AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025050 MtrunA17_Chr1g0179611 98.352 546 7 1 1 544 1 546 0.0 1122
Msa0025050 MtrunA17_Chr4g0027671 67.170 530 166 2 12 533 7 536 0.0 758
Msa0025050 MtrunA17_Chr2g0320631 68.550 531 148 5 11 530 7 529 0.0 749
Msa0025050 MtrunA17_Chr5g0407121 53.509 456 154 4 23 477 17 415 8.25e-172 493
Msa0025050 MtrunA17_Chr8g0370321 52.203 454 157 4 23 476 17 410 9.01e-169 485
Msa0025050 MtrunA17_Chr3g0116701 38.608 158 90 4 29 186 80 230 3.95e-27 114
Msa0025050 MtrunA17_Chr3g0116701 30.899 178 88 6 317 476 259 419 2.14e-17 84.7
Msa0025050 MtrunA17_Chr3g0139371 36.250 160 95 4 27 186 58 210 7.81e-27 112
Msa0025050 MtrunA17_Chr3g0139371 32.955 176 91 3 317 478 238 400 2.59e-21 96.3
Msa0025050 MtrunA17_Chr4g0058241 37.580 157 91 4 29 185 84 233 1.57e-26 112
Msa0025050 MtrunA17_Chr4g0058241 30.857 175 86 6 317 473 263 420 7.05e-16 80.1
Msa0025050 MtrunA17_Chr3g0123491 32.941 170 104 5 19 185 66 228 4.72e-24 104
Msa0025050 MtrunA17_Chr3g0123491 33.654 104 63 1 317 420 260 357 1.98e-13 72.4
Msa0025050 MtrunA17_Chr8g0369241 40.136 147 82 3 41 186 136 277 4.27e-23 103
Msa0025050 MtrunA17_Chr8g0369241 38.333 120 64 3 308 423 273 386 9.62e-16 80.9
Msa0025050 MtrunA17_Chr6g0480541 29.775 178 109 5 306 476 1032 1200 2.50e-19 92.4
Msa0025050 MtrunA17_Chr6g0480541 33.125 160 96 4 30 185 886 1038 3.73e-15 79.0
Msa0025050 MtrunA17_Chr5g0437131 29.944 177 110 5 306 476 537 705 5.73e-18 87.4
Msa0025050 MtrunA17_Chr5g0437131 33.548 155 94 3 35 185 394 543 7.80e-15 77.8
Msa0025050 MtrunA17_Chr1g0210061 32.500 160 97 5 29 183 596 749 3.36e-17 85.5
Msa0025050 MtrunA17_Chr1g0210061 31.720 186 102 5 308 476 748 925 3.02e-15 79.3
Msa0025050 MtrunA17_Chr4g0065851 34.254 181 92 9 306 477 155 317 2.96e-12 69.3
Msa0025050 MtrunA17_Chr4g0045841 32.292 192 107 9 289 476 168 340 7.27e-12 67.4
Msa0025050 MtrunA17_Chr8g0348481 33.898 177 87 9 308 476 169 323 4.43e-11 64.7
Msa0025050 MtrunA17_Chr8g0387401 28.870 239 132 9 289 521 165 371 5.83e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025050 AT3G53030.1 72.368 532 124 6 10 535 8 522 0.0 786
Msa0025050 AT3G44850.1 69.392 526 145 5 9 524 10 529 0.0 753
Msa0025050 AT5G22840.1 69.349 522 147 4 10 528 11 522 0.0 751
Msa0025050 AT4G35500.1 53.304 454 158 4 25 478 19 418 6.09e-172 493
Msa0025050 AT2G17530.1 51.101 454 167 3 25 478 19 417 1.99e-163 472
Msa0025050 AT2G17530.3 51.101 454 167 3 25 478 19 417 1.99e-163 472
Msa0025050 AT4G35500.2 51.429 455 166 5 25 478 19 419 9.03e-163 470
Msa0025050 AT2G17530.2 49.868 379 135 3 25 403 19 342 2.47e-124 369
Msa0025050 AT4G24740.4 37.209 172 100 5 29 200 84 247 2.93e-28 115
Msa0025050 AT4G24740.3 37.209 172 100 5 29 200 84 247 4.70e-28 115
Msa0025050 AT4G24740.3 35.833 120 70 2 284 403 231 343 2.02e-14 75.1
Msa0025050 AT4G24740.7 37.209 172 100 5 29 200 46 209 7.94e-28 115
Msa0025050 AT4G24740.7 29.858 211 112 7 284 476 193 385 8.63e-18 85.9
Msa0025050 AT4G24740.1 37.209 172 100 5 29 200 84 247 1.13e-27 115
Msa0025050 AT4G24740.1 29.858 211 112 7 284 476 231 423 9.37e-18 86.3
Msa0025050 AT4G32660.2 35.625 160 96 3 27 186 55 207 2.43e-26 110
Msa0025050 AT4G32660.2 42.574 101 51 3 317 416 235 329 2.49e-15 78.2
Msa0025050 AT4G32660.3 35.625 160 96 3 27 186 47 199 3.33e-26 110
Msa0025050 AT4G32660.3 34.706 170 93 5 317 476 227 388 8.30e-18 85.9
Msa0025050 AT4G32660.1 35.625 160 96 3 27 186 55 207 3.67e-26 110
Msa0025050 AT4G32660.1 34.706 170 93 5 317 476 235 396 9.34e-18 85.9
Msa0025050 AT3G53570.1 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0025050 AT3G53570.1 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0025050 AT3G53570.4 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0025050 AT3G53570.4 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0025050 AT3G53570.2 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0025050 AT3G53570.2 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0025050 AT3G53570.3 36.471 170 98 5 20 186 75 237 7.44e-26 110
Msa0025050 AT3G53570.3 31.844 179 88 5 316 476 267 429 1.67e-17 85.5
Msa0025050 AT3G53570.5 36.471 170 98 5 20 186 75 237 7.44e-26 110
Msa0025050 AT3G53570.5 31.844 179 88 5 316 476 267 429 1.67e-17 85.5
Msa0025050 AT4G24740.5 37.748 151 87 4 50 200 1 144 1.32e-24 103
Msa0025050 AT4G24740.5 35.833 120 70 2 284 403 128 240 1.23e-14 74.3
Msa0025050 AT4G24740.6 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0025050 AT4G24740.6 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0025050 AT4G24740.9 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0025050 AT4G24740.9 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0025050 AT4G24740.2 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0025050 AT4G24740.2 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0025050 AT5G35980.1 40.000 150 84 3 43 191 121 265 4.74e-24 107
Msa0025050 AT5G35980.1 38.525 122 65 4 306 423 253 368 3.09e-15 79.7
Msa0025050 AT5G35980.3 38.415 164 91 4 33 191 72 230 4.78e-24 107
Msa0025050 AT5G35980.3 38.525 122 65 4 306 423 218 333 4.08e-15 79.3
Msa0025050 AT5G35980.2 38.415 164 91 4 33 191 107 265 7.70e-24 106
Msa0025050 AT5G35980.2 38.525 122 65 4 306 423 253 368 4.08e-15 79.0
Msa0025050 AT1G73460.2 30.726 179 108 5 306 477 992 1161 6.94e-21 97.8
Msa0025050 AT1G73460.2 32.886 149 91 3 41 185 855 998 3.29e-13 73.2
Msa0025050 AT1G73460.1 30.726 179 108 5 306 477 992 1161 6.94e-21 97.8
Msa0025050 AT1G73460.1 32.886 149 91 3 41 185 855 998 3.29e-13 73.2
Msa0025050 AT1G73450.1 30.726 179 108 5 306 477 975 1144 8.67e-21 97.4
Msa0025050 AT1G73450.1 32.886 149 91 3 41 185 838 981 3.69e-13 73.2
Msa0025050 AT4G24740.10 29.858 211 112 7 284 476 25 217 4.36e-19 86.7
Msa0025050 AT4G24740.8 29.858 211 112 7 284 476 25 217 4.36e-19 86.7
Msa0025050 AT2G40120.1 31.073 177 110 5 306 477 395 564 9.94e-19 90.1
Msa0025050 AT2G40120.1 33.548 155 94 3 35 185 252 401 1.47e-14 77.0
Msa0025050 AT4G32660.4 34.706 170 93 5 317 476 123 284 4.74e-18 85.1
Msa0025050 AT4G32660.4 36.364 99 57 2 88 186 3 95 7.47e-14 72.8
Msa0025050 AT3G17750.1 29.545 176 112 4 306 476 961 1129 7.15e-18 88.2
Msa0025050 AT3G17750.1 32.500 160 97 4 30 185 815 967 5.97e-14 75.5
Msa0025050 AT3G25840.1 31.250 160 99 5 29 183 603 756 3.11e-15 79.7
Msa0025050 AT3G25840.1 32.571 175 97 5 317 476 764 932 4.26e-14 75.9
Msa0025050 AT3G53640.1 33.146 178 93 7 317 476 470 639 3.82e-15 79.0
Msa0025050 AT3G53640.1 30.625 160 100 5 29 183 309 462 5.18e-13 72.0
Msa0025050 AT1G13350.1 30.625 160 100 5 29 183 428 581 6.28e-15 78.6
Msa0025050 AT1G13350.1 30.682 176 100 5 317 476 589 758 1.85e-14 77.0
Msa0025050 AT3G25840.2 31.250 160 99 5 29 183 341 494 7.40e-15 78.2
Msa0025050 AT3G25840.2 32.571 175 97 5 317 476 502 670 4.36e-14 75.5
Msa0025050 AT1G13350.2 30.625 160 100 5 29 183 455 608 8.86e-15 78.2
Msa0025050 AT1G13350.2 30.682 176 100 5 317 476 616 785 2.68e-14 76.6
Msa0025050 AT1G13350.3 30.625 160 100 5 29 183 501 654 1.57e-14 77.4
Msa0025050 AT1G13350.3 30.682 176 100 5 317 476 662 831 3.85e-14 75.9
Msa0025050 AT1G73670.1 30.526 190 106 9 306 486 220 392 3.32e-12 69.7
Msa0025050 AT3G59790.1 29.333 225 126 9 289 510 173 367 7.42e-12 67.8
Msa0025050 AT2G30980.1 31.148 183 101 8 315 494 211 371 4.97e-11 65.5

Find 168 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATAAGCACTTTATTTA+AGG 0.062791 1_1:-48066870 None:intergenic
AGAGATATGCTTTCATATTT+TGG 0.133189 1_1:+48062943 Msa0025050:CDS
CATCTTTGTCCTTGTTCTTC+TGG 0.137125 1_1:-48067087 None:intergenic
CATCATAATTGTATTCTTAA+TGG 0.186731 1_1:-48067418 None:intergenic
ATCTTGATAGAGCTCTTTCC+TGG 0.228074 1_1:+48067220 Msa0025050:three_prime_UTR
AGTGAAAGAAAAGAGAAAAT+TGG 0.252561 1_1:-48061433 None:intergenic
CGGGATTTCTTCAATAGATA+TGG 0.256557 1_1:+48066812 Msa0025050:CDS
GCCCTTAAATAAAGTGCTTA+TGG 0.273324 1_1:+48066868 Msa0025050:CDS
GAATGTAGGTCCCCGTCTTT+TGG 0.274592 1_1:+48067009 Msa0025050:CDS
GCATTAATGATGGAACTTCT+TGG 0.282888 1_1:+48066668 Msa0025050:CDS
TATACTTAATAAGAGTTAAT+AGG 0.290620 1_1:-48062886 None:intergenic
TCTCCACTGTTTGGCTCGCT+TGG 0.295410 1_1:+48061655 Msa0025050:CDS
CCTTGGAATACTTTCTTTGA+TGG 0.309821 1_1:-48067181 None:intergenic
TTAGACCATTTCAAGCATTC+TGG 0.313545 1_1:+48062815 Msa0025050:CDS
TCCATAAGCACTTTATTTAA+GGG 0.317347 1_1:-48066869 None:intergenic
ATTCTACATCTGCGGATCTT+TGG 0.322906 1_1:+48063539 Msa0025050:CDS
TCACGGATTGCCTATCAATA+TGG 0.323581 1_1:+48062916 Msa0025050:CDS
TTGACTTTGGTAATGCTTGC+TGG 0.327850 1_1:+48063443 Msa0025050:CDS
ATAGTCTTGTCTTTACTGTT+AGG 0.332521 1_1:-48063094 None:intergenic
ATCTTCGGTGCCTTCGTCTT+CGG 0.333303 1_1:-48061541 None:intergenic
CGTTCAGAGCAAGCTTGGTT+GGG 0.339812 1_1:+48061626 Msa0025050:CDS
GGGGTCATTTCTCCACTGTT+TGG 0.341167 1_1:+48061646 Msa0025050:CDS
ATATCCGTCGGCTGCGATTC+TGG 0.344849 1_1:+48066846 Msa0025050:CDS
CTCCACTGTTTGGCTCGCTT+GGG 0.347766 1_1:+48061656 Msa0025050:CDS
AAGAGGAGCACCAGATTTCC+TGG 0.363522 1_1:-48063065 None:intergenic
GAGGCCATGGAGGCTGGAAT+TGG 0.365219 1_1:+48067115 Msa0025050:CDS
ATACAAACATGCTGTCCATT+TGG 0.376683 1_1:-48062839 None:intergenic
TGTGCGTGTGAATTGTTTCC+AGG 0.377617 1_1:+48067282 Msa0025050:three_prime_UTR
ATAGTGGTGACAACTTTGAT+AGG 0.377741 1_1:+48063617 Msa0025050:CDS
GTTGTACTTGTTTAAAGCTA+GGG 0.385520 1_1:+48067336 Msa0025050:three_prime_UTR
TCTAAAGATCCCAGGAAATC+TGG 0.398637 1_1:+48063055 Msa0025050:CDS
ATCTCTTTAACCATATTGAT+AGG 0.403343 1_1:-48062926 None:intergenic
GAGAGGGAGGCCATGGAGGC+TGG 0.404591 1_1:+48067109 Msa0025050:CDS
TGATTAGAAGACGGCATTGA+TGG 0.409832 1_1:-48067034 None:intergenic
GAGCTCATGTTGTATCCTTA+TGG 0.410716 1_1:-48067392 None:intergenic
GGAGGTGAAATCGCTGCTTT+CGG 0.420256 1_1:-48061520 None:intergenic
AAATGGACAGCATGTTTGTA+TGG 0.420622 1_1:+48062841 Msa0025050:CDS
ACAATTCACACGCACATCAT+TGG 0.423467 1_1:-48067275 None:intergenic
TTCAAGCATTCTGGTCCAAA+TGG 0.428400 1_1:+48062824 Msa0025050:CDS
AGAGACACTAAAACATCAAA+TGG 0.428919 1_1:+48063136 Msa0025050:CDS
CTAGTTCTGCTGGCACTAGT+AGG 0.430061 1_1:+48063314 Msa0025050:CDS
TTCGGAAATGCTGGATTGGA+TGG 0.433404 1_1:+48067312 Msa0025050:three_prime_UTR
ACATCCATGAGCTGCTTGCT+TGG 0.434213 1_1:-48063200 None:intergenic
TGAACTACTTGCGGCTGCCT+TGG 0.440976 1_1:-48067198 None:intergenic
CAATTCACACGCACATCATT+GGG 0.443168 1_1:-48067274 None:intergenic
GGTTGTACTTGTTTAAAGCT+AGG 0.446727 1_1:+48067335 Msa0025050:three_prime_UTR
TTTAATTGAATAATTCAGTA+AGG 0.451098 1_1:-48061371 None:intergenic
TTGGACCAGAATGCTTGAAA+TGG 0.452574 1_1:-48062820 None:intergenic
CGGTGCCCAGAGGTTATCCT+TGG 0.454662 1_1:+48063508 Msa0025050:CDS
CATATATCAAGAATATCATT+CGG 0.456043 1_1:-48067549 None:intergenic
GGCTACCACGCCGTTCGAAT+CGG 0.458904 1_1:+48061576 Msa0025050:CDS
TCTCTTGCAGAACTTGCATT+CGG 0.467917 1_1:-48063283 None:intergenic
GCATTACACAGAGGCTGCCC+TGG 0.469898 1_1:+48062724 Msa0025050:CDS
CGGAAATGCTGGATTGGATG+GGG 0.471040 1_1:+48067314 Msa0025050:three_prime_UTR
TCGGAAATGCTGGATTGGAT+GGG 0.472444 1_1:+48067313 Msa0025050:three_prime_UTR
CCGGCTGTAGGTCGTTTCTC+AGG 0.474020 1_1:-48066962 None:intergenic
GAAGTAGCAGTTTCAGCACC+AGG 0.474460 1_1:-48067061 None:intergenic
TGTATCCTTATGGTGTTGTC+TGG 0.480109 1_1:-48067382 None:intergenic
CATATCTATTGAAGAAATCC+CGG 0.482137 1_1:-48066811 None:intergenic
CAAAGATGAGAGGGAGGCCA+TGG 0.484725 1_1:+48067102 Msa0025050:CDS
CATTGATGGCTCCAAAAGAC+GGG 0.487038 1_1:-48067020 None:intergenic
TCGTTCAGAGCAAGCTTGGT+TGG 0.487627 1_1:+48061625 Msa0025050:CDS
AGCTCATGGATGTGCGGAGA+AGG 0.490342 1_1:+48063210 Msa0025050:CDS
GAAATCGCTGCTTTCGGTGG+TGG 0.490996 1_1:-48061514 None:intergenic
GCAAAATCGTTATCTCATCC+AGG 0.491981 1_1:-48062742 None:intergenic
AAGTGCAAGTTAGTTGACTT+TGG 0.494805 1_1:+48063430 Msa0025050:CDS
TCTTGTCAAAGATGTGATGA+TGG 0.495812 1_1:+48067459 Msa0025050:three_prime_UTR
GCCACCGCGACGGTAATCTT+CGG 0.497353 1_1:-48061556 None:intergenic
TGACAAGAGAAACAATCAAC+AGG 0.498250 1_1:-48067444 None:intergenic
TTCAATTAAATTAACCGCGA+AGG 0.498950 1_1:+48061384 Msa0025050:five_prime_UTR
TTTGATCCAAGGATAACCTC+TGG 0.500060 1_1:-48063514 None:intergenic
CGGATGTAGCAGGCATTGAC+CGG 0.500642 1_1:-48066981 None:intergenic
TGGAATGAAGTCAAAAGAGC+AGG 0.504504 1_1:+48063351 Msa0025050:CDS
AAAGCCAAGCAAGCAGCTCA+TGG 0.505034 1_1:+48063196 Msa0025050:CDS
GTTCAGAGCAAGCTTGGTTG+GGG 0.505953 1_1:+48061627 Msa0025050:CDS
CAGTAAAGACAAGACTATGC+TGG 0.508183 1_1:+48063099 Msa0025050:CDS
AAGAAGAACGAACAGAATGA+TGG 0.508503 1_1:-48061683 None:intergenic
TATAATTCTCAGATCGCACT+AGG 0.509453 1_1:+48066776 Msa0025050:intron
GAACAAGCTTCTAGTTCTGC+TGG 0.516084 1_1:+48063304 Msa0025050:CDS
CATTCATCCACGGATGTAGC+AGG 0.517627 1_1:-48066991 None:intergenic
TATGTCGTTCAGAGCAAGCT+TGG 0.518360 1_1:+48061621 Msa0025050:CDS
GTTTCCAATTCCAGCCTCCA+TGG 0.523041 1_1:-48067119 None:intergenic
TTACTGTTAGGAAGAATAAG+AGG 0.526154 1_1:-48063082 None:intergenic
GCATTTCCGAAAACAAGCCC+TGG 0.526381 1_1:-48067300 None:intergenic
TCTTGATAGAGCTCTTTCCT+GGG 0.533810 1_1:+48067221 Msa0025050:three_prime_UTR
GTCTGCCAGACAACACCATA+AGG 0.538235 1_1:+48067377 Msa0025050:three_prime_UTR
GACATAACGACCGGAGCTGA+AGG 0.539436 1_1:-48061604 None:intergenic
AAAGAGCAGGGCAACAGAAG+AGG 0.541507 1_1:+48063364 Msa0025050:CDS
TTCGGTGCCTTCGTCTTCGG+AGG 0.544959 1_1:-48061538 None:intergenic
ATCGGCGATACCTTCAGCTC+CGG 0.545934 1_1:+48061594 Msa0025050:CDS
GTCAATGCCTGCTACATCCG+TGG 0.547156 1_1:+48066984 Msa0025050:CDS
GATTTCCTGGGATCTTTAGA+CGG 0.549955 1_1:-48063052 None:intergenic
GAACAAGGACAAAGATGAGA+GGG 0.551701 1_1:+48067093 Msa0025050:CDS
GAGAAGGAGGCATCTGAAGA+TGG 0.552642 1_1:+48063226 Msa0025050:CDS
CTACATCCGTGGATGAATGT+AGG 0.555309 1_1:+48066995 Msa0025050:CDS
GCATTGATGGCTCCAAAAGA+CGG 0.555544 1_1:-48067021 None:intergenic
GGACCACTTAGCATTAATGA+TGG 0.555688 1_1:+48066658 Msa0025050:intron
GATCAATTGTTGATAAGAGA+AGG 0.558128 1_1:-48063030 None:intergenic
TCAAAGTTGTCACCACTATG+AGG 0.558782 1_1:-48063613 None:intergenic
GTTCCATCATTAATGCTAAG+TGG 0.559588 1_1:-48066661 None:intergenic
ATATCTATTGAAGAAATCCC+GGG 0.566218 1_1:-48066810 None:intergenic
GTATTATTTGATCCTCATAG+TGG 0.567179 1_1:+48063601 Msa0025050:CDS
ATTAAGTATAGTGATTATCA+CGG 0.569731 1_1:+48062899 Msa0025050:CDS
AAGAAATTTATTACCTTCCG+CGG 0.571931 1_1:-48066698 None:intergenic
GTGCGTGTGAATTGTTTCCA+GGG 0.573945 1_1:+48067283 Msa0025050:three_prime_UTR
CACTAGTAGGTTATCAGATG+CGG 0.576983 1_1:+48063327 Msa0025050:CDS
TTGATCCGTCTAAAGATCCC+AGG 0.577842 1_1:+48063047 Msa0025050:CDS
CAAGGACAAAGATGAGAGGG+AGG 0.580802 1_1:+48067096 Msa0025050:CDS
TGGGTCAAACAAATGGGTGG+CGG 0.584188 1_1:+48061480 Msa0025050:exon
TCTTGGAATGATGCCGCGGA+AGG 0.584206 1_1:+48066685 Msa0025050:CDS
GTGAATGATGAGGATGATGA+AGG 0.584654 1_1:+48061324 None:intergenic
CTATCAAGATGAACTACTTG+CGG 0.587404 1_1:-48067207 None:intergenic
TTGATCCAAGGATAACCTCT+GGG 0.587839 1_1:-48063513 None:intergenic
AGAAGAACGAACAGAATGAT+GGG 0.588817 1_1:-48061682 None:intergenic
GAAGGTATCGCCGATTCGAA+CGG 0.589832 1_1:-48061586 None:intergenic
TTGTACTTGTTTAAAGCTAG+GGG 0.591515 1_1:+48067337 Msa0025050:three_prime_UTR
GGTGAAATCGCTGCTTTCGG+TGG 0.592150 1_1:-48061517 None:intergenic
CACGCACATCATTGGGCATG+CGG 0.592850 1_1:-48067267 None:intergenic
TCATGGATGTGCGGAGAAGG+AGG 0.595831 1_1:+48063213 Msa0025050:CDS
CAAACAAGTCAATGCTAACA+AGG 0.601606 1_1:-48067490 None:intergenic
GCAGACACAAAGGAACTAGC+TGG 0.601970 1_1:-48067360 None:intergenic
CCTGAGAAACGACCTACAGC+CGG 0.605154 1_1:+48066962 Msa0025050:CDS
GATGGTAATCATGAAACCTC+TGG 0.606715 1_1:+48063244 Msa0025050:CDS
ATAATTCTCAGATCGCACTA+GGG 0.611148 1_1:+48066777 Msa0025050:intron
AGAGGAGCACCAGATTTCCT+GGG 0.614355 1_1:-48063064 None:intergenic
AGATGATTCTACAGCACCAG+AGG 0.614399 1_1:-48063260 None:intergenic
TAGTGGTGACAACTTTGATA+GGG 0.616977 1_1:+48063618 Msa0025050:CDS
AAGTAGCAGTTTCAGCACCA+GGG 0.617453 1_1:-48067060 None:intergenic
GTGTTGTCTGGCAGACACAA+AGG 0.618806 1_1:-48067370 None:intergenic
ATCCCAAGCGAGCCAAACAG+TGG 0.619472 1_1:-48061658 None:intergenic
TTTGATGGAGAATGCATGAG+TGG 0.621786 1_1:-48067166 None:intergenic
CAAAATCGTTATCTCATCCA+GGG 0.625815 1_1:-48062741 None:intergenic
CCGTCTTCTAATCACAACCC+TGG 0.626806 1_1:+48067043 Msa0025050:CDS
CCATCAAAGAAAGTATTCCA+AGG 0.627091 1_1:+48067181 Msa0025050:CDS
ATATTCAGACAAGACAGTAT+CGG 0.630386 1_1:+48063488 Msa0025050:CDS
TACTTCTGACCAGAAGAACA+AGG 0.631653 1_1:+48067078 Msa0025050:CDS
AGGGCCAGAATCGCAGCCGA+CGG 0.635004 1_1:-48066850 None:intergenic
AGAACAAGGACAAAGATGAG+AGG 0.640119 1_1:+48067092 Msa0025050:CDS
GCTCTGAACGACATAACGAC+CGG 0.640589 1_1:-48061613 None:intergenic
ATCAAAATATTCTACATCTG+CGG 0.641197 1_1:+48063531 Msa0025050:CDS
AGATGAGAGGGAGGCCATGG+AGG 0.643015 1_1:+48067105 Msa0025050:CDS
AACTTCTTGGAATGATGCCG+CGG 0.644175 1_1:+48066681 Msa0025050:CDS
CCAGGGTTGTGATTAGAAGA+CGG 0.645495 1_1:-48067043 None:intergenic
AGTAGGTTATCAGATGCGGA+TGG 0.646147 1_1:+48063331 Msa0025050:CDS
CGGGGACCTACATTCATCCA+CGG 0.647503 1_1:-48067001 None:intergenic
GTGATTTGAGACATATCCGT+CGG 0.649441 1_1:+48066834 Msa0025050:CDS
ACCGAAGATTACCGTCGCGG+TGG 0.649489 1_1:+48061555 Msa0025050:CDS
GTTTCTCAGGAACAAAGTCA+AGG 0.651456 1_1:-48066949 None:intergenic
TCAATGCTAACAAGGAACAA+AGG 0.653681 1_1:-48067482 None:intergenic
TAATTCTCAGATCGCACTAG+GGG 0.655674 1_1:+48066778 Msa0025050:intron
GGAATGAAGTCAAAAGAGCA+GGG 0.655804 1_1:+48063352 Msa0025050:CDS
GCAAGCAGCTCATGGATGTG+CGG 0.656226 1_1:+48063204 Msa0025050:CDS
GAGTTAATAGGTTATCCCCA+AGG 0.667992 1_1:-48062874 None:intergenic
GCAGTTTCTGTCTCACTGTG+CGG 0.668245 1_1:-48063390 None:intergenic
ATTCTCAGATCGCACTAGGG+GGG 0.670913 1_1:+48066780 Msa0025050:intron
TAAATACAGTCAAGTCACCC+AGG 0.674240 1_1:-48067238 None:intergenic
AGCAGGCATTGACCGGCTGT+AGG 0.674560 1_1:-48066974 None:intergenic
AATTCTCAGATCGCACTAGG+GGG 0.677507 1_1:+48066779 Msa0025050:intron
GATTTCACCTCCGAAGACGA+AGG 0.680908 1_1:+48061531 Msa0025050:CDS
CGGCGTGGTAGCCACCGCGA+CGG 0.681696 1_1:-48061566 None:intergenic
TGGAGATTTGCAGAGATACG+TGG 0.683349 1_1:+48062676 Msa0025050:intron
CTTGCACTTGACATCAGCTG+AGG 0.686469 1_1:-48063416 None:intergenic
TGACAACTTTGATAGGGACG+AGG 0.691000 1_1:+48063624 Msa0025050:CDS
GAGTGCTCAGCATTACACAG+AGG 0.702864 1_1:+48062715 Msa0025050:CDS
GGCACCGAAGATTACCGTCG+CGG 0.704829 1_1:+48061552 Msa0025050:CDS
TATCGCCGATTCGAACGGCG+TGG 0.712115 1_1:-48061581 None:intergenic
ATTGATGGCTCCAAAAGACG+GGG 0.727950 1_1:-48067019 None:intergenic
AAGACAGTATCGGTGCCCAG+AGG 0.753096 1_1:+48063498 Msa0025050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTACAATTTTTTTT+GGG + chr1_1:48061461-48061480 Msa0025050:five_prime_UTR 10.0%
!! AATATTATTTATGTGTTAAT+AGG + chr1_1:48063718-48063737 Msa0025050:intron 10.0%
!!! ATAGTTAAAATTATAGTTTT+CGG - chr1_1:48064011-48064030 None:intergenic 10.0%
!!! AATTTTAACTATTTATGAAT+TGG + chr1_1:48064019-48064038 Msa0025050:intron 10.0%
!!! ATTTTAACTATTTATGAATT+GGG + chr1_1:48064020-48064039 Msa0025050:intron 10.0%
!! TTTAATTGAATAATTCAGTA+AGG - chr1_1:48061374-48061393 None:intergenic 15.0%
!!! CTTGTAATTACAATTTTTTT+TGG + chr1_1:48061460-48061479 Msa0025050:five_prime_UTR 15.0%
!!! TAAATGATACTTTGAATTTT+AGG + chr1_1:48061822-48061841 Msa0025050:intron 15.0%
!!! AAATGATACTTTGAATTTTA+GGG + chr1_1:48061823-48061842 Msa0025050:intron 15.0%
!!! AAAATAATGCTTTGAATTTT+AGG + chr1_1:48062180-48062199 Msa0025050:intron 15.0%
!!! AAATAATGCTTTGAATTTTA+GGG + chr1_1:48062181-48062200 Msa0025050:intron 15.0%
!! TATACTTAATAAGAGTTAAT+AGG - chr1_1:48062889-48062908 None:intergenic 15.0%
!! AAATATAAATTCTGTCAAAA+AGG + chr1_1:48064571-48064590 Msa0025050:intron 15.0%
!!! TAAGATTTTCCTATATAATT+AGG + chr1_1:48065058-48065077 Msa0025050:intron 15.0%
!!! AAGATTTTCCTATATAATTA+GGG + chr1_1:48065059-48065078 Msa0025050:intron 15.0%
!!! TTTTGAAATATGAAATAGAA+GGG - chr1_1:48065833-48065852 None:intergenic 15.0%
!!! GAACTTAAAATGATTTTAAA+AGG - chr1_1:48066135-48066154 None:intergenic 15.0%
!!! AAAAGATGATTTTTATACTA+CGG + chr1_1:48066156-48066175 Msa0025050:intron 15.0%
!! ACATTTAGTTACAAATATTA+TGG + chr1_1:48066182-48066201 Msa0025050:intron 15.0%
!!! TAAAAAGAGAAGATTTTTAG+GGG - chr1_1:48061709-48061728 None:intergenic 20.0%
!!! GTAAAAAGAGAAGATTTTTA+GGG - chr1_1:48061710-48061729 None:intergenic 20.0%
!!! TGTAAAAAGAGAAGATTTTT+AGG - chr1_1:48061711-48061730 None:intergenic 20.0%
!!! TATTTTTTTAGCTTATGCAA+AGG - chr1_1:48062049-48062068 None:intergenic 20.0%
!!! AATAGAATACCTTGAATTTT+AGG + chr1_1:48062108-48062127 Msa0025050:intron 20.0%
!!! ATAGAATACCTTGAATTTTA+GGG + chr1_1:48062109-48062128 Msa0025050:intron 20.0%
!!! GAGCAATTTAATTTATATCT+AGG + chr1_1:48062154-48062173 Msa0025050:intron 20.0%
!!! CAGTTTTTATCTTTTGTTTT+TGG + chr1_1:48062502-48062521 Msa0025050:intron 20.0%
!! ATTAAGTATAGTGATTATCA+CGG + chr1_1:48062899-48062918 Msa0025050:CDS 20.0%
!! AAAACCTTCAAAAATTTAGA+CGG - chr1_1:48063827-48063846 None:intergenic 20.0%
!!! AAATTATAGTTTTCGGTTAA+CGG - chr1_1:48064004-48064023 None:intergenic 20.0%
!!! AAAAAAATGAGTTTTAGAAG+AGG + chr1_1:48064381-48064400 Msa0025050:intron 20.0%
!!! AAAAAATGAGTTTTAGAAGA+GGG + chr1_1:48064382-48064401 Msa0025050:intron 20.0%
!!! CTAAAATCATTCTTTTACAA+AGG + chr1_1:48064602-48064621 Msa0025050:intron 20.0%
!! TGAAAAAAAAACACTAGTAT+GGG + chr1_1:48065126-48065145 Msa0025050:intron 20.0%
!! ACAAATTAATAAATAGGGAT+GGG - chr1_1:48065782-48065801 None:intergenic 20.0%
!! TACAAATTAATAAATAGGGA+TGG - chr1_1:48065783-48065802 None:intergenic 20.0%
!! CGCTTACAAATTAATAAATA+GGG - chr1_1:48065787-48065806 None:intergenic 20.0%
!! TCGCTTACAAATTAATAAAT+AGG - chr1_1:48065788-48065807 None:intergenic 20.0%
!!! GTTTTGAAATATGAAATAGA+AGG - chr1_1:48065834-48065853 None:intergenic 20.0%
!!! ATTATCTTCCTTTAGTTTAA+CGG + chr1_1:48066004-48066023 Msa0025050:intron 20.0%
!! GTAAAATTTGAACTTACTAA+TGG + chr1_1:48066331-48066350 Msa0025050:intron 20.0%
!!! TTGATTTGCATGATATATTT+TGG - chr1_1:48066374-48066393 None:intergenic 20.0%
!! TGATCATAAATGAAAAGAAA+TGG - chr1_1:48066728-48066747 None:intergenic 20.0%
!! CATCATAATTGTATTCTTAA+TGG - chr1_1:48067421-48067440 None:intergenic 20.0%
!! CATATATCAAGAATATCATT+CGG - chr1_1:48067552-48067571 None:intergenic 20.0%
! AGTGAAAGAAAAGAGAAAAT+TGG - chr1_1:48061436-48061455 None:intergenic 25.0%
!!! TTTTTTTTGGGTCAAACAAA+TGG + chr1_1:48061473-48061492 Msa0025050:exon 25.0%
!!! TTTTTTTGGGTCAAACAAAT+GGG + chr1_1:48061474-48061493 Msa0025050:exon 25.0%
!!! TTTTTGGTTGAACAATTTGA+GGG + chr1_1:48061793-48061812 Msa0025050:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_1:48061998-48062017 None:intergenic 25.0%
! AAAACGACTTATAGCTTATA+TGG + chr1_1:48062370-48062389 Msa0025050:intron 25.0%
! AAACGACTTATAGCTTATAT+GGG + chr1_1:48062371-48062390 Msa0025050:intron 25.0%
! ATCTCTTTAACCATATTGAT+AGG - chr1_1:48062929-48062948 None:intergenic 25.0%
!! AGAGATATGCTTTCATATTT+TGG + chr1_1:48062943-48062962 Msa0025050:CDS 25.0%
!!! ATATGCTTTCATATTTTGGT+TGG + chr1_1:48062947-48062966 Msa0025050:CDS 25.0%
!! TGATAAGAGAAGGATATTTT+CGG - chr1_1:48063023-48063042 None:intergenic 25.0%
!!! ATGTAGAATATTTTGATCCA+AGG - chr1_1:48063528-48063547 None:intergenic 25.0%
! ATCAAAATATTCTACATCTG+CGG + chr1_1:48063531-48063550 Msa0025050:CDS 25.0%
! AAACCTTCAAAAATTTAGAC+GGG - chr1_1:48063826-48063845 None:intergenic 25.0%
!! ATATTAGAGCTTTGTATTAC+AGG - chr1_1:48063912-48063931 None:intergenic 25.0%
! ATTGACTAAATATCATGGAA+TGG + chr1_1:48064044-48064063 Msa0025050:intron 25.0%
! ATAAACAAGAAAACGTGAAA+AGG - chr1_1:48064176-48064195 None:intergenic 25.0%
!!! ACGTTTTCTTGTTTATATGA+GGG + chr1_1:48064180-48064199 Msa0025050:intron 25.0%
!!! AAAAATGAGTTTTAGAAGAG+GGG + chr1_1:48064383-48064402 Msa0025050:intron 25.0%
! AAAAAATCTCAAGAGACAAT+AGG + chr1_1:48064409-48064428 Msa0025050:intron 25.0%
!!! TTCTAAAACAGAGATAGAAA+AGG + chr1_1:48064444-48064463 Msa0025050:intron 25.0%
!! TCTAAAACAGAGATAGAAAA+GGG + chr1_1:48064445-48064464 Msa0025050:intron 25.0%
!!! TTTGACTTTTCTTTGATGTT+TGG - chr1_1:48064554-48064573 None:intergenic 25.0%
! TAGCAATAATGATGTCAATA+GGG + chr1_1:48064663-48064682 Msa0025050:intron 25.0%
! TCTAATAGATAAATTCAGGT+AGG - chr1_1:48064824-48064843 None:intergenic 25.0%
! GTCATCTAATAGATAAATTC+AGG - chr1_1:48064828-48064847 None:intergenic 25.0%
! TCTATTAGATGACCTTATTA+TGG + chr1_1:48064835-48064854 Msa0025050:intron 25.0%
! TTGTCTCATTAACCATAATA+AGG - chr1_1:48064850-48064869 None:intergenic 25.0%
!! GGAAAAATCTTTATTTCTCA+AGG + chr1_1:48064900-48064919 Msa0025050:intron 25.0%
!! ATCTCATAATAGAGCTTTTT+AGG - chr1_1:48064937-48064956 None:intergenic 25.0%
!! TGTATAATGGGATGTAATTA+AGG + chr1_1:48064974-48064993 Msa0025050:intron 25.0%
! CTGAAAAAAAAACACTAGTA+TGG + chr1_1:48065125-48065144 Msa0025050:intron 25.0%
! ATTTCCATGTACTGAAATTA+AGG + chr1_1:48065203-48065222 Msa0025050:intron 25.0%
!! AGATGAATGATGCAAATTTT+AGG + chr1_1:48065256-48065275 Msa0025050:intron 25.0%
!! TTTTTACTATAAGGAATGTG+TGG - chr1_1:48065430-48065449 None:intergenic 25.0%
! ATTCCTTATAGTAAAAAGCA+TGG + chr1_1:48065433-48065452 Msa0025050:intron 25.0%
!!! TAACCATGCTTTTTACTATA+AGG - chr1_1:48065439-48065458 None:intergenic 25.0%
! AATTGTGAATTGTGAAATTC+TGG - chr1_1:48065633-48065652 None:intergenic 25.0%
! AAATTAATAAATAGGGATGG+GGG - chr1_1:48065780-48065799 None:intergenic 25.0%
! CAAATTAATAAATAGGGATG+GGG - chr1_1:48065781-48065800 None:intergenic 25.0%
! AAAATCCATTTAGAAGAGAA+GGG - chr1_1:48065903-48065922 None:intergenic 25.0%
! TAAAATCCATTTAGAAGAGA+AGG - chr1_1:48065904-48065923 None:intergenic 25.0%
!!! TCTCTTCTAAATGGATTTTA+TGG + chr1_1:48065904-48065923 Msa0025050:intron 25.0%
! CTAAAGGAAGATAATAAAGT+TGG - chr1_1:48065999-48066018 None:intergenic 25.0%
!! TTATCTTCCTTTAGTTTAAC+GGG + chr1_1:48066005-48066024 Msa0025050:intron 25.0%
! AAAAAAAAACTGTCCAAACA+AGG + chr1_1:48066258-48066277 Msa0025050:intron 25.0%
!!! TTATTGTTTTGTTGAGGAAA+TGG + chr1_1:48066408-48066427 Msa0025050:intron 25.0%
! AGTAAGTAGCATTAAAAAAC+AGG - chr1_1:48066446-48066465 None:intergenic 25.0%
!!! TGTTTTTTAATGCTACTTAC+TGG + chr1_1:48066445-48066464 Msa0025050:intron 25.0%
! ACATAACAAAAGAATCAACA+TGG - chr1_1:48066526-48066545 None:intergenic 25.0%
!! CTCTATCTTTAATTTATCTC+AGG + chr1_1:48066637-48066656 Msa0025050:intron 25.0%
! CATAAATGAAAAGAAATGGA+TGG - chr1_1:48066724-48066743 None:intergenic 25.0%
!! TCCATAAGCACTTTATTTAA+GGG - chr1_1:48066872-48066891 None:intergenic 25.0%
TTCAATTAAATTAACCGCGA+AGG + chr1_1:48061384-48061403 Msa0025050:five_prime_UTR 30.0%
!!! GTTTTTGGTTGAACAATTTG+AGG + chr1_1:48061792-48061811 Msa0025050:intron 30.0%
! GATTAGCCATTTAGTGATTT+GGG + chr1_1:48061845-48061864 Msa0025050:intron 30.0%
ATTAGCCATTTAGTGATTTG+GGG + chr1_1:48061846-48061865 Msa0025050:intron 30.0%
TAATAAACCAATGGCTCATT+TGG - chr1_1:48062079-48062098 None:intergenic 30.0%
CTTCCTAGATAATAAACCAA+TGG - chr1_1:48062088-48062107 None:intergenic 30.0%
TTAAGCAACCATTTAGACTA+CGG + chr1_1:48062205-48062224 Msa0025050:intron 30.0%
TTTCATAAGCTATCTTAGAG+AGG - chr1_1:48062353-48062372 None:intergenic 30.0%
CATCAGTTTATGTTATAAGC+TGG + chr1_1:48062451-48062470 Msa0025050:intron 30.0%
TTAACTGTTCATCCAAACAT+TGG + chr1_1:48062477-48062496 Msa0025050:intron 30.0%
TAACTGTTCATCCAAACATT+GGG + chr1_1:48062478-48062497 Msa0025050:intron 30.0%
ATAAAAACTGTCCCAATGTT+TGG - chr1_1:48062492-48062511 None:intergenic 30.0%
!!! TGTTTTTGGCCATATTGTTT+TGG + chr1_1:48062516-48062535 Msa0025050:intron 30.0%
CATGTCAAACCAAAACAATA+TGG - chr1_1:48062528-48062547 None:intergenic 30.0%
!!! GTCTTTGCTTTTTTGTGTTT+TGG + chr1_1:48062567-48062586 Msa0025050:intron 30.0%
!! CAGTTTTTATTTGTCGTTGT+TGG + chr1_1:48062591-48062610 Msa0025050:intron 30.0%
CACTGATGATAAAAAATGTG+TGG + chr1_1:48062784-48062803 Msa0025050:CDS 30.0%
!!! CTTTCATATTTTGGTTGGAT+TGG + chr1_1:48062952-48062971 Msa0025050:CDS 30.0%
! GATAAGAGAAGGATATTTTC+GGG - chr1_1:48063022-48063041 None:intergenic 30.0%
! GATCAATTGTTGATAAGAGA+AGG - chr1_1:48063033-48063052 None:intergenic 30.0%
TTACTGTTAGGAAGAATAAG+AGG - chr1_1:48063085-48063104 None:intergenic 30.0%
!! ATAGTCTTGTCTTTACTGTT+AGG - chr1_1:48063097-48063116 None:intergenic 30.0%
AGAGACACTAAAACATCAAA+TGG + chr1_1:48063136-48063155 Msa0025050:CDS 30.0%
ATATTCAGACAAGACAGTAT+CGG + chr1_1:48063488-48063507 Msa0025050:CDS 30.0%
GTATTATTTGATCCTCATAG+TGG + chr1_1:48063601-48063620 Msa0025050:CDS 30.0%
! ATATTTTCGCTATGTAGAGT+AGG - chr1_1:48063703-48063722 None:intergenic 30.0%
TTTATGTGTTAATAGGTTGC+TGG + chr1_1:48063725-48063744 Msa0025050:intron 30.0%
GCTGGAATTGATTAATTGTA+TGG + chr1_1:48063743-48063762 Msa0025050:intron 30.0%
AACCTTCAAAAATTTAGACG+GGG - chr1_1:48063825-48063844 None:intergenic 30.0%
AAAAATGCTATTCCAGCATA+GGG - chr1_1:48063973-48063992 None:intergenic 30.0%
AAAAAATGCTATTCCAGCAT+AGG - chr1_1:48063974-48063993 None:intergenic 30.0%
TGGGAATTGACTAAATATCA+TGG + chr1_1:48064039-48064058 Msa0025050:intron 30.0%
CAACATTATGAATAAGGCAT+GGG - chr1_1:48064152-48064171 None:intergenic 30.0%
AAAGGCCAACATTATGAATA+AGG - chr1_1:48064158-48064177 None:intergenic 30.0%
!! CACGTTTTCTTGTTTATATG+AGG + chr1_1:48064179-48064198 Msa0025050:intron 30.0%
!! CGTTTTCTTGTTTATATGAG+GGG + chr1_1:48064181-48064200 Msa0025050:intron 30.0%
TAAACATGAATAATGAGTGC+TGG + chr1_1:48064301-48064320 Msa0025050:intron 30.0%
!!! TCTATCTCTGTTTTAGAAGA+CGG - chr1_1:48064442-48064461 None:intergenic 30.0%
TTCTACTTTCTATCAAGACT+GGG - chr1_1:48064507-48064526 None:intergenic 30.0%
TTTCTACTTTCTATCAAGAC+TGG - chr1_1:48064508-48064527 None:intergenic 30.0%
CTAGCAATAATGATGTCAAT+AGG + chr1_1:48064662-48064681 Msa0025050:intron 30.0%
AGTCTTCAAGACATTGTAAA+AGG - chr1_1:48064788-48064807 None:intergenic 30.0%
! TTTTTCCATGTTTCCAACTA+TGG - chr1_1:48064887-48064906 None:intergenic 30.0%
CTTAGTTATGGGTGTATAAT+GGG + chr1_1:48064962-48064981 Msa0025050:intron 30.0%
! ATAATGGGATGTAATTAAGG+TGG + chr1_1:48064977-48064996 Msa0025050:intron 30.0%
! GTAATGATAAGAAGCACATA+AGG + chr1_1:48065003-48065022 Msa0025050:intron 30.0%
TGCAATCACCCTAATTATAT+AGG - chr1_1:48065070-48065089 None:intergenic 30.0%
AATTTCAGTACATGGAAATG+TGG - chr1_1:48065202-48065221 None:intergenic 30.0%
TCAACCTTAATTTCAGTACA+TGG - chr1_1:48065210-48065229 None:intergenic 30.0%
TACTGAAATTAAGGTTGAGT+GGG + chr1_1:48065212-48065231 Msa0025050:intron 30.0%
! TTTTATAAAGCCCAGACTTT+AGG + chr1_1:48065285-48065304 Msa0025050:intron 30.0%
TTTCTGATAAGATCACAGTT+TGG + chr1_1:48065357-48065376 Msa0025050:intron 30.0%
TCCTGTAATTCTAGTCAATT+TGG + chr1_1:48065704-48065723 Msa0025050:intron 30.0%
CCTGTAATTCTAGTCAATTT+GGG + chr1_1:48065705-48065724 Msa0025050:intron 30.0%
AGTCAATTTGGGAAATGATT+TGG + chr1_1:48065716-48065735 Msa0025050:intron 30.0%
GTCAATTTGGGAAATGATTT+GGG + chr1_1:48065717-48065736 Msa0025050:intron 30.0%
!! TTAATTTGTAAGCGAAAGAG+AGG + chr1_1:48065793-48065812 Msa0025050:intron 30.0%
! TAATTTGTAAGCGAAAGAGA+GGG + chr1_1:48065794-48065813 Msa0025050:intron 30.0%
TTGTTGTACTTCTAACATCT+TGG + chr1_1:48066087-48066106 Msa0025050:intron 30.0%
AAATATTATGGTCCATGAGA+TGG + chr1_1:48066194-48066213 Msa0025050:intron 30.0%
CCAATTGCAAACTATAAAGT+TGG - chr1_1:48066224-48066243 None:intergenic 30.0%
! CCAACTTTATAGTTTGCAAT+TGG + chr1_1:48066221-48066240 Msa0025050:intron 30.0%
!!! TTTGGACAGTTTTTTTTTCC+AGG - chr1_1:48066256-48066275 None:intergenic 30.0%
CTTTATCTAATACTCAGTTC+AGG - chr1_1:48066312-48066331 None:intergenic 30.0%
TCATGCAAATCAATTACTTC+AGG + chr1_1:48066381-48066400 Msa0025050:intron 30.0%
GCAAGTTATTATGTTGAAAC+TGG - chr1_1:48066488-48066507 None:intergenic 30.0%
!! AACATAATAACTTGCTTTGC+TGG + chr1_1:48066493-48066512 Msa0025050:intron 30.0%
AAGAAATTTATTACCTTCCG+CGG - chr1_1:48066701-48066720 None:intergenic 30.0%
ATATCTATTGAAGAAATCCC+GGG - chr1_1:48066813-48066832 None:intergenic 30.0%
CATATCTATTGAAGAAATCC+CGG - chr1_1:48066814-48066833 None:intergenic 30.0%
! CTCCATAAGCACTTTATTTA+AGG - chr1_1:48066873-48066892 None:intergenic 30.0%
! GTTGTACTTGTTTAAAGCTA+GGG + chr1_1:48067336-48067355 Msa0025050:three_prime_UTR 30.0%
! TTGTACTTGTTTAAAGCTAG+GGG + chr1_1:48067337-48067356 Msa0025050:three_prime_UTR 30.0%
AGAAGAACGAACAGAATGAT+GGG - chr1_1:48061685-48061704 None:intergenic 35.0%
AAGAAGAACGAACAGAATGA+TGG - chr1_1:48061686-48061705 None:intergenic 35.0%
!! GGATTAGCCATTTAGTGATT+TGG + chr1_1:48061844-48061863 Msa0025050:intron 35.0%
! TGAAGACACAGTTTTCGTTA+GGG - chr1_1:48061953-48061972 None:intergenic 35.0%
! ATGAAGACACAGTTTTCGTT+AGG - chr1_1:48061954-48061973 None:intergenic 35.0%
!! GAGCCATTGGTTTATTATCT+AGG + chr1_1:48062082-48062101 Msa0025050:intron 35.0%
TGCTCAATCCCTAAAATTCA+AGG - chr1_1:48062120-48062139 None:intergenic 35.0%
TTAGGGATTGAGCAACAATT+TGG + chr1_1:48062126-48062145 Msa0025050:intron 35.0%
TAGGGATTGAGCAACAATTT+GGG + chr1_1:48062127-48062146 Msa0025050:intron 35.0%
TAAGCAACCATTTAGACTAC+GGG + chr1_1:48062206-48062225 Msa0025050:intron 35.0%
GAACCTGTGAAAACAACTTA+CGG + chr1_1:48062292-48062311 Msa0025050:intron 35.0%
!!! CGTTGTTGGCTTTATTGTTT+TGG + chr1_1:48062605-48062624 Msa0025050:intron 35.0%
!!! TGTCTTTGCTTTTTTGTGTG+TGG + chr1_1:48062656-48062675 Msa0025050:intron 35.0%
CAAAATCGTTATCTCATCCA+GGG - chr1_1:48062744-48062763 None:intergenic 35.0%
! AACGATTTTGCAACAGATTG+CGG + chr1_1:48062754-48062773 Msa0025050:CDS 35.0%
TTAGACCATTTCAAGCATTC+TGG + chr1_1:48062815-48062834 Msa0025050:CDS 35.0%
ATACAAACATGCTGTCCATT+TGG - chr1_1:48062842-48062861 None:intergenic 35.0%
AAATGGACAGCATGTTTGTA+TGG + chr1_1:48062841-48062860 Msa0025050:CDS 35.0%
!!! TGTATGGTTTTTGAGTACCT+TGG + chr1_1:48062857-48062876 Msa0025050:CDS 35.0%
!!! GTATGGTTTTTGAGTACCTT+GGG + chr1_1:48062858-48062877 Msa0025050:CDS 35.0%
!!! TATGGTTTTTGAGTACCTTG+GGG + chr1_1:48062859-48062878 Msa0025050:CDS 35.0%
! AAGTGCAAGTTAGTTGACTT+TGG + chr1_1:48063430-48063449 Msa0025050:CDS 35.0%
!! ATATGTTTTGAGCTTGCAAC+TGG + chr1_1:48063574-48063593 Msa0025050:CDS 35.0%
ATAGTGGTGACAACTTTGAT+AGG + chr1_1:48063617-48063636 Msa0025050:CDS 35.0%
TAGTGGTGACAACTTTGATA+GGG + chr1_1:48063618-48063637 Msa0025050:CDS 35.0%
!!! GCTGCTGTGTTTTATTTAGT+TGG + chr1_1:48063765-48063784 Msa0025050:intron 35.0%
ATTTAGTTGGTCACGTTGAA+AGG + chr1_1:48063778-48063797 Msa0025050:intron 35.0%
! TTCCCCGTCTAAATTTTTGA+AGG + chr1_1:48063820-48063839 Msa0025050:intron 35.0%
TTCAGTGAGTGGTTTAATTG+GGG - chr1_1:48063943-48063962 None:intergenic 35.0%
CTTCAGTGAGTGGTTTAATT+GGG - chr1_1:48063944-48063963 None:intergenic 35.0%
AAAATGCTATTCCAGCATAG+GGG - chr1_1:48063972-48063991 None:intergenic 35.0%
! TTATAGTTTTCGGTTAACGG+TGG - chr1_1:48064001-48064020 None:intergenic 35.0%
CCAACATTATGAATAAGGCA+TGG - chr1_1:48064153-48064172 None:intergenic 35.0%
! CCATGCCTTATTCATAATGT+TGG + chr1_1:48064150-48064169 Msa0025050:intron 35.0%
TTGCCAGTAACAGTTATATG+CGG - chr1_1:48064234-48064253 None:intergenic 35.0%
! TTTTCTTTGATGTTTGGCGA+GGG - chr1_1:48064548-48064567 None:intergenic 35.0%
AGAAATGTGATGACTAATCG+TGG - chr1_1:48064644-48064663 None:intergenic 35.0%
CATAACTGTAAGTACCAGAA+CGG + chr1_1:48064712-48064731 Msa0025050:intron 35.0%
ATAACTGTAAGTACCAGAAC+GGG + chr1_1:48064713-48064732 Msa0025050:intron 35.0%
ACAATGTCTTGAAGACTTTC+AGG + chr1_1:48064791-48064810 Msa0025050:intron 35.0%
TAGAGAATTGATGCCATAGT+TGG + chr1_1:48064871-48064890 Msa0025050:intron 35.0%
ATGAGATGCAAGCTTAGTTA+TGG + chr1_1:48064950-48064969 Msa0025050:intron 35.0%
TGAGATGCAAGCTTAGTTAT+GGG + chr1_1:48064951-48064970 Msa0025050:intron 35.0%
GCTTAGTTATGGGTGTATAA+TGG + chr1_1:48064961-48064980 Msa0025050:intron 35.0%
GTACTGAAATTAAGGTTGAG+TGG + chr1_1:48065211-48065230 Msa0025050:intron 35.0%
CAAATGCATACCTAAAGTCT+GGG - chr1_1:48065298-48065317 None:intergenic 35.0%
TCAAATGCATACCTAAAGTC+TGG - chr1_1:48065299-48065318 None:intergenic 35.0%
! GGTATGCATTTGATGATTCT+TGG + chr1_1:48065306-48065325 Msa0025050:intron 35.0%
CCTCAACTTGTAAAACAAGA+CGG - chr1_1:48065499-48065518 None:intergenic 35.0%
AACATAGTTACGAAGGACTT+GGG - chr1_1:48065609-48065628 None:intergenic 35.0%
! ATTTTGCAAGTCATCCTTTG+AGG + chr1_1:48065655-48065674 Msa0025050:intron 35.0%
! TTTTGCAAGTCATCCTTTGA+GGG + chr1_1:48065656-48065675 Msa0025050:intron 35.0%
CCCAAATTGACTAGAATTAC+AGG - chr1_1:48065708-48065727 None:intergenic 35.0%
AATTTGTAAGCGAAAGAGAG+GGG + chr1_1:48065795-48065814 Msa0025050:intron 35.0%
! TCCTTTAGTTTAACGGGTAA+TGG + chr1_1:48066011-48066030 Msa0025050:intron 35.0%
!! GCAATCCTCTATTTCTAGAA+TGG + chr1_1:48066036-48066055 Msa0025050:intron 35.0%
! GCATTCCATTCTAGAAATAG+AGG - chr1_1:48066044-48066063 None:intergenic 35.0%
!!! AAAGTTGGTTTTCCATCTCA+TGG - chr1_1:48066209-48066228 None:intergenic 35.0%
!!! ACAGTTTTTTTTTCCAGGCA+TGG - chr1_1:48066251-48066270 None:intergenic 35.0%
!! GGCTGATTATTGTTTTGTTG+AGG + chr1_1:48066402-48066421 Msa0025050:intron 35.0%
!! GTTTTGTTGAGGAAATGGTT+TGG + chr1_1:48066413-48066432 Msa0025050:intron 35.0%
! TTTTACTCGCATTTGTGCTT+TGG + chr1_1:48066585-48066604 Msa0025050:intron 35.0%
GTTCCATCATTAATGCTAAG+TGG - chr1_1:48066664-48066683 None:intergenic 35.0%
! GCATTAATGATGGAACTTCT+TGG + chr1_1:48066668-48066687 Msa0025050:CDS 35.0%
TATAATTCTCAGATCGCACT+AGG + chr1_1:48066776-48066795 Msa0025050:intron 35.0%
ATAATTCTCAGATCGCACTA+GGG + chr1_1:48066777-48066796 Msa0025050:intron 35.0%
CGGGATTTCTTCAATAGATA+TGG + chr1_1:48066812-48066831 Msa0025050:CDS 35.0%
! GCCCTTAAATAAAGTGCTTA+TGG + chr1_1:48066868-48066887 Msa0025050:CDS 35.0%
! AAGTGACATGAGTGACTTTT+TGG + chr1_1:48066919-48066938 Msa0025050:CDS 35.0%
CCTTGGAATACTTTCTTTGA+TGG - chr1_1:48067184-48067203 None:intergenic 35.0%
!! CCATCAAAGAAAGTATTCCA+AGG + chr1_1:48067181-48067200 Msa0025050:CDS 35.0%
CTATCAAGATGAACTACTTG+CGG - chr1_1:48067210-48067229 None:intergenic 35.0%
! GGTTGTACTTGTTTAAAGCT+AGG + chr1_1:48067335-48067354 Msa0025050:three_prime_UTR 35.0%
TGACAAGAGAAACAATCAAC+AGG - chr1_1:48067447-48067466 None:intergenic 35.0%
TCTTGTCAAAGATGTGATGA+TGG + chr1_1:48067459-48067478 Msa0025050:three_prime_UTR 35.0%
TCAATGCTAACAAGGAACAA+AGG - chr1_1:48067485-48067504 None:intergenic 35.0%
CAAACAAGTCAATGCTAACA+AGG - chr1_1:48067493-48067512 None:intergenic 35.0%
!!! ACTTTGCTTTTTTGCCTTCG+CGG - chr1_1:48061401-48061420 None:intergenic 40.0%
!! TTTTGGGTCAAACAAATGGG+TGG + chr1_1:48061477-48061496 Msa0025050:exon 40.0%
AACTGCCCCAAATCACTAAA+TGG - chr1_1:48061854-48061873 None:intergenic 40.0%
! TTTAGTGATTTGGGGCAGTT+TGG + chr1_1:48061854-48061873 Msa0025050:intron 40.0%
AACCAATGGCTCATTTGGAT+TGG - chr1_1:48062074-48062093 None:intergenic 40.0%
AAACAAGCCCGTAGTCTAAA+TGG - chr1_1:48062216-48062235 None:intergenic 40.0%
!! ATGCCGTAAGTTGTTTTCAC+AGG - chr1_1:48062298-48062317 None:intergenic 40.0%
GCAAAATCGTTATCTCATCC+AGG - chr1_1:48062745-48062764 None:intergenic 40.0%
! ATTTTGCAACAGATTGCGGA+GGG + chr1_1:48062758-48062777 Msa0025050:CDS 40.0%
TTGGACCAGAATGCTTGAAA+TGG - chr1_1:48062823-48062842 None:intergenic 40.0%
TTCAAGCATTCTGGTCCAAA+TGG + chr1_1:48062824-48062843 Msa0025050:CDS 40.0%
GAGTTAATAGGTTATCCCCA+AGG - chr1_1:48062877-48062896 None:intergenic 40.0%
! TCACGGATTGCCTATCAATA+TGG + chr1_1:48062916-48062935 Msa0025050:CDS 40.0%
GATTTCCTGGGATCTTTAGA+CGG - chr1_1:48063055-48063074 None:intergenic 40.0%
TCTAAAGATCCCAGGAAATC+TGG + chr1_1:48063055-48063074 Msa0025050:CDS 40.0%
CAGTAAAGACAAGACTATGC+TGG + chr1_1:48063099-48063118 Msa0025050:CDS 40.0%
GATGGTAATCATGAAACCTC+TGG + chr1_1:48063244-48063263 Msa0025050:CDS 40.0%
TCTCTTGCAGAACTTGCATT+CGG - chr1_1:48063286-48063305 None:intergenic 40.0%
CACTAGTAGGTTATCAGATG+CGG + chr1_1:48063327-48063346 Msa0025050:CDS 40.0%
TGGAATGAAGTCAAAAGAGC+AGG + chr1_1:48063351-48063370 Msa0025050:CDS 40.0%
GGAATGAAGTCAAAAGAGCA+GGG + chr1_1:48063352-48063371 Msa0025050:CDS 40.0%
!! TTGACTTTGGTAATGCTTGC+TGG + chr1_1:48063443-48063462 Msa0025050:CDS 40.0%
TTGATCCAAGGATAACCTCT+GGG - chr1_1:48063516-48063535 None:intergenic 40.0%
TTTGATCCAAGGATAACCTC+TGG - chr1_1:48063517-48063536 None:intergenic 40.0%
ATTCTACATCTGCGGATCTT+TGG + chr1_1:48063539-48063558 Msa0025050:CDS 40.0%
TCAAAGTTGTCACCACTATG+AGG - chr1_1:48063616-48063635 None:intergenic 40.0%
GCTTCAGTGAGTGGTTTAAT+TGG - chr1_1:48063945-48063964 None:intergenic 40.0%
GTGCGCATCAAAATCATGTA+TGG + chr1_1:48064081-48064100 Msa0025050:intron 40.0%
TTGTTGTGAAGATGACGTGT+TGG + chr1_1:48064208-48064227 Msa0025050:intron 40.0%
! GTTACTGGCAACATTGATTG+TGG + chr1_1:48064243-48064262 Msa0025050:intron 40.0%
CTCAAGAGACAATAGGCATT+AGG + chr1_1:48064416-48064435 Msa0025050:intron 40.0%
! CTTTTCTTTGATGTTTGGCG+AGG - chr1_1:48064549-48064568 None:intergenic 40.0%
TGACTAATCGTGGAAACACA+TGG - chr1_1:48064634-48064653 None:intergenic 40.0%
AATTGAATAGTCTCCCGTTC+TGG - chr1_1:48064729-48064748 None:intergenic 40.0%
TGATGCCATAGTTGGAAACA+TGG + chr1_1:48064879-48064898 Msa0025050:intron 40.0%
ACTTTCTTACTCTGCTTCAG+TGG + chr1_1:48065032-48065051 Msa0025050:intron 40.0%
TAGGGTGATTGCATGTTGAT+TGG + chr1_1:48065077-48065096 Msa0025050:intron 40.0%
ATCACAGTTTGGCATAAGCA+AGG + chr1_1:48065368-48065387 Msa0025050:intron 40.0%
! GCAAGGAGGGTAAAGTTTTA+TGG + chr1_1:48065385-48065404 Msa0025050:intron 40.0%
TTAACCACACATTCTCAACG+TGG + chr1_1:48065459-48065478 Msa0025050:intron 40.0%
ACACATTCTCAACGTGGAAA+GGG + chr1_1:48065465-48065484 Msa0025050:intron 40.0%
!!! CCGTCTTGTTTTACAAGTTG+AGG + chr1_1:48065496-48065515 Msa0025050:intron 40.0%
!! CCTCTCATGGTTTTTGTTTC+TGG - chr1_1:48065526-48065545 None:intergenic 40.0%
CCAGAAACAAAAACCATGAG+AGG + chr1_1:48065523-48065542 Msa0025050:intron 40.0%
AGGACTTGGGATAGTAGAAT+AGG - chr1_1:48065596-48065615 None:intergenic 40.0%
CAACATAGTTACGAAGGACT+TGG - chr1_1:48065610-48065629 None:intergenic 40.0%
TTCTGGCAACATAGTTACGA+AGG - chr1_1:48065616-48065635 None:intergenic 40.0%
! ATCCTTTGAGGGAGTCAAAA+TGG + chr1_1:48065667-48065686 Msa0025050:intron 40.0%
GGTCAGACTTGAGATTCAAT+TGG + chr1_1:48065738-48065757 Msa0025050:intron 40.0%
TCCATTTAGAAGAGAAGGGT+GGG - chr1_1:48065899-48065918 None:intergenic 40.0%
ATCCATTTAGAAGAGAAGGG+TGG - chr1_1:48065900-48065919 None:intergenic 40.0%
!!! TTTTGATTTCCCAGCCTGAT+TGG + chr1_1:48065930-48065949 Msa0025050:intron 40.0%
TGGATTCTCAAGACAGTGAT+GGG - chr1_1:48065979-48065998 None:intergenic 40.0%
TTGGATTCTCAAGACAGTGA+TGG - chr1_1:48065980-48065999 None:intergenic 40.0%
GCCATTACCCGTTAAACTAA+AGG - chr1_1:48066015-48066034 None:intergenic 40.0%
CATCACACAACATCCTTGTT+TGG - chr1_1:48066274-48066293 None:intergenic 40.0%
TCGCATTTGTGCTTTGGTTA+TGG + chr1_1:48066591-48066610 Msa0025050:intron 40.0%
GGACCACTTAGCATTAATGA+TGG + chr1_1:48066658-48066677 Msa0025050:intron 40.0%
! GTTTGCAGTTAACTTGAGTC+TGG + chr1_1:48066751-48066770 Msa0025050:intron 40.0%
TAATTCTCAGATCGCACTAG+GGG + chr1_1:48066778-48066797 Msa0025050:intron 40.0%
! GTGATTTGAGACATATCCGT+CGG + chr1_1:48066834-48066853 Msa0025050:CDS 40.0%
GTTTCTCAGGAACAAAGTCA+AGG - chr1_1:48066952-48066971 None:intergenic 40.0%
! TGATTAGAAGACGGCATTGA+TGG - chr1_1:48067037-48067056 None:intergenic 40.0%
TACTTCTGACCAGAAGAACA+AGG + chr1_1:48067078-48067097 Msa0025050:CDS 40.0%
CATCTTTGTCCTTGTTCTTC+TGG - chr1_1:48067090-48067109 None:intergenic 40.0%
AGAACAAGGACAAAGATGAG+AGG + chr1_1:48067092-48067111 Msa0025050:CDS 40.0%
GAACAAGGACAAAGATGAGA+GGG + chr1_1:48067093-48067112 Msa0025050:CDS 40.0%
TTTGATGGAGAATGCATGAG+TGG - chr1_1:48067169-48067188 None:intergenic 40.0%
ATCTTGATAGAGCTCTTTCC+TGG + chr1_1:48067220-48067239 Msa0025050:three_prime_UTR 40.0%
TCTTGATAGAGCTCTTTCCT+GGG + chr1_1:48067221-48067240 Msa0025050:three_prime_UTR 40.0%
TAAATACAGTCAAGTCACCC+AGG - chr1_1:48067241-48067260 None:intergenic 40.0%
CAATTCACACGCACATCATT+GGG - chr1_1:48067277-48067296 None:intergenic 40.0%
ACAATTCACACGCACATCAT+TGG - chr1_1:48067278-48067297 None:intergenic 40.0%
!! TTGTTTCCAGGGCTTGTTTT+CGG + chr1_1:48067294-48067313 Msa0025050:three_prime_UTR 40.0%
! TGTTTTCGGAAATGCTGGAT+TGG + chr1_1:48067308-48067327 Msa0025050:three_prime_UTR 40.0%
!! TGTATCCTTATGGTGTTGTC+TGG - chr1_1:48067385-48067404 None:intergenic 40.0%
GAGCTCATGTTGTATCCTTA+TGG - chr1_1:48067395-48067414 None:intergenic 40.0%
TATGTCGTTCAGAGCAAGCT+TGG + chr1_1:48061621-48061640 Msa0025050:CDS 45.0%
! TGATTTGGGGCAGTTTGGAT+TGG + chr1_1:48061859-48061878 Msa0025050:intron 45.0%
AGCCAATCCAAATGAGCCAT+TGG + chr1_1:48062069-48062088 Msa0025050:intron 45.0%
! GACTACGGGCTTGTTTGAAT+TGG + chr1_1:48062220-48062239 Msa0025050:intron 45.0%
TGGAGATTTGCAGAGATACG+TGG + chr1_1:48062676-48062695 Msa0025050:intron 45.0%
! GATTTTGCAACAGATTGCGG+AGG + chr1_1:48062757-48062776 Msa0025050:CDS 45.0%
TTGATCCGTCTAAAGATCCC+AGG + chr1_1:48063047-48063066 Msa0025050:CDS 45.0%
AGATGATTCTACAGCACCAG+AGG - chr1_1:48063263-48063282 None:intergenic 45.0%
!! GAACAAGCTTCTAGTTCTGC+TGG + chr1_1:48063304-48063323 Msa0025050:CDS 45.0%
AGTAGGTTATCAGATGCGGA+TGG + chr1_1:48063331-48063350 Msa0025050:CDS 45.0%
TGACAACTTTGATAGGGACG+AGG + chr1_1:48063624-48063643 Msa0025050:CDS 45.0%
TGGCCGCATATAACTGTTAC+TGG + chr1_1:48064228-48064247 Msa0025050:intron 45.0%
TGGGATGTAATTAAGGTGGC+AGG + chr1_1:48064981-48065000 Msa0025050:intron 45.0%
ACAGTTTGGCATAAGCAAGG+AGG + chr1_1:48065371-48065390 Msa0025050:intron 45.0%
CAGTTTGGCATAAGCAAGGA+GGG + chr1_1:48065372-48065391 Msa0025050:intron 45.0%
GTGGCAGCATACAAAACACA+AGG - chr1_1:48065411-48065430 None:intergenic 45.0%
CTTTCCACGTTGAGAATGTG+TGG - chr1_1:48065466-48065485 None:intergenic 45.0%
CACACATTCTCAACGTGGAA+AGG + chr1_1:48065464-48065483 Msa0025050:intron 45.0%
TTCTCAACGTGGAAAGGGAT+AGG + chr1_1:48065470-48065489 Msa0025050:intron 45.0%
!!! CACCATTTTGACTCCCTCAA+AGG - chr1_1:48065672-48065691 None:intergenic 45.0%
! CTTTGAGGGAGTCAAAATGG+TGG + chr1_1:48065670-48065689 Msa0025050:intron 45.0%
AAGGGTGGGAAGTCATTTGT+GGG - chr1_1:48065885-48065904 None:intergenic 45.0%
TCCCACCCTTCTCTTCTAAA+TGG + chr1_1:48065895-48065914 Msa0025050:intron 45.0%
TTTCCCAGCCTGATTGGATA+AGG + chr1_1:48065936-48065955 Msa0025050:intron 45.0%
!! TAACTTGCTTTGCTGGAGAG+TGG + chr1_1:48066500-48066519 Msa0025050:intron 45.0%
AACTTCTTGGAATGATGCCG+CGG + chr1_1:48066681-48066700 Msa0025050:CDS 45.0%
AATTCTCAGATCGCACTAGG+GGG + chr1_1:48066779-48066798 Msa0025050:intron 45.0%
CTACATCCGTGGATGAATGT+AGG + chr1_1:48066995-48067014 Msa0025050:CDS 45.0%
! ATTGATGGCTCCAAAAGACG+GGG - chr1_1:48067022-48067041 None:intergenic 45.0%
! CATTGATGGCTCCAAAAGAC+GGG - chr1_1:48067023-48067042 None:intergenic 45.0%
! GCATTGATGGCTCCAAAAGA+CGG - chr1_1:48067024-48067043 None:intergenic 45.0%
CCAGGGTTGTGATTAGAAGA+CGG - chr1_1:48067046-48067065 None:intergenic 45.0%
AAGTAGCAGTTTCAGCACCA+GGG - chr1_1:48067063-48067082 None:intergenic 45.0%
TGTGCGTGTGAATTGTTTCC+AGG + chr1_1:48067282-48067301 Msa0025050:three_prime_UTR 45.0%
GTGCGTGTGAATTGTTTCCA+GGG + chr1_1:48067283-48067302 Msa0025050:three_prime_UTR 45.0%
! TTCGGAAATGCTGGATTGGA+TGG + chr1_1:48067312-48067331 Msa0025050:three_prime_UTR 45.0%
! TCGGAAATGCTGGATTGGAT+GGG + chr1_1:48067313-48067332 Msa0025050:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTAATGTTTT+TGG + chr1_1:48061777-48061796 Msa0025050:intron 5.0%
TGGGTCAAACAAATGGGTGG+CGG + chr1_1:48061480-48061499 Msa0025050:exon 50.0%
! GGAGGTGAAATCGCTGCTTT+CGG - chr1_1:48061523-48061542 None:intergenic 50.0%
GATTTCACCTCCGAAGACGA+AGG + chr1_1:48061531-48061550 Msa0025050:CDS 50.0%
!! ATCTTCGGTGCCTTCGTCTT+CGG - chr1_1:48061544-48061563 None:intergenic 50.0%
!! GAAGGTATCGCCGATTCGAA+CGG - chr1_1:48061589-48061608 None:intergenic 50.0%
! GCTCTGAACGACATAACGAC+CGG - chr1_1:48061616-48061635 None:intergenic 50.0%
TCGTTCAGAGCAAGCTTGGT+TGG + chr1_1:48061625-48061644 Msa0025050:CDS 50.0%
CGTTCAGAGCAAGCTTGGTT+GGG + chr1_1:48061626-48061645 Msa0025050:CDS 50.0%
GTTCAGAGCAAGCTTGGTTG+GGG + chr1_1:48061627-48061646 Msa0025050:CDS 50.0%
GGGGTCATTTCTCCACTGTT+TGG + chr1_1:48061646-48061665 Msa0025050:CDS 50.0%
GAGTGCTCAGCATTACACAG+AGG + chr1_1:48062715-48062734 Msa0025050:CDS 50.0%
!! AGAGGAGCACCAGATTTCCT+GGG - chr1_1:48063067-48063086 None:intergenic 50.0%
!! AAGAGGAGCACCAGATTTCC+TGG - chr1_1:48063068-48063087 None:intergenic 50.0%
AAAGCCAAGCAAGCAGCTCA+TGG + chr1_1:48063196-48063215 Msa0025050:CDS 50.0%
ACATCCATGAGCTGCTTGCT+TGG - chr1_1:48063203-48063222 None:intergenic 50.0%
!! GAGAAGGAGGCATCTGAAGA+TGG + chr1_1:48063226-48063245 Msa0025050:CDS 50.0%
!! CTAGTTCTGCTGGCACTAGT+AGG + chr1_1:48063314-48063333 Msa0025050:CDS 50.0%
AAAGAGCAGGGCAACAGAAG+AGG + chr1_1:48063364-48063383 Msa0025050:CDS 50.0%
GCAGTTTCTGTCTCACTGTG+CGG - chr1_1:48063393-48063412 None:intergenic 50.0%
CTTGCACTTGACATCAGCTG+AGG - chr1_1:48063419-48063438 None:intergenic 50.0%
! AGGGGTTTTGCTTCAGTGAG+TGG - chr1_1:48063954-48063973 None:intergenic 50.0%
CTGAAGCAAAACCCCTATGC+TGG + chr1_1:48063958-48063977 Msa0025050:intron 50.0%
ATGGAATGGTACACAGAGCC+AGG + chr1_1:48064058-48064077 Msa0025050:intron 50.0%
TGGAATGGTACACAGAGCCA+GGG + chr1_1:48064059-48064078 Msa0025050:intron 50.0%
!! CATGATTTTGATGCGCACCC+TGG - chr1_1:48064079-48064098 None:intergenic 50.0%
TCAACGTGGAAAGGGATAGG+CGG + chr1_1:48065473-48065492 Msa0025050:intron 50.0%
!! TGTTTCTGGTCTGCCTCTCA+TGG - chr1_1:48065539-48065558 None:intergenic 50.0%
! CAGTTGCCTCGACTTGTTTC+TGG - chr1_1:48065553-48065572 None:intergenic 50.0%
TAGGCGTCTGCATCTTGTTC+AGG - chr1_1:48065577-48065596 None:intergenic 50.0%
TAGGGATGGGGGAATCAATC+AGG - chr1_1:48065769-48065788 None:intergenic 50.0%
TGTAAGCGAAAGAGAGGGGA+AGG + chr1_1:48065799-48065818 Msa0025050:intron 50.0%
AGGGTGGGAAGTCATTTGTG+GGG - chr1_1:48065884-48065903 None:intergenic 50.0%
GAAGGGTGGGAAGTCATTTG+TGG - chr1_1:48065886-48065905 None:intergenic 50.0%
GTGCCTTATCCAATCAGGCT+GGG - chr1_1:48065942-48065961 None:intergenic 50.0%
CAGCCTGATTGGATAAGGCA+CGG + chr1_1:48065941-48065960 Msa0025050:intron 50.0%
CAACCGTGCCTTATCCAATC+AGG - chr1_1:48065947-48065966 None:intergenic 50.0%
TGCAATTGGACAACCATGCC+TGG + chr1_1:48066235-48066254 Msa0025050:intron 50.0%
ATTCTCAGATCGCACTAGGG+GGG + chr1_1:48066780-48066799 Msa0025050:intron 50.0%
CATTCATCCACGGATGTAGC+AGG - chr1_1:48066994-48067013 None:intergenic 50.0%
! GAATGTAGGTCCCCGTCTTT+TGG + chr1_1:48067009-48067028 Msa0025050:CDS 50.0%
CCGTCTTCTAATCACAACCC+TGG + chr1_1:48067043-48067062 Msa0025050:CDS 50.0%
GAAGTAGCAGTTTCAGCACC+AGG - chr1_1:48067064-48067083 None:intergenic 50.0%
CAAGGACAAAGATGAGAGGG+AGG + chr1_1:48067096-48067115 Msa0025050:CDS 50.0%
GTTTCCAATTCCAGCCTCCA+TGG - chr1_1:48067122-48067141 None:intergenic 50.0%
GCATTTCCGAAAACAAGCCC+TGG - chr1_1:48067303-48067322 None:intergenic 50.0%
!! GGGCTTGTTTTCGGAAATGC+TGG + chr1_1:48067303-48067322 Msa0025050:three_prime_UTR 50.0%
! CGGAAATGCTGGATTGGATG+GGG + chr1_1:48067314-48067333 Msa0025050:three_prime_UTR 50.0%
GCAGACACAAAGGAACTAGC+TGG - chr1_1:48067363-48067382 None:intergenic 50.0%
GTGTTGTCTGGCAGACACAA+AGG - chr1_1:48067373-48067392 None:intergenic 50.0%
GTCTGCCAGACAACACCATA+AGG + chr1_1:48067377-48067396 Msa0025050:three_prime_UTR 50.0%
! GAAATCGCTGCTTTCGGTGG+TGG - chr1_1:48061517-48061536 None:intergenic 55.0%
! GGTGAAATCGCTGCTTTCGG+TGG - chr1_1:48061520-48061539 None:intergenic 55.0%
ATCGGCGATACCTTCAGCTC+CGG + chr1_1:48061594-48061613 Msa0025050:CDS 55.0%
GACATAACGACCGGAGCTGA+AGG - chr1_1:48061607-48061626 None:intergenic 55.0%
! TCTCCACTGTTTGGCTCGCT+TGG + chr1_1:48061655-48061674 Msa0025050:CDS 55.0%
! CTCCACTGTTTGGCTCGCTT+GGG + chr1_1:48061656-48061675 Msa0025050:CDS 55.0%
ATCCCAAGCGAGCCAAACAG+TGG - chr1_1:48061661-48061680 None:intergenic 55.0%
GCAAGCAGCTCATGGATGTG+CGG + chr1_1:48063204-48063223 Msa0025050:CDS 55.0%
AGCTCATGGATGTGCGGAGA+AGG + chr1_1:48063210-48063229 Msa0025050:CDS 55.0%
TCATGGATGTGCGGAGAAGG+AGG + chr1_1:48063213-48063232 Msa0025050:CDS 55.0%
!! AAGACAGTATCGGTGCCCAG+AGG + chr1_1:48063498-48063517 Msa0025050:CDS 55.0%
GGCAGACCAGAAACAAGTCG+AGG + chr1_1:48065544-48065563 Msa0025050:intron 55.0%
AAGCGAAAGAGAGGGGAAGG+AGG + chr1_1:48065802-48065821 Msa0025050:intron 55.0%
GGAAGTCATTTGTGGGGGGA+AGG - chr1_1:48065878-48065897 None:intergenic 55.0%
GGTGGGAAGTCATTTGTGGG+GGG - chr1_1:48065882-48065901 None:intergenic 55.0%
GGGTGGGAAGTCATTTGTGG+GGG - chr1_1:48065883-48065902 None:intergenic 55.0%
CGTGCCTTATCCAATCAGGC+TGG - chr1_1:48065943-48065962 None:intergenic 55.0%
TCTTGGAATGATGCCGCGGA+AGG + chr1_1:48066685-48066704 Msa0025050:CDS 55.0%
! ATATCCGTCGGCTGCGATTC+TGG + chr1_1:48066846-48066865 Msa0025050:CDS 55.0%
CCTGAGAAACGACCTACAGC+CGG + chr1_1:48066962-48066981 Msa0025050:CDS 55.0%
!! CGGATGTAGCAGGCATTGAC+CGG - chr1_1:48066984-48067003 None:intergenic 55.0%
GTCAATGCCTGCTACATCCG+TGG + chr1_1:48066984-48067003 Msa0025050:CDS 55.0%
CGGGGACCTACATTCATCCA+CGG - chr1_1:48067004-48067023 None:intergenic 55.0%
CAAAGATGAGAGGGAGGCCA+TGG + chr1_1:48067102-48067121 Msa0025050:CDS 55.0%
TGAACTACTTGCGGCTGCCT+TGG - chr1_1:48067201-48067220 None:intergenic 55.0%
CACGCACATCATTGGGCATG+CGG - chr1_1:48067270-48067289 None:intergenic 55.0%
!! TTCGGTGCCTTCGTCTTCGG+AGG - chr1_1:48061541-48061560 None:intergenic 60.0%
! GGCACCGAAGATTACCGTCG+CGG + chr1_1:48061552-48061571 Msa0025050:CDS 60.0%
ACCGAAGATTACCGTCGCGG+TGG + chr1_1:48061555-48061574 Msa0025050:CDS 60.0%
GCCACCGCGACGGTAATCTT+CGG - chr1_1:48061559-48061578 None:intergenic 60.0%
GGCTACCACGCCGTTCGAAT+CGG + chr1_1:48061576-48061595 Msa0025050:CDS 60.0%
!! TATCGCCGATTCGAACGGCG+TGG - chr1_1:48061584-48061603 None:intergenic 60.0%
GCATTACACAGAGGCTGCCC+TGG + chr1_1:48062724-48062743 Msa0025050:CDS 60.0%
CGGTGCCCAGAGGTTATCCT+TGG + chr1_1:48063508-48063527 Msa0025050:CDS 60.0%
!! CACTAGGGGGGCGTTATTCC+CGG + chr1_1:48066792-48066811 Msa0025050:CDS 60.0%
!! ACTAGGGGGGCGTTATTCCC+GGG + chr1_1:48066793-48066812 Msa0025050:CDS 60.0%
CCGGCTGTAGGTCGTTTCTC+AGG - chr1_1:48066965-48066984 None:intergenic 60.0%
!! AGCAGGCATTGACCGGCTGT+AGG - chr1_1:48066977-48066996 None:intergenic 60.0%
AGATGAGAGGGAGGCCATGG+AGG + chr1_1:48067105-48067124 Msa0025050:CDS 60.0%
GAGGCCATGGAGGCTGGAAT+TGG + chr1_1:48067115-48067134 Msa0025050:CDS 60.0%
AGGGCCAGAATCGCAGCCGA+CGG - chr1_1:48066853-48066872 None:intergenic 65.0%
GAGAGGGAGGCCATGGAGGC+TGG + chr1_1:48067109-48067128 Msa0025050:CDS 70.0%
CGGCGTGGTAGCCACCGCGA+CGG - chr1_1:48061569-48061588 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48061335 48067603 48061335 ID=Msa0025050;Name=Msa0025050
chr1_1 mRNA 48061335 48067603 48061335 ID=Msa0025050-mRNA-1;Parent=Msa0025050;Name=Msa0025050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=157|1|1|1|1|1|4|387|544
chr1_1 exon 48061335 48061692 48061335 ID=Msa0025050-mRNA-1:exon:13713;Parent=Msa0025050-mRNA-1
chr1_1 exon 48062689 48063645 48062689 ID=Msa0025050-mRNA-1:exon:13714;Parent=Msa0025050-mRNA-1
chr1_1 exon 48066659 48066706 48066659 ID=Msa0025050-mRNA-1:exon:13715;Parent=Msa0025050-mRNA-1
chr1_1 exon 48066788 48067603 48066788 ID=Msa0025050-mRNA-1:exon:13716;Parent=Msa0025050-mRNA-1
chr1_1 five_prime_UTR 48061335 48061491 48061335 ID=Msa0025050-mRNA-1:five_prime_utr;Parent=Msa0025050-mRNA-1
chr1_1 CDS 48061492 48061692 48061492 ID=Msa0025050-mRNA-1:cds;Parent=Msa0025050-mRNA-1
chr1_1 CDS 48062689 48063645 48062689 ID=Msa0025050-mRNA-1:cds;Parent=Msa0025050-mRNA-1
chr1_1 CDS 48066659 48066706 48066659 ID=Msa0025050-mRNA-1:cds;Parent=Msa0025050-mRNA-1
chr1_1 CDS 48066788 48067216 48066788 ID=Msa0025050-mRNA-1:cds;Parent=Msa0025050-mRNA-1
chr1_1 three_prime_UTR 48067217 48067603 48067217 ID=Msa0025050-mRNA-1:three_prime_utr;Parent=Msa0025050-mRNA-1
Gene Sequence

>Msa0025050

ATGGGTGGCGGACACGACGATACCACCACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGCACCGAAGATTACCGTCGCGGTGGCTACCACGCCGTTCGAATCGGCGATACCTTCAGCTCCGGTCGTTATGTCGTTCAGAGCAAGCTTGGTTGGGGTCATTTCTCCACTGTTTGGCTCGCTTGGGATTCCCATCATTCTAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCATTACACAGAGGCTGCCCTGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGAGACACTGATGATAAAAAATGTGTGGTCAAGCTTTTAGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAGTACCTTGGGGATAACCTATTAACTCTTATTAAGTATAGTGATTATCACGGATTGCCTATCAATATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTAAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAAGATCCCAGGAAATCTGGTGCTCCTCTTATTCTTCCTAACAGTAAAGACAAGACTATGCTGGAGTCAACGACTGCAAGAGACACTAAAACATCAAATGGAGATTTTATTAAGAATCATAAGAAAAATATTAAGAGAAAAGCCAAGCAAGCAGCTCATGGATGTGCGGAGAAGGAGGCATCTGAAGATGGTAATCATGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCAAGAGAACAAGCTTCTAGTTCTGCTGGCACTAGTAGGTTATCAGATGCGGATGGAATGAAGTCAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCACAGTGAGACAGAAACTGCTTGCCTCAGCTGATGTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATTCAGACAAGACAGTATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCTGCGGATCTTTGGTCATTTGCTTGCATATGTTTTGAGCTTGCAACTGGAGATGTATTATTTGATCCTCATAGTGGTGACAACTTTGATAGGGACGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCGCGGAAGATCGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGATATGGTGATTTGAGACATATCCGTCGGCTGCGATTCTGGCCCTTAAATAAAGTGCTTATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAACGACCTACAGCCGGTCAATGCCTGCTACATCCGTGGATGAATGTAGGTCCCCGTCTTTTGGAGCCATCAATGCCGTCTTCTAATCACAACCCTGGTGCTGAAACTGCTACTTCTGACCAGAAGAACAAGGACAAAGATGAGAGGGAGGCCATGGAGGCTGGAATTGGAAACATTGCTATCAATTCAGATTCTAAACCACTCATGCATTCTCCATCAAAGAAAGTATTCCAAGGCAGCCGCAAGTAG
Protein sequence

>Msa0025050

MGGGHDDTTTESSDFTSEDEGTEDYRRGGYHAVRIGDTFSSGRYVVQSKLGWGHFSTVWLAWDSHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYHGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTTARDTKTSNGDFIKNHKKNIKRKAKQAAHGCAEKEASEDGNHETSGAVESSPNASSAREQASSSAGTSRLSDADGMKSKEQGNRRGSRTVRQKLLASADVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNVGPRLLEPSMPSSNHNPGAETATSDQKNKDKDEREAMEAGIGNIAINSDSKPLMHSPSKKVFQGSRK*