Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119870 | XP_024633276.1 | 98.495 | 465 | 6 | 1 | 1 | 465 | 1 | 464 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119870 | sp|Q9FNY0|E2FA_ARATH | 56.809 | 470 | 158 | 13 | 16 | 459 | 30 | 480 | 5.28e-169 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119870 | G7IE33 | 98.280 | 465 | 6 | 2 | 1 | 465 | 1 | 463 | 0.0 | 932 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0119870 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024080 | Msa0119870 | 0.848204 | 7.113867e-60 | -8.615850e-47 |
| Msa0119870 | Msa0163180 | 0.897301 | 1.605041e-76 | -8.615850e-47 |
| Msa0119870 | Msa0389610 | 0.804603 | 1.995799e-49 | -8.615850e-47 |
| Msa0119870 | Msa0527410 | 0.870090 | 1.897933e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119870 | MtrunA17_Chr1g0177351 | 98.280 | 465 | 6 | 2 | 1 | 465 | 1 | 463 | 0.0 | 932 |
| Msa0119870 | MtrunA17_Chr4g0025881 | 59.326 | 445 | 168 | 9 | 25 | 462 | 19 | 457 | 9.39e-174 | 495 |
| Msa0119870 | MtrunA17_Chr3g0142581 | 48.822 | 297 | 137 | 5 | 127 | 423 | 89 | 370 | 1.82e-82 | 259 |
| Msa0119870 | MtrunA17_Chr4g0059551 | 44.776 | 67 | 37 | 0 | 143 | 209 | 17 | 83 | 4.23e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119870 | AT2G36010.1 | 57.051 | 468 | 158 | 12 | 16 | 459 | 30 | 478 | 4.87e-172 | 492 |
| Msa0119870 | AT2G36010.3 | 56.809 | 470 | 158 | 13 | 16 | 459 | 30 | 480 | 5.36e-170 | 487 |
| Msa0119870 | AT5G22220.2 | 53.132 | 463 | 177 | 14 | 27 | 462 | 17 | 466 | 1.97e-141 | 414 |
| Msa0119870 | AT5G22220.3 | 52.677 | 467 | 182 | 14 | 22 | 462 | 10 | 463 | 1.05e-138 | 407 |
| Msa0119870 | AT2G36010.2 | 46.435 | 519 | 164 | 15 | 16 | 459 | 30 | 509 | 1.14e-132 | 393 |
| Msa0119870 | AT1G47870.1 | 47.170 | 318 | 117 | 8 | 105 | 421 | 124 | 391 | 1.32e-78 | 250 |
| Msa0119870 | AT1G47870.2 | 47.170 | 318 | 117 | 8 | 105 | 421 | 123 | 390 | 1.40e-78 | 250 |
| Msa0119870 | AT5G14960.1 | 41.304 | 92 | 49 | 1 | 136 | 227 | 6 | 92 | 1.79e-12 | 68.9 |
| Msa0119870 | AT3G48160.2 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.80e-11 | 65.1 |
| Msa0119870 | AT3G48160.1 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.84e-11 | 65.1 |
Find 185 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGCTGCTGTTGATTCT+AGG | 0.183439 | 1_3:+44294825 | Msa0119870:CDS |
| GAAAATGATCGGAGAGAAAT+TGG | 0.216241 | 1_3:-44294631 | None:intergenic |
| TGTAGAATGATGCTGATTAT+TGG | 0.219679 | 1_3:+44299418 | Msa0119870:intron |
| AGGACATGATTTGCCTTCTT+TGG | 0.234385 | 1_3:-44296108 | None:intergenic |
| TTACCTCTTGCTTCAAGTTC+AGG | 0.236533 | 1_3:+44299062 | Msa0119870:CDS |
| GAGAAATTTGAAGAGATTAA+TGG | 0.237066 | 1_3:+44299020 | Msa0119870:CDS |
| TATCACTAAGTTAGAAAGTA+TGG | 0.250190 | 1_3:+44299749 | Msa0119870:three_prime_UTR |
| TGTGACCGAGGAAGATATTA+AGG | 0.256644 | 1_3:+44298431 | Msa0119870:CDS |
| TCTCAAAATCATCTCTGATT+AGG | 0.268606 | 1_3:-44299708 | None:intergenic |
| GTGCACCCTTGAAGTTGTTT+GGG | 0.275713 | 1_3:-44300149 | None:intergenic |
| AGTGCACCCTTGAAGTTGTT+TGG | 0.292043 | 1_3:-44300150 | None:intergenic |
| CAATTGATGTCTACCTTATC+AGG | 0.299411 | 1_3:+44298816 | Msa0119870:CDS |
| ATATGACATAACTAATGTTT+TGG | 0.312982 | 1_3:+44296619 | Msa0119870:CDS |
| CTCAAAATCATCTCTGATTA+GGG | 0.326359 | 1_3:-44299707 | None:intergenic |
| CACTGCGGTGTTGCGTAGTC+AGG | 0.339596 | 1_3:+44300444 | Msa0119870:three_prime_UTR |
| AATGAGGAAGGGAGGGAAGA+AGG | 0.344191 | 1_3:-44294542 | None:intergenic |
| TATCTTCCTCGGTCACAAAA+AGG | 0.345600 | 1_3:-44298425 | None:intergenic |
| ATGAGGAAGGGAGGGAAGAA+GGG | 0.354112 | 1_3:-44294541 | None:intergenic |
| ACTATGCCACACTTCAAATA+TGG | 0.358238 | 1_3:-44300074 | None:intergenic |
| TAAGGGCCTACCTTGCTTCC+AGG | 0.358343 | 1_3:+44298449 | Msa0119870:CDS |
| AGGAAGGGAGGGAAGAAGGG+AGG | 0.362461 | 1_3:-44294538 | None:intergenic |
| AAAACTCCTTTGTCTGCAAA+AGG | 0.367786 | 1_3:+44296059 | Msa0119870:CDS |
| TGGTGATATCTCTTTGCTTA+AGG | 0.368188 | 1_3:+44296841 | Msa0119870:CDS |
| TGAATGATAATTGAATAATA+AGG | 0.369374 | 1_3:-44300195 | None:intergenic |
| CGACGATCAGTATTTGTATC+TGG | 0.377681 | 1_3:+44300039 | Msa0119870:three_prime_UTR |
| GAAGCAAGAGGTAAGCTTGC+GGG | 0.386616 | 1_3:-44299053 | None:intergenic |
| CTGATAAGGTAGACATCAAT+TGG | 0.387115 | 1_3:-44298815 | None:intergenic |
| TTCATTACATTAGTGTATCC+AGG | 0.390006 | 1_3:-44296026 | None:intergenic |
| ATATCAAGAACAGAATATAT+TGG | 0.392044 | 1_3:+44296666 | Msa0119870:CDS |
| CCAGCAGGAGTGAGCGGAGA+AGG | 0.392492 | 1_3:-44296263 | None:intergenic |
| CCTCAGCACGCTTGAGCAAA+TGG | 0.395797 | 1_3:-44296449 | None:intergenic |
| TCCAGCGTTACCGGACATTA+CGG | 0.398218 | 1_3:-44294687 | None:intergenic |
| TTCCCTAAACTTACTTCCTC+AGG | 0.398706 | 1_3:-44298656 | None:intergenic |
| TGTGTAAGCCTTCGTGCAAT+AGG | 0.398763 | 1_3:-44300319 | None:intergenic |
| AGGGTGCACTGGATATTGTT+AGG | 0.399664 | 1_3:+44300163 | Msa0119870:three_prime_UTR |
| TACCTCTTGCTTCAAGTTCA+GGG | 0.401939 | 1_3:+44299063 | Msa0119870:CDS |
| GTCGGAAGGTCCAGCGTTAC+CGG | 0.403176 | 1_3:-44294696 | None:intergenic |
| AATGTTTCACAAGAGTTTGC+TGG | 0.409766 | 1_3:+44299185 | Msa0119870:CDS |
| AAAATGATCGGAGAGAAATT+GGG | 0.415372 | 1_3:-44294630 | None:intergenic |
| AGTAAATCACCGACTCTCTT+AGG | 0.417798 | 1_3:+44299894 | Msa0119870:three_prime_UTR |
| GTCAGGGACATTCGATCAAC+AGG | 0.420494 | 1_3:+44300461 | Msa0119870:three_prime_UTR |
| TTCTGACCAGCATTTGAGAT+AGG | 0.420653 | 1_3:-44296137 | None:intergenic |
| GGAAGTTGACAACCTTTCTC+TGG | 0.430841 | 1_3:+44298127 | Msa0119870:CDS |
| TAAAGCAGCAGAAACTTTGC+AGG | 0.430868 | 1_3:+44296491 | Msa0119870:CDS |
| AAACTCCTTTGTCTGCAAAA+GGG | 0.431635 | 1_3:+44296060 | Msa0119870:CDS |
| GCCGCCGTTGAAGCGTCATC+TGG | 0.433324 | 1_3:+44294754 | Msa0119870:CDS |
| ATCTGTGCTCCGGTCGGCAT+CGG | 0.435761 | 1_3:-44294728 | None:intergenic |
| AATCGGAGTGGAAACGGAAA+TGG | 0.441749 | 1_3:-44294653 | None:intergenic |
| GGAGATATAGAATCATTCTA+AGG | 0.456891 | 1_3:+44298780 | Msa0119870:CDS |
| CTCGAGAGCATTTCAAAGTC+AGG | 0.458107 | 1_3:-44299633 | None:intergenic |
| GCATAACAGCTAATGTTGAT+TGG | 0.459320 | 1_3:+44299589 | Msa0119870:intron |
| TGTCGTTATGACAGTTCCTT+AGG | 0.460009 | 1_3:+44296290 | Msa0119870:CDS |
| TCCTTTCCACTGCATTCAGC+AGG | 0.460324 | 1_3:-44299116 | None:intergenic |
| GTGACCGAGGAAGATATTAA+GGG | 0.460410 | 1_3:+44298432 | Msa0119870:CDS |
| GTTATCATCCTCTGTATTGA+GGG | 0.462368 | 1_3:+44299771 | Msa0119870:three_prime_UTR |
| TTACGGTTACGGTGGAGAAT+CGG | 0.466832 | 1_3:-44294670 | None:intergenic |
| CCTTCTCCGCTCACTCCTGC+TGG | 0.469787 | 1_3:+44296263 | Msa0119870:CDS |
| GCAAGTAGTTATACCTGATA+AGG | 0.470864 | 1_3:-44298829 | None:intergenic |
| ATGTTTCACAAGAGTTTGCT+GGG | 0.474909 | 1_3:+44299186 | Msa0119870:CDS |
| GGAAGGGAGGGAAGAAGGGA+GGG | 0.475986 | 1_3:-44294537 | None:intergenic |
| TGCCGACCGGAGCACAGATT+CGG | 0.476300 | 1_3:+44294732 | Msa0119870:CDS |
| AAGAGAGAAGAAAATGAGGA+AGG | 0.476565 | 1_3:-44294554 | None:intergenic |
| GCTTGAAATCATATAGCAAA+TGG | 0.476786 | 1_3:-44300384 | None:intergenic |
| ATCATTCTAAGGAGCACAAT+GGG | 0.480097 | 1_3:+44298791 | Msa0119870:CDS |
| GGGGAAGGGCAAACAAGTCA+AGG | 0.482335 | 1_3:+44296081 | Msa0119870:CDS |
| AAACTTACTTCCTCAGGATC+AGG | 0.482688 | 1_3:-44298650 | None:intergenic |
| TACTCATCAGTCGGTGCAAA+CGG | 0.485816 | 1_3:-44294797 | None:intergenic |
| AGAAGAAAATGAGGAAGGGA+GGG | 0.485887 | 1_3:-44294549 | None:intergenic |
| GTGGAGAATCGGAGTGGAAA+CGG | 0.485991 | 1_3:-44294659 | None:intergenic |
| GCTGACCCCAAACAACTTCA+AGG | 0.487739 | 1_3:+44300143 | Msa0119870:three_prime_UTR |
| TGAGCAACAAGTGACAGAAA+TGG | 0.489280 | 1_3:+44299091 | Msa0119870:CDS |
| GTCTCTGCTCTTCCAGAGAA+AGG | 0.490737 | 1_3:-44298139 | None:intergenic |
| AGAGAAGAGAGAAGAAAATG+AGG | 0.496530 | 1_3:-44294558 | None:intergenic |
| GAGAAGAAAATGAGGAAGGG+AGG | 0.496878 | 1_3:-44294550 | None:intergenic |
| GGTTATCATCCTCTGTATTG+AGG | 0.501922 | 1_3:+44299770 | Msa0119870:three_prime_UTR |
| AGTCCCGGCGATGGAGTTTG+TGG | 0.503718 | 1_3:-44299657 | None:intergenic |
| AGCCGTTATTGTTAGATCTC+CGG | 0.504106 | 1_3:+44294871 | Msa0119870:CDS |
| GTTTCGAAAGCATCTGAGGA+TGG | 0.506163 | 1_3:+44300359 | Msa0119870:three_prime_UTR |
| CCAGCATTTGAGATAGGTGT+TGG | 0.506282 | 1_3:-44296131 | None:intergenic |
| AACTCCTTTGTCTGCAAAAG+GGG | 0.506592 | 1_3:+44296061 | Msa0119870:CDS |
| GGAATTGAATCTTCTACGCC+TGG | 0.513959 | 1_3:+44296809 | Msa0119870:CDS |
| AAGGTCATAAAGCGGAAGAA+TGG | 0.515250 | 1_3:+44295960 | Msa0119870:intron |
| AACTCCATCGCCGGGACTTG+CGG | 0.515372 | 1_3:+44299662 | Msa0119870:CDS |
| AAACAACTTCAAGGGTGCAC+TGG | 0.515506 | 1_3:+44300152 | Msa0119870:three_prime_UTR |
| AGAGAGAAGAAAATGAGGAA+GGG | 0.520744 | 1_3:-44294553 | None:intergenic |
| CAGCAGGAGTGAGCGGAGAA+GGG | 0.521252 | 1_3:-44296262 | None:intergenic |
| TGAGAAGAGAGCAGAGCTTG+AGG | 0.521585 | 1_3:-44299146 | None:intergenic |
| CGTGGCTCGCCGATGCCGAC+CGG | 0.525876 | 1_3:+44294719 | Msa0119870:CDS |
| GGCCGAATCTGTGCTCCGGT+CGG | 0.529279 | 1_3:-44294734 | None:intergenic |
| AGTCGGTGCAAACGGTGGCT+TGG | 0.531462 | 1_3:-44294789 | None:intergenic |
| CGGCATCGGCGAGCCACGGT+CGG | 0.533060 | 1_3:-44294714 | None:intergenic |
| AAATGATCGGAGAGAAATTG+GGG | 0.534132 | 1_3:-44294629 | None:intergenic |
| GATGGTGCTTCCGCAAGTCC+CGG | 0.535364 | 1_3:-44299672 | None:intergenic |
| AGGCCACAAACTCCATCGCC+GGG | 0.535755 | 1_3:+44299654 | Msa0119870:CDS |
| AAGTCAAGGGCATCCAAAGA+AGG | 0.536537 | 1_3:+44296095 | Msa0119870:CDS |
| GCTTCCGCAAGTCCCGGCGA+TGG | 0.539022 | 1_3:-44299666 | None:intergenic |
| CGGTCGGCATCGGCGAGCCA+CGG | 0.539391 | 1_3:-44294718 | None:intergenic |
| ACCGTAATGTCCGGTAACGC+TGG | 0.543022 | 1_3:+44294686 | Msa0119870:exon |
| CACCGGAGATCTAACAATAA+CGG | 0.545488 | 1_3:-44294873 | None:intergenic |
| ATCGGCGAGCCACGGTCGGA+AGG | 0.546657 | 1_3:-44294710 | None:intergenic |
| CTATACTATAGGTGCAAAAG+AGG | 0.547054 | 1_3:+44296591 | Msa0119870:intron |
| GAGGCCACAAACTCCATCGC+CGG | 0.547101 | 1_3:+44299653 | Msa0119870:CDS |
| AAGCAAGAGGTAAGCTTGCG+GGG | 0.551818 | 1_3:-44299052 | None:intergenic |
| AGCAGGAGTGAGCGGAGAAG+GGG | 0.552395 | 1_3:-44296261 | None:intergenic |
| TTGCTCAAGCGTGCTGAGGA+TGG | 0.554722 | 1_3:+44296453 | Msa0119870:CDS |
| CAAAAGTCAAGTAACAGCCC+TGG | 0.555813 | 1_3:+44296008 | Msa0119870:CDS |
| TATTTGAAGTGTGGCATAGT+GGG | 0.556790 | 1_3:+44300077 | Msa0119870:three_prime_UTR |
| TGCACCCTTGAAGTTGTTTG+GGG | 0.558626 | 1_3:-44300148 | None:intergenic |
| ATCTTCTACGCCTGGTAATG+TGG | 0.558876 | 1_3:+44296817 | Msa0119870:CDS |
| AGAGACTAGATGATCAGATA+AGG | 0.559999 | 1_3:+44298156 | Msa0119870:CDS |
| CGGCGGCCGAATCTGTGCTC+CGG | 0.564361 | 1_3:-44294738 | None:intergenic |
| TCATAACGACAGCTACCAGC+AGG | 0.570121 | 1_3:-44296278 | None:intergenic |
| TTTGTTTCGGATAGATGTGG+AGG | 0.571007 | 1_3:-44294511 | None:intergenic |
| TAGGCCCTTAATATCTTCCT+CGG | 0.571156 | 1_3:-44298436 | None:intergenic |
| CCAACACCTATCTCAAATGC+TGG | 0.572738 | 1_3:+44296131 | Msa0119870:CDS |
| TATTAGCCATATTTGAAGTG+TGG | 0.573232 | 1_3:+44300068 | Msa0119870:three_prime_UTR |
| GACCCTGAACTTGAAGCAAG+AGG | 0.573741 | 1_3:-44299065 | None:intergenic |
| GCATTTGAGATAGGTGTTGG+AGG | 0.574157 | 1_3:-44296128 | None:intergenic |
| TAGTAGACATACTAAGCTTG+TGG | 0.576638 | 1_3:+44299930 | Msa0119870:three_prime_UTR |
| GTTACCGGACATTACGGTTA+CGG | 0.578279 | 1_3:-44294681 | None:intergenic |
| TCATTACATTAGTGTATCCA+GGG | 0.578943 | 1_3:-44296025 | None:intergenic |
| ACAGCTAATGTTGATTGGAG+TGG | 0.580563 | 1_3:+44299594 | Msa0119870:intron |
| AACGCCAGATGACGCTTCAA+CGG | 0.580618 | 1_3:-44294758 | None:intergenic |
| AGCATATCTAAGTGGGAACA+AGG | 0.581044 | 1_3:+44300404 | Msa0119870:three_prime_UTR |
| GCACTGGATATTGTTAGGAC+AGG | 0.583065 | 1_3:+44300168 | Msa0119870:three_prime_UTR |
| TTTCGAAAGCATCTGAGGAT+GGG | 0.583104 | 1_3:+44300360 | Msa0119870:three_prime_UTR |
| AAGTTAGCATAACAGATATG+TGG | 0.583522 | 1_3:+44299457 | Msa0119870:CDS |
| AAAGAACTCACCTGGAAGCA+AGG | 0.584852 | 1_3:-44298459 | None:intergenic |
| ATATTTGAAGTGTGGCATAG+TGG | 0.584932 | 1_3:+44300076 | Msa0119870:three_prime_UTR |
| ATATCACCATCCACATTACC+AGG | 0.586810 | 1_3:-44296827 | None:intergenic |
| GATTTCAAGCATATCTAAGT+GGG | 0.590275 | 1_3:+44300397 | Msa0119870:three_prime_UTR |
| GCCAGATGACGCTTCAACGG+CGG | 0.590423 | 1_3:-44294755 | None:intergenic |
| TGATTTCAAGCATATCTAAG+TGG | 0.590546 | 1_3:+44300396 | Msa0119870:three_prime_UTR |
| ATACTTACATCAGCATCTGA+AGG | 0.592246 | 1_3:-44299227 | None:intergenic |
| TACTATAGGTGCAAAAGAGG+AGG | 0.592536 | 1_3:+44296594 | Msa0119870:intron |
| AAAGTATGATACTCATCAGT+CGG | 0.596002 | 1_3:-44294806 | None:intergenic |
| AACGCTGGACCTTCCGACCG+TGG | 0.596010 | 1_3:+44294701 | Msa0119870:CDS |
| TTGTTTCGGATAGATGTGGA+GGG | 0.596906 | 1_3:-44294510 | None:intergenic |
| AACGGCTTCATTGACATGAT+CGG | 0.597493 | 1_3:-44294855 | None:intergenic |
| CAGCTACCAGCAGGAGTGAG+CGG | 0.598273 | 1_3:-44296269 | None:intergenic |
| CTCAGGATCAGGAACTTCCA+AGG | 0.601233 | 1_3:-44298639 | None:intergenic |
| TCTACGCCTGGTAATGTGGA+TGG | 0.603037 | 1_3:+44296821 | Msa0119870:CDS |
| CTTGGAAGTTCCTGATCCTG+AGG | 0.604439 | 1_3:+44298640 | Msa0119870:CDS |
| AAACGGAAATGGAAAATGAT+CGG | 0.604850 | 1_3:-44294642 | None:intergenic |
| AGCTCCGCATGGAACCACCT+TGG | 0.605657 | 1_3:+44298622 | Msa0119870:CDS |
| TCCACCGTAACCGTAATGTC+CGG | 0.609815 | 1_3:+44294677 | Msa0119870:exon |
| AATGGAATGAATGAAAGTGA+AGG | 0.612614 | 1_3:+44295978 | Msa0119870:CDS |
| GATAGTTTCGAAAGCATCTG+AGG | 0.614109 | 1_3:+44300355 | Msa0119870:three_prime_UTR |
| CTGACTTTGAAATGCTCTCG+AGG | 0.615106 | 1_3:+44299634 | Msa0119870:CDS |
| AACTCACCTGGAAGCAAGGT+AGG | 0.616174 | 1_3:-44298455 | None:intergenic |
| TACTTACATCAGCATCTGAA+GGG | 0.619198 | 1_3:-44299226 | None:intergenic |
| AGCTAGCCTTGTGAATGTTG+AGG | 0.621713 | 1_3:+44299820 | Msa0119870:three_prime_UTR |
| CTGACCCCAAACAACTTCAA+GGG | 0.624056 | 1_3:+44300144 | Msa0119870:three_prime_UTR |
| ACTGCGGTGTTGCGTAGTCA+GGG | 0.624854 | 1_3:+44300445 | Msa0119870:three_prime_UTR |
| TCTCCGCTGTAGTTCGTCAA+CGG | 0.627564 | 1_3:-44298762 | None:intergenic |
| CCATTTGCTCAAGCGTGCTG+AGG | 0.631281 | 1_3:+44296449 | Msa0119870:CDS |
| ATAGCAATCAAAGCTCCGCA+TGG | 0.631816 | 1_3:+44298611 | Msa0119870:CDS |
| CAGCATCCTCAACATTCACA+AGG | 0.636720 | 1_3:-44299826 | None:intergenic |
| AATCATTCTAAGGAGCACAA+TGG | 0.638536 | 1_3:+44298790 | Msa0119870:CDS |
| AGCAAGAGGTAAGCTTGCGG+GGG | 0.640114 | 1_3:-44299051 | None:intergenic |
| GTTTCACAAGAGTTTGCTGG+GGG | 0.641606 | 1_3:+44299188 | Msa0119870:CDS |
| TCGTTTATGCCTAAGAGAGT+CGG | 0.643067 | 1_3:-44299903 | None:intergenic |
| ACTCCTTTGTCTGCAAAAGG+GGG | 0.643497 | 1_3:+44296062 | Msa0119870:CDS |
| TACTGCATGAAATGCAAGGT+AGG | 0.651467 | 1_3:+44300010 | Msa0119870:three_prime_UTR |
| TTGGGATGCCTATTGCACGA+AGG | 0.652524 | 1_3:+44300311 | Msa0119870:three_prime_UTR |
| ACCTGCTGAATGCAGTGGAA+AGG | 0.654494 | 1_3:+44299115 | Msa0119870:CDS |
| GCAAGAGGTAAGCTTGCGGG+GGG | 0.656380 | 1_3:-44299050 | None:intergenic |
| GGGAAGGGCAAACAAGTCAA+GGG | 0.657296 | 1_3:+44296082 | Msa0119870:CDS |
| TGAAGCAAGAGGTAAGCTTG+CGG | 0.662777 | 1_3:-44299054 | None:intergenic |
| ATGGTACCTGCTGAATGCAG+TGG | 0.669987 | 1_3:+44299110 | Msa0119870:CDS |
| TCATCAGTCGGTGCAAACGG+TGG | 0.672671 | 1_3:-44294794 | None:intergenic |
| TTAGGGTTAGCTACAGTCGA+TGG | 0.674010 | 1_3:-44299690 | None:intergenic |
| AGGCCGTTGACGAACTACAG+CGG | 0.677542 | 1_3:+44298759 | Msa0119870:intron |
| TTATCATCCTCTGTATTGAG+GGG | 0.677777 | 1_3:+44299772 | Msa0119870:three_prime_UTR |
| GTAGCTTCCCCTCAATACAG+AGG | 0.684688 | 1_3:-44299779 | None:intergenic |
| TGTTTCACAAGAGTTTGCTG+GGG | 0.692916 | 1_3:+44299187 | Msa0119870:CDS |
| TAATGTTGATTGGAGTGGAG+TGG | 0.694763 | 1_3:+44299599 | Msa0119870:CDS |
| TTGCTACTGCATGAAATGCA+AGG | 0.701504 | 1_3:+44300006 | Msa0119870:three_prime_UTR |
| GTTACGGTGGAGAATCGGAG+TGG | 0.705240 | 1_3:-44294665 | None:intergenic |
| AATGATCGGAGAGAAATTGG+GGG | 0.706493 | 1_3:-44294628 | None:intergenic |
| ACCGGACATTACGGTTACGG+TGG | 0.713898 | 1_3:-44294678 | None:intergenic |
| ACTTCCAAGGTGGTTCCATG+CGG | 0.714996 | 1_3:-44298626 | None:intergenic |
| GGTGGTGTAAGGTCATAAAG+CGG | 0.723032 | 1_3:+44295952 | Msa0119870:intron |
| AGGATCAGGAACTTCCAAGG+TGG | 0.735853 | 1_3:-44298636 | None:intergenic |
| TGAATGTTGAGGATGCTGTG+AGG | 0.792058 | 1_3:+44299831 | Msa0119870:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTAAATTATTAC+CGG | + | chr1_3:44295519-44295538 | Msa0119870:intron | 10.0% |
| !!! | TAGAAAAAATGTATATATTT+TGG | - | chr1_3:44296720-44296739 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | chr1_3:44299358-44299377 | Msa0119870:intron | 10.0% |
| !! | GGTAATAATTTAAAAAGAAA+TGG | - | chr1_3:44295520-44295539 | None:intergenic | 15.0% |
| !!! | CAAATCTTTTGTATAAAATA+CGG | - | chr1_3:44296518-44296537 | None:intergenic | 15.0% |
| !! | TAATAAAATGTATGTATTTC+TGG | - | chr1_3:44297977-44297996 | None:intergenic | 15.0% |
| !!! | AATAATAATATTTTTCCTTC+TGG | - | chr1_3:44298362-44298381 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCCTTTTTGAAA+AGG | + | chr1_3:44300102-44300121 | Msa0119870:three_prime_UTR | 15.0% |
| !! | TGAATGATAATTGAATAATA+AGG | - | chr1_3:44300198-44300217 | None:intergenic | 15.0% |
| !!! | TTATTTTTTGTGGAAATAGT+TGG | + | chr1_3:44295032-44295051 | Msa0119870:intron | 20.0% |
| !!! | TTTTACATGCTTTTGATTTT+TGG | + | chr1_3:44295062-44295081 | Msa0119870:intron | 20.0% |
| !! | CAACTTGGTTTAATTAAAAT+TGG | + | chr1_3:44295199-44295218 | Msa0119870:intron | 20.0% |
| !! | TTGGTTTAATTAAAATTGGA+GGG | + | chr1_3:44295203-44295222 | Msa0119870:intron | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | chr1_3:44296169-44296188 | None:intergenic | 20.0% |
| !!! | CGTATTTTATACAAAAGATT+TGG | + | chr1_3:44296516-44296535 | Msa0119870:intron | 20.0% |
| !! | AGAAAAAGTAACAGATATAT+TGG | - | chr1_3:44296542-44296561 | None:intergenic | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | chr1_3:44296580-44296599 | Msa0119870:intron | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | chr1_3:44296619-44296638 | Msa0119870:CDS | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | chr1_3:44296666-44296685 | Msa0119870:CDS | 20.0% |
| !!! | TTGTTTTCTCATATTGATAA+GGG | + | chr1_3:44297122-44297141 | Msa0119870:intron | 20.0% |
| !! | TATTAATTAGAATGACTTAG+TGG | + | chr1_3:44297992-44298011 | Msa0119870:intron | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | chr1_3:44298322-44298341 | None:intergenic | 20.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | chr1_3:44298323-44298342 | None:intergenic | 20.0% |
| !!! | AACAATGTTGATAATAACAA+TGG | - | chr1_3:44298511-44298530 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | chr1_3:44298979-44298998 | None:intergenic | 20.0% |
| !!! | TTTGTATTGATTAAACACTT+CGG | + | chr1_3:44299318-44299337 | Msa0119870:intron | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | chr1_3:44299497-44299516 | None:intergenic | 20.0% |
| !!! | GCTTTTGATTTTTGGTTTAT+CGG | + | chr1_3:44295070-44295089 | Msa0119870:intron | 25.0% |
| ! | TTAAAATTATTTCCGAACAC+TGG | + | chr1_3:44295167-44295186 | Msa0119870:intron | 25.0% |
| ! | CTTGGTTTAATTAAAATTGG+AGG | + | chr1_3:44295202-44295221 | Msa0119870:intron | 25.0% |
| !! | TTTTTAAATTATTACCGGTG+TGG | + | chr1_3:44295524-44295543 | Msa0119870:intron | 25.0% |
| !! | TTATGAACTCTTTTCATTTG+TGG | + | chr1_3:44295726-44295745 | Msa0119870:intron | 25.0% |
| !! | TGTATGATTAATTGCTACTT+TGG | + | chr1_3:44295822-44295841 | Msa0119870:intron | 25.0% |
| ! | CTTATTGTTTATGAACATGT+TGG | + | chr1_3:44295931-44295950 | Msa0119870:intron | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | chr1_3:44296168-44296187 | None:intergenic | 25.0% |
| ! | TTGAACATAACGTAGATAAA+TGG | - | chr1_3:44296181-44296200 | None:intergenic | 25.0% |
| ! | TATAGTTTCTTATGACATGT+AGG | + | chr1_3:44296236-44296255 | Msa0119870:intron | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | chr1_3:44296358-44296377 | None:intergenic | 25.0% |
| ! | AACTTATACAAAAACTTCAC+AGG | + | chr1_3:44296405-44296424 | Msa0119870:intron | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | chr1_3:44296573-44296592 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | chr1_3:44296906-44296925 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | chr1_3:44297029-44297048 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | chr1_3:44297038-44297057 | Msa0119870:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | chr1_3:44297053-44297072 | Msa0119870:intron | 25.0% |
| !!! | GTTGTTTTCTCATATTGATA+AGG | + | chr1_3:44297121-44297140 | Msa0119870:intron | 25.0% |
| ! | TTACAATATTCAACTAGTTG+TGG | - | chr1_3:44297650-44297669 | None:intergenic | 25.0% |
| ! | TGAATATTGTAACTCAAACT+AGG | + | chr1_3:44297658-44297677 | Msa0119870:intron | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | chr1_3:44297788-44297807 | Msa0119870:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | chr1_3:44297827-44297846 | Msa0119870:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | chr1_3:44297828-44297847 | Msa0119870:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | chr1_3:44297851-44297870 | Msa0119870:intron | 25.0% |
| ! | GATTATGTATATCAAGTTAG+AGG | + | chr1_3:44297900-44297919 | Msa0119870:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | chr1_3:44298240-44298259 | Msa0119870:intron | 25.0% |
| !! | ATAATATTTTTCCTTCTGGA+AGG | - | chr1_3:44298358-44298377 | None:intergenic | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | chr1_3:44298400-44298419 | Msa0119870:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | chr1_3:44298404-44298423 | None:intergenic | 25.0% |
| !!! | GTTGATAATAACAATGGAAA+AGG | - | chr1_3:44298505-44298524 | None:intergenic | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | chr1_3:44299020-44299039 | Msa0119870:CDS | 25.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | chr1_3:44299351-44299370 | None:intergenic | 25.0% |
| ! | TATCACTAAGTTAGAAAGTA+TGG | + | chr1_3:44299749-44299768 | Msa0119870:three_prime_UTR | 25.0% |
| !! | AATTTTGTTTCGGATAGATG+TGG | - | chr1_3:44294517-44294536 | None:intergenic | 30.0% |
| AAAATGATCGGAGAGAAATT+GGG | - | chr1_3:44294633-44294652 | None:intergenic | 30.0% | |
| AAACGGAAATGGAAAATGAT+CGG | - | chr1_3:44294645-44294664 | None:intergenic | 30.0% | |
| AAAGTATGATACTCATCAGT+CGG | - | chr1_3:44294809-44294828 | None:intergenic | 30.0% | |
| !! | GCTTTGAAATTTCACTAGTA+TGG | + | chr1_3:44295236-44295255 | Msa0119870:intron | 30.0% |
| ATATGCTTGTTCTTGTTAAC+TGG | + | chr1_3:44295347-44295366 | Msa0119870:intron | 30.0% | |
| AGTTCATTAAGTCTAATGCT+TGG | + | chr1_3:44295402-44295421 | Msa0119870:intron | 30.0% | |
| TGATTATGTGCAAAAATGTG+TGG | + | chr1_3:44295580-44295599 | Msa0119870:intron | 30.0% | |
| ! | TGCAAAAATGTGTGGATTTT+CGG | + | chr1_3:44295588-44295607 | Msa0119870:intron | 30.0% |
| ACATCAATATATCGGTGAAA+TGG | - | chr1_3:44295873-44295892 | None:intergenic | 30.0% | |
| ACACACACACATCAATATAT+CGG | - | chr1_3:44295881-44295900 | None:intergenic | 30.0% | |
| ATTGTTTATGAACATGTTGG+TGG | + | chr1_3:44295934-44295953 | Msa0119870:intron | 30.0% | |
| AATGGAATGAATGAAAGTGA+AGG | + | chr1_3:44295978-44295997 | Msa0119870:CDS | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | chr1_3:44296028-44296047 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | chr1_3:44296029-44296048 | None:intergenic | 30.0% | |
| TCATAAGAAACTATAAGCTG+GGG | - | chr1_3:44296231-44296250 | None:intergenic | 30.0% | |
| GTCATAAGAAACTATAAGCT+GGG | - | chr1_3:44296232-44296251 | None:intergenic | 30.0% | |
| TGTCATAAGAAACTATAAGC+TGG | - | chr1_3:44296233-44296252 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | chr1_3:44296309-44296328 | None:intergenic | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | chr1_3:44296350-44296369 | None:intergenic | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | chr1_3:44296351-44296370 | None:intergenic | 30.0% | |
| !! | GACATAACTAATGTTTTGGA+AGG | + | chr1_3:44296623-44296642 | Msa0119870:CDS | 30.0% |
| AATTCTTACATCAAACCTTG+TGG | + | chr1_3:44296778-44296797 | Msa0119870:intron | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | chr1_3:44296966-44296985 | None:intergenic | 30.0% | |
| AAAGGATAGTATCAATCTCT+TGG | + | chr1_3:44297071-44297090 | Msa0119870:intron | 30.0% | |
| AAGGATAGTATCAATCTCTT+GGG | + | chr1_3:44297072-44297091 | Msa0119870:intron | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | chr1_3:44297404-44297423 | None:intergenic | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | chr1_3:44297627-44297646 | None:intergenic | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | chr1_3:44298164-44298183 | Msa0119870:intron | 30.0% | |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | chr1_3:44298185-44298204 | Msa0119870:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | chr1_3:44298239-44298258 | Msa0119870:intron | 30.0% |
| TTGCATTTCCCTGTTAATAA+TGG | - | chr1_3:44298251-44298270 | None:intergenic | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | chr1_3:44298739-44298758 | Msa0119870:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | chr1_3:44298780-44298799 | Msa0119870:CDS | 30.0% | |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | chr1_3:44298863-44298882 | None:intergenic | 30.0% |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | chr1_3:44298967-44298986 | Msa0119870:intron | 30.0% |
| CTCTTCAAATTGACTGAAAA+CGG | - | chr1_3:44299003-44299022 | None:intergenic | 30.0% | |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | chr1_3:44299418-44299437 | Msa0119870:intron | 30.0% |
| AAGTTAGCATAACAGATATG+TGG | + | chr1_3:44299457-44299476 | Msa0119870:CDS | 30.0% | |
| CTCAAAATCATCTCTGATTA+GGG | - | chr1_3:44299710-44299729 | None:intergenic | 30.0% | |
| TCTCAAAATCATCTCTGATT+AGG | - | chr1_3:44299711-44299730 | None:intergenic | 30.0% | |
| ! | TATTAGCCATATTTGAAGTG+TGG | + | chr1_3:44300068-44300087 | Msa0119870:three_prime_UTR | 30.0% |
| AGCAAAATGACAGAAAAAAC+GGG | - | chr1_3:44300285-44300304 | None:intergenic | 30.0% | |
| GAGCAAAATGACAGAAAAAA+CGG | - | chr1_3:44300286-44300305 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTGCTCTATCTTT+GGG | + | chr1_3:44300293-44300312 | Msa0119870:three_prime_UTR | 30.0% |
| GCTTGAAATCATATAGCAAA+TGG | - | chr1_3:44300387-44300406 | None:intergenic | 30.0% | |
| TGATTTCAAGCATATCTAAG+TGG | + | chr1_3:44300396-44300415 | Msa0119870:three_prime_UTR | 30.0% | |
| GATTTCAAGCATATCTAAGT+GGG | + | chr1_3:44300397-44300416 | Msa0119870:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCTTCAATGCACTG+CGG | + | chr1_3:44300429-44300448 | Msa0119870:three_prime_UTR | 30.0% |
| AGAGAGAAGAAAATGAGGAA+GGG | - | chr1_3:44294556-44294575 | None:intergenic | 35.0% | |
| AAGAGAGAAGAAAATGAGGA+AGG | - | chr1_3:44294557-44294576 | None:intergenic | 35.0% | |
| AGAGAAGAGAGAAGAAAATG+AGG | - | chr1_3:44294561-44294580 | None:intergenic | 35.0% | |
| AAATGATCGGAGAGAAATTG+GGG | - | chr1_3:44294632-44294651 | None:intergenic | 35.0% | |
| GAAAATGATCGGAGAGAAAT+TGG | - | chr1_3:44294634-44294653 | None:intergenic | 35.0% | |
| TTGAATTCAGATCCAGTGTT+CGG | - | chr1_3:44295182-44295201 | None:intergenic | 35.0% | |
| ! | AAAATTGGAGGGATTTTCTG+AGG | + | chr1_3:44295214-44295233 | Msa0119870:intron | 35.0% |
| ! | TGTGTCGAAAACATTTTCTG+CGG | + | chr1_3:44295275-44295294 | Msa0119870:intron | 35.0% |
| ATTAAGTCTAATGCTTGGCT+CGG | + | chr1_3:44295407-44295426 | Msa0119870:intron | 35.0% | |
| ! | AAAAATGTGTGGATTTTCGG+CGG | + | chr1_3:44295591-44295610 | Msa0119870:intron | 35.0% |
| CGGATAAGATTACTGTACAT+TGG | + | chr1_3:44295611-44295630 | Msa0119870:intron | 35.0% | |
| TTCATAAACTTTGAGTGCCT+TGG | + | chr1_3:44295693-44295712 | Msa0119870:intron | 35.0% | |
| TTCATAAGTGAGCATTACCA+AGG | - | chr1_3:44295713-44295732 | None:intergenic | 35.0% | |
| TTGATGTGTGTGTGTATCTT+TGG | + | chr1_3:44295886-44295905 | Msa0119870:intron | 35.0% | |
| AAAACTCCTTTGTCTGCAAA+AGG | + | chr1_3:44296059-44296078 | Msa0119870:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | chr1_3:44296060-44296079 | Msa0119870:CDS | 35.0% | |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | chr1_3:44296299-44296318 | Msa0119870:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | chr1_3:44296593-44296612 | None:intergenic | 35.0% |
| CTATACTATAGGTGCAAAAG+AGG | + | chr1_3:44296591-44296610 | Msa0119870:intron | 35.0% | |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | chr1_3:44296629-44296648 | Msa0119870:CDS | 35.0% |
| TGGTGATATCTCTTTGCTTA+AGG | + | chr1_3:44296841-44296860 | Msa0119870:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | chr1_3:44296896-44296915 | None:intergenic | 35.0% | |
| TGGAAACAAATATACACGAG+CGG | - | chr1_3:44296946-44296965 | None:intergenic | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | chr1_3:44296980-44296999 | Msa0119870:intron | 35.0% | |
| AGTATCAATCTCTTGGGATA+AGG | + | chr1_3:44297078-44297097 | Msa0119870:intron | 35.0% | |
| GTATCAATCTCTTGGGATAA+GGG | + | chr1_3:44297079-44297098 | Msa0119870:intron | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | chr1_3:44297405-44297424 | None:intergenic | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | chr1_3:44297482-44297501 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | chr1_3:44297487-44297506 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | chr1_3:44297628-44297647 | None:intergenic | 35.0% | |
| AGCGTCAATATGTTGTGATA+AGG | + | chr1_3:44297782-44297801 | Msa0119870:intron | 35.0% | |
| CCAATTAACAACATGTTGCA+TGG | - | chr1_3:44298077-44298096 | None:intergenic | 35.0% | |
| CCATGCAACATGTTGTTAAT+TGG | + | chr1_3:44298074-44298093 | Msa0119870:intron | 35.0% | |
| ACATGTTGTTAATTGGCTGT+TGG | + | chr1_3:44298081-44298100 | Msa0119870:intron | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | chr1_3:44298156-44298175 | Msa0119870:CDS | 35.0% | |
| ACTAAATGGGAGATTACTTC+TGG | - | chr1_3:44298309-44298328 | None:intergenic | 35.0% | |
| !! | ATATTTTTCCTTCTGGAAGG+AGG | - | chr1_3:44298355-44298374 | None:intergenic | 35.0% |
| GTCACAAAAAGGAACCTAAA+AGG | - | chr1_3:44298417-44298436 | None:intergenic | 35.0% | |
| AACCTCAATAACAGCATGAA+AGG | - | chr1_3:44298541-44298560 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | chr1_3:44298654-44298673 | Msa0119870:intron | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | chr1_3:44298671-44298690 | Msa0119870:intron | 35.0% | |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | chr1_3:44298712-44298731 | Msa0119870:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | chr1_3:44298790-44298809 | Msa0119870:CDS | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | chr1_3:44298791-44298810 | Msa0119870:CDS | 35.0% |
| CTGATAAGGTAGACATCAAT+TGG | - | chr1_3:44298818-44298837 | None:intergenic | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | chr1_3:44298816-44298835 | Msa0119870:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | chr1_3:44298832-44298851 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | chr1_3:44299185-44299204 | Msa0119870:CDS | 35.0% | |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | chr1_3:44299186-44299205 | Msa0119870:CDS | 35.0% |
| TACTTACATCAGCATCTGAA+GGG | - | chr1_3:44299229-44299248 | None:intergenic | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | chr1_3:44299230-44299249 | None:intergenic | 35.0% | |
| TTGATTAAACACTTCGGATG+TGG | + | chr1_3:44299324-44299343 | Msa0119870:intron | 35.0% | |
| ATCAACATTAGCTGTTATGC+AGG | - | chr1_3:44299589-44299608 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | chr1_3:44299589-44299608 | Msa0119870:intron | 35.0% | |
| GTTATCATCCTCTGTATTGA+GGG | + | chr1_3:44299771-44299790 | Msa0119870:three_prime_UTR | 35.0% | |
| TTATCATCCTCTGTATTGAG+GGG | + | chr1_3:44299772-44299791 | Msa0119870:three_prime_UTR | 35.0% | |
| TAGTAGACATACTAAGCTTG+TGG | + | chr1_3:44299930-44299949 | Msa0119870:three_prime_UTR | 35.0% | |
| ACTATGCCACACTTCAAATA+TGG | - | chr1_3:44300077-44300096 | None:intergenic | 35.0% | |
| ! | ATATTTGAAGTGTGGCATAG+TGG | + | chr1_3:44300076-44300095 | Msa0119870:three_prime_UTR | 35.0% |
| ! | TATTTGAAGTGTGGCATAGT+GGG | + | chr1_3:44300077-44300096 | Msa0119870:three_prime_UTR | 35.0% |
| AGAAAAAACGGGAGTAGTTT+GGG | - | chr1_3:44300274-44300293 | None:intergenic | 35.0% | |
| !!! | CTGTCATTTTGCTCTATCTT+TGG | + | chr1_3:44300292-44300311 | Msa0119870:three_prime_UTR | 35.0% |
| TTGTTTCGGATAGATGTGGA+GGG | - | chr1_3:44294513-44294532 | None:intergenic | 40.0% | |
| TTTGTTTCGGATAGATGTGG+AGG | - | chr1_3:44294514-44294533 | None:intergenic | 40.0% | |
| !! | GAAGGGAGGGAATTTTGTTT+CGG | - | chr1_3:44294527-44294546 | None:intergenic | 40.0% |
| AGAAGAAAATGAGGAAGGGA+GGG | - | chr1_3:44294552-44294571 | None:intergenic | 40.0% | |
| !!! | GGTTTTAGAGAGAGAAAGTG+GGG | - | chr1_3:44294600-44294619 | None:intergenic | 40.0% |
| !!! | GGGTTTTAGAGAGAGAAAGT+GGG | - | chr1_3:44294601-44294620 | None:intergenic | 40.0% |
| !!! | AGGGTTTTAGAGAGAGAAAG+TGG | - | chr1_3:44294602-44294621 | None:intergenic | 40.0% |
| AATGATCGGAGAGAAATTGG+GGG | - | chr1_3:44294631-44294650 | None:intergenic | 40.0% | |
| AACGGCTTCATTGACATGAT+CGG | - | chr1_3:44294858-44294877 | None:intergenic | 40.0% | |
| AGCCGTTATTGTTAGATCTC+CGG | + | chr1_3:44294871-44294890 | Msa0119870:CDS | 40.0% | |
| CACCGGAGATCTAACAATAA+CGG | - | chr1_3:44294876-44294895 | None:intergenic | 40.0% | |
| GACTAAAACGAAGAACACAC+CGG | - | chr1_3:44294893-44294912 | None:intergenic | 40.0% | |
| CACTGGATCTGAATTCAACT+TGG | + | chr1_3:44295184-44295203 | Msa0119870:intron | 40.0% | |
| CGGATACGATTGTTGTACAT+TGG | + | chr1_3:44295295-44295314 | Msa0119870:intron | 40.0% | |
| CGAGTGTGTGTTTGTTTGAT+AGG | + | chr1_3:44295376-44295395 | Msa0119870:intron | 40.0% | |
| !!! | AGCACTGACACTTTTACCAA+AGG | + | chr1_3:44295431-44295450 | Msa0119870:intron | 40.0% |
| CACCAAGTATCTATGAAGCA+CGG | - | chr1_3:44295562-44295581 | None:intergenic | 40.0% | |
| !! | ATGAACATGTTGGTGGTGTA+AGG | + | chr1_3:44295941-44295960 | Msa0119870:intron | 40.0% |
| AAGGTCATAAAGCGGAAGAA+TGG | + | chr1_3:44295960-44295979 | Msa0119870:intron | 40.0% | |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | chr1_3:44296055-44296074 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | chr1_3:44296056-44296075 | None:intergenic | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | chr1_3:44296057-44296076 | None:intergenic | 40.0% |
| AACTCCTTTGTCTGCAAAAG+GGG | + | chr1_3:44296061-44296080 | Msa0119870:CDS | 40.0% | |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | chr1_3:44296111-44296130 | None:intergenic | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | chr1_3:44296140-44296159 | None:intergenic | 40.0% |
| TGTCGTTATGACAGTTCCTT+AGG | + | chr1_3:44296290-44296309 | Msa0119870:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | chr1_3:44296491-44296510 | Msa0119870:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | chr1_3:44296594-44296613 | Msa0119870:intron | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | chr1_3:44296830-44296849 | None:intergenic | 40.0% | |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | chr1_3:44297162-44297181 | Msa0119870:intron | 40.0% |
| CTCAAACTTTCTCTCTCCTA+TGG | - | chr1_3:44297181-44297200 | None:intergenic | 40.0% | |
| TGAGCTAGTGGTGGTTATTA+AGG | - | chr1_3:44297238-44297257 | None:intergenic | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | chr1_3:44297424-44297443 | Msa0119870:intron | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | chr1_3:44297476-44297495 | None:intergenic | 40.0% | |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | chr1_3:44297713-44297732 | None:intergenic | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | chr1_3:44297710-44297729 | Msa0119870:intron | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | chr1_3:44297916-44297935 | Msa0119870:intron | 40.0% |
| GAATTATGTTGTCAGCCTTG+TGG | + | chr1_3:44298035-44298054 | Msa0119870:intron | 40.0% | |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | chr1_3:44298053-44298072 | None:intergenic | 40.0% |
| TATCTTCCTCGGTCACAAAA+AGG | - | chr1_3:44298428-44298447 | None:intergenic | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | chr1_3:44298431-44298450 | Msa0119870:CDS | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | chr1_3:44298432-44298451 | Msa0119870:CDS | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | chr1_3:44298439-44298458 | None:intergenic | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | chr1_3:44298470-44298489 | None:intergenic | 40.0% | |
| CTCCTTTCATGCTGTTATTG+AGG | + | chr1_3:44298536-44298555 | Msa0119870:intron | 40.0% | |
| AAACTTACTTCCTCAGGATC+AGG | - | chr1_3:44298653-44298672 | None:intergenic | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | chr1_3:44298653-44298672 | Msa0119870:intron | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | chr1_3:44298659-44298678 | None:intergenic | 40.0% | |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | chr1_3:44299062-44299081 | Msa0119870:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | chr1_3:44299063-44299082 | Msa0119870:CDS | 40.0% |
| TGAGCAACAAGTGACAGAAA+TGG | + | chr1_3:44299091-44299110 | Msa0119870:CDS | 40.0% | |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | chr1_3:44299187-44299206 | Msa0119870:CDS | 40.0% |
| ! | AAGTATATCACAGCCTTGTG+AGG | + | chr1_3:44299244-44299263 | Msa0119870:intron | 40.0% |
| ! | AGTATATCACAGCCTTGTGA+GGG | + | chr1_3:44299245-44299264 | Msa0119870:intron | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | chr1_3:44299277-44299296 | Msa0119870:intron | 40.0% |
| TAGCTGTTATGCAGGAGTTA+AGG | - | chr1_3:44299581-44299600 | None:intergenic | 40.0% | |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | chr1_3:44299594-44299613 | Msa0119870:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | chr1_3:44299599-44299618 | Msa0119870:CDS | 40.0% |
| GGTTATCATCCTCTGTATTG+AGG | + | chr1_3:44299770-44299789 | Msa0119870:three_prime_UTR | 40.0% | |
| !! | AGTAAATCACCGACTCTCTT+AGG | + | chr1_3:44299894-44299913 | Msa0119870:three_prime_UTR | 40.0% |
| TCGTTTATGCCTAAGAGAGT+CGG | - | chr1_3:44299906-44299925 | None:intergenic | 40.0% | |
| TTGCTACTGCATGAAATGCA+AGG | + | chr1_3:44300006-44300025 | Msa0119870:three_prime_UTR | 40.0% | |
| TACTGCATGAAATGCAAGGT+AGG | + | chr1_3:44300010-44300029 | Msa0119870:three_prime_UTR | 40.0% | |
| CGACGATCAGTATTTGTATC+TGG | + | chr1_3:44300039-44300058 | Msa0119870:three_prime_UTR | 40.0% | |
| ! | GCAGCTTCTCCTTTTCAAAA+AGG | - | chr1_3:44300114-44300133 | None:intergenic | 40.0% |
| CAGAAAAAACGGGAGTAGTT+TGG | - | chr1_3:44300275-44300294 | None:intergenic | 40.0% | |
| !! | GATAGTTTCGAAAGCATCTG+AGG | + | chr1_3:44300355-44300374 | Msa0119870:three_prime_UTR | 40.0% |
| !! | TTTCGAAAGCATCTGAGGAT+GGG | + | chr1_3:44300360-44300379 | Msa0119870:three_prime_UTR | 40.0% |
| AGCATATCTAAGTGGGAACA+AGG | + | chr1_3:44300404-44300423 | Msa0119870:three_prime_UTR | 40.0% | |
| GAGAAGAAAATGAGGAAGGG+AGG | - | chr1_3:44294553-44294572 | None:intergenic | 45.0% | |
| GAGAAATTGGGGGAGAAGTA+GGG | - | chr1_3:44294621-44294640 | None:intergenic | 45.0% | |
| AGAGAAATTGGGGGAGAAGT+AGG | - | chr1_3:44294622-44294641 | None:intergenic | 45.0% | |
| AATCGGAGTGGAAACGGAAA+TGG | - | chr1_3:44294656-44294675 | None:intergenic | 45.0% | |
| TTACGGTTACGGTGGAGAAT+CGG | - | chr1_3:44294673-44294692 | None:intergenic | 45.0% | |
| GTTACCGGACATTACGGTTA+CGG | - | chr1_3:44294684-44294703 | None:intergenic | 45.0% | |
| TACTCATCAGTCGGTGCAAA+CGG | - | chr1_3:44294800-44294819 | None:intergenic | 45.0% | |
| !! | CTTTCGCTGCTGTTGATTCT+AGG | + | chr1_3:44294825-44294844 | Msa0119870:CDS | 45.0% |
| !! | ACTTTTACCAAAGGCGTGTC+TGG | + | chr1_3:44295440-44295459 | Msa0119870:intron | 45.0% |
| GTATCTATGAAGCACGGACA+CGG | - | chr1_3:44295556-44295575 | None:intergenic | 45.0% | |
| GTCCGTGCTTCATAGATACT+TGG | + | chr1_3:44295557-44295576 | Msa0119870:intron | 45.0% | |
| GGTGGTGTAAGGTCATAAAG+CGG | + | chr1_3:44295952-44295971 | Msa0119870:intron | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | chr1_3:44296008-44296027 | Msa0119870:CDS | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | chr1_3:44296062-44296081 | Msa0119870:CDS | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | chr1_3:44296067-44296086 | Msa0119870:CDS | 45.0% | |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | chr1_3:44296095-44296114 | Msa0119870:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | chr1_3:44296131-44296150 | None:intergenic | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | chr1_3:44296134-44296153 | None:intergenic | 45.0% |
| CCAACACCTATCTCAAATGC+TGG | + | chr1_3:44296131-44296150 | Msa0119870:CDS | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | chr1_3:44296221-44296240 | None:intergenic | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | chr1_3:44296809-44296828 | Msa0119870:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | chr1_3:44296817-44296836 | Msa0119870:CDS | 45.0% |
| TCTTGAGACCTATTGACACC+TGG | + | chr1_3:44296885-44296904 | Msa0119870:intron | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | chr1_3:44296985-44297004 | Msa0119870:intron | 45.0% | |
| ! | TCAAGGCTTTTCCGTCTCAA+TGG | + | chr1_3:44297265-44297284 | Msa0119870:intron | 45.0% |
| ! | CAAGGCTTTTCCGTCTCAAT+GGG | + | chr1_3:44297266-44297285 | Msa0119870:intron | 45.0% |
| ! | AAGGCTTTTCCGTCTCAATG+GGG | + | chr1_3:44297267-44297286 | Msa0119870:intron | 45.0% |
| ! | TCTAGAACTCCCCATTGAGA+CGG | - | chr1_3:44297279-44297298 | None:intergenic | 45.0% |
| TACATTACCTCCTCAAGCTC+AGG | + | chr1_3:44297357-44297376 | Msa0119870:intron | 45.0% | |
| ACATTACCTCCTCAAGCTCA+GGG | + | chr1_3:44297358-44297377 | Msa0119870:intron | 45.0% | |
| TCTGCGGCATGCATTTGTAT+TGG | - | chr1_3:44297509-44297528 | None:intergenic | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | chr1_3:44297535-44297554 | Msa0119870:intron | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | chr1_3:44297562-44297581 | None:intergenic | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | chr1_3:44297572-44297591 | Msa0119870:intron | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | chr1_3:44297573-44297592 | Msa0119870:intron | 45.0% | |
| AGCAGAAGCCCATATGTTAG+AGG | + | chr1_3:44297616-44297635 | Msa0119870:intron | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | chr1_3:44297693-44297712 | Msa0119870:intron | 45.0% | |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | chr1_3:44297700-44297719 | None:intergenic | 45.0% |
| GCATGGGGATTATGTGAGAT+GGG | - | chr1_3:44297736-44297755 | None:intergenic | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | chr1_3:44297737-44297756 | None:intergenic | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | chr1_3:44297752-44297771 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | chr1_3:44297760-44297779 | None:intergenic | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | chr1_3:44297757-44297776 | Msa0119870:intron | 45.0% | |
| !! | TTAATTGGCTGTTGGCCTTG+TGG | + | chr1_3:44298089-44298108 | Msa0119870:intron | 45.0% |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | chr1_3:44298106-44298125 | Msa0119870:intron | 45.0% |
| GGAAGTTGACAACCTTTCTC+TGG | + | chr1_3:44298127-44298146 | Msa0119870:CDS | 45.0% | |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | chr1_3:44298419-44298438 | Msa0119870:intron | 45.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | chr1_3:44298462-44298481 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | chr1_3:44298611-44298630 | Msa0119870:CDS | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | chr1_3:44299057-44299076 | None:intergenic | 45.0% | |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | chr1_3:44299188-44299207 | Msa0119870:CDS | 45.0% |
| AATCCCCAGTATGAAGTGGA+GGG | - | chr1_3:44299275-44299294 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | chr1_3:44299276-44299295 | None:intergenic | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | chr1_3:44299279-44299298 | None:intergenic | 45.0% | |
| ! | CCACTTCATACTGGGGATTT+TGG | + | chr1_3:44299276-44299295 | Msa0119870:intron | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | chr1_3:44299636-44299655 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | chr1_3:44299634-44299653 | Msa0119870:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | chr1_3:44299693-44299712 | None:intergenic | 45.0% |
| !! | AGCTAGCCTTGTGAATGTTG+AGG | + | chr1_3:44299820-44299839 | Msa0119870:three_prime_UTR | 45.0% |
| CAGCATCCTCAACATTCACA+AGG | - | chr1_3:44299829-44299848 | None:intergenic | 45.0% | |
| TGAATGTTGAGGATGCTGTG+AGG | + | chr1_3:44299831-44299850 | Msa0119870:three_prime_UTR | 45.0% | |
| CTGACCCCAAACAACTTCAA+GGG | + | chr1_3:44300144-44300163 | Msa0119870:three_prime_UTR | 45.0% | |
| TGCACCCTTGAAGTTGTTTG+GGG | - | chr1_3:44300151-44300170 | None:intergenic | 45.0% | |
| GTGCACCCTTGAAGTTGTTT+GGG | - | chr1_3:44300152-44300171 | None:intergenic | 45.0% | |
| AGTGCACCCTTGAAGTTGTT+TGG | - | chr1_3:44300153-44300172 | None:intergenic | 45.0% | |
| ! | AAACAACTTCAAGGGTGCAC+TGG | + | chr1_3:44300152-44300171 | Msa0119870:three_prime_UTR | 45.0% |
| AGGGTGCACTGGATATTGTT+AGG | + | chr1_3:44300163-44300182 | Msa0119870:three_prime_UTR | 45.0% | |
| GCACTGGATATTGTTAGGAC+AGG | + | chr1_3:44300168-44300187 | Msa0119870:three_prime_UTR | 45.0% | |
| TGTGTAAGCCTTCGTGCAAT+AGG | - | chr1_3:44300322-44300341 | None:intergenic | 45.0% | |
| !! | GTTTCGAAAGCATCTGAGGA+TGG | + | chr1_3:44300359-44300378 | Msa0119870:three_prime_UTR | 45.0% |
| !!! | TTTTTTATTTTTATTTTTTG+TGG | + | chr1_3:44295022-44295041 | Msa0119870:intron | 5.0% |
| ATGAGGAAGGGAGGGAAGAA+GGG | - | chr1_3:44294544-44294563 | None:intergenic | 50.0% | |
| AATGAGGAAGGGAGGGAAGA+AGG | - | chr1_3:44294545-44294564 | None:intergenic | 50.0% | |
| GTGGAGAATCGGAGTGGAAA+CGG | - | chr1_3:44294662-44294681 | None:intergenic | 50.0% | |
| TCCACCGTAACCGTAATGTC+CGG | + | chr1_3:44294677-44294696 | Msa0119870:exon | 50.0% | |
| TCCAGCGTTACCGGACATTA+CGG | - | chr1_3:44294690-44294709 | None:intergenic | 50.0% | |
| AACGCCAGATGACGCTTCAA+CGG | - | chr1_3:44294761-44294780 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | chr1_3:44296068-44296087 | None:intergenic | 50.0% |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | chr1_3:44296066-44296085 | Msa0119870:CDS | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | chr1_3:44296082-44296101 | Msa0119870:CDS | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | chr1_3:44296281-44296300 | None:intergenic | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | chr1_3:44296788-44296807 | Msa0119870:intron | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | chr1_3:44296796-44296815 | None:intergenic | 50.0% | |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | chr1_3:44296821-44296840 | Msa0119870:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | chr1_3:44296996-44297015 | Msa0119870:intron | 50.0% |
| TAACCACCACTAGCTCACTG+TGG | + | chr1_3:44297241-44297260 | Msa0119870:intron | 50.0% | |
| TGCATGCCGCAGAAGTAGAA+CGG | + | chr1_3:44297516-44297535 | Msa0119870:intron | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | chr1_3:44297525-44297544 | None:intergenic | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | chr1_3:44297582-44297601 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | chr1_3:44297580-44297599 | Msa0119870:intron | 50.0% | |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | chr1_3:44297692-44297711 | None:intergenic | 50.0% |
| CTAACCCGAAGATCAGTACC+AGG | + | chr1_3:44297692-44297711 | Msa0119870:intron | 50.0% | |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | chr1_3:44297699-44297718 | None:intergenic | 50.0% |
| AATCCCCATGCTCCAACATG+AGG | + | chr1_3:44297745-44297764 | Msa0119870:intron | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | chr1_3:44297746-44297765 | Msa0119870:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | chr1_3:44297751-44297770 | None:intergenic | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | chr1_3:44297753-44297772 | None:intergenic | 50.0% | |
| GACTGCAAGACAAAGCCACA+AGG | - | chr1_3:44298107-44298126 | None:intergenic | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | chr1_3:44298142-44298161 | None:intergenic | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | chr1_3:44298344-44298363 | Msa0119870:intron | 50.0% | |
| AACTCACCTGGAAGCAAGGT+AGG | - | chr1_3:44298458-44298477 | None:intergenic | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | chr1_3:44298629-44298648 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | chr1_3:44298639-44298658 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | chr1_3:44298642-44298661 | None:intergenic | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | chr1_3:44298640-44298659 | Msa0119870:CDS | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | chr1_3:44298751-44298770 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | chr1_3:44298765-44298784 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | chr1_3:44299055-44299074 | None:intergenic | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | chr1_3:44299056-44299075 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | chr1_3:44299068-44299087 | None:intergenic | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | chr1_3:44299110-44299129 | Msa0119870:CDS | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | chr1_3:44299115-44299134 | Msa0119870:CDS | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | chr1_3:44299119-44299138 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | chr1_3:44299149-44299168 | None:intergenic | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | chr1_3:44299268-44299287 | Msa0119870:intron | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | chr1_3:44299274-44299293 | None:intergenic | 50.0% | |
| GTAGCTTCCCCTCAATACAG+AGG | - | chr1_3:44299782-44299801 | None:intergenic | 50.0% | |
| GCTGACCCCAAACAACTTCA+AGG | + | chr1_3:44300143-44300162 | Msa0119870:three_prime_UTR | 50.0% | |
| TTGGGATGCCTATTGCACGA+AGG | + | chr1_3:44300311-44300330 | Msa0119870:three_prime_UTR | 50.0% | |
| GTTACGGTGGAGAATCGGAG+TGG | - | chr1_3:44294668-44294687 | None:intergenic | 55.0% | |
| ACCGGACATTACGGTTACGG+TGG | - | chr1_3:44294681-44294700 | None:intergenic | 55.0% | |
| ACCGTAATGTCCGGTAACGC+TGG | + | chr1_3:44294686-44294705 | Msa0119870:exon | 55.0% | |
| TCATCAGTCGGTGCAAACGG+TGG | - | chr1_3:44294797-44294816 | None:intergenic | 55.0% | |
| CCAAACACCAGACACGCCTT+TGG | - | chr1_3:44295450-44295469 | None:intergenic | 55.0% | |
| ! | CCAAAGGCGTGTCTGGTGTT+TGG | + | chr1_3:44295447-44295466 | Msa0119870:intron | 55.0% |
| GGGGAAGGGCAAACAAGTCA+AGG | + | chr1_3:44296081-44296100 | Msa0119870:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | chr1_3:44296452-44296471 | None:intergenic | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | chr1_3:44296449-44296468 | Msa0119870:CDS | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | chr1_3:44296453-44296472 | Msa0119870:CDS | 55.0% | |
| CTTGAGCCACAGTGAGCTAG+TGG | - | chr1_3:44297250-44297269 | None:intergenic | 55.0% | |
| CACTAGCTCACTGTGGCTCA+AGG | + | chr1_3:44297248-44297267 | Msa0119870:intron | 55.0% | |
| TTACCTCCTCAAGCTCAGGG+TGG | + | chr1_3:44297361-44297380 | Msa0119870:intron | 55.0% | |
| TTGAGGCATAGGCAGTACCC+TGG | + | chr1_3:44297384-44297403 | Msa0119870:intron | 55.0% | |
| TGAGGCATAGGCAGTACCCT+GGG | + | chr1_3:44297385-44297404 | Msa0119870:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | chr1_3:44298449-44298468 | Msa0119870:CDS | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | chr1_3:44298759-44298778 | Msa0119870:intron | 55.0% | |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | chr1_3:44299054-44299073 | None:intergenic | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | chr1_3:44299267-44299286 | Msa0119870:intron | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | chr1_3:44299269-44299288 | Msa0119870:intron | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | chr1_3:44299273-44299292 | None:intergenic | 55.0% | |
| !! | ACTGCGGTGTTGCGTAGTCA+GGG | + | chr1_3:44300445-44300464 | Msa0119870:three_prime_UTR | 55.0% |
| GGAAGGGAGGGAAGAAGGGA+GGG | - | chr1_3:44294540-44294559 | None:intergenic | 60.0% | |
| AGGAAGGGAGGGAAGAAGGG+AGG | - | chr1_3:44294541-44294560 | None:intergenic | 60.0% | |
| GTCGGAAGGTCCAGCGTTAC+CGG | - | chr1_3:44294699-44294718 | None:intergenic | 60.0% | |
| ATCTGTGCTCCGGTCGGCAT+CGG | - | chr1_3:44294731-44294750 | None:intergenic | 60.0% | |
| TGCCGACCGGAGCACAGATT+CGG | + | chr1_3:44294732-44294751 | Msa0119870:CDS | 60.0% | |
| GCCAGATGACGCTTCAACGG+CGG | - | chr1_3:44294758-44294777 | None:intergenic | 60.0% | |
| AGTCGGTGCAAACGGTGGCT+TGG | - | chr1_3:44294792-44294811 | None:intergenic | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | chr1_3:44296264-44296283 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | chr1_3:44296265-44296284 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | chr1_3:44296272-44296291 | None:intergenic | 60.0% | |
| GAGCCACAGTGAGCTAGTGG+TGG | - | chr1_3:44297247-44297266 | None:intergenic | 60.0% | |
| CAACCACCCTGAGCTTGAGG+AGG | - | chr1_3:44297367-44297386 | None:intergenic | 60.0% | |
| CCTCAACCACCCTGAGCTTG+AGG | - | chr1_3:44297370-44297389 | None:intergenic | 60.0% | |
| CCTCAAGCTCAGGGTGGTTG+AGG | + | chr1_3:44297367-44297386 | Msa0119870:intron | 60.0% | |
| GCTCAGGGTGGTTGAGGCAT+AGG | + | chr1_3:44297373-44297392 | Msa0119870:intron | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | chr1_3:44298622-44298641 | Msa0119870:CDS | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | chr1_3:44299053-44299072 | None:intergenic | 60.0% | |
| GAGGCCACAAACTCCATCGC+CGG | + | chr1_3:44299653-44299672 | Msa0119870:CDS | 60.0% | |
| AGGCCACAAACTCCATCGCC+GGG | + | chr1_3:44299654-44299673 | Msa0119870:CDS | 60.0% | |
| AGTCCCGGCGATGGAGTTTG+TGG | - | chr1_3:44299660-44299679 | None:intergenic | 60.0% | |
| AACTCCATCGCCGGGACTTG+CGG | + | chr1_3:44299662-44299681 | Msa0119870:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+CGG | - | chr1_3:44299675-44299694 | None:intergenic | 60.0% | |
| !! | CACTGCGGTGTTGCGTAGTC+AGG | + | chr1_3:44300444-44300463 | Msa0119870:three_prime_UTR | 60.0% |
| AACGCTGGACCTTCCGACCG+TGG | + | chr1_3:44294701-44294720 | Msa0119870:CDS | 65.0% | |
| GGCCGAATCTGTGCTCCGGT+CGG | - | chr1_3:44294737-44294756 | None:intergenic | 65.0% | |
| ! | GCCGCCGTTGAAGCGTCATC+TGG | + | chr1_3:44294754-44294773 | Msa0119870:CDS | 65.0% |
| GGACACGGTCACGTCCACAC+CGG | - | chr1_3:44295541-44295560 | None:intergenic | 65.0% | |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | chr1_3:44296266-44296285 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | chr1_3:44296263-44296282 | Msa0119870:CDS | 65.0% | |
| GTGGAGGGGGAACCCTCACA+AGG | - | chr1_3:44299260-44299279 | None:intergenic | 65.0% | |
| ATCGGCGAGCCACGGTCGGA+AGG | - | chr1_3:44294713-44294732 | None:intergenic | 70.0% | |
| CGGCGGCCGAATCTGTGCTC+CGG | - | chr1_3:44294741-44294760 | None:intergenic | 70.0% | |
| GCTTCCGCAAGTCCCGGCGA+TGG | - | chr1_3:44299669-44299688 | None:intergenic | 70.0% | |
| !! | CGGCATCGGCGAGCCACGGT+CGG | - | chr1_3:44294717-44294736 | None:intergenic | 75.0% |
| !! | CGGTCGGCATCGGCGAGCCA+CGG | - | chr1_3:44294721-44294740 | None:intergenic | 75.0% |
| CGTGGCTCGCCGATGCCGAC+CGG | + | chr1_3:44294719-44294738 | Msa0119870:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44294492 | 44300483 | 44294492 | ID=Msa0119870;Name=Msa0119870 |
| chr1_3 | mRNA | 44294492 | 44300483 | 44294492 | ID=Msa0119870-mRNA-1;Parent=Msa0119870;Name=Msa0119870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=200|0.92|0.92|1|1|1|14|761|465 |
| chr1_3 | exon | 44294492 | 44294892 | 44294492 | ID=Msa0119870-mRNA-1:exon:13227;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44295963 | 44296152 | 44295963 | ID=Msa0119870-mRNA-1:exon:13228;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44296258 | 44296311 | 44296258 | ID=Msa0119870-mRNA-1:exon:13229;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44296427 | 44296512 | 44296427 | ID=Msa0119870-mRNA-1:exon:13230;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44296602 | 44296690 | 44296602 | ID=Msa0119870-mRNA-1:exon:13231;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44296808 | 44296862 | 44296808 | ID=Msa0119870-mRNA-1:exon:13232;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44298125 | 44298177 | 44298125 | ID=Msa0119870-mRNA-1:exon:13233;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44298261 | 44298311 | 44298261 | ID=Msa0119870-mRNA-1:exon:13234;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44298422 | 44298470 | 44298422 | ID=Msa0119870-mRNA-1:exon:13235;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44298596 | 44298664 | 44298596 | ID=Msa0119870-mRNA-1:exon:13236;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44298761 | 44298837 | 44298761 | ID=Msa0119870-mRNA-1:exon:13237;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44299010 | 44299241 | 44299010 | ID=Msa0119870-mRNA-1:exon:13238;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44299423 | 44299489 | 44299423 | ID=Msa0119870-mRNA-1:exon:13239;Parent=Msa0119870-mRNA-1 |
| chr1_3 | exon | 44299598 | 44300483 | 44299598 | ID=Msa0119870-mRNA-1:exon:13240;Parent=Msa0119870-mRNA-1 |
| chr1_3 | five_prime_UTR | 44294492 | 44294691 | 44294492 | ID=Msa0119870-mRNA-1:five_prime_utr;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44294692 | 44294892 | 44294692 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44295963 | 44296152 | 44295963 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44296258 | 44296311 | 44296258 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44296427 | 44296512 | 44296427 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44296602 | 44296690 | 44296602 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44296808 | 44296862 | 44296808 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44298125 | 44298177 | 44298125 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44298261 | 44298311 | 44298261 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44298422 | 44298470 | 44298422 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44298596 | 44298664 | 44298596 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44298761 | 44298837 | 44298761 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44299010 | 44299241 | 44299010 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44299423 | 44299489 | 44299423 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | CDS | 44299598 | 44299722 | 44299598 | ID=Msa0119870-mRNA-1:cds;Parent=Msa0119870-mRNA-1 |
| chr1_3 | three_prime_UTR | 44299723 | 44300483 | 44299723 | ID=Msa0119870-mRNA-1:three_prime_utr;Parent=Msa0119870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
