Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024370 | sp|P39144|LP14_BACIU | 32.240 | 183 | 107 | 6 | 57 | 239 | 18 | 183 | 8.93e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024370 | Msa0120230 | 0.934583 | 3.227704e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024370 | MtrunA17_Chr8g0385361 | 95.152 | 330 | 15 | 1 | 1 | 329 | 1 | 330 | 0.0 | 648 |
| Msa0024370 | MtrunA17_Chr1g0178461 | 97.551 | 245 | 6 | 0 | 1 | 245 | 1 | 245 | 4.23e-180 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024370 | AT3G11470.1 | 58.020 | 293 | 115 | 2 | 20 | 312 | 11 | 295 | 2.14e-118 | 343 |
| Msa0024370 | AT3G11470.4 | 57.664 | 274 | 109 | 2 | 20 | 293 | 11 | 277 | 1.71e-108 | 318 |
| Msa0024370 | AT3G11470.8 | 60.251 | 239 | 87 | 2 | 74 | 312 | 1 | 231 | 4.39e-98 | 290 |
| Msa0024370 | AT3G11470.6 | 63.721 | 215 | 78 | 0 | 20 | 234 | 11 | 225 | 8.23e-98 | 289 |
| Msa0024370 | AT3G11470.5 | 63.721 | 215 | 78 | 0 | 20 | 234 | 11 | 225 | 8.23e-98 | 289 |
| Msa0024370 | AT3G11470.2 | 62.791 | 215 | 80 | 0 | 20 | 234 | 11 | 225 | 4.02e-95 | 282 |
| Msa0024370 | AT2G02765.3 | 61.611 | 211 | 81 | 0 | 28 | 238 | 14 | 224 | 2.46e-93 | 278 |
| Msa0024370 | AT2G02765.1 | 61.611 | 211 | 81 | 0 | 28 | 238 | 14 | 224 | 2.46e-93 | 278 |
| Msa0024370 | AT3G11470.9 | 57.604 | 217 | 84 | 2 | 96 | 312 | 2 | 210 | 5.89e-83 | 250 |
| Msa0024370 | AT3G11470.3 | 57.209 | 215 | 84 | 2 | 98 | 312 | 20 | 226 | 4.86e-81 | 246 |
| Msa0024370 | AT2G02765.2 | 53.081 | 211 | 78 | 1 | 28 | 238 | 14 | 203 | 7.72e-75 | 229 |
| Msa0024370 | AT2G02765.4 | 64.242 | 165 | 59 | 0 | 74 | 238 | 1 | 165 | 5.82e-74 | 226 |
| Msa0024370 | AT3G11470.7 | 56.633 | 196 | 78 | 2 | 98 | 293 | 20 | 208 | 2.83e-71 | 220 |
Find 121 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTAAACTTCAAGGATTT+TGG | 0.087791 | 1_1:-46814647 | None:intergenic |
| GTTGAAGATGAATGTATTTC+CGG | 0.209271 | 1_1:+46816534 | Msa0024370:CDS |
| ACAACCACTGCAGAGGTAAA+TGG | 0.283864 | 1_1:-46816756 | None:intergenic |
| GTCAGGAGTTTATTAAATTA+TGG | 0.287747 | 1_1:+46815196 | Msa0024370:CDS |
| TTCCGTATAATCAGATTTAC+TGG | 0.289106 | 1_1:-46816498 | None:intergenic |
| CGAATAGTGAAAGTATTAAA+AGG | 0.291999 | 1_1:-46815828 | None:intergenic |
| ATCCAAAATCCTTGAAGTTT+AGG | 0.294051 | 1_1:+46814645 | Msa0024370:CDS |
| TGGATTATTACATTACAAAT+TGG | 0.315129 | 1_1:-46816797 | None:intergenic |
| TTAGTGATTCCATAATAAAA+TGG | 0.322493 | 1_1:+46816609 | Msa0024370:three_prime_UTR |
| AAGTTTAGGAAGAACGATTA+TGG | 0.333307 | 1_1:+46814659 | Msa0024370:CDS |
| TCCACCCCATGTGATTTCTA+AGG | 0.335718 | 1_1:+46815884 | Msa0024370:CDS |
| AATACCAGCCAAGCATTATA+AGG | 0.338652 | 1_1:-46812203 | None:intergenic |
| ATCGTTCTTCCTAAACTTCA+AGG | 0.339814 | 1_1:-46814654 | None:intergenic |
| TTCCAGTAAATCTGATTATA+CGG | 0.348190 | 1_1:+46816496 | Msa0024370:CDS |
| TTTCAAAATATCGATTCAAT+AGG | 0.351288 | 1_1:-46812993 | None:intergenic |
| ACTTTGTGCTAGGTATGATT+TGG | 0.354426 | 1_1:+46812718 | Msa0024370:intron |
| GATCAATTTGACAATTTGTC+TGG | 0.364981 | 1_1:-46814625 | None:intergenic |
| CAACCACTGCAGAGGTAAAT+GGG | 0.372458 | 1_1:-46816755 | None:intergenic |
| GAAATTACTGTTGAGCCTTC+TGG | 0.381624 | 1_1:+46816090 | Msa0024370:CDS |
| CAGACTCTGCGGAAGTCATT+GGG | 0.390770 | 1_1:+46816559 | Msa0024370:CDS |
| ACAGACTCTGCGGAAGTCAT+TGG | 0.399046 | 1_1:+46816558 | Msa0024370:CDS |
| ATACATTCATCTTCAACAAA+TGG | 0.426875 | 1_1:-46816528 | None:intergenic |
| ATGATGAACATATATTGCTT+TGG | 0.429596 | 1_1:+46812786 | Msa0024370:CDS |
| TACATTCATCTTCAACAAAT+GGG | 0.430317 | 1_1:-46816527 | None:intergenic |
| AGATCCTGAGCTTCGGCGTC+AGG | 0.430983 | 1_1:+46815179 | Msa0024370:CDS |
| AACTCCTGACGCCGAAGCTC+AGG | 0.433331 | 1_1:-46815183 | None:intergenic |
| GGAACGGTGGTCGACGGCGG+TGG | 0.434345 | 1_1:-46812112 | None:intergenic |
| ACGGTGGTCGACGGCGGTGG+AGG | 0.434519 | 1_1:-46812109 | None:intergenic |
| TGAAGAATCTCTCAAGCAAT+TGG | 0.437764 | 1_1:+46816118 | Msa0024370:CDS |
| GGCGGAGGAAGGGTCGCGTC+TGG | 0.441351 | 1_1:-46812259 | None:intergenic |
| GACTTCCGCAGAGTCTGTTC+CGG | 0.449410 | 1_1:-46816553 | None:intergenic |
| ATCACTGGCCTTATAATGCT+TGG | 0.456299 | 1_1:+46812195 | Msa0024370:five_prime_UTR |
| AAATCATTCAAATAATGTAA+TGG | 0.460701 | 1_1:-46816817 | None:intergenic |
| GCTGATATCTACTGAAACAT+TGG | 0.460811 | 1_1:+46816711 | Msa0024370:three_prime_UTR |
| GTGGAGGAAGGTGTCGGCAG+TGG | 0.465414 | 1_1:-46812093 | None:intergenic |
| GGAGGGACAACGGCGGAGGA+AGG | 0.465841 | 1_1:-46812270 | None:intergenic |
| TGCCGCCGTTTGCATAGAAA+AGG | 0.468357 | 1_1:+46816176 | Msa0024370:CDS |
| GAGGAAGGTGTCGGCAGTGG+CGG | 0.468493 | 1_1:-46812090 | None:intergenic |
| TGGTCGACGGCGGTGGAGGA+AGG | 0.475890 | 1_1:-46812105 | None:intergenic |
| ATCTTGCTTATACTAAGATT+AGG | 0.477928 | 1_1:+46816844 | Msa0024370:three_prime_UTR |
| CGCGTCTGGCGGAGTGTGAG+AGG | 0.478316 | 1_1:-46812245 | None:intergenic |
| GGAGGAAGGGTCGCGTCTGG+CGG | 0.479219 | 1_1:-46812256 | None:intergenic |
| AAAAGGCATGCTACCTGCAT+TGG | 0.484600 | 1_1:-46816205 | None:intergenic |
| CCTCTTCTCTTCTCCTCCTA+CGG | 0.485202 | 1_1:+46812034 | Msa0024370:five_prime_UTR |
| TGCTCTCTTAGCTCGTGCAT+TGG | 0.485502 | 1_1:+46813077 | Msa0024370:CDS |
| GAAAAGTTGATGGTGGGTGG+TGG | 0.487320 | 1_1:-46812066 | None:intergenic |
| CTGGCCTTATAATGCTTGGC+TGG | 0.490541 | 1_1:+46812199 | Msa0024370:five_prime_UTR |
| GAGGGACAACGGCGGAGGAA+GGG | 0.493623 | 1_1:-46812269 | None:intergenic |
| TGCAGAGGTAAATGGGGAAA+AGG | 0.504606 | 1_1:-46816748 | None:intergenic |
| TGAACATATATTGCTTTGGA+AGG | 0.510167 | 1_1:+46812790 | Msa0024370:CDS |
| GAAAATGTACTTCGCATGCG+TGG | 0.516352 | 1_1:+46813036 | Msa0024370:CDS |
| AATTGCTTGAGAGATTCTTC+AGG | 0.520812 | 1_1:-46816116 | None:intergenic |
| ACATTGTAGATCCTGAGCTT+CGG | 0.521064 | 1_1:+46815172 | Msa0024370:CDS |
| TGTGCTGGAAGTTGCACGGG+CGG | 0.521372 | 1_1:-46812840 | None:intergenic |
| AAATCACATGGGGTGGAACA+TGG | 0.522520 | 1_1:-46815878 | None:intergenic |
| CAGTGGCGGAGAAAAGTTGA+TGG | 0.523602 | 1_1:-46812076 | None:intergenic |
| TTCCCCATTTACCTCTGCAG+TGG | 0.524545 | 1_1:+46816752 | Msa0024370:three_prime_UTR |
| ATATGTAAAAGCACTGGGAA+GGG | 0.526973 | 1_1:+46815791 | Msa0024370:CDS |
| GGAGGCATATGTAAAAGCAC+TGG | 0.528688 | 1_1:+46815785 | Msa0024370:intron |
| GAAAAGGACAACACCAATGC+AGG | 0.529947 | 1_1:+46816192 | Msa0024370:CDS |
| GCGAGGAGGGACAACGGCGG+AGG | 0.530361 | 1_1:-46812274 | None:intergenic |
| ATGGTGGGTGGTGGATTATG+AGG | 0.530861 | 1_1:-46812057 | None:intergenic |
| TCGATCAGCGTGCGCGAGGA+GGG | 0.538148 | 1_1:-46812287 | None:intergenic |
| GTATGTGGTTTGTAGACAAA+GGG | 0.538221 | 1_1:+46816469 | Msa0024370:intron |
| ATGTGGAAGAGAAGCAAAGG+AGG | 0.542602 | 1_1:+46815082 | Msa0024370:CDS |
| GCAGTGGTTGTTGCACGTGC+AGG | 0.542629 | 1_1:+46816768 | Msa0024370:three_prime_UTR |
| TGGAGTAACTGTCGGCTCAC+CGG | 0.547375 | 1_1:+46814899 | Msa0024370:CDS |
| TATTAAAATGTAGTGGTGGT+AGG | 0.557186 | 1_1:-46814848 | None:intergenic |
| TATGTAAAAGCACTGGGAAG+GGG | 0.557410 | 1_1:+46815792 | Msa0024370:CDS |
| TATTAAATTATGGACTCTGA+AGG | 0.557965 | 1_1:+46815206 | Msa0024370:CDS |
| TTTGTACACTTTACCTCATG+AGG | 0.558073 | 1_1:-46812970 | None:intergenic |
| ACTTCTTCTTTGATAGCATG+TGG | 0.558310 | 1_1:+46814879 | Msa0024370:CDS |
| ACTGTCAATACGCTGACGAT+CGG | 0.558418 | 1_1:+46814823 | Msa0024370:CDS |
| AAAATGTACTTCGCATGCGT+GGG | 0.567044 | 1_1:+46813037 | Msa0024370:CDS |
| CATATGTAAAAGCACTGGGA+AGG | 0.568391 | 1_1:+46815790 | Msa0024370:CDS |
| ACCTTAGAAATCACATGGGG+TGG | 0.569622 | 1_1:-46815885 | None:intergenic |
| ATCGATCAGCGTGCGCGAGG+AGG | 0.580276 | 1_1:-46812288 | None:intergenic |
| TTGATGTGGAAGAGAAGCAA+AGG | 0.580503 | 1_1:+46815079 | Msa0024370:CDS |
| AGACTCTGCGGAAGTCATTG+GGG | 0.585090 | 1_1:+46816560 | Msa0024370:CDS |
| GGAGAAAAGTTGATGGTGGG+TGG | 0.587354 | 1_1:-46812069 | None:intergenic |
| CGTTGAACTCATGCGTACTC+AGG | 0.587561 | 1_1:-46812742 | None:intergenic |
| GTGGATTATGAGGCCGTAGG+AGG | 0.587669 | 1_1:-46812047 | None:intergenic |
| AGAAGAGGAACGGTGGTCGA+CGG | 0.588229 | 1_1:-46812118 | None:intergenic |
| CGATTAAGAGACCATGTGAA+AGG | 0.589724 | 1_1:+46815849 | Msa0024370:CDS |
| GCTAGCATTTCTACTTCATG+TGG | 0.592831 | 1_1:-46815147 | None:intergenic |
| AGTAGACTAAAGTTGATCAC+TGG | 0.593473 | 1_1:+46812180 | Msa0024370:five_prime_UTR |
| ATTGTAGATTGGAATTGATG+TGG | 0.593603 | 1_1:+46815065 | Msa0024370:intron |
| ACGGCGGTGGAGGAAGGTGT+CGG | 0.595301 | 1_1:-46812099 | None:intergenic |
| AGAAAAGTATCGACGAGCAA+AGG | 0.602228 | 1_1:-46815124 | None:intergenic |
| CCGTAGGAGGAGAAGAGAAG+AGG | 0.607015 | 1_1:-46812034 | None:intergenic |
| AACATACCTTAGAAATCACA+TGG | 0.608184 | 1_1:-46815890 | None:intergenic |
| ATAGCATGTGGAGTAACTGT+CGG | 0.608997 | 1_1:+46814891 | Msa0024370:CDS |
| GGGGAGAAAGAGAAGAGGAA+CGG | 0.611048 | 1_1:-46812128 | None:intergenic |
| GCGTCTGGCGGAGTGTGAGA+GGG | 0.611330 | 1_1:-46812244 | None:intergenic |
| TGTACTTCGCATGCGTGGGG+AGG | 0.613246 | 1_1:+46813041 | Msa0024370:CDS |
| GAAATCGATCAGCGTGCGCG+AGG | 0.617089 | 1_1:-46812291 | None:intergenic |
| GGCGGAGAAAAGTTGATGGT+GGG | 0.618329 | 1_1:-46812072 | None:intergenic |
| CGGCAAACAGCATGATGCGG+TGG | 0.618400 | 1_1:-46812820 | None:intergenic |
| GACTCTGCGGAAGTCATTGG+GGG | 0.625402 | 1_1:+46816561 | Msa0024370:CDS |
| GGGCGGCAAACAGCATGATG+CGG | 0.629120 | 1_1:-46812823 | None:intergenic |
| GCGTGCGCGAGGAGGGACAA+CGG | 0.634436 | 1_1:-46812280 | None:intergenic |
| TCGCAGGGGAGAAAGAGAAG+AGG | 0.635135 | 1_1:-46812133 | None:intergenic |
| GAGGCATATGTAAAAGCACT+GGG | 0.640279 | 1_1:+46815786 | Msa0024370:CDS |
| CATGGATACCTCCTTTCACA+TGG | 0.640768 | 1_1:-46815860 | None:intergenic |
| AGATTCTTCAGGTCACCAGA+AGG | 0.645560 | 1_1:-46816105 | None:intergenic |
| TGGCGGAGAAAAGTTGATGG+TGG | 0.648658 | 1_1:-46812073 | None:intergenic |
| GAGAAAGAGAAGAGGAACGG+TGG | 0.649065 | 1_1:-46812125 | None:intergenic |
| AGAGGAACGGTGGTCGACGG+CGG | 0.649736 | 1_1:-46812115 | None:intergenic |
| TTAAGAGACCATGTGAAAGG+AGG | 0.657411 | 1_1:+46815852 | Msa0024370:CDS |
| AAATGTACTTCGCATGCGTG+GGG | 0.658909 | 1_1:+46813038 | Msa0024370:CDS |
| ACGTGCAACAACCACTGCAG+AGG | 0.662040 | 1_1:-46816763 | None:intergenic |
| TGTGAGATATTAAAATGTAG+TGG | 0.663065 | 1_1:-46814855 | None:intergenic |
| AACCACTGCAGAGGTAAATG+GGG | 0.668732 | 1_1:-46816754 | None:intergenic |
| GTGGTGGATTATGAGGCCGT+AGG | 0.673803 | 1_1:-46812050 | None:intergenic |
| GAGATATTAAAATGTAGTGG+TGG | 0.687442 | 1_1:-46814852 | None:intergenic |
| TGCGCGAGGAGGGACAACGG+CGG | 0.691239 | 1_1:-46812277 | None:intergenic |
| ACATACCTTAGAAATCACAT+GGG | 0.706017 | 1_1:-46815889 | None:intergenic |
| TATATGTTCATCATTAACAG+CGG | 0.715467 | 1_1:-46812777 | None:intergenic |
| GAACGATTATGGCAAACCTG+AGG | 0.715846 | 1_1:+46814670 | Msa0024370:CDS |
| TATTTCCGGAACAGACTCTG+CGG | 0.745788 | 1_1:+46816548 | Msa0024370:CDS |
| CATACCTTAGAAATCACATG+GGG | 0.769679 | 1_1:-46815888 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAACAAAAAAAAAGA+GGG | + | chr1_1:46812157-46812176 | Msa0024370:five_prime_UTR | 10.0% |
| !!! | TATAAGTAATTTTATTGTTT+CGG | + | chr1_1:46812370-46812389 | Msa0024370:intron | 10.0% |
| !! | CATAAAAAACAAAAAAAAAG+AGG | + | chr1_1:46812156-46812175 | Msa0024370:five_prime_UTR | 15.0% |
| !!! | GAATAATTGTAAGTTAATTT+TGG | + | chr1_1:46812314-46812333 | Msa0024370:intron | 15.0% |
| !! | TGTTACTATATTATTTGAAA+TGG | + | chr1_1:46813181-46813200 | Msa0024370:intron | 15.0% |
| !! | CAAAAAATATTAGCAAAATT+TGG | - | chr1_1:46813864-46813883 | None:intergenic | 15.0% |
| !! | AATTATGTTAAAAGTTGTAA+AGG | - | chr1_1:46814450-46814469 | None:intergenic | 15.0% |
| !! | TAACAATATAAAATACATAC+CGG | - | chr1_1:46814921-46814940 | None:intergenic | 15.0% |
| !! | AAATCATTCAAATAATGTAA+TGG | - | chr1_1:46816820-46816839 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr1_1:46812573-46812592 | None:intergenic | 20.0% |
| !!! | ATTAAAATGTGCTTTTTATG+TGG | + | chr1_1:46812689-46812708 | Msa0024370:intron | 20.0% |
| !!! | TTTCAAAATATCGATTCAAT+AGG | - | chr1_1:46812996-46813015 | None:intergenic | 20.0% |
| !!! | TACTATATTATTTGAAATGG+AGG | + | chr1_1:46813184-46813203 | Msa0024370:intron | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | chr1_1:46813556-46813575 | Msa0024370:intron | 20.0% |
| !! | AAAATTATAAAGTCTATGAG+AGG | - | chr1_1:46814348-46814367 | None:intergenic | 20.0% |
| !!! | TCTCATAGACTTTATAATTT+TGG | + | chr1_1:46814347-46814366 | Msa0024370:intron | 20.0% |
| !!! | CTCATAGACTTTATAATTTT+GGG | + | chr1_1:46814348-46814367 | Msa0024370:intron | 20.0% |
| !! | TTTAAGTAGCATATTTGAAT+AGG | + | chr1_1:46814797-46814816 | Msa0024370:intron | 20.0% |
| !!! | AGAAAATTTGAGTGTTTTTT+TGG | + | chr1_1:46815364-46815383 | Msa0024370:intron | 20.0% |
| !! | AATTACAATTATCATAAAGC+AGG | - | chr1_1:46815670-46815689 | None:intergenic | 20.0% |
| !! | ATTGTAATTATAATGTGACT+AGG | + | chr1_1:46815681-46815700 | Msa0024370:intron | 20.0% |
| !! | TTGTAATTATAATGTGACTA+GGG | + | chr1_1:46815682-46815701 | Msa0024370:intron | 20.0% |
| !! | TTAGTGATTCCATAATAAAA+TGG | + | chr1_1:46816609-46816628 | Msa0024370:three_prime_UTR | 20.0% |
| !!! | TTGAAACTTCCATTTTATTA+TGG | - | chr1_1:46816621-46816640 | None:intergenic | 20.0% |
| !!! | ATCTAAGACAGTATAAAAAA+TGG | - | chr1_1:46816691-46816710 | None:intergenic | 20.0% |
| !! | TGGATTATTACATTACAAAT+TGG | - | chr1_1:46816800-46816819 | None:intergenic | 20.0% |
| !!! | AGGGTTAAATTTATGTTTTA+TGG | - | chr1_1:46816937-46816956 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTATGTCGCA+GGG | - | chr1_1:46812151-46812170 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTTTATGTCGC+AGG | - | chr1_1:46812152-46812171 | None:intergenic | 25.0% |
| ! | GCATTGTTCTTATTATATCA+TGG | + | chr1_1:46812471-46812490 | Msa0024370:intron | 25.0% |
| ! | TATATGTTCATCATTAACAG+CGG | - | chr1_1:46812780-46812799 | None:intergenic | 25.0% |
| ! | ATGATGAACATATATTGCTT+TGG | + | chr1_1:46812786-46812805 | Msa0024370:CDS | 25.0% |
| !! | GTTGTTGCTTGATATATATA+AGG | + | chr1_1:46812893-46812912 | Msa0024370:intron | 25.0% |
| ! | AGGTAAAACATACCAAAAAT+GGG | - | chr1_1:46812953-46812972 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr1_1:46813552-46813571 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTATTAGGA+AGG | + | chr1_1:46813560-46813579 | Msa0024370:intron | 25.0% |
| ! | AAATGAGTTAGAGAAAAACA+TGG | + | chr1_1:46813593-46813612 | Msa0024370:intron | 25.0% |
| ! | GACATTGATATAATAGTGTA+TGG | - | chr1_1:46813970-46813989 | None:intergenic | 25.0% |
| ! | AAACAACATCAACATGTTAT+GGG | - | chr1_1:46814387-46814406 | None:intergenic | 25.0% |
| ! | TGTTAAAAGTTGTAAAGGTA+AGG | - | chr1_1:46814445-46814464 | None:intergenic | 25.0% |
| ! | TGTGAGATATTAAAATGTAG+TGG | - | chr1_1:46814858-46814877 | None:intergenic | 25.0% |
| ! | GTCAGGAGTTTATTAAATTA+TGG | + | chr1_1:46815196-46815215 | Msa0024370:CDS | 25.0% |
| ! | TATTAAATTATGGACTCTGA+AGG | + | chr1_1:46815206-46815225 | Msa0024370:CDS | 25.0% |
| !! | TTGATTTTTACTACTCAGTT+AGG | + | chr1_1:46815264-46815283 | Msa0024370:intron | 25.0% |
| ! | TGTGATATAAAACTTCTCAA+TGG | + | chr1_1:46815467-46815486 | Msa0024370:intron | 25.0% |
| ! | GTGATATAAAACTTCTCAAT+GGG | + | chr1_1:46815468-46815487 | Msa0024370:intron | 25.0% |
| ! | AAATACTTCGCACAAAAATA+AGG | - | chr1_1:46815596-46815615 | None:intergenic | 25.0% |
| ! | TAGTAAGCATATATTTCCTT+TGG | + | chr1_1:46815638-46815657 | Msa0024370:intron | 25.0% |
| !!! | CGAATAGTGAAAGTATTAAA+AGG | - | chr1_1:46815831-46815850 | None:intergenic | 25.0% |
| ! | AGTTGGTTACATATTTATGT+TGG | + | chr1_1:46815921-46815940 | Msa0024370:intron | 25.0% |
| !!! | TTTGTGCTTTTAGAGTTAAT+TGG | + | chr1_1:46816144-46816163 | Msa0024370:CDS | 25.0% |
| !! | ATAAGAGTATATTGCTGAAA+TGG | + | chr1_1:46816239-46816258 | Msa0024370:intron | 25.0% |
| !!! | CAATTGTTGAATCTTTTTTG+TGG | - | chr1_1:46816386-46816405 | None:intergenic | 25.0% |
| ! | TTCCAGTAAATCTGATTATA+CGG | + | chr1_1:46816496-46816515 | Msa0024370:CDS | 25.0% |
| ! | TACATTCATCTTCAACAAAT+GGG | - | chr1_1:46816530-46816549 | None:intergenic | 25.0% |
| ! | ATACATTCATCTTCAACAAA+TGG | - | chr1_1:46816531-46816550 | None:intergenic | 25.0% |
| ! | ATCTTGCTTATACTAAGATT+AGG | + | chr1_1:46816844-46816863 | Msa0024370:three_prime_UTR | 25.0% |
| ! | ATAACATCGAATGCAAAAAA+AGG | - | chr1_1:46816905-46816924 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTTATGTCGCAG+GGG | - | chr1_1:46812150-46812169 | None:intergenic | 30.0% |
| ! | TGAACATATATTGCTTTGGA+AGG | + | chr1_1:46812790-46812809 | Msa0024370:CDS | 30.0% |
| GCATAAGTTACTTATCTTCT+AGG | + | chr1_1:46812871-46812890 | Msa0024370:intron | 30.0% | |
| GAGGTAAAACATACCAAAAA+TGG | - | chr1_1:46812954-46812973 | None:intergenic | 30.0% | |
| ! | AGTACATTTTCTTTCTCACA+AGG | - | chr1_1:46813027-46813046 | None:intergenic | 30.0% |
| !! | TAAAGTACTGCTTAAGTTGA+AGG | + | chr1_1:46813233-46813252 | Msa0024370:intron | 30.0% |
| GTTGAAGGAAAAATGTTGTA+CGG | + | chr1_1:46813248-46813267 | Msa0024370:intron | 30.0% | |
| TTGAAGGAAAAATGTTGTAC+GGG | + | chr1_1:46813249-46813268 | Msa0024370:intron | 30.0% | |
| AGATGGTAGAAACTAGATTT+AGG | + | chr1_1:46813433-46813452 | Msa0024370:intron | 30.0% | |
| AAACTAGATTTAGGTGGTTT+AGG | + | chr1_1:46813442-46813461 | Msa0024370:intron | 30.0% | |
| ! | GAGAAAAACATGGTTTTTGA+TGG | + | chr1_1:46813603-46813622 | Msa0024370:intron | 30.0% |
| CTTCAGAAATAAAATCTGCT+TGG | - | chr1_1:46813718-46813737 | None:intergenic | 30.0% | |
| !!! | AGCCAGATTTTAGTATTGAT+TGG | + | chr1_1:46813774-46813793 | Msa0024370:intron | 30.0% |
| GTCCAATCAATACTAAAATC+TGG | - | chr1_1:46813779-46813798 | None:intergenic | 30.0% | |
| TTTCCTGTAATCTGTTGTAT+TGG | - | chr1_1:46814109-46814128 | None:intergenic | 30.0% | |
| ATTATAAAGTCTATGAGAGG+AGG | - | chr1_1:46814345-46814364 | None:intergenic | 30.0% | |
| GAAACAACATCAACATGTTA+TGG | - | chr1_1:46814388-46814407 | None:intergenic | 30.0% | |
| AAGGAGTTACATAATGTGAT+TGG | - | chr1_1:46814426-46814445 | None:intergenic | 30.0% | |
| GTTCATGTTCTTGTATCATT+TGG | + | chr1_1:46814540-46814559 | Msa0024370:intron | 30.0% | |
| GATCAATTTGACAATTTGTC+TGG | - | chr1_1:46814628-46814647 | None:intergenic | 30.0% | |
| ATCCAAAATCCTTGAAGTTT+AGG | + | chr1_1:46814645-46814664 | Msa0024370:CDS | 30.0% | |
| ! | TTCCTAAACTTCAAGGATTT+TGG | - | chr1_1:46814650-46814669 | None:intergenic | 30.0% |
| AAGTTTAGGAAGAACGATTA+TGG | + | chr1_1:46814659-46814678 | Msa0024370:CDS | 30.0% | |
| TATTAAAATGTAGTGGTGGT+AGG | - | chr1_1:46814851-46814870 | None:intergenic | 30.0% | |
| GAGATATTAAAATGTAGTGG+TGG | - | chr1_1:46814855-46814874 | None:intergenic | 30.0% | |
| ! | CTTGTGTTTTCATTGTAGAT+TGG | + | chr1_1:46815054-46815073 | Msa0024370:intron | 30.0% |
| ATTGTAGATTGGAATTGATG+TGG | + | chr1_1:46815065-46815084 | Msa0024370:intron | 30.0% | |
| ATAAAACTTCTCAATGGGTA+AGG | + | chr1_1:46815473-46815492 | Msa0024370:intron | 30.0% | |
| CAGAATAGGAAGAAAAAGAA+TGG | - | chr1_1:46815732-46815751 | None:intergenic | 30.0% | |
| TTACATATGCCTCCTATAAA+TGG | - | chr1_1:46815779-46815798 | None:intergenic | 30.0% | |
| ACATACCTTAGAAATCACAT+GGG | - | chr1_1:46815892-46815911 | None:intergenic | 30.0% | |
| AACATACCTTAGAAATCACA+TGG | - | chr1_1:46815893-46815912 | None:intergenic | 30.0% | |
| ! | TATTTATGTTGGTGAACTAC+TGG | + | chr1_1:46815932-46815951 | Msa0024370:intron | 30.0% |
| ! | ATTTATGTTGGTGAACTACT+GGG | + | chr1_1:46815933-46815952 | Msa0024370:intron | 30.0% |
| ACAAAATCAAATAACTCGCA+TGG | - | chr1_1:46816036-46816055 | None:intergenic | 30.0% | |
| TCTTATGACGACAAAAGAAA+AGG | - | chr1_1:46816225-46816244 | None:intergenic | 30.0% | |
| CCAGAAAATAGTTTAACATG+TGG | - | chr1_1:46816305-46816324 | None:intergenic | 30.0% | |
| ! | CCACATGTTAAACTATTTTC+TGG | + | chr1_1:46816302-46816321 | Msa0024370:intron | 30.0% |
| TTCCGTATAATCAGATTTAC+TGG | - | chr1_1:46816501-46816520 | None:intergenic | 30.0% | |
| GTTGAAGATGAATGTATTTC+CGG | + | chr1_1:46816534-46816553 | Msa0024370:CDS | 30.0% | |
| ! | AGTAGACTAAAGTTGATCAC+TGG | + | chr1_1:46812180-46812199 | Msa0024370:five_prime_UTR | 35.0% |
| AATACCAGCCAAGCATTATA+AGG | - | chr1_1:46812206-46812225 | None:intergenic | 35.0% | |
| AAGTCAGTATCTATGAAGCA+CGG | + | chr1_1:46812495-46812514 | Msa0024370:intron | 35.0% | |
| TCTCAAATAATTAGCGGTGT+CGG | - | chr1_1:46812567-46812586 | None:intergenic | 35.0% | |
| ATCATACCTAGCACAAAGTA+AGG | - | chr1_1:46812717-46812736 | None:intergenic | 35.0% | |
| ACTTTGTGCTAGGTATGATT+TGG | + | chr1_1:46812718-46812737 | Msa0024370:intron | 35.0% | |
| TATCTTGTATGTTGCAATGC+AGG | + | chr1_1:46812923-46812942 | Msa0024370:intron | 35.0% | |
| ATCTTGTATGTTGCAATGCA+GGG | + | chr1_1:46812924-46812943 | Msa0024370:intron | 35.0% | |
| ! | TTGGTATGTTTTACCTCATG+AGG | + | chr1_1:46812957-46812976 | Msa0024370:CDS | 35.0% |
| TTTGTACACTTTACCTCATG+AGG | - | chr1_1:46812973-46812992 | None:intergenic | 35.0% | |
| TGGTAGAAACTAGATTTAGG+TGG | + | chr1_1:46813436-46813455 | Msa0024370:intron | 35.0% | |
| GACCTATGGATTCTTTAGTA+AGG | + | chr1_1:46813478-46813497 | Msa0024370:intron | 35.0% | |
| CTCCTTACTAAAGAATCCAT+AGG | - | chr1_1:46813483-46813502 | None:intergenic | 35.0% | |
| AAGGAGAGTAGATCAAATGA+AGG | + | chr1_1:46813497-46813516 | Msa0024370:intron | 35.0% | |
| ! | TGGTTTTTGATGGAACACTA+TGG | + | chr1_1:46813613-46813632 | Msa0024370:intron | 35.0% |
| ! | TAAACGAAACCACACGTTTT+TGG | - | chr1_1:46813801-46813820 | None:intergenic | 35.0% |
| GAACCAATACAACAGATTAC+AGG | + | chr1_1:46814103-46814122 | Msa0024370:intron | 35.0% | |
| GAATGAAAATACGACCCAAT+AGG | + | chr1_1:46814130-46814149 | Msa0024370:intron | 35.0% | |
| GCATTCTCGAATTTCCTATT+GGG | - | chr1_1:46814147-46814166 | None:intergenic | 35.0% | |
| !!! | GACTTTATAATTTTGGGACC+TGG | + | chr1_1:46814354-46814373 | Msa0024370:intron | 35.0% |
| !!! | ATGTTGTTTCCCTTTTCTTC+TGG | + | chr1_1:46814398-46814417 | Msa0024370:intron | 35.0% |
| ! | TGATTGGTTCCAGAAGAAAA+GGG | - | chr1_1:46814410-46814429 | None:intergenic | 35.0% |
| ATACATATAGCCTGCTTGTT+TGG | + | chr1_1:46814493-46814512 | Msa0024370:intron | 35.0% | |
| TTCTTTCTATATCGCAACAG+AGG | + | chr1_1:46814569-46814588 | Msa0024370:intron | 35.0% | |
| ATCGTTCTTCCTAAACTTCA+AGG | - | chr1_1:46814657-46814676 | None:intergenic | 35.0% | |
| AGAATAGAAAAACACACCTC+AGG | - | chr1_1:46814689-46814708 | None:intergenic | 35.0% | |
| ! | ACTTCTTCTTTGATAGCATG+TGG | + | chr1_1:46814879-46814898 | Msa0024370:CDS | 35.0% |
| CTGACAAAAAAGAGTCAAGT+TGG | - | chr1_1:46815310-46815329 | None:intergenic | 35.0% | |
| TGACTCATTGAACTACTAAC+TGG | + | chr1_1:46815341-46815360 | Msa0024370:intron | 35.0% | |
| !! | TTGTTAGCTCTAGTCTTTAG+TGG | + | chr1_1:46815548-46815567 | Msa0024370:intron | 35.0% |
| ATAAAGCAGGTAAGTACCAA+AGG | - | chr1_1:46815657-46815676 | None:intergenic | 35.0% | |
| ! | CAGAGACATTTGCCATTTAT+AGG | + | chr1_1:46815764-46815783 | Msa0024370:intron | 35.0% |
| ! | AGACATTTGCCATTTATAGG+AGG | + | chr1_1:46815767-46815786 | Msa0024370:intron | 35.0% |
| !! | ATATGTAAAAGCACTGGGAA+GGG | + | chr1_1:46815791-46815810 | Msa0024370:CDS | 35.0% |
| CATACCTTAGAAATCACATG+GGG | - | chr1_1:46815891-46815910 | None:intergenic | 35.0% | |
| AGGTATGTTTCTTGCAAAGT+TGG | + | chr1_1:46815904-46815923 | Msa0024370:intron | 35.0% | |
| ! | TTTATGTTGGTGAACTACTG+GGG | + | chr1_1:46815934-46815953 | Msa0024370:intron | 35.0% |
| GATTTCAGCCCGAATATTTA+GGG | - | chr1_1:46815982-46816001 | None:intergenic | 35.0% | |
| !!! | CAAGAGTTTATTTTGCTGAC+AGG | + | chr1_1:46816062-46816081 | Msa0024370:intron | 35.0% |
| AATTGCTTGAGAGATTCTTC+AGG | - | chr1_1:46816119-46816138 | None:intergenic | 35.0% | |
| TGAAGAATCTCTCAAGCAAT+TGG | + | chr1_1:46816118-46816137 | Msa0024370:CDS | 35.0% | |
| ! | GTTGTCCTTTTCTATGCAAA+CGG | - | chr1_1:46816184-46816203 | None:intergenic | 35.0% |
| AAATGCAGCAACAATTGTTG+TGG | + | chr1_1:46816330-46816349 | Msa0024370:intron | 35.0% | |
| GCAATTTGAGTAGCTGATAA+TGG | + | chr1_1:46816441-46816460 | Msa0024370:intron | 35.0% | |
| ! | TGTATGTGGTTTGTAGACAA+AGG | + | chr1_1:46816468-46816487 | Msa0024370:intron | 35.0% |
| ! | GTATGTGGTTTGTAGACAAA+GGG | + | chr1_1:46816469-46816488 | Msa0024370:intron | 35.0% |
| GCTGATATCTACTGAAACAT+TGG | + | chr1_1:46816711-46816730 | Msa0024370:three_prime_UTR | 35.0% | |
| !! | ATCACTGGCCTTATAATGCT+TGG | + | chr1_1:46812195-46812214 | Msa0024370:five_prime_UTR | 40.0% |
| AGTATCTATGAAGCACGGAT+AGG | + | chr1_1:46812500-46812519 | Msa0024370:intron | 40.0% | |
| GTATCTATGAAGCACGGATA+GGG | + | chr1_1:46812501-46812520 | Msa0024370:intron | 40.0% | |
| CAACTTCCAGCACAAAAGTA+TGG | + | chr1_1:46812849-46812868 | Msa0024370:intron | 40.0% | |
| ! | CTTATGCCATACTTTTGTGC+TGG | - | chr1_1:46812858-46812877 | None:intergenic | 40.0% |
| AAAATGTACTTCGCATGCGT+GGG | + | chr1_1:46813037-46813056 | Msa0024370:CDS | 40.0% | |
| CGCTTACTTTATGTTGGTGT+TGG | - | chr1_1:46813298-46813317 | None:intergenic | 40.0% | |
| ACACCAACATAAAGTAAGCG+TGG | + | chr1_1:46813298-46813317 | Msa0024370:intron | 40.0% | |
| CAGATATGAGGATGTTGTGT+TGG | + | chr1_1:46813321-46813340 | Msa0024370:intron | 40.0% | |
| ! | TCTACCATCTTTTCTCGTGT+AGG | - | chr1_1:46813423-46813442 | None:intergenic | 40.0% |
| GAATCAGATCAAGAGAGGTA+GGG | + | chr1_1:46813521-46813540 | Msa0024370:intron | 40.0% | |
| AATCAGATCAAGAGAGGTAG+GGG | + | chr1_1:46813522-46813541 | Msa0024370:intron | 40.0% | |
| ! | AAGTCTTTTCCCACTAAGTG+GGG | - | chr1_1:46813662-46813681 | None:intergenic | 40.0% |
| ! | CAAGTCTTTTCCCACTAAGT+GGG | - | chr1_1:46813663-46813682 | None:intergenic | 40.0% |
| TTGATTGGACCAAAAACGTG+TGG | + | chr1_1:46813789-46813808 | Msa0024370:intron | 40.0% | |
| AAACGTGTGGTTTCGTTTAG+TGG | + | chr1_1:46813802-46813821 | Msa0024370:intron | 40.0% | |
| TCATAGCAACTAGCGAGATT+TGG | + | chr1_1:46813834-46813853 | Msa0024370:intron | 40.0% | |
| !!! | ATCGGTGTTGTTTTGAGCAT+TGG | + | chr1_1:46813927-46813946 | Msa0024370:intron | 40.0% |
| AATTTGTGTGCGAGACTTTC+TGG | - | chr1_1:46814032-46814051 | None:intergenic | 40.0% | |
| GAAAGTCTCGCACACAAATT+AGG | + | chr1_1:46814032-46814051 | Msa0024370:intron | 40.0% | |
| GGCATTCTCGAATTTCCTAT+TGG | - | chr1_1:46814148-46814167 | None:intergenic | 40.0% | |
| ! | AGTTACACTTGCAAGAGCAT+AGG | - | chr1_1:46814169-46814188 | None:intergenic | 40.0% |
| TCACTGTGGAGAAGGATAAA+GGG | - | chr1_1:46814205-46814224 | None:intergenic | 40.0% | |
| TATTTGAGTCACTGTGGAGA+AGG | - | chr1_1:46814213-46814232 | None:intergenic | 40.0% | |
| TGCTTGATCAAAACTCCCAA+GGG | - | chr1_1:46814306-46814325 | None:intergenic | 40.0% | |
| ! | GTGATTGGTTCCAGAAGAAA+AGG | - | chr1_1:46814411-46814430 | None:intergenic | 40.0% |
| ATAGCATGTGGAGTAACTGT+CGG | + | chr1_1:46814891-46814910 | Msa0024370:CDS | 40.0% | |
| TTGATGTGGAAGAGAAGCAA+AGG | + | chr1_1:46815079-46815098 | Msa0024370:CDS | 40.0% | |
| !! | AGAAAAGTATCGACGAGCAA+AGG | - | chr1_1:46815127-46815146 | None:intergenic | 40.0% |
| GCTAGCATTTCTACTTCATG+TGG | - | chr1_1:46815150-46815169 | None:intergenic | 40.0% | |
| ACATTGTAGATCCTGAGCTT+CGG | + | chr1_1:46815172-46815191 | Msa0024370:CDS | 40.0% | |
| ATTGAATTTCGCTGCGCTAT+TGG | + | chr1_1:46815240-46815259 | Msa0024370:intron | 40.0% | |
| TTGAATTTCGCTGCGCTATT+GGG | + | chr1_1:46815241-46815260 | Msa0024370:intron | 40.0% | |
| ACTCAGTTAGGATTGAGAGT+TGG | + | chr1_1:46815276-46815295 | Msa0024370:intron | 40.0% | |
| CTCAGTTAGGATTGAGAGTT+GGG | + | chr1_1:46815277-46815296 | Msa0024370:intron | 40.0% | |
| TGTAAGTGAAGCTGCAGAAT+AGG | - | chr1_1:46815746-46815765 | None:intergenic | 40.0% | |
| !! | GAGGCATATGTAAAAGCACT+GGG | + | chr1_1:46815786-46815805 | Msa0024370:CDS | 40.0% |
| !! | CATATGTAAAAGCACTGGGA+AGG | + | chr1_1:46815790-46815809 | Msa0024370:CDS | 40.0% |
| !! | TATGTAAAAGCACTGGGAAG+GGG | + | chr1_1:46815792-46815811 | Msa0024370:CDS | 40.0% |
| CGATTAAGAGACCATGTGAA+AGG | + | chr1_1:46815849-46815868 | Msa0024370:CDS | 40.0% | |
| TTAAGAGACCATGTGAAAGG+AGG | + | chr1_1:46815852-46815871 | Msa0024370:CDS | 40.0% | |
| CGATTTCAGCCCGAATATTT+AGG | - | chr1_1:46815983-46816002 | None:intergenic | 40.0% | |
| GAAATTACTGTTGAGCCTTC+TGG | + | chr1_1:46816090-46816109 | Msa0024370:CDS | 40.0% | |
| TTCATAACTGCACATGCTGT+CGG | + | chr1_1:46816277-46816296 | Msa0024370:intron | 40.0% | |
| !! | CTGATAATGGCTCATGTATG+TGG | + | chr1_1:46816454-46816473 | Msa0024370:intron | 40.0% |
| ATCAGTGTACGTGTCGTGTA+CGG | - | chr1_1:46812543-46812562 | None:intergenic | 45.0% | |
| ! | TATATGCGTCGATGTCGTGT+TGG | + | chr1_1:46812609-46812628 | Msa0024370:intron | 45.0% |
| ! | TTTTGTGCTGGAAGTTGCAC+GGG | - | chr1_1:46812846-46812865 | None:intergenic | 45.0% |
| ! | CTTTTGTGCTGGAAGTTGCA+CGG | - | chr1_1:46812847-46812866 | None:intergenic | 45.0% |
| ! | AATGCAGGGAAGCCCATTTT+TGG | + | chr1_1:46812938-46812957 | Msa0024370:intron | 45.0% |
| GAAAATGTACTTCGCATGCG+TGG | + | chr1_1:46813036-46813055 | Msa0024370:CDS | 45.0% | |
| AAATGTACTTCGCATGCGTG+GGG | + | chr1_1:46813038-46813057 | Msa0024370:CDS | 45.0% | |
| !!! | GAGCTAAGAGAGCACTTTTC+TGG | - | chr1_1:46813071-46813090 | None:intergenic | 45.0% |
| !! | TTGAAATGGAGGAGTGTCTC+AGG | + | chr1_1:46813195-46813214 | Msa0024370:intron | 45.0% |
| TGTTGTACGGGATAGAGTGT+CGG | + | chr1_1:46813261-46813280 | Msa0024370:intron | 45.0% | |
| CTGCCACGCTTACTTTATGT+TGG | - | chr1_1:46813304-46813323 | None:intergenic | 45.0% | |
| AAGTAAGCGTGGCAGATATG+AGG | + | chr1_1:46813309-46813328 | Msa0024370:intron | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | + | chr1_1:46813329-46813348 | Msa0024370:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGTT+GGG | + | chr1_1:46813391-46813410 | Msa0024370:intron | 45.0% | |
| AGCACCTACACGAGAAAAGA+TGG | + | chr1_1:46813416-46813435 | Msa0024370:intron | 45.0% | |
| AAGGCGAATCAGATCAAGAG+AGG | + | chr1_1:46813516-46813535 | Msa0024370:intron | 45.0% | |
| CGAATCAGATCAAGAGAGGT+AGG | + | chr1_1:46813520-46813539 | Msa0024370:intron | 45.0% | |
| ! | CCAAGTCTTTTCCCACTAAG+TGG | - | chr1_1:46813664-46813683 | None:intergenic | 45.0% |
| CCACTTAGTGGGAAAAGACT+TGG | + | chr1_1:46813661-46813680 | Msa0024370:intron | 45.0% | |
| ATCAATGTCCTGTACCTCAG+TGG | + | chr1_1:46813981-46814000 | Msa0024370:intron | 45.0% | |
| GTCACTGTGGAGAAGGATAA+AGG | - | chr1_1:46814206-46814225 | None:intergenic | 45.0% | |
| CAGTTGAGAGAGCGATTACA+GGG | - | chr1_1:46814253-46814272 | None:intergenic | 45.0% | |
| GGAGTTACAACTTTATGCCG+AGG | - | chr1_1:46814279-46814298 | None:intergenic | 45.0% | |
| AGTTGTAACTCCTATCCCCT+TGG | + | chr1_1:46814287-46814306 | Msa0024370:intron | 45.0% | |
| GTTGTAACTCCTATCCCCTT+GGG | + | chr1_1:46814288-46814307 | Msa0024370:intron | 45.0% | |
| ATCAAAACTCCCAAGGGGAT+AGG | - | chr1_1:46814300-46814319 | None:intergenic | 45.0% | |
| GCTTGATCAAAACTCCCAAG+GGG | - | chr1_1:46814305-46814324 | None:intergenic | 45.0% | |
| GTGCTTGATCAAAACTCCCA+AGG | - | chr1_1:46814307-46814326 | None:intergenic | 45.0% | |
| !!! | TAATTTTGGGACCTGGTCTC+AGG | + | chr1_1:46814361-46814380 | Msa0024370:intron | 45.0% |
| CATATAGCCTGCTTGTTTGG+TGG | + | chr1_1:46814496-46814515 | Msa0024370:intron | 45.0% | |
| AGATGTTCCACCAAACAAGC+AGG | - | chr1_1:46814506-46814525 | None:intergenic | 45.0% | |
| GAACGATTATGGCAAACCTG+AGG | + | chr1_1:46814670-46814689 | Msa0024370:CDS | 45.0% | |
| ACTGTCAATACGCTGACGAT+CGG | + | chr1_1:46814823-46814842 | Msa0024370:CDS | 45.0% | |
| ! | CAGAGACAATAGTCTTGAGC+AGG | - | chr1_1:46815023-46815042 | None:intergenic | 45.0% |
| ATGTGGAAGAGAAGCAAAGG+AGG | + | chr1_1:46815082-46815101 | Msa0024370:CDS | 45.0% | |
| ! | TGTGACTAGGGAGCATAAGT+AGG | + | chr1_1:46815694-46815713 | Msa0024370:intron | 45.0% |
| ! | GGAGGCATATGTAAAAGCAC+TGG | + | chr1_1:46815785-46815804 | Msa0024370:intron | 45.0% |
| CATGGATACCTCCTTTCACA+TGG | - | chr1_1:46815863-46815882 | None:intergenic | 45.0% | |
| AAATCACATGGGGTGGAACA+TGG | - | chr1_1:46815881-46815900 | None:intergenic | 45.0% | |
| TCCACCCCATGTGATTTCTA+AGG | + | chr1_1:46815884-46815903 | Msa0024370:CDS | 45.0% | |
| ACCTTAGAAATCACATGGGG+TGG | - | chr1_1:46815888-46815907 | None:intergenic | 45.0% | |
| ACGGGCATGCCCTAAATATT+CGG | + | chr1_1:46815970-46815989 | Msa0024370:intron | 45.0% | |
| ACTCGCATGGTACTAACACA+AGG | - | chr1_1:46816023-46816042 | None:intergenic | 45.0% | |
| AGATTCTTCAGGTCACCAGA+AGG | - | chr1_1:46816108-46816127 | None:intergenic | 45.0% | |
| ! | GTCCTTTTCTATGCAAACGG+CGG | - | chr1_1:46816181-46816200 | None:intergenic | 45.0% |
| GAAAAGGACAACACCAATGC+AGG | + | chr1_1:46816192-46816211 | Msa0024370:CDS | 45.0% | |
| ! | AAAAGGCATGCTACCTGCAT+TGG | - | chr1_1:46816208-46816227 | None:intergenic | 45.0% |
| TATTTCCGGAACAGACTCTG+CGG | + | chr1_1:46816548-46816567 | Msa0024370:CDS | 45.0% | |
| TGCAGAGGTAAATGGGGAAA+AGG | - | chr1_1:46816751-46816770 | None:intergenic | 45.0% | |
| AACCACTGCAGAGGTAAATG+GGG | - | chr1_1:46816757-46816776 | None:intergenic | 45.0% | |
| CAACCACTGCAGAGGTAAAT+GGG | - | chr1_1:46816758-46816777 | None:intergenic | 45.0% | |
| ACAACCACTGCAGAGGTAAA+TGG | - | chr1_1:46816759-46816778 | None:intergenic | 45.0% | |
| !!! | TTTTTTATTTTTTTTGTAAT+CGG | + | chr1_1:46813909-46813928 | Msa0024370:intron | 5.0% |
| CCTCTTCTCTTCTCCTCCTA+CGG | + | chr1_1:46812034-46812053 | Msa0024370:five_prime_UTR | 50.0% | |
| !! | ATGGTGGGTGGTGGATTATG+AGG | - | chr1_1:46812060-46812079 | None:intergenic | 50.0% |
| !! | GAAAAGTTGATGGTGGGTGG+TGG | - | chr1_1:46812069-46812088 | None:intergenic | 50.0% |
| !! | GGAGAAAAGTTGATGGTGGG+TGG | - | chr1_1:46812072-46812091 | None:intergenic | 50.0% |
| !! | GGCGGAGAAAAGTTGATGGT+GGG | - | chr1_1:46812075-46812094 | None:intergenic | 50.0% |
| !! | TGGCGGAGAAAAGTTGATGG+TGG | - | chr1_1:46812076-46812095 | None:intergenic | 50.0% |
| ! | CAGTGGCGGAGAAAAGTTGA+TGG | - | chr1_1:46812079-46812098 | None:intergenic | 50.0% |
| GAGAAAGAGAAGAGGAACGG+TGG | - | chr1_1:46812128-46812147 | None:intergenic | 50.0% | |
| GGGGAGAAAGAGAAGAGGAA+CGG | - | chr1_1:46812131-46812150 | None:intergenic | 50.0% | |
| !! | CTGGCCTTATAATGCTTGGC+TGG | + | chr1_1:46812199-46812218 | Msa0024370:five_prime_UTR | 50.0% |
| ACGGATAGGGACACTGGATA+CGG | + | chr1_1:46812514-46812533 | Msa0024370:intron | 50.0% | |
| TTATGAAGCACGACGCTCCT+CGG | - | chr1_1:46812659-46812678 | None:intergenic | 50.0% | |
| GTGGTGCCTTACTTTGTGCT+AGG | + | chr1_1:46812708-46812727 | Msa0024370:intron | 50.0% | |
| CGTTGAACTCATGCGTACTC+AGG | - | chr1_1:46812745-46812764 | None:intergenic | 50.0% | |
| TGCTCTCTTAGCTCGTGCAT+TGG | + | chr1_1:46813077-46813096 | Msa0024370:CDS | 50.0% | |
| ! | GTTGTACGGGATAGAGTGTC+GGG | + | chr1_1:46813262-46813281 | Msa0024370:intron | 50.0% |
| GGATGTGTGGCAAGACTAGA+CGG | + | chr1_1:46813342-46813361 | Msa0024370:intron | 50.0% | |
| GATGTGTGGCAAGACTAGAC+GGG | + | chr1_1:46813343-46813362 | Msa0024370:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+TGG | + | chr1_1:46813390-46813409 | Msa0024370:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | + | chr1_1:46813392-46813411 | Msa0024370:intron | 50.0% | |
| GGTGGTTTAGGCATGTAGAG+AGG | + | chr1_1:46813454-46813473 | Msa0024370:intron | 50.0% | |
| GCATGTAGAGAGGTGACCTA+TGG | + | chr1_1:46813464-46813483 | Msa0024370:intron | 50.0% | |
| ! | CTTTTCCCACTAAGTGGGGT+CGG | - | chr1_1:46813658-46813677 | None:intergenic | 50.0% |
| CACAATTGCCACTGAGGTAC+AGG | - | chr1_1:46813992-46814011 | None:intergenic | 50.0% | |
| GTACCTCAGTGGCAATTGTG+AGG | + | chr1_1:46813992-46814011 | Msa0024370:intron | 50.0% | |
| GATCCTCACAATTGCCACTG+AGG | - | chr1_1:46813998-46814017 | None:intergenic | 50.0% | |
| ! | GTGCGAGACTTTCTGGTATC+TGG | - | chr1_1:46814025-46814044 | None:intergenic | 50.0% |
| TGTGGAGAAGGATAAAGGGC+GGG | - | chr1_1:46814201-46814220 | None:intergenic | 50.0% | |
| CTGTGGAGAAGGATAAAGGG+CGG | - | chr1_1:46814202-46814221 | None:intergenic | 50.0% | |
| GGGGGTTATTTGAGTCACTG+TGG | - | chr1_1:46814219-46814238 | None:intergenic | 50.0% | |
| TGAGAGAGCGATTACAGGGA+GGG | - | chr1_1:46814249-46814268 | None:intergenic | 50.0% | |
| TTGAGAGAGCGATTACAGGG+AGG | - | chr1_1:46814250-46814269 | None:intergenic | 50.0% | |
| GCAGTTGAGAGAGCGATTAC+AGG | - | chr1_1:46814254-46814273 | None:intergenic | 50.0% | |
| ! | ATGTTGGTGAACTACTGGGG+TGG | + | chr1_1:46815937-46815956 | Msa0024370:intron | 50.0% |
| CGGGCATGCCCTAAATATTC+GGG | + | chr1_1:46815971-46815990 | Msa0024370:intron | 50.0% | |
| TGCCGCCGTTTGCATAGAAA+AGG | + | chr1_1:46816176-46816195 | Msa0024370:CDS | 50.0% | |
| ACAGACTCTGCGGAAGTCAT+TGG | + | chr1_1:46816558-46816577 | Msa0024370:CDS | 50.0% | |
| CAGACTCTGCGGAAGTCATT+GGG | + | chr1_1:46816559-46816578 | Msa0024370:CDS | 50.0% | |
| AGACTCTGCGGAAGTCATTG+GGG | + | chr1_1:46816560-46816579 | Msa0024370:CDS | 50.0% | |
| TTCCCCATTTACCTCTGCAG+TGG | + | chr1_1:46816752-46816771 | Msa0024370:three_prime_UTR | 50.0% | |
| CCGTAGGAGGAGAAGAGAAG+AGG | - | chr1_1:46812037-46812056 | None:intergenic | 55.0% | |
| ! | GTGGATTATGAGGCCGTAGG+AGG | - | chr1_1:46812050-46812069 | None:intergenic | 55.0% |
| !! | GTGGTGGATTATGAGGCCGT+AGG | - | chr1_1:46812053-46812072 | None:intergenic | 55.0% |
| AGAAGAGGAACGGTGGTCGA+CGG | - | chr1_1:46812121-46812140 | None:intergenic | 55.0% | |
| TCGCAGGGGAGAAAGAGAAG+AGG | - | chr1_1:46812136-46812155 | None:intergenic | 55.0% | |
| TGAAGCACGGATAGGGACAC+TGG | + | chr1_1:46812508-46812527 | Msa0024370:intron | 55.0% | |
| ! | ATGCGTCGATGTCGTGTTGG+TGG | + | chr1_1:46812612-46812631 | Msa0024370:intron | 55.0% |
| CACGTGACATACCTGATCCG+AGG | + | chr1_1:46812639-46812658 | Msa0024370:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_1:46813649-46813668 | Msa0024370:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_1:46813650-46813669 | Msa0024370:intron | 55.0% | |
| ATTACAGGGAGGGCAGAGTG+GGG | - | chr1_1:46814239-46814258 | None:intergenic | 55.0% | |
| GATTACAGGGAGGGCAGAGT+GGG | - | chr1_1:46814240-46814259 | None:intergenic | 55.0% | |
| CGCTCTCTCAACTGCTTCCT+CGG | + | chr1_1:46814259-46814278 | Msa0024370:intron | 55.0% | |
| CATGTTATGGGCCTGAGACC+AGG | - | chr1_1:46814375-46814394 | None:intergenic | 55.0% | |
| !! | TGGAGTAACTGTCGGCTCAC+CGG | + | chr1_1:46814899-46814918 | Msa0024370:CDS | 55.0% |
| CTGGGGTGGCTACTGTCATA+CGG | + | chr1_1:46815951-46815970 | Msa0024370:intron | 55.0% | |
| TGGGGTGGCTACTGTCATAC+GGG | + | chr1_1:46815952-46815971 | Msa0024370:intron | 55.0% | |
| GACTTCCGCAGAGTCTGTTC+CGG | - | chr1_1:46816556-46816575 | None:intergenic | 55.0% | |
| GACTCTGCGGAAGTCATTGG+GGG | + | chr1_1:46816561-46816580 | Msa0024370:CDS | 55.0% | |
| ACGTGCAACAACCACTGCAG+AGG | - | chr1_1:46816766-46816785 | None:intergenic | 55.0% | |
| GAAATCGATCAGCGTGCGCG+AGG | - | chr1_1:46812294-46812313 | None:intergenic | 60.0% | |
| ! | CGTCGATGTCGTGTTGGTGG+CGG | + | chr1_1:46812615-46812634 | Msa0024370:intron | 60.0% |
| CGGCAAACAGCATGATGCGG+TGG | - | chr1_1:46812823-46812842 | None:intergenic | 60.0% | |
| GGGCGGCAAACAGCATGATG+CGG | - | chr1_1:46812826-46812845 | None:intergenic | 60.0% | |
| TGTGCTGGAAGTTGCACGGG+CGG | - | chr1_1:46812843-46812862 | None:intergenic | 60.0% | |
| TGTACTTCGCATGCGTGGGG+AGG | + | chr1_1:46813041-46813060 | Msa0024370:CDS | 60.0% | |
| !! | GTACGGGATAGAGTGTCGGG+CGG | + | chr1_1:46813265-46813284 | Msa0024370:intron | 60.0% |
| GAGAAGGATAAAGGGCGGGC+TGG | - | chr1_1:46814197-46814216 | None:intergenic | 60.0% | |
| TTACAGGGAGGGCAGAGTGG+GGG | - | chr1_1:46814238-46814257 | None:intergenic | 60.0% | |
| CGATTACAGGGAGGGCAGAG+TGG | - | chr1_1:46814241-46814260 | None:intergenic | 60.0% | |
| AGATCCTGAGCTTCGGCGTC+AGG | + | chr1_1:46815179-46815198 | Msa0024370:CDS | 60.0% | |
| AACTCCTGACGCCGAAGCTC+AGG | - | chr1_1:46815186-46815205 | None:intergenic | 60.0% | |
| GCAGTGGTTGTTGCACGTGC+AGG | + | chr1_1:46816768-46816787 | Msa0024370:three_prime_UTR | 60.0% | |
| !! | GAGGAAGGTGTCGGCAGTGG+CGG | - | chr1_1:46812093-46812112 | None:intergenic | 65.0% |
| !! | GTGGAGGAAGGTGTCGGCAG+TGG | - | chr1_1:46812096-46812115 | None:intergenic | 65.0% |
| ! | ACGGCGGTGGAGGAAGGTGT+CGG | - | chr1_1:46812102-46812121 | None:intergenic | 65.0% |
| AGAGGAACGGTGGTCGACGG+CGG | - | chr1_1:46812118-46812137 | None:intergenic | 65.0% | |
| GCGTCTGGCGGAGTGTGAGA+GGG | - | chr1_1:46812247-46812266 | None:intergenic | 65.0% | |
| GAGGGACAACGGCGGAGGAA+GGG | - | chr1_1:46812272-46812291 | None:intergenic | 65.0% | |
| TCGATCAGCGTGCGCGAGGA+GGG | - | chr1_1:46812290-46812309 | None:intergenic | 65.0% | |
| ATCGATCAGCGTGCGCGAGG+AGG | - | chr1_1:46812291-46812310 | None:intergenic | 65.0% | |
| AGCACGACGCTCCTCGGATC+AGG | - | chr1_1:46812653-46812672 | None:intergenic | 65.0% | |
| TACAGGGAGGGCAGAGTGGG+GGG | - | chr1_1:46814237-46814256 | None:intergenic | 65.0% | |
| TGGTCGACGGCGGTGGAGGA+AGG | - | chr1_1:46812108-46812127 | None:intergenic | 70.0% | |
| CGCGTCTGGCGGAGTGTGAG+AGG | - | chr1_1:46812248-46812267 | None:intergenic | 70.0% | |
| GGAGGAAGGGTCGCGTCTGG+CGG | - | chr1_1:46812259-46812278 | None:intergenic | 70.0% | |
| GGAGGGACAACGGCGGAGGA+AGG | - | chr1_1:46812273-46812292 | None:intergenic | 70.0% | |
| TGCGCGAGGAGGGACAACGG+CGG | - | chr1_1:46812280-46812299 | None:intergenic | 70.0% | |
| GCGTGCGCGAGGAGGGACAA+CGG | - | chr1_1:46812283-46812302 | None:intergenic | 70.0% | |
| ACGGTGGTCGACGGCGGTGG+AGG | - | chr1_1:46812112-46812131 | None:intergenic | 75.0% | |
| GGAACGGTGGTCGACGGCGG+TGG | - | chr1_1:46812115-46812134 | None:intergenic | 75.0% | |
| GGCGGAGGAAGGGTCGCGTC+TGG | - | chr1_1:46812262-46812281 | None:intergenic | 75.0% | |
| GCGAGGAGGGACAACGGCGG+AGG | - | chr1_1:46812277-46812296 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46812028 | 46816961 | 46812028 | ID=Msa0024370;Name=Msa0024370 |
| chr1_1 | mRNA | 46812028 | 46816961 | 46812028 | ID=Msa0024370-mRNA-1;Parent=Msa0024370;Name=Msa0024370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=317|1|1|1|0.87|0.77|9|353|329 |
| chr1_1 | exon | 46812028 | 46812321 | 46812028 | ID=Msa0024370-mRNA-1:exon:13329;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46812730 | 46812865 | 46812730 | ID=Msa0024370-mRNA-1:exon:13330;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46812945 | 46813120 | 46812945 | ID=Msa0024370-mRNA-1:exon:13331;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46814624 | 46814691 | 46814624 | ID=Msa0024370-mRNA-1:exon:13332;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46814819 | 46814920 | 46814819 | ID=Msa0024370-mRNA-1:exon:13333;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46815072 | 46815227 | 46815072 | ID=Msa0024370-mRNA-1:exon:13334;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46815786 | 46815905 | 46815786 | ID=Msa0024370-mRNA-1:exon:13335;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46816084 | 46816213 | 46816084 | ID=Msa0024370-mRNA-1:exon:13336;Parent=Msa0024370-mRNA-1 |
| chr1_1 | exon | 46816484 | 46816961 | 46816484 | ID=Msa0024370-mRNA-1:exon:13337;Parent=Msa0024370-mRNA-1 |
| chr1_1 | five_prime_UTR | 46812028 | 46812321 | 46812028 | ID=Msa0024370-mRNA-1:five_prime_utr;Parent=Msa0024370-mRNA-1 |
| chr1_1 | five_prime_UTR | 46812730 | 46812752 | 46812730 | ID=Msa0024370-mRNA-1:five_prime_utr;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46812753 | 46812865 | 46812753 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46812945 | 46813120 | 46812945 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46814624 | 46814691 | 46814624 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46814819 | 46814920 | 46814819 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46815072 | 46815227 | 46815072 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46815786 | 46815905 | 46815786 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46816084 | 46816213 | 46816084 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | CDS | 46816484 | 46816608 | 46816484 | ID=Msa0024370-mRNA-1:cds;Parent=Msa0024370-mRNA-1 |
| chr1_1 | three_prime_UTR | 46816609 | 46816961 | 46816609 | ID=Msa0024370-mRNA-1:three_prime_utr;Parent=Msa0024370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
