965-46205984 | Msa0024080:intron | 30.0% | |
| AGTTCATTAAGTCTAATGCT+TGG | + | chr1_1:46206020-46206039 | Msa0024080:intron | 30.0% | |
| TGATTATGTGCAAAAATGTG+TGG | + | chr1_1:46206198-46206217 | Msa0024080:intron | 30.0% | |
| ! | TGCAAAAATGTGTGGATTTT+CGG | + | chr1_1:46206206-46206225 | Msa0024080:intron | 30.0% |
| ACATCAATATATCGGTGAAA+TGG | - | chr1_1:46206493-46206512 | None:intergenic | 30.0% | |
| ACACACACACATCAATATAT+CGG | - | chr1_1:46206501-46206520 | None:intergenic | 30.0% | |
| ATTGTTTATGAACATGTTGG+TGG | + | chr1_1:46206554-46206573 | Msa0024080:intron | 30.0% | |
| AATGGAATGAATGAAAGTGA+AGG | + | chr1_1:46206598-46206617 | Msa0024080:CDS | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | chr1_1:46206648-46206667 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | chr1_1:46206649-46206668 | None:intergenic | 30.0% | |
| TCATAAGAAACTATAAGCTG+GGG | - | chr1_1:46206851-46206870 | None:intergenic | 30.0% | |
| GTCATAAGAAACTATAAGCT+GGG | - | chr1_1:46206852-46206871 | None:intergenic | 30.0% | |
| TGTCATAAGAAACTATAAGC+TGG | - | chr1_1:46206853-46206872 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | chr1_1:46206929-46206948 | None:intergenic | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | chr1_1:46206970-46206989 | None:intergenic | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | chr1_1:46206971-46206990 | None:intergenic | 30.0% | |
| AACTTATACAAGAACTTCAC+AGG | + | chr1_1:46207025-46207044 | Msa0024080:intron | 30.0% | |
| !! | GACATAACTAATGTTTTGGA+AGG | + | chr1_1:46207244-46207263 | Msa0024080:CDS | 30.0% |
| AATTCTTACATCAAACCTTG+TGG | + | chr1_1:46207399-46207418 | Msa0024080:intron | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | chr1_1:46207587-46207606 | None:intergenic | 30.0% | |
| AAAGGATAGTATCAATCTCT+TGG | + | chr1_1:46207692-46207711 | Msa0024080:intron | 30.0% | |
| AAGGATAGTATCAATCTCTT+GGG | + | chr1_1:46207693-46207712 | Msa0024080:intron | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | chr1_1:46208025-46208044 | None:intergenic | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | chr1_1:46208248-46208267 | None:intergenic | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | chr1_1:46208778-46208797 | Msa0024080:intron | 30.0% | |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | chr1_1:46208799-46208818 | Msa0024080:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | chr1_1:46208853-46208872 | Msa0024080:intron | 30.0% |
| TTGCATTTCCCTGTTAATAA+TGG | - | chr1_1:46208865-46208884 | None:intergenic | 30.0% | |
| ! | ACAATATTTTTCCTTCTGGA+AGG | - | chr1_1:46208972-46208991 | None:intergenic | 30.0% |
| AATCTCAATAACAGCATGAA+AGG | - | chr1_1:46209155-46209174 | None:intergenic | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | chr1_1:46209353-46209372 | Msa0024080:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | chr1_1:46209394-46209413 | Msa0024080:CDS | 30.0% | |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | chr1_1:46209477-46209496 | None:intergenic | 30.0% |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | chr1_1:46209565-46209584 | Msa0024080:intron | 30.0% |
| CTCTTCAAATTGACTGAAAA+CGG | - | chr1_1:46209601-46209620 | None:intergenic | 30.0% | |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | chr1_1:46210016-46210035 | Msa0024080:intron | 30.0% |
| AAGTTAGCATAACAGATATG+TGG | + | chr1_1:46210055-46210074 | Msa0024080:CDS | 30.0% | |
| ! | TATTAGCCATATTTGAAGTG+TGG | + | chr1_1:46210655-46210674 | Msa0024080:three_prime_UTR | 30.0% |
| AGCAAAATGACAGAAAAAAC+GGG | - | chr1_1:46210872-46210891 | None:intergenic | 30.0% | |
| GAGCAAAATGACAGAAAAAA+CGG | - | chr1_1:46210873-46210892 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTGCTCTATCTTT+GGG | + | chr1_1:46210880-46210899 | Msa0024080:three_prime_UTR | 30.0% |
| GCTTGAAATCATATAGCAAA+TGG | - | chr1_1:46210974-46210993 | None:intergenic | 30.0% | |
| TGATTTCAAGCATATCTAAG+TGG | + | chr1_1:46210983-46211002 | Msa0024080:three_prime_UTR | 30.0% | |
| GATTTCAAGCATATCTAAGT+GGG | + | chr1_1:46210984-46211003 | Msa0024080:three_prime_UTR | 30.0% | |
| AGAGAGAAGAAAATGAGGAA+GGG | - | chr1_1:46205181-46205200 | None:intergenic | 35.0% | |
| AAGAGAGAAGAAAATGAGGA+AGG | - | chr1_1:46205182-46205201 | None:intergenic | 35.0% | |
| AGAGAAGAGAGAAGAAAATG+AGG | - | chr1_1:46205186-46205205 | None:intergenic | 35.0% | |
| AAATGATCGGAGAGAAATTG+GGG | - | chr1_1:46205257-46205276 | None:intergenic | 35.0% | |
| GAAAATGATCGGAGAGAAAT+TGG | - | chr1_1:46205259-46205278 | None:intergenic | 35.0% | |
| TTGAATTCAGATCCAGTGTT+AGG | - | chr1_1:46205800-46205819 | None:intergenic | 35.0% | |
| ! | AAAATTGGAGGGATTTTCTG+AGG | + | chr1_1:46205832-46205851 | Msa0024080:intron | 35.0% |
| CGGATACTATTGTTGTACAT+TGG | + | chr1_1:46205913-46205932 | Msa0024080:intron | 35.0% | |
| ATTAAGTCTAATGCTTGGCT+CGG | + | chr1_1:46206025-46206044 | Msa0024080:intron | 35.0% | |
| ! | AAAAATGTGTGGATTTTCGG+CGG | + | chr1_1:46206209-46206228 | Msa0024080:intron | 35.0% |
| CGGATAAGATTACTGTACAT+TGG | + | chr1_1:46206229-46206248 | Msa0024080:intron | 35.0% | |
| TTCATAAACTTTGAGTGCCT+TGG | + | chr1_1:46206313-46206332 | Msa0024080:intron | 35.0% | |
| TTCATAAGTGAGCATTACCA+AGG | - | chr1_1:46206333-46206352 | None:intergenic | 35.0% | |
| TTGATGTGTGTGTGTATCTT+TGG | + | chr1_1:46206506-46206525 | Msa0024080:intron | 35.0% | |
| AAAACTCCTTTGTCTGCAAA+AGG | + | chr1_1:46206679-46206698 | Msa0024080:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | chr1_1:46206680-46206699 | Msa0024080:CDS | 35.0% | |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | chr1_1:46206919-46206938 | Msa0024080:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | chr1_1:46207214-46207233 | None:intergenic | 35.0% |
| CTATACTATAGGTGCAAAAG+AGG | + | chr1_1:46207212-46207231 | Msa0024080:intron | 35.0% | |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | chr1_1:46207250-46207269 | Msa0024080:CDS | 35.0% |
| TGGTGATATCTCTTTGCTTA+AGG | + | chr1_1:46207462-46207481 | Msa0024080:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | chr1_1:46207517-46207536 | None:intergenic | 35.0% | |
| TGGAAATGAATATACACGAG+CGG | - | chr1_1:46207567-46207586 | None:intergenic | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | chr1_1:46207601-46207620 | Msa0024080:intron | 35.0% | |
| AGTATCAATCTCTTGGGATA+AGG | + | chr1_1:46207699-46207718 | Msa0024080:intron | 35.0% | |
| GTATCAATCTCTTGGGATAA+GGG | + | chr1_1:46207700-46207719 | Msa0024080:intron | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | chr1_1:46208026-46208045 | None:intergenic | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | chr1_1:46208103-46208122 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | chr1_1:46208108-46208127 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | chr1_1:46208249-46208268 | None:intergenic | 35.0% | |
| AGCGTCAATATGTTGTGATA+AGG | + | chr1_1:46208404-46208423 | Msa0024080:intron | 35.0% | |
| CCAATTAACAACATGTTGCA+AGG | - | chr1_1:46208691-46208710 | None:intergenic | 35.0% | |
| CCTTGCAACATGTTGTTAAT+TGG | + | chr1_1:46208688-46208707 | Msa0024080:intron | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | chr1_1:46208770-46208789 | Msa0024080:CDS | 35.0% | |
| ACTAAATGGGAGATTACTTC+TGG | - | chr1_1:46208923-46208942 | None:intergenic | 35.0% | |
| !! | ATATTTTTCCTTCTGGAAGG+AGG | - | chr1_1:46208969-46208988 | None:intergenic | 35.0% |
| GTCACAAAAAGGAACCTAAA+AGG | - | chr1_1:46209031-46209050 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | chr1_1:46209268-46209287 | Msa0024080:intron | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | chr1_1:46209285-46209304 | Msa0024080:intron | 35.0% | |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | chr1_1:46209326-46209345 | Msa0024080:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | chr1_1:46209404-46209423 | Msa0024080:CDS | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | chr1_1:46209405-46209424 | Msa0024080:CDS | 35.0% |
| CTGATAAGGTAGACATCAAT+TGG | - | chr1_1:46209432-46209451 | None:intergenic | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | chr1_1:46209430-46209449 | Msa0024080:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | chr1_1:46209446-46209465 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | chr1_1:46209783-46209802 | Msa0024080:CDS | 35.0% | |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | chr1_1:46209784-46209803 | Msa0024080:CDS | 35.0% |
| TACTTACATCAGCATCTGAA+GGG | - | chr1_1:46209827-46209846 | None:intergenic | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | chr1_1:46209828-46209847 | None:intergenic | 35.0% | |
| TTGATTAAACACTTCGGATG+TGG | + | chr1_1:46209922-46209941 | Msa0024080:intron | 35.0% | |
| ATCAACATTAGCTGTTATGC+TGG | - | chr1_1:46210187-46210206 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | chr1_1:46210187-46210206 | Msa0024080:intron | 35.0% | |
| GTTATCATCCTCTGTATTGA+GGG | + | chr1_1:46210358-46210377 | Msa0024080:three_prime_UTR | 35.0% | |
| TTATCATCCTCTGTATTGAG+GGG | + | chr1_1:46210359-46210378 | Msa0024080:three_prime_UTR | 35.0% | |
| TAGTAGACATACTAAGCTTG+TGG | + | chr1_1:46210517-46210536 | Msa0024080:three_prime_UTR | 35.0% | |
| ACTATGCCACACTTCAAATA+TGG | - | chr1_1:46210664-46210683 | None:intergenic | 35.0% | |
| ! | ATATTTGAAGTGTGGCATAG+TGG | + | chr1_1:46210663-46210682 | Msa0024080:three_prime_UTR | 35.0% |
| ! | TATTTGAAGTGTGGCATAGT+GGG | + | chr1_1:46210664-46210683 | Msa0024080:three_prime_UTR | 35.0% |
| AGAAAAAACGGGAGTAGTTT+GGG | - | chr1_1:46210861-46210880 | None:intergenic | 35.0% | |
| !!! | CTGTCATTTTGCTCTATCTT+TGG | + | chr1_1:46210879-46210898 | Msa0024080:three_prime_UTR | 35.0% |
| TTGTTTCGGATAGATGTGGA+GGG | - | chr1_1:46205138-46205157 | None:intergenic | 40.0% | |
| TTTGTTTCGGATAGATGTGG+AGG | - | chr1_1:46205139-46205158 | None:intergenic | 40.0% | |
| !! | GAAGGGAGGGAATTTTGTTT+CGG | - | chr1_1:46205152-46205171 | None:intergenic | 40.0% |
| AGAAGAAAATGAGGAAGGGA+GGG | - | chr1_1:46205177-46205196 | None:intergenic | 40.0% | |
| !!! | GGTTTTAGAGAGAGAAAGTG+GGG | - | chr1_1:46205225-46205244 | None:intergenic | 40.0% |
| !!! | GGGTTTTAGAGAGAGAAAGT+GGG | - | chr1_1:46205226-46205245 | None:intergenic | 40.0% |
| !!! | AGGGTTTTAGAGAGAGAAAG+TGG | - | chr1_1:46205227-46205246 | None:intergenic | 40.0% |
| AATGATCGGAGAGAAATTGG+GGG | - | chr1_1:46205256-46205275 | None:intergenic | 40.0% | |
| AACGGCTTCATTGACATGAT+CGG | - | chr1_1:46205483-46205502 | None:intergenic | 40.0% | |
| AGCCGTTATTGTTAGATCTC+CGG | + | chr1_1:46205496-46205515 | Msa0024080:CDS | 40.0% | |
| CACCGGAGATCTAACAATAA+CGG | - | chr1_1:46205501-46205520 | None:intergenic | 40.0% | |
| GACTAAAACGAAGAACACAC+CGG | - | chr1_1:46205518-46205537 | None:intergenic | 40.0% | |
| CACTGGATCTGAATTCAACT+TGG | + | chr1_1:46205802-46205821 | Msa0024080:intron | 40.0% | |
| ! | TGTGTCGAAAACATTTTCGG+CGG | + | chr1_1:46205893-46205912 | Msa0024080:intron | 40.0% |
| CGAGTGTGTGTTTGTTTGAT+AGG | + | chr1_1:46205994-46206013 | Msa0024080:intron | 40.0% | |
| !!! | AGCACTGACACTTTTACCAA+AGG | + | chr1_1:46206049-46206068 | Msa0024080:intron | 40.0% |
| !! | GTATCTATGAAGCACTGACA+CGG | - | chr1_1:46206174-46206193 | None:intergenic | 40.0% |
| GTCAGTGCTTCATAGATACT+TGG | + | chr1_1:46206175-46206194 | Msa0024080:intron | 40.0% | |
| !! | ATGAACATGTTGGTGGTGTA+AGG | + | chr1_1:46206561-46206580 | Msa0024080:intron | 40.0% |
| AAGGTCATAAAGCGGAAGAA+TGG | + | chr1_1:46206580-46206599 | Msa0024080:intron | 40.0% | |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | chr1_1:46206675-46206694 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | chr1_1:46206676-46206695 | None:intergenic | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | chr1_1:46206677-46206696 | None:intergenic | 40.0% |
| AACTCCTTTGTCTGCAAAAG+GGG | + | chr1_1:46206681-46206700 | Msa0024080:CDS | 40.0% | |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | chr1_1:46206731-46206750 | None:intergenic | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | chr1_1:46206760-46206779 | None:intergenic | 40.0% |
| TGTCGTTATGACAGTTCCTT+AGG | + | chr1_1:46206910-46206929 | Msa0024080:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | chr1_1:46207111-46207130 | Msa0024080:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | chr1_1:46207215-46207234 | Msa0024080:intron | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | chr1_1:46207451-46207470 | None:intergenic | 40.0% | |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | chr1_1:46207783-46207802 | Msa0024080:intron | 40.0% |
| CTCAAACTTTCTCTCTCCTA+TGG | - | chr1_1:46207802-46207821 | None:intergenic | 40.0% | |
| TGAGCTAGTGATGGTTATTC+AGG | - | chr1_1:46207859-46207878 | None:intergenic | 40.0% | |
| ! | TCAAGGCTTTTCTGTCTCAA+TGG | + | chr1_1:46207886-46207905 | Msa0024080:intron | 40.0% |
| ! | CAAGGCTTTTCTGTCTCAAT+GGG | + | chr1_1:46207887-46207906 | Msa0024080:intron | 40.0% |
| ! | AAGGCTTTTCTGTCTCAATG+GGG | + | chr1_1:46207888-46207907 | Msa0024080:intron | 40.0% |
| TACATTACCTCCTCAAGCTT+AGG | + | chr1_1:46207978-46207997 | Msa0024080:intron | 40.0% | |
| ACATTACCTCCTCAAGCTTA+GGG | + | chr1_1:46207979-46207998 | Msa0024080:intron | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | chr1_1:46208045-46208064 | Msa0024080:intron | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | chr1_1:46208097-46208116 | None:intergenic | 40.0% | |
| AGCAGAAACCCATATGTTAG+AGG | + | chr1_1:46208237-46208256 | Msa0024080:intron | 40.0% | |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | chr1_1:46208335-46208354 | None:intergenic | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | chr1_1:46208332-46208351 | Msa0024080:intron | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | chr1_1:46208542-46208561 | Msa0024080:intron | 40.0% |
| GAATTATGTTGTCAGCCTTG+TGG | + | chr1_1:46208649-46208668 | Msa0024080:intron | 40.0% | |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | chr1_1:46208667-46208686 | None:intergenic | 40.0% |
| ACATGTTGTTAATTGGCTGC+TGG | + | chr1_1:46208695-46208714 | Msa0024080:intron | 40.0% | |
| TATCTTCCTCGGTCACAAAA+AGG | - | chr1_1:46209042-46209061 | None:intergenic | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | chr1_1:46209045-46209064 | Msa0024080:CDS | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | chr1_1:46209046-46209065 | Msa0024080:CDS | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | chr1_1:46209053-46209072 | None:intergenic | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | chr1_1:46209084-46209103 | None:intergenic | 40.0% | |
| AAACTTACTTCCTCAGGATC+AGG | - | chr1_1:46209267-46209286 | None:intergenic | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | chr1_1:46209267-46209286 | Msa0024080:intron | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | chr1_1:46209273-46209292 | None:intergenic | 40.0% | |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | chr1_1:46209660-46209679 | Msa0024080:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | chr1_1:46209661-46209680 | Msa0024080:CDS | 40.0% |
| TGAGCAACAAGTGACAGAAA+TGG | + | chr1_1:46209689-46209708 | Msa0024080:CDS | 40.0% | |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | chr1_1:46209785-46209804 | Msa0024080:CDS | 40.0% |
| ! | AAGTATATCACAGCCTTGTG+AGG | + | chr1_1:46209842-46209861 | Msa0024080:intron | 40.0% |
| ! | AGTATATCACAGCCTTGTGA+GGG | + | chr1_1:46209843-46209862 | Msa0024080:intron | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | chr1_1:46209875-46209894 | Msa0024080:intron | 40.0% |
| TAGCTGTTATGCTGGAGTTA+AGG | - | chr1_1:46210179-46210198 | None:intergenic | 40.0% | |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | chr1_1:46210192-46210211 | Msa0024080:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | chr1_1:46210197-46210216 | Msa0024080:CDS | 40.0% |
| GGTTATCATCCTCTGTATTG+AGG | + | chr1_1:46210357-46210376 | Msa0024080:three_prime_UTR | 40.0% | |
| !! | AGTAAATCACCGACTCTCTT+AGG | + | chr1_1:46210481-46210500 | Msa0024080:three_prime_UTR | 40.0% |
| TCGTTTATGCCTAAGAGAGT+CGG | - | chr1_1:46210493-46210512 | None:intergenic | 40.0% | |
| TTGCTACTGCATGAAATGCA+AGG | + | chr1_1:46210593-46210612 | Msa0024080:three_prime_UTR | 40.0% | |
| TACTGCATGAAATGCAAGGT+AGG | + | chr1_1:46210597-46210616 | Msa0024080:three_prime_UTR | 40.0% | |
| CGACGATCAGTATTTGTATC+TGG | + | chr1_1:46210626-46210645 | Msa0024080:three_prime_UTR | 40.0% | |
| ! | GCAGCTTCTCCTTTTCAAAA+AGG | - | chr1_1:46210701-46210720 | None:intergenic | 40.0% |
| CAGAAAAAACGGGAGTAGTT+TGG | - | chr1_1:46210862-46210881 | None:intergenic | 40.0% | |
| !! | GATAGTTTCGAAAGCATCTG+AGG | + | chr1_1:46210942-46210961 | Msa0024080:three_prime_UTR | 40.0% |
| !! | TTTCGAAAGCATCTGAGGAT+GGG | + | chr1_1:46210947-46210966 | Msa0024080:three_prime_UTR | 40.0% |
| AGCATATCTAAGTGGGAACA+AGG | + | chr1_1:46210991-46211010 | Msa0024080:three_prime_UTR | 40.0% | |
| GAGAAGAAAATGAGGAAGGG+AGG | - | chr1_1:46205178-46205197 | None:intergenic | 45.0% | |
| GAGAAATTGGGGGAGAAGTA+GGG | - | chr1_1:46205246-46205265 | None:intergenic | 45.0% | |
| AGAGAAATTGGGGGAGAAGT+AGG | - | chr1_1:46205247-46205266 | None:intergenic | 45.0% | |
| AATCGGAGTGGAAACGGAAA+TGG | - | chr1_1:46205281-46205300 | None:intergenic | 45.0% | |
| TTACGGTTACGGTGGAGAAT+CGG | - | chr1_1:46205298-46205317 | None:intergenic | 45.0% | |
| GTTACCGGACATTACGGTTA+CGG | - | chr1_1:46205309-46205328 | None:intergenic | 45.0% | |
| TACTCATCAGTCGGTGCAAA+CGG | - | chr1_1:46205425-46205444 | None:intergenic | 45.0% | |
| !! | CTTTCGCTGCTGTTGATTCT+AGG | + | chr1_1:46205450-46205469 | Msa0024080:CDS | 45.0% |
| !! | ACTTTTACCAAAGGCGTGTC+TGG | + | chr1_1:46206058-46206077 | Msa0024080:intron | 45.0% |
| GGTGGTGTAAGGTCATAAAG+CGG | + | chr1_1:46206572-46206591 | Msa0024080:intron | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | chr1_1:46206628-46206647 | Msa0024080:CDS | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | chr1_1:46206682-46206701 | Msa0024080:CDS | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | chr1_1:46206687-46206706 | Msa0024080:CDS | 45.0% | |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | chr1_1:46206715-46206734 | Msa0024080:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | chr1_1:46206751-46206770 | None:intergenic | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | chr1_1:46206754-46206773 | None:intergenic | 45.0% |
| CCAACACCTATCTCAAATGC+TGG | + | chr1_1:46206751-46206770 | Msa0024080:CDS | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | chr1_1:46206841-46206860 | None:intergenic | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | chr1_1:46207430-46207449 | Msa0024080:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | chr1_1:46207438-46207457 | Msa0024080:CDS | 45.0% |
| TCTTGAGACCTATTGACACC+TGG | + | chr1_1:46207506-46207525 | Msa0024080:intron | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | chr1_1:46207606-46207625 | Msa0024080:intron | 45.0% | |
| TAACCATCACTAGCTCACTG+AGG | + | chr1_1:46207862-46207881 | Msa0024080:intron | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | chr1_1:46208156-46208175 | Msa0024080:intron | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | chr1_1:46208183-46208202 | None:intergenic | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | chr1_1:46208193-46208212 | Msa0024080:intron | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | chr1_1:46208194-46208213 | Msa0024080:intron | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | chr1_1:46208315-46208334 | Msa0024080:intron | 45.0% | |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | chr1_1:46208322-46208341 | None:intergenic | 45.0% |
| GCATGGGGATTATGTGAGAT+GGG | - | chr1_1:46208358-46208377 | None:intergenic | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | chr1_1:46208359-46208378 | None:intergenic | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | chr1_1:46208374-46208393 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | chr1_1:46208382-46208401 | None:intergenic | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | chr1_1:46208379-46208398 | Msa0024080:intron | 45.0% | |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | chr1_1:46208720-46208739 | Msa0024080:intron | 45.0% |
| GGAAGTTGACAACCTTTCTC+TGG | + | chr1_1:46208741-46208760 | Msa0024080:CDS | 45.0% | |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | chr1_1:46209033-46209052 | Msa0024080:intron | 45.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | chr1_1:46209076-46209095 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | chr1_1:46209225-46209244 | Msa0024080:CDS | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | chr1_1:46209655-46209674 | None:intergenic | 45.0% | |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | chr1_1:46209786-46209805 | Msa0024080:CDS | 45.0% |
| AATCCCCAGTATGAAGTGGA+GGG | - | chr1_1:46209873-46209892 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | chr1_1:46209874-46209893 | None:intergenic | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | chr1_1:46209877-46209896 | None:intergenic | 45.0% | |
| ! | CCACTTCATACTGGGGATTT+TGG | + | chr1_1:46209874-46209893 | Msa0024080:intron | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | chr1_1:46210234-46210253 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | chr1_1:46210232-46210251 | Msa0024080:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | chr1_1:46210291-46210310 | None:intergenic | 45.0% |
| !! | AGCTAGCCTTGTGAATGTTG+AGG | + | chr1_1:46210407-46210426 | Msa0024080:three_prime_UTR | 45.0% |
| CAGCATCCTCAACATTCACA+AGG | - | chr1_1:46210416-46210435 | None:intergenic | 45.0% | |
| TGAATGTTGAGGATGCTGTG+AGG | + | chr1_1:46210418-46210437 | Msa0024080:three_prime_UTR | 45.0% | |
| CTGACCCCAAACAACTTCAA+GGG | + | chr1_1:46210731-46210750 | Msa0024080:three_prime_UTR | 45.0% | |
| TGCACCCTTGAAGTTGTTTG+GGG | - | chr1_1:46210738-46210757 | None:intergenic | 45.0% | |
| GTGCACCCTTGAAGTTGTTT+GGG | - | chr1_1:46210739-46210758 | None:intergenic | 45.0% | |
| AGTGCACCCTTGAAGTTGTT+TGG | - | chr1_1:46210740-46210759 | None:intergenic | 45.0% | |
| ! | AAACAACTTCAAGGGTGCAC+TGG | + | chr1_1:46210739-46210758 | Msa0024080:three_prime_UTR | 45.0% |
| AGGGTGCACTGGATATTGTT+AGG | + | chr1_1:46210750-46210769 | Msa0024080:three_prime_UTR | 45.0% | |
| GCACTGGATATTGTTAGGAC+AGG | + | chr1_1:46210755-46210774 | Msa0024080:three_prime_UTR | 45.0% | |
| TGTGTAAGCCTTCGTGCAAT+AGG | - | chr1_1:46210909-46210928 | None:intergenic | 45.0% | |
| !! | GTTTCGAAAGCATCTGAGGA+TGG | + | chr1_1:46210946-46210965 | Msa0024080:three_prime_UTR | 45.0% |
| !!! | ATTTTTTATTTTTATTTTTG+TGG | + | chr1_1:46205641-46205660 | Msa0024080:intron | 5.0% |
| ATGAGGAAGGGAGGGAAGAA+GGG | - | chr1_1:46205169-46205188 | None:intergenic | 50.0% | |
| AATGAGGAAGGGAGGGAAGA+AGG | - | chr1_1:46205170-46205189 | None:intergenic | 50.0% | |
| GTGGAGAATCGGAGTGGAAA+CGG | - | chr1_1:46205287-46205306 | None:intergenic | 50.0% | |
| TCCACCGTAACCGTAATGTC+CGG | + | chr1_1:46205302-46205321 | Msa0024080:exon | 50.0% | |
| TCCAGCGTTACCGGACATTA+CGG | - | chr1_1:46205315-46205334 | None:intergenic | 50.0% | |
| AACGCCAGATGACGCTTCAA+CGG | - | chr1_1:46205386-46205405 | None:intergenic | 50.0% | |
| TCAAACACCAGACACGCCTT+TGG | - | chr1_1:46206068-46206087 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | chr1_1:46206688-46206707 | None:intergenic | 50.0% |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | chr1_1:46206686-46206705 | Msa0024080:CDS | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | chr1_1:46206702-46206721 | Msa0024080:CDS | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | chr1_1:46206901-46206920 | None:intergenic | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | chr1_1:46207409-46207428 | Msa0024080:intron | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | chr1_1:46207417-46207436 | None:intergenic | 50.0% | |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | chr1_1:46207442-46207461 | Msa0024080:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | chr1_1:46207617-46207636 | Msa0024080:intron | 50.0% |
| TTACCTCCTCAAGCTTAGGG+TGG | + | chr1_1:46207982-46208001 | Msa0024080:intron | 50.0% | |
| TCTGCGGCATGCGTTTGTAT+TGG | - | chr1_1:46208130-46208149 | None:intergenic | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | chr1_1:46208146-46208165 | None:intergenic | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | chr1_1:46208203-46208222 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | chr1_1:46208201-46208220 | Msa0024080:intron | 50.0% | |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | chr1_1:46208314-46208333 | None:intergenic | 50.0% |
| CTAACCCGAAGATCAGTACC+AGG | + | chr1_1:46208314-46208333 | Msa0024080:intron | 50.0% | |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | chr1_1:46208321-46208340 | None:intergenic | 50.0% |
| AATCCCCATGCTCCAACATG+AGG | + | chr1_1:46208367-46208386 | Msa0024080:intron | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | chr1_1:46208368-46208387 | Msa0024080:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | chr1_1:46208373-46208392 | None:intergenic | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | chr1_1:46208375-46208394 | None:intergenic | 50.0% | |
| !! | TTAATTGGCTGCTGGCCTTG+TGG | + | chr1_1:46208703-46208722 | Msa0024080:intron | 50.0% |
| GACTGCAAGACAAAGCCACA+AGG | - | chr1_1:46208721-46208740 | None:intergenic | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | chr1_1:46208756-46208775 | None:intergenic | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | chr1_1:46208958-46208977 | Msa0024080:intron | 50.0% | |
| AACTCACCTGGAAGCAAGGT+AGG | - | chr1_1:46209072-46209091 | None:intergenic | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | chr1_1:46209243-46209262 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | chr1_1:46209253-46209272 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | chr1_1:46209256-46209275 | None:intergenic | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | chr1_1:46209254-46209273 | Msa0024080:CDS | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | chr1_1:46209365-46209384 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | chr1_1:46209379-46209398 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | chr1_1:46209653-46209672 | None:intergenic | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | chr1_1:46209654-46209673 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | chr1_1:46209666-46209685 | None:intergenic | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | chr1_1:46209708-46209727 | Msa0024080:CDS | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | chr1_1:46209713-46209732 | Msa0024080:CDS | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | chr1_1:46209717-46209736 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | chr1_1:46209747-46209766 | None:intergenic | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | chr1_1:46209866-46209885 | Msa0024080:intron | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | chr1_1:46209872-46209891 | None:intergenic | 50.0% | |
| GTAGCTTCCCCTCAATACAG+AGG | - | chr1_1:46210369-46210388 | None:intergenic | 50.0% | |
| GCTGACCCCAAACAACTTCA+AGG | + | chr1_1:46210730-46210749 | Msa0024080:three_prime_UTR | 50.0% | |
| TTGGGATGCCTATTGCACGA+AGG | + | chr1_1:46210898-46210917 | Msa0024080:three_prime_UTR | 50.0% | |
| ACTGCTGTGTTGCGTAGTCA+GGG | + | chr1_1:46211032-46211051 | Msa0024080:three_prime_UTR | 50.0% | |
| GTTACGGTGGAGAATCGGAG+TGG | - | chr1_1:46205293-46205312 | None:intergenic | 55.0% | |
| ACCGGACATTACGGTTACGG+TGG | - | chr1_1:46205306-46205325 | None:intergenic | 55.0% | |
| ACCGTAATGTCCGGTAACGC+TGG | + | chr1_1:46205311-46205330 | Msa0024080:exon | 55.0% | |
| TCATCAGTCGGTGCAAACGG+TGG | - | chr1_1:46205422-46205441 | None:intergenic | 55.0% | |
| GGGGAAGGGCAAACAAGTCA+AGG | + | chr1_1:46206701-46206720 | Msa0024080:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | chr1_1:46207072-46207091 | None:intergenic | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | chr1_1:46207069-46207088 | Msa0024080:CDS | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | chr1_1:46207073-46207092 | Msa0024080:CDS | 55.0% | |
| GAGCCTCAGTGAGCTAGTGA+TGG | - | chr1_1:46207868-46207887 | None:intergenic | 55.0% | |
| CACTAGCTCACTGAGGCTCA+AGG | + | chr1_1:46207869-46207888 | Msa0024080:intron | 55.0% | |
| CAACCACCCTAAGCTTGAGG+AGG | - | chr1_1:46207988-46208007 | None:intergenic | 55.0% | |
| CCTCAACCACCCTAAGCTTG+AGG | - | chr1_1:46207991-46208010 | None:intergenic | 55.0% | |
| CCTCAAGCTTAGGGTGGTTG+AGG | + | chr1_1:46207988-46208007 | Msa0024080:intron | 55.0% | |
| GCTTAGGGTGGTTGAGGCAT+AGG | + | chr1_1:46207994-46208013 | Msa0024080:intron | 55.0% | |
| TTGAGGCATAGGCAGTACCC+TGG | + | chr1_1:46208005-46208024 | Msa0024080:intron | 55.0% | |
| TGAGGCATAGGCAGTACCCT+GGG | + | chr1_1:46208006-46208025 | Msa0024080:intron | 55.0% | |
| CGCATGCCGCAGAAGTAGAA+CGG | + | chr1_1:46208137-46208156 | Msa0024080:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | chr1_1:46209063-46209082 | Msa0024080:CDS | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | chr1_1:46209373-46209392 | Msa0024080:intron | 55.0% | |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | chr1_1:46209652-46209671 | None:intergenic | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | chr1_1:46209865-46209884 | Msa0024080:intron | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | chr1_1:46209867-46209886 | Msa0024080:intron | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | chr1_1:46209871-46209890 | None:intergenic | 55.0% | |
| CACTGCTGTGTTGCGTAGTC+AGG | + | chr1_1:46211031-46211050 | Msa0024080:three_prime_UTR | 55.0% | |
| GGAAGGGAGGGAAGAAGGGA+GGG | - | chr1_1:46205165-46205184 | None:intergenic | 60.0% | |
| AGGAAGGGAGGGAAGAAGGG+AGG | - | chr1_1:46205166-46205185 | None:intergenic | 60.0% | |
| GTCGGAAGGTCCAGCGTTAC+CGG | - | chr1_1:46205324-46205343 | None:intergenic | 60.0% | |
| ATCTGTGCTCCGGTCGGCAT+CGG | - | chr1_1:46205356-46205375 | None:intergenic | 60.0% | |
| TGCCGACCGGAGCACAGATT+CGG | + | chr1_1:46205357-46205376 | Msa0024080:CDS | 60.0% | |
| GCCAGATGACGCTTCAACGG+CGG | - | chr1_1:46205383-46205402 | None:intergenic | 60.0% | |
| AGTCGGTGCAAACGGTGGCT+TGG | - | chr1_1:46205417-46205436 | None:intergenic | 60.0% | |
| TGACACGGTCACGTCCACAC+CGG | - | chr1_1:46206159-46206178 | None:intergenic | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | chr1_1:46206884-46206903 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | chr1_1:46206885-46206904 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | chr1_1:46206892-46206911 | None:intergenic | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | chr1_1:46209236-46209255 | Msa0024080:CDS | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | chr1_1:46209651-46209670 | None:intergenic | 60.0% | |
| GAGGCCACAAACTCCATCGC+CGG | + | chr1_1:46210251-46210270 | Msa0024080:CDS | 60.0% | |
| AGGCCACAAACTCCATCGCC+GGG | + | chr1_1:46210252-46210271 | Msa0024080:CDS | 60.0% | |
| AGTCCCGGCGATGGAGTTTG+TGG | - | chr1_1:46210258-46210277 | None:intergenic | 60.0% | |
| AACTCCATCGCCGGGACTTG+CGG | + | chr1_1:46210260-46210279 | Msa0024080:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+CGG | - | chr1_1:46210273-46210292 | None:intergenic | 60.0% | |
| AACGCTGGACCTTCCGACCG+TGG | + | chr1_1:46205326-46205345 | Msa0024080:CDS | 65.0% | |
| GGCCGAATCTGTGCTCCGGT+CGG | - | chr1_1:46205362-46205381 | None:intergenic | 65.0% | |
| ! | GCCGCCGTTGAAGCGTCATC+TGG | + | chr1_1:46205379-46205398 | Msa0024080:CDS | 65.0% |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | chr1_1:46206886-46206905 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | chr1_1:46206883-46206902 | Msa0024080:CDS | 65.0% | |
| GTGGAGGGGGAACCCTCACA+AGG | - | chr1_1:46209858-46209877 | None:intergenic | 65.0% | |
| ATCGGCGAGCCACGGTCGGA+AGG | - | chr1_1:46205338-46205357 | None:intergenic | 70.0% | |
| CGGCGGCCGAATCTGTGCTC+CGG | - | chr1_1:46205366-46205385 | None:intergenic | 70.0% | |
| GCTTCCGCAAGTCCCGGCGA+TGG | - | chr1_1:46210267-46210286 | None:intergenic | 70.0% | |
| !! | CGGCATCGGCGAGCCACGGT+CGG | - | chr1_1:46205342-46205361 | None:intergenic | 75.0% |
| !! | CGGTCGGCATCGGCGAGCCA+CGG | - | chr1_1:46205346-46205365 | None:intergenic | 75.0% |
| CGTGGCTCGCCGATGCCGAC+CGG | + | chr1_1:46205344-46205363 | Msa0024080:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46205118 | 46211070 | 46205118 | ID=Msa0024080;Name=Msa0024080 |
| chr1_1 | mRNA | 46205118 | 46211070 | 46205118 | ID=Msa0024080-mRNA-1;Parent=Msa0024080;Name=Msa0024080-mRNA-1;_AED=0.15;_eAED=0.15;_QI=199|1|1|1|1|1|14|750|464 |
| chr1_1 | exon | 46205118 | 46205517 | 46205118 | ID=Msa0024080-mRNA-1:exon:13146;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46206583 | 46206772 | 46206583 | ID=Msa0024080-mRNA-1:exon:13147;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46206878 | 46206931 | 46206878 | ID=Msa0024080-mRNA-1:exon:13148;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46207047 | 46207132 | 46207047 | ID=Msa0024080-mRNA-1:exon:13149;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46207223 | 46207311 | 46207223 | ID=Msa0024080-mRNA-1:exon:13150;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46207429 | 46207483 | 46207429 | ID=Msa0024080-mRNA-1:exon:13151;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46208739 | 46208791 | 46208739 | ID=Msa0024080-mRNA-1:exon:13152;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46208875 | 46208925 | 46208875 | ID=Msa0024080-mRNA-1:exon:13153;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46209036 | 46209084 | 46209036 | ID=Msa0024080-mRNA-1:exon:13154;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46209213 | 46209278 | 46209213 | ID=Msa0024080-mRNA-1:exon:13155;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46209375 | 46209451 | 46209375 | ID=Msa0024080-mRNA-1:exon:13156;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46209608 | 46209839 | 46209608 | ID=Msa0024080-mRNA-1:exon:13157;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46210021 | 46210087 | 46210021 | ID=Msa0024080-mRNA-1:exon:13158;Parent=Msa0024080-mRNA-1 |
| chr1_1 | exon | 46210196 | 46211070 | 46210196 | ID=Msa0024080-mRNA-1:exon:13159;Parent=Msa0024080-mRNA-1 |
| chr1_1 | five_prime_UTR | 46205118 | 46205316 | 46205118 | ID=Msa0024080-mRNA-1:five_prime_utr;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46205317 | 46205517 | 46205317 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46206583 | 46206772 | 46206583 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46206878 | 46206931 | 46206878 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46207047 | 46207132 | 46207047 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46207223 | 46207311 | 46207223 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46207429 | 46207483 | 46207429 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46208739 | 46208791 | 46208739 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46208875 | 46208925 | 46208875 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46209036 | 46209084 | 46209036 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46209213 | 46209278 | 46209213 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46209375 | 46209451 | 46209375 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46209608 | 46209839 | 46209608 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46210021 | 46210087 | 46210021 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | CDS | 46210196 | 46210320 | 46210196 | ID=Msa0024080-mRNA-1:cds;Parent=Msa0024080-mRNA-1 |
| chr1_1 | three_prime_UTR | 46210321 | 46211070 | 46210321 | ID=Msa0024080-mRNA-1:three_prime_utr;Parent=Msa0024080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
