Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120230 | XP_013467972.1 | 97.568 | 329 | 8 | 0 | 1 | 329 | 1 | 329 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120230 | sp|P39144|LP14_BACIU | 32.240 | 183 | 107 | 6 | 57 | 239 | 18 | 183 | 8.93e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120230 | A0A072VJ05 | 97.568 | 329 | 8 | 0 | 1 | 329 | 1 | 329 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024370 | Msa0120230 | 0.934583 | 3.227704e-96 | -8.615850e-47 |
| Msa0120230 | Msa0569960 | -0.804536 | 2.060824e-49 | -8.615850e-47 |
| Msa0120230 | Msa1352890 | -0.803146 | 4.007438e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120230 | MtrunA17_Chr8g0385361 | 95.152 | 330 | 15 | 1 | 1 | 329 | 1 | 330 | 0.0 | 648 |
| Msa0120230 | MtrunA17_Chr1g0178461 | 97.551 | 245 | 6 | 0 | 1 | 245 | 1 | 245 | 4.23e-180 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120230 | AT3G11470.1 | 58.020 | 293 | 115 | 2 | 20 | 312 | 11 | 295 | 2.14e-118 | 343 |
| Msa0120230 | AT3G11470.4 | 57.664 | 274 | 109 | 2 | 20 | 293 | 11 | 277 | 1.71e-108 | 318 |
| Msa0120230 | AT3G11470.8 | 60.251 | 239 | 87 | 2 | 74 | 312 | 1 | 231 | 4.39e-98 | 290 |
| Msa0120230 | AT3G11470.6 | 63.721 | 215 | 78 | 0 | 20 | 234 | 11 | 225 | 8.23e-98 | 289 |
| Msa0120230 | AT3G11470.5 | 63.721 | 215 | 78 | 0 | 20 | 234 | 11 | 225 | 8.23e-98 | 289 |
| Msa0120230 | AT3G11470.2 | 62.791 | 215 | 80 | 0 | 20 | 234 | 11 | 225 | 4.02e-95 | 282 |
| Msa0120230 | AT2G02765.3 | 61.611 | 211 | 81 | 0 | 28 | 238 | 14 | 224 | 2.46e-93 | 278 |
| Msa0120230 | AT2G02765.1 | 61.611 | 211 | 81 | 0 | 28 | 238 | 14 | 224 | 2.46e-93 | 278 |
| Msa0120230 | AT3G11470.9 | 57.604 | 217 | 84 | 2 | 96 | 312 | 2 | 210 | 5.89e-83 | 250 |
| Msa0120230 | AT3G11470.3 | 57.209 | 215 | 84 | 2 | 98 | 312 | 20 | 226 | 4.86e-81 | 246 |
| Msa0120230 | AT2G02765.2 | 53.081 | 211 | 78 | 1 | 28 | 238 | 14 | 203 | 7.72e-75 | 229 |
| Msa0120230 | AT2G02765.4 | 64.242 | 165 | 59 | 0 | 74 | 238 | 1 | 165 | 5.82e-74 | 226 |
| Msa0120230 | AT3G11470.7 | 56.633 | 196 | 78 | 2 | 98 | 293 | 20 | 208 | 2.83e-71 | 220 |
Find 121 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTAAACTTCAAGGATTT+TGG | 0.087791 | 1_3:+44870178 | None:intergenic |
| GTTGAAGATGAATGTATTTC+CGG | 0.209271 | 1_3:-44868291 | Msa0120230:CDS |
| ACAACCACTGCAGAGGTAAA+TGG | 0.283864 | 1_3:+44868069 | None:intergenic |
| GTCAGGAGTTTATTAAATTA+TGG | 0.287747 | 1_3:-44869629 | Msa0120230:CDS |
| TTCCGTATAATCAGATTTAC+TGG | 0.289106 | 1_3:+44868327 | None:intergenic |
| CGAATAGTGAAAGTATTAAA+AGG | 0.291999 | 1_3:+44868997 | None:intergenic |
| ATCCAAAATCCTTGAAGTTT+AGG | 0.294051 | 1_3:-44870180 | Msa0120230:CDS |
| TGGATTATTACATTACAAAT+TGG | 0.315129 | 1_3:+44868028 | None:intergenic |
| TTAGTGATTCCATAATAAAA+TGG | 0.322493 | 1_3:-44868216 | Msa0120230:three_prime_UTR |
| AAGTTTAGGAAGAACGATTA+TGG | 0.333307 | 1_3:-44870166 | Msa0120230:CDS |
| TCCACCCCATGTGATTTCTA+AGG | 0.335718 | 1_3:-44868941 | Msa0120230:intron |
| AATACCAGCCAAGCATTATA+AGG | 0.338652 | 1_3:+44872622 | None:intergenic |
| ATCGTTCTTCCTAAACTTCA+AGG | 0.339814 | 1_3:+44870171 | None:intergenic |
| TTCCAGTAAATCTGATTATA+CGG | 0.348190 | 1_3:-44868329 | Msa0120230:CDS |
| TTTCAAAATATCGATTCAAT+AGG | 0.351288 | 1_3:+44871832 | None:intergenic |
| ACTTTGTGCTAGGTATGATT+TGG | 0.354426 | 1_3:-44872107 | Msa0120230:intron |
| GATCAATTTGACAATTTGTC+TGG | 0.364981 | 1_3:+44870200 | None:intergenic |
| CAACCACTGCAGAGGTAAAT+GGG | 0.372458 | 1_3:+44868070 | None:intergenic |
| GAAATTACTGTTGAGCCTTC+TGG | 0.381624 | 1_3:-44868735 | Msa0120230:CDS |
| CAGACTCTGCGGAAGTCATT+GGG | 0.390770 | 1_3:-44868266 | Msa0120230:CDS |
| ACAGACTCTGCGGAAGTCAT+TGG | 0.399046 | 1_3:-44868267 | Msa0120230:CDS |
| ATACATTCATCTTCAACAAA+TGG | 0.426875 | 1_3:+44868297 | None:intergenic |
| ATGATGAACATATATTGCTT+TGG | 0.429596 | 1_3:-44872039 | Msa0120230:CDS |
| TACATTCATCTTCAACAAAT+GGG | 0.430317 | 1_3:+44868298 | None:intergenic |
| AGATCCTGAGCTTCGGCGTC+AGG | 0.430983 | 1_3:-44869646 | Msa0120230:CDS |
| AACTCCTGACGCCGAAGCTC+AGG | 0.433331 | 1_3:+44869642 | None:intergenic |
| GGAACGGTGGTCGACGGCGG+TGG | 0.434345 | 1_3:+44872713 | None:intergenic |
| ACGGTGGTCGACGGCGGTGG+AGG | 0.434519 | 1_3:+44872716 | None:intergenic |
| TGAAGAATCTCTCAAGCAAT+TGG | 0.437764 | 1_3:-44868707 | Msa0120230:CDS |
| GGCGGAGGAAGGGTCGCGTC+TGG | 0.441351 | 1_3:+44872566 | None:intergenic |
| GACTTCCGCAGAGTCTGTTC+CGG | 0.449410 | 1_3:+44868272 | None:intergenic |
| ATCACTGGCCTTATAATGCT+TGG | 0.456299 | 1_3:-44872630 | Msa0120230:five_prime_UTR |
| AAATCATTCAAATAATGTAA+TGG | 0.460701 | 1_3:+44868008 | None:intergenic |
| GCTGATATCTACTGAAACAT+TGG | 0.460811 | 1_3:-44868114 | Msa0120230:three_prime_UTR |
| GTGGAGGAAGGTGTCGGCAG+TGG | 0.465414 | 1_3:+44872732 | None:intergenic |
| GGAGGGACAACGGCGGAGGA+AGG | 0.465841 | 1_3:+44872555 | None:intergenic |
| TGCCGCCGTTTGCATAGAAA+AGG | 0.468357 | 1_3:-44868649 | Msa0120230:CDS |
| GAGGAAGGTGTCGGCAGTGG+CGG | 0.468493 | 1_3:+44872735 | None:intergenic |
| TGGTCGACGGCGGTGGAGGA+AGG | 0.475890 | 1_3:+44872720 | None:intergenic |
| ATCTTGCTTATACTAAGATT+AGG | 0.477928 | 1_3:-44867981 | Msa0120230:three_prime_UTR |
| CGCGTCTGGCGGAGTGTGAG+AGG | 0.478316 | 1_3:+44872580 | None:intergenic |
| GGAGGAAGGGTCGCGTCTGG+CGG | 0.479219 | 1_3:+44872569 | None:intergenic |
| AAAAGGCATGCTACCTGCAT+TGG | 0.484600 | 1_3:+44868620 | None:intergenic |
| CCTCTTCTCTTCTCCTCCTA+CGG | 0.485202 | 1_3:-44872791 | Msa0120230:five_prime_UTR |
| TGCTCTCTTAGCTCGTGCAT+TGG | 0.485502 | 1_3:-44871748 | Msa0120230:CDS |
| GAAAAGTTGATGGTGGGTGG+TGG | 0.487320 | 1_3:+44872759 | None:intergenic |
| CTGGCCTTATAATGCTTGGC+TGG | 0.490541 | 1_3:-44872626 | Msa0120230:five_prime_UTR |
| GAGGGACAACGGCGGAGGAA+GGG | 0.493623 | 1_3:+44872556 | None:intergenic |
| TGCAGAGGTAAATGGGGAAA+AGG | 0.504606 | 1_3:+44868077 | None:intergenic |
| TGAACATATATTGCTTTGGA+AGG | 0.510167 | 1_3:-44872035 | Msa0120230:CDS |
| GAAAATGTACTTCGCATGCG+TGG | 0.516352 | 1_3:-44871789 | Msa0120230:CDS |
| AATTGCTTGAGAGATTCTTC+AGG | 0.520812 | 1_3:+44868709 | None:intergenic |
| ACATTGTAGATCCTGAGCTT+CGG | 0.521064 | 1_3:-44869653 | Msa0120230:CDS |
| TGTGCTGGAAGTTGCACGGG+CGG | 0.521372 | 1_3:+44871985 | None:intergenic |
| AAATCACATGGGGTGGAACA+TGG | 0.522520 | 1_3:+44868947 | None:intergenic |
| CAGTGGCGGAGAAAAGTTGA+TGG | 0.523602 | 1_3:+44872749 | None:intergenic |
| TTCCCCATTTACCTCTGCAG+TGG | 0.524545 | 1_3:-44868073 | Msa0120230:three_prime_UTR |
| ATATGTAAAAGCACTGGGAA+GGG | 0.526973 | 1_3:-44869034 | Msa0120230:CDS |
| GGAGGCATATGTAAAAGCAC+TGG | 0.528688 | 1_3:-44869040 | Msa0120230:CDS |
| GAAAAGGACAACACCAATGC+AGG | 0.529947 | 1_3:-44868633 | Msa0120230:intron |
| GCGAGGAGGGACAACGGCGG+AGG | 0.530361 | 1_3:+44872551 | None:intergenic |
| ATGGTGGGTGGTGGATTATG+AGG | 0.530861 | 1_3:+44872768 | None:intergenic |
| TCGATCAGCGTGCGCGAGGA+GGG | 0.538148 | 1_3:+44872538 | None:intergenic |
| GTATGTGGTTTGTAGACAAA+GGG | 0.538221 | 1_3:-44868356 | Msa0120230:intron |
| ATGTGGAAGAGAAGCAAAGG+AGG | 0.542602 | 1_3:-44869743 | Msa0120230:CDS |
| GCAGTGGTTGTTGCACGTGC+AGG | 0.542629 | 1_3:-44868057 | Msa0120230:three_prime_UTR |
| TGGAGTAACTGTCGGCTCAC+CGG | 0.547375 | 1_3:-44869926 | Msa0120230:intron |
| TATTAAAATGTAGTGGTGGT+AGG | 0.557186 | 1_3:+44869977 | None:intergenic |
| TATGTAAAAGCACTGGGAAG+GGG | 0.557410 | 1_3:-44869033 | Msa0120230:CDS |
| TATTAAATTATGGACTCTGA+AGG | 0.557965 | 1_3:-44869619 | Msa0120230:intron |
| TTTGTACACTTTACCTCATG+AGG | 0.558073 | 1_3:+44871855 | None:intergenic |
| ACTTCTTCTTTGATAGCATG+TGG | 0.558310 | 1_3:-44869946 | Msa0120230:CDS |
| ACTGTCAATACGCTGACGAT+CGG | 0.558418 | 1_3:-44870002 | Msa0120230:CDS |
| AAAATGTACTTCGCATGCGT+GGG | 0.567044 | 1_3:-44871788 | Msa0120230:CDS |
| CATATGTAAAAGCACTGGGA+AGG | 0.568391 | 1_3:-44869035 | Msa0120230:CDS |
| ACCTTAGAAATCACATGGGG+TGG | 0.569622 | 1_3:+44868940 | None:intergenic |
| ATCGATCAGCGTGCGCGAGG+AGG | 0.580276 | 1_3:+44872537 | None:intergenic |
| TTGATGTGGAAGAGAAGCAA+AGG | 0.580503 | 1_3:-44869746 | Msa0120230:CDS |
| AGACTCTGCGGAAGTCATTG+GGG | 0.585090 | 1_3:-44868265 | Msa0120230:CDS |
| GGAGAAAAGTTGATGGTGGG+TGG | 0.587354 | 1_3:+44872756 | None:intergenic |
| CGTTGAACTCATGCGTACTC+AGG | 0.587561 | 1_3:+44872083 | None:intergenic |
| GTGGATTATGAGGCCGTAGG+AGG | 0.587669 | 1_3:+44872778 | None:intergenic |
| AGAAGAGGAACGGTGGTCGA+CGG | 0.588229 | 1_3:+44872707 | None:intergenic |
| CGATTAAGAGACCATGTGAA+AGG | 0.589724 | 1_3:-44868976 | Msa0120230:CDS |
| GCTAGCATTTCTACTTCATG+TGG | 0.592831 | 1_3:+44869678 | None:intergenic |
| AGTAGACTAAAGTTGATCAC+TGG | 0.593473 | 1_3:-44872645 | Msa0120230:five_prime_UTR |
| ATTGTAGATTGGAATTGATG+TGG | 0.593603 | 1_3:-44869760 | Msa0120230:intron |
| ACGGCGGTGGAGGAAGGTGT+CGG | 0.595301 | 1_3:+44872726 | None:intergenic |
| AGAAAAGTATCGACGAGCAA+AGG | 0.602228 | 1_3:+44869701 | None:intergenic |
| CCGTAGGAGGAGAAGAGAAG+AGG | 0.607015 | 1_3:+44872791 | None:intergenic |
| AACATACCTTAGAAATCACA+TGG | 0.608184 | 1_3:+44868935 | None:intergenic |
| ATAGCATGTGGAGTAACTGT+CGG | 0.608997 | 1_3:-44869934 | Msa0120230:CDS |
| GGGGAGAAAGAGAAGAGGAA+CGG | 0.611048 | 1_3:+44872697 | None:intergenic |
| GCGTCTGGCGGAGTGTGAGA+GGG | 0.611330 | 1_3:+44872581 | None:intergenic |
| TGTACTTCGCATGCGTGGGG+AGG | 0.613246 | 1_3:-44871784 | Msa0120230:CDS |
| GAAATCGATCAGCGTGCGCG+AGG | 0.617089 | 1_3:+44872534 | None:intergenic |
| GGCGGAGAAAAGTTGATGGT+GGG | 0.618329 | 1_3:+44872753 | None:intergenic |
| CGGCAAACAGCATGATGCGG+TGG | 0.618400 | 1_3:+44872005 | None:intergenic |
| GACTCTGCGGAAGTCATTGG+GGG | 0.625402 | 1_3:-44868264 | Msa0120230:CDS |
| GGGCGGCAAACAGCATGATG+CGG | 0.629120 | 1_3:+44872002 | None:intergenic |
| GCGTGCGCGAGGAGGGACAA+CGG | 0.634436 | 1_3:+44872545 | None:intergenic |
| TCGCAGGGGAGAAAGAGAAG+AGG | 0.635135 | 1_3:+44872692 | None:intergenic |
| GAGGCATATGTAAAAGCACT+GGG | 0.640279 | 1_3:-44869039 | Msa0120230:CDS |
| CATGGATACCTCCTTTCACA+TGG | 0.640768 | 1_3:+44868965 | None:intergenic |
| AGATTCTTCAGGTCACCAGA+AGG | 0.645560 | 1_3:+44868720 | None:intergenic |
| TGGCGGAGAAAAGTTGATGG+TGG | 0.648658 | 1_3:+44872752 | None:intergenic |
| GAGAAAGAGAAGAGGAACGG+TGG | 0.649065 | 1_3:+44872700 | None:intergenic |
| AGAGGAACGGTGGTCGACGG+CGG | 0.649736 | 1_3:+44872710 | None:intergenic |
| TTAAGAGACCATGTGAAAGG+AGG | 0.657411 | 1_3:-44868973 | Msa0120230:CDS |
| AAATGTACTTCGCATGCGTG+GGG | 0.658909 | 1_3:-44871787 | Msa0120230:CDS |
| ACGTGCAACAACCACTGCAG+AGG | 0.662040 | 1_3:+44868062 | None:intergenic |
| TGTGAGATATTAAAATGTAG+TGG | 0.663065 | 1_3:+44869970 | None:intergenic |
| AACCACTGCAGAGGTAAATG+GGG | 0.668732 | 1_3:+44868071 | None:intergenic |
| GTGGTGGATTATGAGGCCGT+AGG | 0.673803 | 1_3:+44872775 | None:intergenic |
| GAGATATTAAAATGTAGTGG+TGG | 0.687442 | 1_3:+44869973 | None:intergenic |
| TGCGCGAGGAGGGACAACGG+CGG | 0.691239 | 1_3:+44872548 | None:intergenic |
| ACATACCTTAGAAATCACAT+GGG | 0.706017 | 1_3:+44868936 | None:intergenic |
| TATATGTTCATCATTAACAG+CGG | 0.715467 | 1_3:+44872048 | None:intergenic |
| GAACGATTATGGCAAACCTG+AGG | 0.715846 | 1_3:-44870155 | Msa0120230:intron |
| TATTTCCGGAACAGACTCTG+CGG | 0.745788 | 1_3:-44868277 | Msa0120230:CDS |
| CATACCTTAGAAATCACATG+GGG | 0.769679 | 1_3:+44868937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAACAAAAAAAAAGA+GGG | - | chr1_3:44868015-44868034 | Msa0120230:three_prime_UTR | 10.0% |
| !!! | TATAAGTAATTTTATTGTTT+CGG | - | chr1_3:44868228-44868247 | Msa0120230:exon | 10.0% |
| !! | CATAAAAAACAAAAAAAAAG+AGG | - | chr1_3:44868014-44868033 | Msa0120230:three_prime_UTR | 15.0% |
| !!! | GAATAATTGTAAGTTAATTT+TGG | - | chr1_3:44868172-44868191 | Msa0120230:three_prime_UTR | 15.0% |
| !! | TGTTACTATATTATTTGAAA+TGG | - | chr1_3:44869039-44869058 | Msa0120230:CDS | 15.0% |
| !! | CAAAAAATATTAGCAAAATT+TGG | + | chr1_3:44869722-44869741 | None:intergenic | 15.0% |
| !! | AATTATGTTAAAAGTTGTAA+AGG | + | chr1_3:44870308-44870327 | None:intergenic | 15.0% |
| !! | TAACAATATAAAATACATAC+CGG | + | chr1_3:44870779-44870798 | None:intergenic | 15.0% |
| !! | AAATCATTCAAATAATGTAA+TGG | + | chr1_3:44872678-44872697 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | + | chr1_3:44868431-44868450 | None:intergenic | 20.0% |
| !!! | ATTAAAATGTGCTTTTTATG+TGG | - | chr1_3:44868547-44868566 | Msa0120230:intron | 20.0% |
| !!! | TTTCAAAATATCGATTCAAT+AGG | + | chr1_3:44868854-44868873 | None:intergenic | 20.0% |
| !!! | TACTATATTATTTGAAATGG+AGG | - | chr1_3:44869042-44869061 | Msa0120230:CDS | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | - | chr1_3:44869414-44869433 | Msa0120230:intron | 20.0% |
| !! | AAAATTATAAAGTCTATGAG+AGG | + | chr1_3:44870206-44870225 | None:intergenic | 20.0% |
| !!! | TCTCATAGACTTTATAATTT+TGG | - | chr1_3:44870205-44870224 | Msa0120230:intron | 20.0% |
| !!! | CTCATAGACTTTATAATTTT+GGG | - | chr1_3:44870206-44870225 | Msa0120230:intron | 20.0% |
| !! | TTTAAGTAGCATATTTGAAT+AGG | - | chr1_3:44870655-44870674 | Msa0120230:intron | 20.0% |
| !!! | AGAAAATTTGAGTGTTTTTT+TGG | - | chr1_3:44871222-44871241 | Msa0120230:intron | 20.0% |
| !! | AATTACAATTATCATAAAGC+AGG | + | chr1_3:44871528-44871547 | None:intergenic | 20.0% |
| !! | ATTGTAATTATAATGTGACT+AGG | - | chr1_3:44871539-44871558 | Msa0120230:intron | 20.0% |
| !! | TTGTAATTATAATGTGACTA+GGG | - | chr1_3:44871540-44871559 | Msa0120230:intron | 20.0% |
| !! | TTAGTGATTCCATAATAAAA+TGG | - | chr1_3:44872467-44872486 | Msa0120230:intron | 20.0% |
| !!! | TTGAAACTTCCATTTTATTA+TGG | + | chr1_3:44872479-44872498 | None:intergenic | 20.0% |
| !!! | ATCTAAGACAGTATAAAAAA+TGG | + | chr1_3:44872549-44872568 | None:intergenic | 20.0% |
| !! | TGGATTATTACATTACAAAT+TGG | + | chr1_3:44872658-44872677 | None:intergenic | 20.0% |
| !!! | AGGGTTAAATTTATGTTTTA+TGG | + | chr1_3:44872795-44872814 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTATGTCGCA+GGG | + | chr1_3:44868009-44868028 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTTTATGTCGC+AGG | + | chr1_3:44868010-44868029 | None:intergenic | 25.0% |
| ! | GCATTGTTCTTATTATATCA+TGG | - | chr1_3:44868329-44868348 | Msa0120230:CDS | 25.0% |
| ! | TATATGTTCATCATTAACAG+CGG | + | chr1_3:44868638-44868657 | None:intergenic | 25.0% |
| ! | ATGATGAACATATATTGCTT+TGG | - | chr1_3:44868644-44868663 | Msa0120230:CDS | 25.0% |
| !! | GTTGTTGCTTGATATATATA+AGG | - | chr1_3:44868751-44868770 | Msa0120230:intron | 25.0% |
| ! | AGGTAAAACATACCAAAAAT+GGG | + | chr1_3:44868811-44868830 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr1_3:44869410-44869429 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTATTAGGA+AGG | - | chr1_3:44869418-44869437 | Msa0120230:intron | 25.0% |
| ! | AAATGAGTTAGAGAAAAACA+TGG | - | chr1_3:44869451-44869470 | Msa0120230:intron | 25.0% |
| ! | GACATTGATATAATAGTGTA+TGG | + | chr1_3:44869828-44869847 | None:intergenic | 25.0% |
| ! | AAACAACATCAACATGTTAT+GGG | + | chr1_3:44870245-44870264 | None:intergenic | 25.0% |
| ! | TGTTAAAAGTTGTAAAGGTA+AGG | + | chr1_3:44870303-44870322 | None:intergenic | 25.0% |
| ! | TGTGAGATATTAAAATGTAG+TGG | + | chr1_3:44870716-44870735 | None:intergenic | 25.0% |
| ! | GTCAGGAGTTTATTAAATTA+TGG | - | chr1_3:44871054-44871073 | Msa0120230:intron | 25.0% |
| ! | TATTAAATTATGGACTCTGA+AGG | - | chr1_3:44871064-44871083 | Msa0120230:intron | 25.0% |
| !! | TTGATTTTTACTACTCAGTT+AGG | - | chr1_3:44871122-44871141 | Msa0120230:intron | 25.0% |
| ! | TGTGATATAAAACTTCTCAA+TGG | - | chr1_3:44871325-44871344 | Msa0120230:intron | 25.0% |
| ! | GTGATATAAAACTTCTCAAT+GGG | - | chr1_3:44871326-44871345 | Msa0120230:intron | 25.0% |
| ! | AAATACTTCGCACAAAAATA+AGG | + | chr1_3:44871454-44871473 | None:intergenic | 25.0% |
| ! | TAGTAAGCATATATTTCCTT+TGG | - | chr1_3:44871496-44871515 | Msa0120230:intron | 25.0% |
| !!! | CGAATAGTGAAAGTATTAAA+AGG | + | chr1_3:44871689-44871708 | None:intergenic | 25.0% |
| ! | AGTTGGTTACATATTTATGT+TGG | - | chr1_3:44871779-44871798 | Msa0120230:CDS | 25.0% |
| !!! | TTTGTGCTTTTAGAGTTAAT+TGG | - | chr1_3:44872002-44872021 | Msa0120230:CDS | 25.0% |
| !! | ATAAGAGTATATTGCTGAAA+TGG | - | chr1_3:44872097-44872116 | Msa0120230:five_prime_UTR | 25.0% |
| !!! | CAATTGTTGAATCTTTTTTG+TGG | + | chr1_3:44872244-44872263 | None:intergenic | 25.0% |
| ! | TTCCAGTAAATCTGATTATA+CGG | - | chr1_3:44872354-44872373 | Msa0120230:intron | 25.0% |
| ! | TACATTCATCTTCAACAAAT+GGG | + | chr1_3:44872388-44872407 | None:intergenic | 25.0% |
| ! | ATACATTCATCTTCAACAAA+TGG | + | chr1_3:44872389-44872408 | None:intergenic | 25.0% |
| ! | ATCTTGCTTATACTAAGATT+AGG | - | chr1_3:44872702-44872721 | Msa0120230:five_prime_UTR | 25.0% |
| ! | ATAACATCGAATGCAAAAAA+AGG | + | chr1_3:44872763-44872782 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTTATGTCGCAG+GGG | + | chr1_3:44868008-44868027 | None:intergenic | 30.0% |
| ! | TGAACATATATTGCTTTGGA+AGG | - | chr1_3:44868648-44868667 | Msa0120230:CDS | 30.0% |
| GCATAAGTTACTTATCTTCT+AGG | - | chr1_3:44868729-44868748 | Msa0120230:CDS | 30.0% | |
| GAGGTAAAACATACCAAAAA+TGG | + | chr1_3:44868812-44868831 | None:intergenic | 30.0% | |
| ! | AGTACATTTTCTTTCTCACA+AGG | + | chr1_3:44868885-44868904 | None:intergenic | 30.0% |
| !! | TAAAGTACTGCTTAAGTTGA+AGG | - | chr1_3:44869091-44869110 | Msa0120230:intron | 30.0% |
| GTTGAAGGAAAAATGTTGTA+CGG | - | chr1_3:44869106-44869125 | Msa0120230:intron | 30.0% | |
| TTGAAGGAAAAATGTTGTAC+GGG | - | chr1_3:44869107-44869126 | Msa0120230:intron | 30.0% | |
| AGATGGTAGAAACTAGATTT+AGG | - | chr1_3:44869291-44869310 | Msa0120230:intron | 30.0% | |
| AAACTAGATTTAGGTGGTTT+AGG | - | chr1_3:44869300-44869319 | Msa0120230:intron | 30.0% | |
| ! | GAGAAAAACATGGTTTTTGA+TGG | - | chr1_3:44869461-44869480 | Msa0120230:intron | 30.0% |
| CTTCAGAAATAAAATCTGCT+TGG | + | chr1_3:44869576-44869595 | None:intergenic | 30.0% | |
| !!! | AGCCAGATTTTAGTATTGAT+TGG | - | chr1_3:44869632-44869651 | Msa0120230:CDS | 30.0% |
| GTCCAATCAATACTAAAATC+TGG | + | chr1_3:44869637-44869656 | None:intergenic | 30.0% | |
| TTTCCTGTAATCTGTTGTAT+TGG | + | chr1_3:44869967-44869986 | None:intergenic | 30.0% | |
| ATTATAAAGTCTATGAGAGG+AGG | + | chr1_3:44870203-44870222 | None:intergenic | 30.0% | |
| GAAACAACATCAACATGTTA+TGG | + | chr1_3:44870246-44870265 | None:intergenic | 30.0% | |
| AAGGAGTTACATAATGTGAT+TGG | + | chr1_3:44870284-44870303 | None:intergenic | 30.0% | |
| GTTCATGTTCTTGTATCATT+TGG | - | chr1_3:44870398-44870417 | Msa0120230:intron | 30.0% | |
| GATCAATTTGACAATTTGTC+TGG | + | chr1_3:44870486-44870505 | None:intergenic | 30.0% | |
| ATCCAAAATCCTTGAAGTTT+AGG | - | chr1_3:44870503-44870522 | Msa0120230:intron | 30.0% | |
| ! | TTCCTAAACTTCAAGGATTT+TGG | + | chr1_3:44870508-44870527 | None:intergenic | 30.0% |
| AAGTTTAGGAAGAACGATTA+TGG | - | chr1_3:44870517-44870536 | Msa0120230:intron | 30.0% | |
| TATTAAAATGTAGTGGTGGT+AGG | + | chr1_3:44870709-44870728 | None:intergenic | 30.0% | |
| GAGATATTAAAATGTAGTGG+TGG | + | chr1_3:44870713-44870732 | None:intergenic | 30.0% | |
| ! | CTTGTGTTTTCATTGTAGAT+TGG | - | chr1_3:44870912-44870931 | Msa0120230:intron | 30.0% |
| ATTGTAGATTGGAATTGATG+TGG | - | chr1_3:44870923-44870942 | Msa0120230:intron | 30.0% | |
| ATAAAACTTCTCAATGGGTA+AGG | - | chr1_3:44871331-44871350 | Msa0120230:intron | 30.0% | |
| CAGAATAGGAAGAAAAAGAA+TGG | + | chr1_3:44871590-44871609 | None:intergenic | 30.0% | |
| TTACATATGCCTCCTATAAA+TGG | + | chr1_3:44871637-44871656 | None:intergenic | 30.0% | |
| ACATACCTTAGAAATCACAT+GGG | + | chr1_3:44871750-44871769 | None:intergenic | 30.0% | |
| AACATACCTTAGAAATCACA+TGG | + | chr1_3:44871751-44871770 | None:intergenic | 30.0% | |
| ! | TATTTATGTTGGTGAACTAC+TGG | - | chr1_3:44871790-44871809 | Msa0120230:CDS | 30.0% |
| ! | ATTTATGTTGGTGAACTACT+GGG | - | chr1_3:44871791-44871810 | Msa0120230:CDS | 30.0% |
| ACAAAATCAAATAACTCGCA+TGG | + | chr1_3:44871894-44871913 | None:intergenic | 30.0% | |
| TCTTATGACGACAAAAGAAA+AGG | + | chr1_3:44872083-44872102 | None:intergenic | 30.0% | |
| CCAGAAAATAGTTTAACATG+TGG | + | chr1_3:44872163-44872182 | None:intergenic | 30.0% | |
| ! | CCACATGTTAAACTATTTTC+TGG | - | chr1_3:44872160-44872179 | Msa0120230:intron | 30.0% |
| TTCCGTATAATCAGATTTAC+TGG | + | chr1_3:44872359-44872378 | None:intergenic | 30.0% | |
| GTTGAAGATGAATGTATTTC+CGG | - | chr1_3:44872392-44872411 | Msa0120230:intron | 30.0% | |
| ! | AGTAGACTAAAGTTGATCAC+TGG | - | chr1_3:44868038-44868057 | Msa0120230:three_prime_UTR | 35.0% |
| AATACCAGCCAAGCATTATA+AGG | + | chr1_3:44868064-44868083 | None:intergenic | 35.0% | |
| AAGTCAGTATCTATGAAGCA+CGG | - | chr1_3:44868353-44868372 | Msa0120230:intron | 35.0% | |
| TCTCAAATAATTAGCGGTGT+CGG | + | chr1_3:44868425-44868444 | None:intergenic | 35.0% | |
| ATCATACCTAGCACAAAGTA+AGG | + | chr1_3:44868575-44868594 | None:intergenic | 35.0% | |
| ACTTTGTGCTAGGTATGATT+TGG | - | chr1_3:44868576-44868595 | Msa0120230:intron | 35.0% | |
| TATCTTGTATGTTGCAATGC+AGG | - | chr1_3:44868781-44868800 | Msa0120230:intron | 35.0% | |
| ATCTTGTATGTTGCAATGCA+GGG | - | chr1_3:44868782-44868801 | Msa0120230:intron | 35.0% | |
| ! | TTGGTATGTTTTACCTCATG+AGG | - | chr1_3:44868815-44868834 | Msa0120230:intron | 35.0% |
| TTTGTACACTTTACCTCATG+AGG | + | chr1_3:44868831-44868850 | None:intergenic | 35.0% | |
| TGGTAGAAACTAGATTTAGG+TGG | - | chr1_3:44869294-44869313 | Msa0120230:intron | 35.0% | |
| GACCTATGGATTCTTTAGTA+AGG | - | chr1_3:44869336-44869355 | Msa0120230:intron | 35.0% | |
| CTCCTTACTAAAGAATCCAT+AGG | + | chr1_3:44869341-44869360 | None:intergenic | 35.0% | |
| AAGGAGAGTAGATCAAATGA+AGG | - | chr1_3:44869355-44869374 | Msa0120230:intron | 35.0% | |
| ! | TGGTTTTTGATGGAACACTA+TGG | - | chr1_3:44869471-44869490 | Msa0120230:intron | 35.0% |
| ! | TAAACGAAACCACACGTTTT+TGG | + | chr1_3:44869659-44869678 | None:intergenic | 35.0% |
| GAACCAATACAACAGATTAC+AGG | - | chr1_3:44869961-44869980 | Msa0120230:CDS | 35.0% | |
| GAATGAAAATACGACCCAAT+AGG | - | chr1_3:44869988-44870007 | Msa0120230:CDS | 35.0% | |
| GCATTCTCGAATTTCCTATT+GGG | + | chr1_3:44870005-44870024 | None:intergenic | 35.0% | |
| !!! | GACTTTATAATTTTGGGACC+TGG | - | chr1_3:44870212-44870231 | Msa0120230:intron | 35.0% |
| !!! | ATGTTGTTTCCCTTTTCTTC+TGG | - | chr1_3:44870256-44870275 | Msa0120230:intron | 35.0% |
| ! | TGATTGGTTCCAGAAGAAAA+GGG | + | chr1_3:44870268-44870287 | None:intergenic | 35.0% |
| ATACATATAGCCTGCTTGTT+TGG | - | chr1_3:44870351-44870370 | Msa0120230:intron | 35.0% | |
| TTCTTTCTATATCGCAACAG+AGG | - | chr1_3:44870427-44870446 | Msa0120230:intron | 35.0% | |
| ATCGTTCTTCCTAAACTTCA+AGG | + | chr1_3:44870515-44870534 | None:intergenic | 35.0% | |
| AGAATAGAAAAACACACCTC+AGG | + | chr1_3:44870547-44870566 | None:intergenic | 35.0% | |
| ! | ACTTCTTCTTTGATAGCATG+TGG | - | chr1_3:44870737-44870756 | Msa0120230:intron | 35.0% |
| CTGACAAAAAAGAGTCAAGT+TGG | + | chr1_3:44871168-44871187 | None:intergenic | 35.0% | |
| TGACTCATTGAACTACTAAC+TGG | - | chr1_3:44871199-44871218 | Msa0120230:intron | 35.0% | |
| !! | TTGTTAGCTCTAGTCTTTAG+TGG | - | chr1_3:44871406-44871425 | Msa0120230:intron | 35.0% |
| ATAAAGCAGGTAAGTACCAA+AGG | + | chr1_3:44871515-44871534 | None:intergenic | 35.0% | |
| ! | CAGAGACATTTGCCATTTAT+AGG | - | chr1_3:44871622-44871641 | Msa0120230:intron | 35.0% |
| ! | AGACATTTGCCATTTATAGG+AGG | - | chr1_3:44871625-44871644 | Msa0120230:intron | 35.0% |
| !! | ATATGTAAAAGCACTGGGAA+GGG | - | chr1_3:44871649-44871668 | Msa0120230:intron | 35.0% |
| CATACCTTAGAAATCACATG+GGG | + | chr1_3:44871749-44871768 | None:intergenic | 35.0% | |
| AGGTATGTTTCTTGCAAAGT+TGG | - | chr1_3:44871762-44871781 | Msa0120230:CDS | 35.0% | |
| ! | TTTATGTTGGTGAACTACTG+GGG | - | chr1_3:44871792-44871811 | Msa0120230:CDS | 35.0% |
| GATTTCAGCCCGAATATTTA+GGG | + | chr1_3:44871840-44871859 | None:intergenic | 35.0% | |
| !!! | CAAGAGTTTATTTTGCTGAC+AGG | - | chr1_3:44871920-44871939 | Msa0120230:intron | 35.0% |
| AATTGCTTGAGAGATTCTTC+AGG | + | chr1_3:44871977-44871996 | None:intergenic | 35.0% | |
| TGAAGAATCTCTCAAGCAAT+TGG | - | chr1_3:44871976-44871995 | Msa0120230:intron | 35.0% | |
| ! | GTTGTCCTTTTCTATGCAAA+CGG | + | chr1_3:44872042-44872061 | None:intergenic | 35.0% |
| AAATGCAGCAACAATTGTTG+TGG | - | chr1_3:44872188-44872207 | Msa0120230:intron | 35.0% | |
| GCAATTTGAGTAGCTGATAA+TGG | - | chr1_3:44872299-44872318 | Msa0120230:intron | 35.0% | |
| ! | TGTATGTGGTTTGTAGACAA+AGG | - | chr1_3:44872326-44872345 | Msa0120230:intron | 35.0% |
| ! | GTATGTGGTTTGTAGACAAA+GGG | - | chr1_3:44872327-44872346 | Msa0120230:intron | 35.0% |
| GCTGATATCTACTGAAACAT+TGG | - | chr1_3:44872569-44872588 | Msa0120230:five_prime_UTR | 35.0% | |
| !! | ATCACTGGCCTTATAATGCT+TGG | - | chr1_3:44868053-44868072 | Msa0120230:three_prime_UTR | 40.0% |
| AGTATCTATGAAGCACGGAT+AGG | - | chr1_3:44868358-44868377 | Msa0120230:intron | 40.0% | |
| GTATCTATGAAGCACGGATA+GGG | - | chr1_3:44868359-44868378 | Msa0120230:intron | 40.0% | |
| CAACTTCCAGCACAAAAGTA+TGG | - | chr1_3:44868707-44868726 | Msa0120230:CDS | 40.0% | |
| ! | CTTATGCCATACTTTTGTGC+TGG | + | chr1_3:44868716-44868735 | None:intergenic | 40.0% |
| AAAATGTACTTCGCATGCGT+GGG | - | chr1_3:44868895-44868914 | Msa0120230:intron | 40.0% | |
| CGCTTACTTTATGTTGGTGT+TGG | + | chr1_3:44869156-44869175 | None:intergenic | 40.0% | |
| ACACCAACATAAAGTAAGCG+TGG | - | chr1_3:44869156-44869175 | Msa0120230:intron | 40.0% | |
| CAGATATGAGGATGTTGTGT+TGG | - | chr1_3:44869179-44869198 | Msa0120230:intron | 40.0% | |
| ! | TCTACCATCTTTTCTCGTGT+AGG | + | chr1_3:44869281-44869300 | None:intergenic | 40.0% |
| GAATCAGATCAAGAGAGGTA+GGG | - | chr1_3:44869379-44869398 | Msa0120230:intron | 40.0% | |
| AATCAGATCAAGAGAGGTAG+GGG | - | chr1_3:44869380-44869399 | Msa0120230:intron | 40.0% | |
| ! | AAGTCTTTTCCCACTAAGTG+GGG | + | chr1_3:44869520-44869539 | None:intergenic | 40.0% |
| ! | CAAGTCTTTTCCCACTAAGT+GGG | + | chr1_3:44869521-44869540 | None:intergenic | 40.0% |
| TTGATTGGACCAAAAACGTG+TGG | - | chr1_3:44869647-44869666 | Msa0120230:CDS | 40.0% | |
| AAACGTGTGGTTTCGTTTAG+TGG | - | chr1_3:44869660-44869679 | Msa0120230:CDS | 40.0% | |
| TCATAGCAACTAGCGAGATT+TGG | - | chr1_3:44869692-44869711 | Msa0120230:CDS | 40.0% | |
| !!! | ATCGGTGTTGTTTTGAGCAT+TGG | - | chr1_3:44869785-44869804 | Msa0120230:intron | 40.0% |
| AATTTGTGTGCGAGACTTTC+TGG | + | chr1_3:44869890-44869909 | None:intergenic | 40.0% | |
| GAAAGTCTCGCACACAAATT+AGG | - | chr1_3:44869890-44869909 | Msa0120230:intron | 40.0% | |
| GGCATTCTCGAATTTCCTAT+TGG | + | chr1_3:44870006-44870025 | None:intergenic | 40.0% | |
| ! | AGTTACACTTGCAAGAGCAT+AGG | + | chr1_3:44870027-44870046 | None:intergenic | 40.0% |
| TCACTGTGGAGAAGGATAAA+GGG | + | chr1_3:44870063-44870082 | None:intergenic | 40.0% | |
| TATTTGAGTCACTGTGGAGA+AGG | + | chr1_3:44870071-44870090 | None:intergenic | 40.0% | |
| TGCTTGATCAAAACTCCCAA+GGG | + | chr1_3:44870164-44870183 | None:intergenic | 40.0% | |
| ! | GTGATTGGTTCCAGAAGAAA+AGG | + | chr1_3:44870269-44870288 | None:intergenic | 40.0% |
| ATAGCATGTGGAGTAACTGT+CGG | - | chr1_3:44870749-44870768 | Msa0120230:intron | 40.0% | |
| TTGATGTGGAAGAGAAGCAA+AGG | - | chr1_3:44870937-44870956 | Msa0120230:intron | 40.0% | |
| !! | AGAAAAGTATCGACGAGCAA+AGG | + | chr1_3:44870985-44871004 | None:intergenic | 40.0% |
| GCTAGCATTTCTACTTCATG+TGG | + | chr1_3:44871008-44871027 | None:intergenic | 40.0% | |
| ACATTGTAGATCCTGAGCTT+CGG | - | chr1_3:44871030-44871049 | Msa0120230:intron | 40.0% | |
| ATTGAATTTCGCTGCGCTAT+TGG | - | chr1_3:44871098-44871117 | Msa0120230:intron | 40.0% | |
| TTGAATTTCGCTGCGCTATT+GGG | - | chr1_3:44871099-44871118 | Msa0120230:intron | 40.0% | |
| ACTCAGTTAGGATTGAGAGT+TGG | - | chr1_3:44871134-44871153 | Msa0120230:intron | 40.0% | |
| CTCAGTTAGGATTGAGAGTT+GGG | - | chr1_3:44871135-44871154 | Msa0120230:intron | 40.0% | |
| TGTAAGTGAAGCTGCAGAAT+AGG | + | chr1_3:44871604-44871623 | None:intergenic | 40.0% | |
| !! | GAGGCATATGTAAAAGCACT+GGG | - | chr1_3:44871644-44871663 | Msa0120230:intron | 40.0% |
| !! | CATATGTAAAAGCACTGGGA+AGG | - | chr1_3:44871648-44871667 | Msa0120230:intron | 40.0% |
| !! | TATGTAAAAGCACTGGGAAG+GGG | - | chr1_3:44871650-44871669 | Msa0120230:intron | 40.0% |
| CGATTAAGAGACCATGTGAA+AGG | - | chr1_3:44871707-44871726 | Msa0120230:intron | 40.0% | |
| TTAAGAGACCATGTGAAAGG+AGG | - | chr1_3:44871710-44871729 | Msa0120230:intron | 40.0% | |
| CGATTTCAGCCCGAATATTT+AGG | + | chr1_3:44871841-44871860 | None:intergenic | 40.0% | |
| GAAATTACTGTTGAGCCTTC+TGG | - | chr1_3:44871948-44871967 | Msa0120230:intron | 40.0% | |
| TTCATAACTGCACATGCTGT+CGG | - | chr1_3:44872135-44872154 | Msa0120230:intron | 40.0% | |
| !! | CTGATAATGGCTCATGTATG+TGG | - | chr1_3:44872312-44872331 | Msa0120230:intron | 40.0% |
| ATCAGTGTACGTGTCGTGTA+CGG | + | chr1_3:44868401-44868420 | None:intergenic | 45.0% | |
| ! | TATATGCGTCGATGTCGTGT+TGG | - | chr1_3:44868467-44868486 | Msa0120230:intron | 45.0% |
| ! | TTTTGTGCTGGAAGTTGCAC+GGG | + | chr1_3:44868704-44868723 | None:intergenic | 45.0% |
| ! | CTTTTGTGCTGGAAGTTGCA+CGG | + | chr1_3:44868705-44868724 | None:intergenic | 45.0% |
| ! | AATGCAGGGAAGCCCATTTT+TGG | - | chr1_3:44868796-44868815 | Msa0120230:intron | 45.0% |
| GAAAATGTACTTCGCATGCG+TGG | - | chr1_3:44868894-44868913 | Msa0120230:intron | 45.0% | |
| AAATGTACTTCGCATGCGTG+GGG | - | chr1_3:44868896-44868915 | Msa0120230:intron | 45.0% | |
| !!! | GAGCTAAGAGAGCACTTTTC+TGG | + | chr1_3:44868929-44868948 | None:intergenic | 45.0% |
| !! | TTGAAATGGAGGAGTGTCTC+AGG | - | chr1_3:44869053-44869072 | Msa0120230:intron | 45.0% |
| TGTTGTACGGGATAGAGTGT+CGG | - | chr1_3:44869119-44869138 | Msa0120230:intron | 45.0% | |
| CTGCCACGCTTACTTTATGT+TGG | + | chr1_3:44869162-44869181 | None:intergenic | 45.0% | |
| AAGTAAGCGTGGCAGATATG+AGG | - | chr1_3:44869167-44869186 | Msa0120230:intron | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | - | chr1_3:44869187-44869206 | Msa0120230:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGTT+GGG | - | chr1_3:44869249-44869268 | Msa0120230:intron | 45.0% | |
| AGCACCTACACGAGAAAAGA+TGG | - | chr1_3:44869274-44869293 | Msa0120230:intron | 45.0% | |
| AAGGCGAATCAGATCAAGAG+AGG | - | chr1_3:44869374-44869393 | Msa0120230:intron | 45.0% | |
| CGAATCAGATCAAGAGAGGT+AGG | - | chr1_3:44869378-44869397 | Msa0120230:intron | 45.0% | |
| ! | CCAAGTCTTTTCCCACTAAG+TGG | + | chr1_3:44869522-44869541 | None:intergenic | 45.0% |
| CCACTTAGTGGGAAAAGACT+TGG | - | chr1_3:44869519-44869538 | Msa0120230:intron | 45.0% | |
| ATCAATGTCCTGTACCTCAG+TGG | - | chr1_3:44869839-44869858 | Msa0120230:intron | 45.0% | |
| GTCACTGTGGAGAAGGATAA+AGG | + | chr1_3:44870064-44870083 | None:intergenic | 45.0% | |
| CAGTTGAGAGAGCGATTACA+GGG | + | chr1_3:44870111-44870130 | None:intergenic | 45.0% | |
| GGAGTTACAACTTTATGCCG+AGG | + | chr1_3:44870137-44870156 | None:intergenic | 45.0% | |
| AGTTGTAACTCCTATCCCCT+TGG | - | chr1_3:44870145-44870164 | Msa0120230:intron | 45.0% | |
| GTTGTAACTCCTATCCCCTT+GGG | - | chr1_3:44870146-44870165 | Msa0120230:intron | 45.0% | |
| ATCAAAACTCCCAAGGGGAT+AGG | + | chr1_3:44870158-44870177 | None:intergenic | 45.0% | |
| GCTTGATCAAAACTCCCAAG+GGG | + | chr1_3:44870163-44870182 | None:intergenic | 45.0% | |
| GTGCTTGATCAAAACTCCCA+AGG | + | chr1_3:44870165-44870184 | None:intergenic | 45.0% | |
| !!! | TAATTTTGGGACCTGGTCTC+AGG | - | chr1_3:44870219-44870238 | Msa0120230:intron | 45.0% |
| CATATAGCCTGCTTGTTTGG+TGG | - | chr1_3:44870354-44870373 | Msa0120230:intron | 45.0% | |
| AGATGTTCCACCAAACAAGC+AGG | + | chr1_3:44870364-44870383 | None:intergenic | 45.0% | |
| GAACGATTATGGCAAACCTG+AGG | - | chr1_3:44870528-44870547 | Msa0120230:intron | 45.0% | |
| ACTGTCAATACGCTGACGAT+CGG | - | chr1_3:44870681-44870700 | Msa0120230:intron | 45.0% | |
| ! | CAGAGACAATAGTCTTGAGC+AGG | + | chr1_3:44870881-44870900 | None:intergenic | 45.0% |
| ATGTGGAAGAGAAGCAAAGG+AGG | - | chr1_3:44870940-44870959 | Msa0120230:intron | 45.0% | |
| ! | TGTGACTAGGGAGCATAAGT+AGG | - | chr1_3:44871552-44871571 | Msa0120230:intron | 45.0% |
| ! | GGAGGCATATGTAAAAGCAC+TGG | - | chr1_3:44871643-44871662 | Msa0120230:intron | 45.0% |
| CATGGATACCTCCTTTCACA+TGG | + | chr1_3:44871721-44871740 | None:intergenic | 45.0% | |
| AAATCACATGGGGTGGAACA+TGG | + | chr1_3:44871739-44871758 | None:intergenic | 45.0% | |
| TCCACCCCATGTGATTTCTA+AGG | - | chr1_3:44871742-44871761 | Msa0120230:CDS | 45.0% | |
| ACCTTAGAAATCACATGGGG+TGG | + | chr1_3:44871746-44871765 | None:intergenic | 45.0% | |
| ACGGGCATGCCCTAAATATT+CGG | - | chr1_3:44871828-44871847 | Msa0120230:CDS | 45.0% | |
| ACTCGCATGGTACTAACACA+AGG | + | chr1_3:44871881-44871900 | None:intergenic | 45.0% | |
| AGATTCTTCAGGTCACCAGA+AGG | + | chr1_3:44871966-44871985 | None:intergenic | 45.0% | |
| ! | GTCCTTTTCTATGCAAACGG+CGG | + | chr1_3:44872039-44872058 | None:intergenic | 45.0% |
| GAAAAGGACAACACCAATGC+AGG | - | chr1_3:44872050-44872069 | Msa0120230:CDS | 45.0% | |
| ! | AAAAGGCATGCTACCTGCAT+TGG | + | chr1_3:44872066-44872085 | None:intergenic | 45.0% |
| TATTTCCGGAACAGACTCTG+CGG | - | chr1_3:44872406-44872425 | Msa0120230:intron | 45.0% | |
| TGCAGAGGTAAATGGGGAAA+AGG | + | chr1_3:44872609-44872628 | None:intergenic | 45.0% | |
| AACCACTGCAGAGGTAAATG+GGG | + | chr1_3:44872615-44872634 | None:intergenic | 45.0% | |
| CAACCACTGCAGAGGTAAAT+GGG | + | chr1_3:44872616-44872635 | None:intergenic | 45.0% | |
| ACAACCACTGCAGAGGTAAA+TGG | + | chr1_3:44872617-44872636 | None:intergenic | 45.0% | |
| !!! | TTTTTTATTTTTTTTGTAAT+CGG | - | chr1_3:44869767-44869786 | Msa0120230:intron | 5.0% |
| CCTCTTCTCTTCTCCTCCTA+CGG | - | chr1_3:44867892-44867911 | Msa0120230:three_prime_UTR | 50.0% | |
| !! | ATGGTGGGTGGTGGATTATG+AGG | + | chr1_3:44867918-44867937 | None:intergenic | 50.0% |
| !! | GAAAAGTTGATGGTGGGTGG+TGG | + | chr1_3:44867927-44867946 | None:intergenic | 50.0% |
| !! | GGAGAAAAGTTGATGGTGGG+TGG | + | chr1_3:44867930-44867949 | None:intergenic | 50.0% |
| !! | GGCGGAGAAAAGTTGATGGT+GGG | + | chr1_3:44867933-44867952 | None:intergenic | 50.0% |
| !! | TGGCGGAGAAAAGTTGATGG+TGG | + | chr1_3:44867934-44867953 | None:intergenic | 50.0% |
| ! | CAGTGGCGGAGAAAAGTTGA+TGG | + | chr1_3:44867937-44867956 | None:intergenic | 50.0% |
| GAGAAAGAGAAGAGGAACGG+TGG | + | chr1_3:44867986-44868005 | None:intergenic | 50.0% | |
| GGGGAGAAAGAGAAGAGGAA+CGG | + | chr1_3:44867989-44868008 | None:intergenic | 50.0% | |
| !! | CTGGCCTTATAATGCTTGGC+TGG | - | chr1_3:44868057-44868076 | Msa0120230:three_prime_UTR | 50.0% |
| ACGGATAGGGACACTGGATA+CGG | - | chr1_3:44868372-44868391 | Msa0120230:intron | 50.0% | |
| TTATGAAGCACGACGCTCCT+CGG | + | chr1_3:44868517-44868536 | None:intergenic | 50.0% | |
| GTGGTGCCTTACTTTGTGCT+AGG | - | chr1_3:44868566-44868585 | Msa0120230:intron | 50.0% | |
| CGTTGAACTCATGCGTACTC+AGG | + | chr1_3:44868603-44868622 | None:intergenic | 50.0% | |
| TGCTCTCTTAGCTCGTGCAT+TGG | - | chr1_3:44868935-44868954 | Msa0120230:intron | 50.0% | |
| ! | GTTGTACGGGATAGAGTGTC+GGG | - | chr1_3:44869120-44869139 | Msa0120230:intron | 50.0% |
| GGATGTGTGGCAAGACTAGA+CGG | - | chr1_3:44869200-44869219 | Msa0120230:intron | 50.0% | |
| GATGTGTGGCAAGACTAGAC+GGG | - | chr1_3:44869201-44869220 | Msa0120230:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+TGG | - | chr1_3:44869248-44869267 | Msa0120230:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | - | chr1_3:44869250-44869269 | Msa0120230:intron | 50.0% | |
| GGTGGTTTAGGCATGTAGAG+AGG | - | chr1_3:44869312-44869331 | Msa0120230:intron | 50.0% | |
| GCATGTAGAGAGGTGACCTA+TGG | - | chr1_3:44869322-44869341 | Msa0120230:intron | 50.0% | |
| ! | CTTTTCCCACTAAGTGGGGT+CGG | + | chr1_3:44869516-44869535 | None:intergenic | 50.0% |
| CACAATTGCCACTGAGGTAC+AGG | + | chr1_3:44869850-44869869 | None:intergenic | 50.0% | |
| GTACCTCAGTGGCAATTGTG+AGG | - | chr1_3:44869850-44869869 | Msa0120230:intron | 50.0% | |
| GATCCTCACAATTGCCACTG+AGG | + | chr1_3:44869856-44869875 | None:intergenic | 50.0% | |
| ! | GTGCGAGACTTTCTGGTATC+TGG | + | chr1_3:44869883-44869902 | None:intergenic | 50.0% |
| TGTGGAGAAGGATAAAGGGC+GGG | + | chr1_3:44870059-44870078 | None:intergenic | 50.0% | |
| CTGTGGAGAAGGATAAAGGG+CGG | + | chr1_3:44870060-44870079 | None:intergenic | 50.0% | |
| GGGGGTTATTTGAGTCACTG+TGG | + | chr1_3:44870077-44870096 | None:intergenic | 50.0% | |
| TGAGAGAGCGATTACAGGGA+GGG | + | chr1_3:44870107-44870126 | None:intergenic | 50.0% | |
| TTGAGAGAGCGATTACAGGG+AGG | + | chr1_3:44870108-44870127 | None:intergenic | 50.0% | |
| GCAGTTGAGAGAGCGATTAC+AGG | + | chr1_3:44870112-44870131 | None:intergenic | 50.0% | |
| ! | ATGTTGGTGAACTACTGGGG+TGG | - | chr1_3:44871795-44871814 | Msa0120230:CDS | 50.0% |
| CGGGCATGCCCTAAATATTC+GGG | - | chr1_3:44871829-44871848 | Msa0120230:CDS | 50.0% | |
| TGCCGCCGTTTGCATAGAAA+AGG | - | chr1_3:44872034-44872053 | Msa0120230:CDS | 50.0% | |
| ACAGACTCTGCGGAAGTCAT+TGG | - | chr1_3:44872416-44872435 | Msa0120230:intron | 50.0% | |
| CAGACTCTGCGGAAGTCATT+GGG | - | chr1_3:44872417-44872436 | Msa0120230:intron | 50.0% | |
| AGACTCTGCGGAAGTCATTG+GGG | - | chr1_3:44872418-44872437 | Msa0120230:intron | 50.0% | |
| TTCCCCATTTACCTCTGCAG+TGG | - | chr1_3:44872610-44872629 | Msa0120230:five_prime_UTR | 50.0% | |
| CCGTAGGAGGAGAAGAGAAG+AGG | + | chr1_3:44867895-44867914 | None:intergenic | 55.0% | |
| ! | GTGGATTATGAGGCCGTAGG+AGG | + | chr1_3:44867908-44867927 | None:intergenic | 55.0% |
| !! | GTGGTGGATTATGAGGCCGT+AGG | + | chr1_3:44867911-44867930 | None:intergenic | 55.0% |
| AGAAGAGGAACGGTGGTCGA+CGG | + | chr1_3:44867979-44867998 | None:intergenic | 55.0% | |
| TCGCAGGGGAGAAAGAGAAG+AGG | + | chr1_3:44867994-44868013 | None:intergenic | 55.0% | |
| TGAAGCACGGATAGGGACAC+TGG | - | chr1_3:44868366-44868385 | Msa0120230:intron | 55.0% | |
| ! | ATGCGTCGATGTCGTGTTGG+TGG | - | chr1_3:44868470-44868489 | Msa0120230:intron | 55.0% |
| CACGTGACATACCTGATCCG+AGG | - | chr1_3:44868497-44868516 | Msa0120230:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_3:44869507-44869526 | Msa0120230:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_3:44869508-44869527 | Msa0120230:intron | 55.0% | |
| ATTACAGGGAGGGCAGAGTG+GGG | + | chr1_3:44870097-44870116 | None:intergenic | 55.0% | |
| GATTACAGGGAGGGCAGAGT+GGG | + | chr1_3:44870098-44870117 | None:intergenic | 55.0% | |
| CGCTCTCTCAACTGCTTCCT+CGG | - | chr1_3:44870117-44870136 | Msa0120230:intron | 55.0% | |
| CATGTTATGGGCCTGAGACC+AGG | + | chr1_3:44870233-44870252 | None:intergenic | 55.0% | |
| !! | TGGAGTAACTGTCGGCTCAC+CGG | - | chr1_3:44870757-44870776 | Msa0120230:intron | 55.0% |
| CTGGGGTGGCTACTGTCATA+CGG | - | chr1_3:44871809-44871828 | Msa0120230:CDS | 55.0% | |
| TGGGGTGGCTACTGTCATAC+GGG | - | chr1_3:44871810-44871829 | Msa0120230:CDS | 55.0% | |
| GACTTCCGCAGAGTCTGTTC+CGG | + | chr1_3:44872414-44872433 | None:intergenic | 55.0% | |
| GACTCTGCGGAAGTCATTGG+GGG | - | chr1_3:44872419-44872438 | Msa0120230:intron | 55.0% | |
| ACGTGCAACAACCACTGCAG+AGG | + | chr1_3:44872624-44872643 | None:intergenic | 55.0% | |
| GAAATCGATCAGCGTGCGCG+AGG | + | chr1_3:44868152-44868171 | None:intergenic | 60.0% | |
| ! | CGTCGATGTCGTGTTGGTGG+CGG | - | chr1_3:44868473-44868492 | Msa0120230:intron | 60.0% |
| CGGCAAACAGCATGATGCGG+TGG | + | chr1_3:44868681-44868700 | None:intergenic | 60.0% | |
| GGGCGGCAAACAGCATGATG+CGG | + | chr1_3:44868684-44868703 | None:intergenic | 60.0% | |
| TGTGCTGGAAGTTGCACGGG+CGG | + | chr1_3:44868701-44868720 | None:intergenic | 60.0% | |
| TGTACTTCGCATGCGTGGGG+AGG | - | chr1_3:44868899-44868918 | Msa0120230:intron | 60.0% | |
| !! | GTACGGGATAGAGTGTCGGG+CGG | - | chr1_3:44869123-44869142 | Msa0120230:intron | 60.0% |
| GAGAAGGATAAAGGGCGGGC+TGG | + | chr1_3:44870055-44870074 | None:intergenic | 60.0% | |
| TTACAGGGAGGGCAGAGTGG+GGG | + | chr1_3:44870096-44870115 | None:intergenic | 60.0% | |
| CGATTACAGGGAGGGCAGAG+TGG | + | chr1_3:44870099-44870118 | None:intergenic | 60.0% | |
| AGATCCTGAGCTTCGGCGTC+AGG | - | chr1_3:44871037-44871056 | Msa0120230:intron | 60.0% | |
| AACTCCTGACGCCGAAGCTC+AGG | + | chr1_3:44871044-44871063 | None:intergenic | 60.0% | |
| GCAGTGGTTGTTGCACGTGC+AGG | - | chr1_3:44872626-44872645 | Msa0120230:five_prime_UTR | 60.0% | |
| !! | GAGGAAGGTGTCGGCAGTGG+CGG | + | chr1_3:44867951-44867970 | None:intergenic | 65.0% |
| !! | GTGGAGGAAGGTGTCGGCAG+TGG | + | chr1_3:44867954-44867973 | None:intergenic | 65.0% |
| ! | ACGGCGGTGGAGGAAGGTGT+CGG | + | chr1_3:44867960-44867979 | None:intergenic | 65.0% |
| AGAGGAACGGTGGTCGACGG+CGG | + | chr1_3:44867976-44867995 | None:intergenic | 65.0% | |
| GCGTCTGGCGGAGTGTGAGA+GGG | + | chr1_3:44868105-44868124 | None:intergenic | 65.0% | |
| GAGGGACAACGGCGGAGGAA+GGG | + | chr1_3:44868130-44868149 | None:intergenic | 65.0% | |
| TCGATCAGCGTGCGCGAGGA+GGG | + | chr1_3:44868148-44868167 | None:intergenic | 65.0% | |
| ATCGATCAGCGTGCGCGAGG+AGG | + | chr1_3:44868149-44868168 | None:intergenic | 65.0% | |
| AGCACGACGCTCCTCGGATC+AGG | + | chr1_3:44868511-44868530 | None:intergenic | 65.0% | |
| TACAGGGAGGGCAGAGTGGG+GGG | + | chr1_3:44870095-44870114 | None:intergenic | 65.0% | |
| TGGTCGACGGCGGTGGAGGA+AGG | + | chr1_3:44867966-44867985 | None:intergenic | 70.0% | |
| CGCGTCTGGCGGAGTGTGAG+AGG | + | chr1_3:44868106-44868125 | None:intergenic | 70.0% | |
| GGAGGAAGGGTCGCGTCTGG+CGG | + | chr1_3:44868117-44868136 | None:intergenic | 70.0% | |
| GGAGGGACAACGGCGGAGGA+AGG | + | chr1_3:44868131-44868150 | None:intergenic | 70.0% | |
| TGCGCGAGGAGGGACAACGG+CGG | + | chr1_3:44868138-44868157 | None:intergenic | 70.0% | |
| GCGTGCGCGAGGAGGGACAA+CGG | + | chr1_3:44868141-44868160 | None:intergenic | 70.0% | |
| ACGGTGGTCGACGGCGGTGG+AGG | + | chr1_3:44867970-44867989 | None:intergenic | 75.0% | |
| GGAACGGTGGTCGACGGCGG+TGG | + | chr1_3:44867973-44867992 | None:intergenic | 75.0% | |
| GGCGGAGGAAGGGTCGCGTC+TGG | + | chr1_3:44868120-44868139 | None:intergenic | 75.0% | |
| GCGAGGAGGGACAACGGCGG+AGG | + | chr1_3:44868135-44868154 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44867886 | 44872819 | 44867886 | ID=Msa0120230;Name=Msa0120230 |
| chr1_3 | mRNA | 44867886 | 44872819 | 44867886 | ID=Msa0120230-mRNA-1;Parent=Msa0120230;Name=Msa0120230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=317|1|1|1|0.87|0.77|9|353|329 |
| chr1_3 | exon | 44867886 | 44868363 | 44867886 | ID=Msa0120230-mRNA-1:exon:13451;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44868634 | 44868763 | 44868634 | ID=Msa0120230-mRNA-1:exon:13450;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44868942 | 44869061 | 44868942 | ID=Msa0120230-mRNA-1:exon:13449;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44869620 | 44869775 | 44869620 | ID=Msa0120230-mRNA-1:exon:13448;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44869927 | 44870028 | 44869927 | ID=Msa0120230-mRNA-1:exon:13447;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44870156 | 44870223 | 44870156 | ID=Msa0120230-mRNA-1:exon:13446;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44871727 | 44871902 | 44871727 | ID=Msa0120230-mRNA-1:exon:13445;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44871982 | 44872117 | 44871982 | ID=Msa0120230-mRNA-1:exon:13444;Parent=Msa0120230-mRNA-1 |
| chr1_3 | exon | 44872526 | 44872819 | 44872526 | ID=Msa0120230-mRNA-1:exon:13443;Parent=Msa0120230-mRNA-1 |
| chr1_3 | five_prime_UTR | 44872526 | 44872819 | 44872526 | ID=Msa0120230-mRNA-1:five_prime_utr;Parent=Msa0120230-mRNA-1 |
| chr1_3 | five_prime_UTR | 44872095 | 44872117 | 44872095 | ID=Msa0120230-mRNA-1:five_prime_utr;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44871982 | 44872094 | 44871982 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44871727 | 44871902 | 44871727 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44870156 | 44870223 | 44870156 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44869927 | 44870028 | 44869927 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44869620 | 44869775 | 44869620 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44868942 | 44869061 | 44868942 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44868634 | 44868763 | 44868634 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | CDS | 44868239 | 44868363 | 44868239 | ID=Msa0120230-mRNA-1:cds;Parent=Msa0120230-mRNA-1 |
| chr1_3 | three_prime_UTR | 44867886 | 44868238 | 44867886 | ID=Msa0120230-mRNA-1:three_prime_utr;Parent=Msa0120230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
