AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072580 MtrunA17_Chr1g0179611 98.352 546 7 1 1 544 1 546 0.0 1122
Msa0072580 MtrunA17_Chr4g0027671 67.170 530 166 2 12 533 7 536 0.0 758
Msa0072580 MtrunA17_Chr2g0320631 68.550 531 148 5 11 530 7 529 0.0 749
Msa0072580 MtrunA17_Chr5g0407121 53.509 456 154 4 23 477 17 415 8.25e-172 493
Msa0072580 MtrunA17_Chr8g0370321 52.203 454 157 4 23 476 17 410 9.01e-169 485
Msa0072580 MtrunA17_Chr3g0116701 38.608 158 90 4 29 186 80 230 3.95e-27 114
Msa0072580 MtrunA17_Chr3g0116701 30.899 178 88 6 317 476 259 419 2.14e-17 84.7
Msa0072580 MtrunA17_Chr3g0139371 36.250 160 95 4 27 186 58 210 7.81e-27 112
Msa0072580 MtrunA17_Chr3g0139371 32.955 176 91 3 317 478 238 400 2.59e-21 96.3
Msa0072580 MtrunA17_Chr4g0058241 37.580 157 91 4 29 185 84 233 1.57e-26 112
Msa0072580 MtrunA17_Chr4g0058241 30.857 175 86 6 317 473 263 420 7.05e-16 80.1
Msa0072580 MtrunA17_Chr3g0123491 32.941 170 104 5 19 185 66 228 4.72e-24 104
Msa0072580 MtrunA17_Chr3g0123491 33.654 104 63 1 317 420 260 357 1.98e-13 72.4
Msa0072580 MtrunA17_Chr8g0369241 40.136 147 82 3 41 186 136 277 4.27e-23 103
Msa0072580 MtrunA17_Chr8g0369241 38.333 120 64 3 308 423 273 386 9.62e-16 80.9
Msa0072580 MtrunA17_Chr6g0480541 29.775 178 109 5 306 476 1032 1200 2.50e-19 92.4
Msa0072580 MtrunA17_Chr6g0480541 33.125 160 96 4 30 185 886 1038 3.73e-15 79.0
Msa0072580 MtrunA17_Chr5g0437131 29.944 177 110 5 306 476 537 705 5.73e-18 87.4
Msa0072580 MtrunA17_Chr5g0437131 33.548 155 94 3 35 185 394 543 7.80e-15 77.8
Msa0072580 MtrunA17_Chr1g0210061 32.500 160 97 5 29 183 596 749 3.36e-17 85.5
Msa0072580 MtrunA17_Chr1g0210061 31.720 186 102 5 308 476 748 925 3.02e-15 79.3
Msa0072580 MtrunA17_Chr4g0065851 34.254 181 92 9 306 477 155 317 2.96e-12 69.3
Msa0072580 MtrunA17_Chr4g0045841 32.292 192 107 9 289 476 168 340 7.27e-12 67.4
Msa0072580 MtrunA17_Chr8g0348481 33.898 177 87 9 308 476 169 323 4.43e-11 64.7
Msa0072580 MtrunA17_Chr8g0387401 28.870 239 132 9 289 521 165 371 5.83e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072580 AT3G53030.1 72.368 532 124 6 10 535 8 522 0.0 786
Msa0072580 AT3G44850.1 69.392 526 145 5 9 524 10 529 0.0 753
Msa0072580 AT5G22840.1 69.349 522 147 4 10 528 11 522 0.0 751
Msa0072580 AT4G35500.1 53.304 454 158 4 25 478 19 418 6.09e-172 493
Msa0072580 AT2G17530.1 51.101 454 167 3 25 478 19 417 1.99e-163 472
Msa0072580 AT2G17530.3 51.101 454 167 3 25 478 19 417 1.99e-163 472
Msa0072580 AT4G35500.2 51.429 455 166 5 25 478 19 419 9.03e-163 470
Msa0072580 AT2G17530.2 49.868 379 135 3 25 403 19 342 2.47e-124 369
Msa0072580 AT4G24740.4 37.209 172 100 5 29 200 84 247 2.93e-28 115
Msa0072580 AT4G24740.3 37.209 172 100 5 29 200 84 247 4.70e-28 115
Msa0072580 AT4G24740.3 35.833 120 70 2 284 403 231 343 2.02e-14 75.1
Msa0072580 AT4G24740.7 37.209 172 100 5 29 200 46 209 7.94e-28 115
Msa0072580 AT4G24740.7 29.858 211 112 7 284 476 193 385 8.63e-18 85.9
Msa0072580 AT4G24740.1 37.209 172 100 5 29 200 84 247 1.13e-27 115
Msa0072580 AT4G24740.1 29.858 211 112 7 284 476 231 423 9.37e-18 86.3
Msa0072580 AT4G32660.2 35.625 160 96 3 27 186 55 207 2.43e-26 110
Msa0072580 AT4G32660.2 42.574 101 51 3 317 416 235 329 2.49e-15 78.2
Msa0072580 AT4G32660.3 35.625 160 96 3 27 186 47 199 3.33e-26 110
Msa0072580 AT4G32660.3 34.706 170 93 5 317 476 227 388 8.30e-18 85.9
Msa0072580 AT4G32660.1 35.625 160 96 3 27 186 55 207 3.67e-26 110
Msa0072580 AT4G32660.1 34.706 170 93 5 317 476 235 396 9.34e-18 85.9
Msa0072580 AT3G53570.1 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0072580 AT3G53570.1 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0072580 AT3G53570.4 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0072580 AT3G53570.4 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0072580 AT3G53570.2 36.471 170 98 5 20 186 89 251 6.92e-26 111
Msa0072580 AT3G53570.2 31.844 179 88 5 316 476 281 443 1.42e-17 85.9
Msa0072580 AT3G53570.3 36.471 170 98 5 20 186 75 237 7.44e-26 110
Msa0072580 AT3G53570.3 31.844 179 88 5 316 476 267 429 1.67e-17 85.5
Msa0072580 AT3G53570.5 36.471 170 98 5 20 186 75 237 7.44e-26 110
Msa0072580 AT3G53570.5 31.844 179 88 5 316 476 267 429 1.67e-17 85.5
Msa0072580 AT4G24740.5 37.748 151 87 4 50 200 1 144 1.32e-24 103
Msa0072580 AT4G24740.5 35.833 120 70 2 284 403 128 240 1.23e-14 74.3
Msa0072580 AT4G24740.6 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0072580 AT4G24740.6 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0072580 AT4G24740.9 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0072580 AT4G24740.9 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0072580 AT4G24740.2 37.748 151 87 4 50 200 1 144 3.18e-24 103
Msa0072580 AT4G24740.2 29.858 211 112 7 284 476 128 320 6.65e-18 85.5
Msa0072580 AT5G35980.1 40.000 150 84 3 43 191 121 265 4.74e-24 107
Msa0072580 AT5G35980.1 38.525 122 65 4 306 423 253 368 3.09e-15 79.7
Msa0072580 AT5G35980.3 38.415 164 91 4 33 191 72 230 4.78e-24 107
Msa0072580 AT5G35980.3 38.525 122 65 4 306 423 218 333 4.08e-15 79.3
Msa0072580 AT5G35980.2 38.415 164 91 4 33 191 107 265 7.70e-24 106
Msa0072580 AT5G35980.2 38.525 122 65 4 306 423 253 368 4.08e-15 79.0
Msa0072580 AT1G73460.2 30.726 179 108 5 306 477 992 1161 6.94e-21 97.8
Msa0072580 AT1G73460.2 32.886 149 91 3 41 185 855 998 3.29e-13 73.2
Msa0072580 AT1G73460.1 30.726 179 108 5 306 477 992 1161 6.94e-21 97.8
Msa0072580 AT1G73460.1 32.886 149 91 3 41 185 855 998 3.29e-13 73.2
Msa0072580 AT1G73450.1 30.726 179 108 5 306 477 975 1144 8.67e-21 97.4
Msa0072580 AT1G73450.1 32.886 149 91 3 41 185 838 981 3.69e-13 73.2
Msa0072580 AT4G24740.10 29.858 211 112 7 284 476 25 217 4.36e-19 86.7
Msa0072580 AT4G24740.8 29.858 211 112 7 284 476 25 217 4.36e-19 86.7
Msa0072580 AT2G40120.1 31.073 177 110 5 306 477 395 564 9.94e-19 90.1
Msa0072580 AT2G40120.1 33.548 155 94 3 35 185 252 401 1.47e-14 77.0
Msa0072580 AT4G32660.4 34.706 170 93 5 317 476 123 284 4.74e-18 85.1
Msa0072580 AT4G32660.4 36.364 99 57 2 88 186 3 95 7.47e-14 72.8
Msa0072580 AT3G17750.1 29.545 176 112 4 306 476 961 1129 7.15e-18 88.2
Msa0072580 AT3G17750.1 32.500 160 97 4 30 185 815 967 5.97e-14 75.5
Msa0072580 AT3G25840.1 31.250 160 99 5 29 183 603 756 3.11e-15 79.7
Msa0072580 AT3G25840.1 32.571 175 97 5 317 476 764 932 4.26e-14 75.9
Msa0072580 AT3G53640.1 33.146 178 93 7 317 476 470 639 3.82e-15 79.0
Msa0072580 AT3G53640.1 30.625 160 100 5 29 183 309 462 5.18e-13 72.0
Msa0072580 AT1G13350.1 30.625 160 100 5 29 183 428 581 6.28e-15 78.6
Msa0072580 AT1G13350.1 30.682 176 100 5 317 476 589 758 1.85e-14 77.0
Msa0072580 AT3G25840.2 31.250 160 99 5 29 183 341 494 7.40e-15 78.2
Msa0072580 AT3G25840.2 32.571 175 97 5 317 476 502 670 4.36e-14 75.5
Msa0072580 AT1G13350.2 30.625 160 100 5 29 183 455 608 8.86e-15 78.2
Msa0072580 AT1G13350.2 30.682 176 100 5 317 476 616 785 2.68e-14 76.6
Msa0072580 AT1G13350.3 30.625 160 100 5 29 183 501 654 1.57e-14 77.4
Msa0072580 AT1G13350.3 30.682 176 100 5 317 476 662 831 3.85e-14 75.9
Msa0072580 AT1G73670.1 30.526 190 106 9 306 486 220 392 3.32e-12 69.7
Msa0072580 AT3G59790.1 29.333 225 126 9 289 510 173 367 7.42e-12 67.8
Msa0072580 AT2G30980.1 31.148 183 101 8 315 494 211 371 4.97e-11 65.5

Find 168 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATAAGCACTTTATTTA+AGG 0.062791 1_2:-45632064 None:intergenic
AGAGATATGCTTTCATATTT+TGG 0.133189 1_2:+45628139 Msa0072580:CDS
CATCTTTGTCCTTGTTCTTC+TGG 0.137125 1_2:-45632281 None:intergenic
CATCATAATTGTATTCTTAA+TGG 0.186731 1_2:-45632612 None:intergenic
ATCTTGATAGAGCTCTTTCC+TGG 0.228074 1_2:+45632414 Msa0072580:three_prime_UTR
CGGGATTTCTTCAATAGATA+TGG 0.256557 1_2:+45632006 Msa0072580:CDS
AGTGAAAGAAAAGAGAAAAT+TGG 0.271820 1_2:-45626640 None:intergenic
GCCCTTAAATAAAGTGCTTA+TGG 0.273324 1_2:+45632062 Msa0072580:CDS
GAATGTAGGTCCCCGTCTTT+TGG 0.274592 1_2:+45632203 Msa0072580:CDS
GCATTAATGATGGAACTTCT+TGG 0.282888 1_2:+45631862 Msa0072580:CDS
TATACTTAATAAGAGTTAAT+AGG 0.290620 1_2:-45628082 None:intergenic
TCTCCACTGTTTGGCTCGCT+TGG 0.295410 1_2:+45626862 Msa0072580:CDS
CCTTGGAATACTTTCTTTGA+TGG 0.309821 1_2:-45632375 None:intergenic
TTAGACCATTTCAAGCATTC+TGG 0.313545 1_2:+45628011 Msa0072580:CDS
TCCATAAGCACTTTATTTAA+GGG 0.317347 1_2:-45632063 None:intergenic
ATTCTACATCTGCGGATCTT+TGG 0.322906 1_2:+45628735 Msa0072580:CDS
TCACGGATTGCCTATCAATA+TGG 0.323581 1_2:+45628112 Msa0072580:CDS
TTGACTTTGGTAATGCTTGC+TGG 0.327850 1_2:+45628639 Msa0072580:CDS
ATAGTCTTGTCTTTACTGTT+AGG 0.332521 1_2:-45628290 None:intergenic
CGTTCAGAGCAAGCTTGGTT+GGG 0.339812 1_2:+45626833 Msa0072580:CDS
GGGGTCATTTCTCCACTGTT+TGG 0.341167 1_2:+45626853 Msa0072580:CDS
ATATCCGTCGGCTGCGATTC+TGG 0.344849 1_2:+45632040 Msa0072580:CDS
CTCCACTGTTTGGCTCGCTT+GGG 0.347766 1_2:+45626863 Msa0072580:CDS
ATCTTCTGTGCCTTCGTCTT+CGG 0.358366 1_2:-45626748 None:intergenic
AAGAGGAGCACCAGATTTCC+TGG 0.363522 1_2:-45628261 None:intergenic
GAGGCCATGGAGGCTGGAAT+TGG 0.365219 1_2:+45632309 Msa0072580:CDS
ATCAACAATTGATCCGTCTA+AGG 0.368658 1_2:+45628235 Msa0072580:CDS
ATACAAACATGCTGTCCATT+TGG 0.376683 1_2:-45628035 None:intergenic
TGTGCGTGTGAATTGTTTCC+AGG 0.377617 1_2:+45632476 Msa0072580:three_prime_UTR
ATAGTGGTGACAACTTTGAT+AGG 0.377741 1_2:+45628813 Msa0072580:CDS
GTTGTACTTGTTTAAAGCTA+GGG 0.385520 1_2:+45632530 Msa0072580:three_prime_UTR
ATCTCTTTAACCATATTGAT+AGG 0.403343 1_2:-45628122 None:intergenic
GAGAGGGAGGCCATGGAGGC+TGG 0.404591 1_2:+45632303 Msa0072580:CDS
TGATTAGAAGACGGCATTGA+TGG 0.409832 1_2:-45632228 None:intergenic
GAGCTCATGTTGTATCCTTA+TGG 0.410716 1_2:-45632586 None:intergenic
TCTAAGGATCCCAGGAAATC+TGG 0.413304 1_2:+45628251 Msa0072580:CDS
GGAGGTGAAATCGCTGCTTT+CGG 0.420256 1_2:-45626727 None:intergenic
AAATGGACAGCATGTTTGTA+TGG 0.420622 1_2:+45628037 Msa0072580:CDS
ACAATTCACACGCACATCAT+TGG 0.423467 1_2:-45632469 None:intergenic
TTCAAGCATTCTGGTCCAAA+TGG 0.428400 1_2:+45628020 Msa0072580:CDS
AGAGACACTAAAACATCAAA+TGG 0.428919 1_2:+45628332 Msa0072580:CDS
CTAGTTCTGCTGGCACTAGT+AGG 0.430061 1_2:+45628510 Msa0072580:CDS
TTCGGAAATGCTGGATTGGA+TGG 0.433404 1_2:+45632506 Msa0072580:three_prime_UTR
ACATCCATGAGCTGCTTGCT+TGG 0.434213 1_2:-45628396 None:intergenic
TGAACTACTTGCGGCTGCCT+TGG 0.440976 1_2:-45632392 None:intergenic
CAATTCACACGCACATCATT+GGG 0.443168 1_2:-45632468 None:intergenic
GGTTGTACTTGTTTAAAGCT+AGG 0.446727 1_2:+45632529 Msa0072580:three_prime_UTR
TTTAATTGAATAATTCAGTA+AGG 0.451098 1_2:-45626578 None:intergenic
TTGGACCAGAATGCTTGAAA+TGG 0.452574 1_2:-45628016 None:intergenic
CGGTGCCCAGAGGTTATCCT+TGG 0.454662 1_2:+45628704 Msa0072580:CDS
CATATATCAAGAATATCATT+CGG 0.456043 1_2:-45632743 None:intergenic
GGCTACCACGCCGTTCGAAT+CGG 0.458904 1_2:+45626783 Msa0072580:CDS
TCTCTTGCAGAACTTGCATT+CGG 0.467917 1_2:-45628479 None:intergenic
GCATTACACAGAGGCTGCCC+TGG 0.469898 1_2:+45627920 Msa0072580:CDS
CGGAAATGCTGGATTGGATG+GGG 0.471040 1_2:+45632508 Msa0072580:three_prime_UTR
TCGGAAATGCTGGATTGGAT+GGG 0.472444 1_2:+45632507 Msa0072580:three_prime_UTR
CCGGCTGTAGGTCGTTTCTC+AGG 0.474020 1_2:-45632156 None:intergenic
GAAGTAGCAGTTTCAGCACC+AGG 0.474460 1_2:-45632255 None:intergenic
TGTATCCTTATGGTGTTGTC+TGG 0.480109 1_2:-45632576 None:intergenic
CATATCTATTGAAGAAATCC+CGG 0.482137 1_2:-45632005 None:intergenic
CAAAGATGAGAGGGAGGCCA+TGG 0.484725 1_2:+45632296 Msa0072580:CDS
CATTGATGGCTCCAAAAGAC+GGG 0.487038 1_2:-45632214 None:intergenic
TCGTTCAGAGCAAGCTTGGT+TGG 0.487627 1_2:+45626832 Msa0072580:CDS
AGCTCATGGATGTGCGGAGA+AGG 0.490342 1_2:+45628406 Msa0072580:CDS
GAAATCGCTGCTTTCGGTGG+TGG 0.490996 1_2:-45626721 None:intergenic
GCAAAATCGTTATCTCATCC+AGG 0.491981 1_2:-45627938 None:intergenic
AAGTGCAAGTTAGTTGACTT+TGG 0.494805 1_2:+45628626 Msa0072580:CDS
TCTTGTCAAAGATGTGATGA+TGG 0.495812 1_2:+45632653 Msa0072580:three_prime_UTR
TGACAAGAGAAACAATCAAC+AGG 0.498250 1_2:-45632638 None:intergenic
TTCAATTAAATTAACCGCGA+AGG 0.498950 1_2:+45626591 Msa0072580:five_prime_UTR
TTTGATCCAAGGATAACCTC+TGG 0.500060 1_2:-45628710 None:intergenic
CGGATGTAGCAGGCATTGAC+CGG 0.500642 1_2:-45632175 None:intergenic
TGGAATGAAGTCAAAAGAGC+AGG 0.504504 1_2:+45628547 Msa0072580:CDS
AAAGCCAAGCAAGCAGCTCA+TGG 0.505034 1_2:+45628392 Msa0072580:CDS
GTTCAGAGCAAGCTTGGTTG+GGG 0.505953 1_2:+45626834 Msa0072580:CDS
CAGTAAAGACAAGACTATGC+TGG 0.508183 1_2:+45628295 Msa0072580:CDS
AAGAAGAACGAACAGAATGA+TGG 0.508503 1_2:-45626890 None:intergenic
TATAATTCTCAGATCGCACT+AGG 0.509453 1_2:+45631970 Msa0072580:intron
GAACAAGCTTCTAGTTCTGC+TGG 0.516084 1_2:+45628500 Msa0072580:CDS
CATTCATCCACGGATGTAGC+AGG 0.517627 1_2:-45632185 None:intergenic
TATGTCGTTCAGAGCAAGCT+TGG 0.518360 1_2:+45626828 Msa0072580:CDS
GTTTCCAATTCCAGCCTCCA+TGG 0.523041 1_2:-45632313 None:intergenic
TTACTGTTAGGAAGAATAAG+AGG 0.526154 1_2:-45628278 None:intergenic
GCATTTCCGAAAACAAGCCC+TGG 0.526381 1_2:-45632494 None:intergenic
TTCTGTGCCTTCGTCTTCGG+AGG 0.532445 1_2:-45626745 None:intergenic
TCTTGATAGAGCTCTTTCCT+GGG 0.533810 1_2:+45632415 Msa0072580:three_prime_UTR
GTCTGCCAGACAACACCATA+AGG 0.538235 1_2:+45632571 Msa0072580:three_prime_UTR
GACATAACGACCGGAGCTGA+AGG 0.539436 1_2:-45626811 None:intergenic
AAAGAGCAGGGCAACAGAAG+AGG 0.541507 1_2:+45628560 Msa0072580:CDS
ATCGGCGATACCTTCAGCTC+CGG 0.545934 1_2:+45626801 Msa0072580:CDS
GTCAATGCCTGCTACATCCG+TGG 0.547156 1_2:+45632178 Msa0072580:CDS
GAACAAGGACAAAGATGAGA+GGG 0.551701 1_2:+45632287 Msa0072580:CDS
GAGAAGGAGGCATCTGAAGA+TGG 0.552642 1_2:+45628422 Msa0072580:CDS
CTACATCCGTGGATGAATGT+AGG 0.555309 1_2:+45632189 Msa0072580:CDS
GCATTGATGGCTCCAAAAGA+CGG 0.555544 1_2:-45632215 None:intergenic
GGACCACTTAGCATTAATGA+TGG 0.555688 1_2:+45631852 Msa0072580:intron
GATTTCCTGGGATCCTTAGA+CGG 0.556902 1_2:-45628248 None:intergenic
GATCAATTGTTGATAAGAGA+AGG 0.558128 1_2:-45628226 None:intergenic
TCAAAGTTGTCACCACTATG+AGG 0.558782 1_2:-45628809 None:intergenic
GTTCCATCATTAATGCTAAG+TGG 0.559588 1_2:-45631855 None:intergenic
ATATCTATTGAAGAAATCCC+GGG 0.566218 1_2:-45632004 None:intergenic
TTGATCCGTCTAAGGATCCC+AGG 0.566867 1_2:+45628243 Msa0072580:CDS
GTATTATTTGATCCTCATAG+TGG 0.567179 1_2:+45628797 Msa0072580:CDS
ATTAAGTATAGTGATTATCA+CGG 0.569731 1_2:+45628095 Msa0072580:CDS
AAGAAATTTATTACCTTCCG+CGG 0.571931 1_2:-45631892 None:intergenic
GTGCGTGTGAATTGTTTCCA+GGG 0.573945 1_2:+45632477 Msa0072580:three_prime_UTR
CACTAGTAGGTTATCAGATG+CGG 0.576983 1_2:+45628523 Msa0072580:CDS
CAAGGACAAAGATGAGAGGG+AGG 0.580802 1_2:+45632290 Msa0072580:CDS
TGGGTCAAACAAATGGGTGG+CGG 0.584188 1_2:+45626687 Msa0072580:exon
TCTTGGAATGATGCCGCGGA+AGG 0.584206 1_2:+45631879 Msa0072580:CDS
GTGAATGATGAGGATGATGA+AGG 0.584654 1_2:+45626527 None:intergenic
CTATCAAGATGAACTACTTG+CGG 0.587404 1_2:-45632401 None:intergenic
TTGATCCAAGGATAACCTCT+GGG 0.587839 1_2:-45628709 None:intergenic
AGAAGAACGAACAGAATGAT+GGG 0.588817 1_2:-45626889 None:intergenic
GAAGGTATCGCCGATTCGAA+CGG 0.589832 1_2:-45626793 None:intergenic
TTGTACTTGTTTAAAGCTAG+GGG 0.591515 1_2:+45632531 Msa0072580:three_prime_UTR
GGTGAAATCGCTGCTTTCGG+TGG 0.592150 1_2:-45626724 None:intergenic
CACGCACATCATTGGGCATG+CGG 0.592850 1_2:-45632461 None:intergenic
TCATGGATGTGCGGAGAAGG+AGG 0.595831 1_2:+45628409 Msa0072580:CDS
CAAACAAGTCAATGCTAACA+AGG 0.601606 1_2:-45632684 None:intergenic
GCAGACACAAAGGAACTAGC+TGG 0.601970 1_2:-45632554 None:intergenic
CCTGAGAAACGACCTACAGC+CGG 0.605154 1_2:+45632156 Msa0072580:CDS
GATGGTAATCATGAAACCTC+TGG 0.606715 1_2:+45628440 Msa0072580:CDS
ATAATTCTCAGATCGCACTA+GGG 0.611148 1_2:+45631971 Msa0072580:intron
AGAGGAGCACCAGATTTCCT+GGG 0.614355 1_2:-45628260 None:intergenic
AGATGATTCTACAGCACCAG+AGG 0.614399 1_2:-45628456 None:intergenic
TAGTGGTGACAACTTTGATA+GGG 0.616977 1_2:+45628814 Msa0072580:CDS
AAGTAGCAGTTTCAGCACCA+GGG 0.617453 1_2:-45632254 None:intergenic
GTGTTGTCTGGCAGACACAA+AGG 0.618806 1_2:-45632564 None:intergenic
ATCCCAAGCGAGCCAAACAG+TGG 0.619472 1_2:-45626865 None:intergenic
TTTGATGGAGAATGCATGAG+TGG 0.621786 1_2:-45632360 None:intergenic
CAAAATCGTTATCTCATCCA+GGG 0.625815 1_2:-45627937 None:intergenic
CCGTCTTCTAATCACAACCC+TGG 0.626806 1_2:+45632237 Msa0072580:CDS
CCATCAAAGAAAGTATTCCA+AGG 0.627091 1_2:+45632375 Msa0072580:CDS
ATATTCAGACAAGACAGTAT+CGG 0.630386 1_2:+45628684 Msa0072580:CDS
TACTTCTGACCAGAAGAACA+AGG 0.631653 1_2:+45632272 Msa0072580:CDS
AGGGCCAGAATCGCAGCCGA+CGG 0.635004 1_2:-45632044 None:intergenic
AGAACAAGGACAAAGATGAG+AGG 0.640119 1_2:+45632286 Msa0072580:CDS
GCTCTGAACGACATAACGAC+CGG 0.640589 1_2:-45626820 None:intergenic
ATCAAAATATTCTACATCTG+CGG 0.641197 1_2:+45628727 Msa0072580:CDS
AGATGAGAGGGAGGCCATGG+AGG 0.643015 1_2:+45632299 Msa0072580:CDS
AACTTCTTGGAATGATGCCG+CGG 0.644175 1_2:+45631875 Msa0072580:CDS
CCAGGGTTGTGATTAGAAGA+CGG 0.645495 1_2:-45632237 None:intergenic
AGTAGGTTATCAGATGCGGA+TGG 0.646147 1_2:+45628527 Msa0072580:CDS
CGGGGACCTACATTCATCCA+CGG 0.647503 1_2:-45632195 None:intergenic
GTGATTTGAGACATATCCGT+CGG 0.649441 1_2:+45632028 Msa0072580:CDS
GTTTCTCAGGAACAAAGTCA+AGG 0.651456 1_2:-45632143 None:intergenic
TCAATGCTAACAAGGAACAA+AGG 0.653681 1_2:-45632676 None:intergenic
TAATTCTCAGATCGCACTAG+GGG 0.655674 1_2:+45631972 Msa0072580:intron
GGAATGAAGTCAAAAGAGCA+GGG 0.655804 1_2:+45628548 Msa0072580:CDS
GCAAGCAGCTCATGGATGTG+CGG 0.656226 1_2:+45628400 Msa0072580:CDS
ACAGAAGATTACCGTCGCGG+TGG 0.665098 1_2:+45626762 Msa0072580:CDS
GAGTTAATAGGTTATCCCCA+AGG 0.667992 1_2:-45628070 None:intergenic
GCAGTTTCTGTCTCACTGTG+CGG 0.668245 1_2:-45628586 None:intergenic
ATTCTCAGATCGCACTAGGG+GGG 0.670913 1_2:+45631974 Msa0072580:intron
TAAATACAGTCAAGTCACCC+AGG 0.674240 1_2:-45632432 None:intergenic
AGCAGGCATTGACCGGCTGT+AGG 0.674560 1_2:-45632168 None:intergenic
AATTCTCAGATCGCACTAGG+GGG 0.677507 1_2:+45631973 Msa0072580:intron
GATTTCACCTCCGAAGACGA+AGG 0.680908 1_2:+45626738 Msa0072580:CDS
CGGCGTGGTAGCCACCGCGA+CGG 0.681696 1_2:-45626773 None:intergenic
TGGAGATTTGCAGAGATACG+TGG 0.683349 1_2:+45627872 Msa0072580:intron
CTTGCACTTGACATCAGCTG+AGG 0.686469 1_2:-45628612 None:intergenic
TGACAACTTTGATAGGGACG+AGG 0.691000 1_2:+45628820 Msa0072580:CDS
GGCACAGAAGATTACCGTCG+CGG 0.695054 1_2:+45626759 Msa0072580:CDS
GAGTGCTCAGCATTACACAG+AGG 0.702864 1_2:+45627911 Msa0072580:CDS
TATCGCCGATTCGAACGGCG+TGG 0.712115 1_2:-45626788 None:intergenic
ATTGATGGCTCCAAAAGACG+GGG 0.727950 1_2:-45632213 None:intergenic
AAGACAGTATCGGTGCCCAG+AGG 0.753096 1_2:+45628694 Msa0072580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTACAATTTTTTTT+GGG + chr1_2:45626668-45626687 Msa0072580:five_prime_UTR 10.0%
!!! AGTTTTTTTTTTAATGTTTT+TGG + chr1_2:45626984-45627003 Msa0072580:intron 10.0%
!! AATATTATTTATGTGTTAAT+AGG + chr1_2:45628914-45628933 Msa0072580:intron 10.0%
!!! ATAGTTAAAATTATAGTTTT+CGG - chr1_2:45629207-45629226 None:intergenic 10.0%
!!! AATTTTAACTATTTATGAAT+TGG + chr1_2:45629215-45629234 Msa0072580:intron 10.0%
!!! ATTTTAACTATTTATGAATT+GGG + chr1_2:45629216-45629235 Msa0072580:intron 10.0%
!! TTTAATTGAATAATTCAGTA+AGG - chr1_2:45626581-45626600 None:intergenic 15.0%
!!! CTTGTAATTACAATTTTTTT+TGG + chr1_2:45626667-45626686 Msa0072580:five_prime_UTR 15.0%
!!! TAAATGATACTTTGAATTTT+AGG + chr1_2:45627029-45627048 Msa0072580:intron 15.0%
!!! AAATGATACTTTGAATTTTA+GGG + chr1_2:45627030-45627049 Msa0072580:intron 15.0%
!!! AAAATAATGCTTTGAATTTT+AGG + chr1_2:45627376-45627395 Msa0072580:intron 15.0%
!!! AAATAATGCTTTGAATTTTA+GGG + chr1_2:45627377-45627396 Msa0072580:intron 15.0%
!! TATACTTAATAAGAGTTAAT+AGG - chr1_2:45628085-45628104 None:intergenic 15.0%
!! AAATATAAATTCTGTCAAAA+AGG + chr1_2:45629766-45629785 Msa0072580:intron 15.0%
!!! TAAGATTTTCCTATATAATT+AGG + chr1_2:45630253-45630272 Msa0072580:intron 15.0%
!!! AAGATTTTCCTATATAATTA+GGG + chr1_2:45630254-45630273 Msa0072580:intron 15.0%
!!! TTTTGAAATATGAAATAGAA+GGG - chr1_2:45631027-45631046 None:intergenic 15.0%
!!! GAACTTAAAATGATTTTAAA+AGG - chr1_2:45631329-45631348 None:intergenic 15.0%
!!! AAAAGATGATTTTTATACTA+CGG + chr1_2:45631350-45631369 Msa0072580:intron 15.0%
!! ACATTTAGTTACAAATATTA+TGG + chr1_2:45631376-45631395 Msa0072580:intron 15.0%
!!! TAAAAAGAGAAGATTTTTAG+GGG - chr1_2:45626916-45626935 None:intergenic 20.0%
!!! GTAAAAAGAGAAGATTTTTA+GGG - chr1_2:45626917-45626936 None:intergenic 20.0%
!!! TGTAAAAAGAGAAGATTTTT+AGG - chr1_2:45626918-45626937 None:intergenic 20.0%
!!! TATTTTTTTAGCTTATGCAA+AGG - chr1_2:45627245-45627264 None:intergenic 20.0%
!!! AATAGAATACCTTGAATTTT+AGG + chr1_2:45627304-45627323 Msa0072580:intron 20.0%
!!! ATAGAATACCTTGAATTTTA+GGG + chr1_2:45627305-45627324 Msa0072580:intron 20.0%
!!! GAGCAATTTAATTTATATCT+AGG + chr1_2:45627350-45627369 Msa0072580:intron 20.0%
!!! CAGTTTTTATCTTTTGTTTT+TGG + chr1_2:45627698-45627717 Msa0072580:intron 20.0%
!! ATTAAGTATAGTGATTATCA+CGG + chr1_2:45628095-45628114 Msa0072580:CDS 20.0%
!!! AAATTATAGTTTTCGGTTAA+CGG - chr1_2:45629200-45629219 None:intergenic 20.0%
!!! TAAAAAATGAGTTTTAGAAG+AGG + chr1_2:45629576-45629595 Msa0072580:intron 20.0%
!!! AAAAAATGAGTTTTAGAAGA+GGG + chr1_2:45629577-45629596 Msa0072580:intron 20.0%
!!! CTAAAATCATTCTTTTACAA+AGG + chr1_2:45629797-45629816 Msa0072580:intron 20.0%
!! ACAAATTAATAAATAGGGAT+GGG - chr1_2:45630976-45630995 None:intergenic 20.0%
!! TACAAATTAATAAATAGGGA+TGG - chr1_2:45630977-45630996 None:intergenic 20.0%
!! CGCTTACAAATTAATAAATA+GGG - chr1_2:45630981-45631000 None:intergenic 20.0%
!! TCGCTTACAAATTAATAAAT+AGG - chr1_2:45630982-45631001 None:intergenic 20.0%
!!! GTTTTGAAATATGAAATAGA+AGG - chr1_2:45631028-45631047 None:intergenic 20.0%
!!! ATTATCTTCCTTTAGTTTAA+CGG + chr1_2:45631198-45631217 Msa0072580:intron 20.0%
!! GTAAAATTTGAACTTACTAA+TGG + chr1_2:45631525-45631544 Msa0072580:intron 20.0%
!!! TTGATTTGCATGATATATTT+TGG - chr1_2:45631568-45631587 None:intergenic 20.0%
!!! TTATTTTTTTGTTGAGGAAA+TGG + chr1_2:45631602-45631621 Msa0072580:intron 20.0%
!! TGATCATAAATGAAAAGAAA+TGG - chr1_2:45631922-45631941 None:intergenic 20.0%
!! CATCATAATTGTATTCTTAA+TGG - chr1_2:45632615-45632634 None:intergenic 20.0%
!! CATATATCAAGAATATCATT+CGG - chr1_2:45632746-45632765 None:intergenic 20.0%
! AGTGAAAGAAAAGAGAAAAT+TGG - chr1_2:45626643-45626662 None:intergenic 25.0%
!!! TTTTTTTTGGGTCAAACAAA+TGG + chr1_2:45626680-45626699 Msa0072580:exon 25.0%
!!! TTTTTTTGGGTCAAACAAAT+GGG + chr1_2:45626681-45626700 Msa0072580:exon 25.0%
!!! TTTTTGGTTGAACAATTTGA+GGG + chr1_2:45627000-45627019 Msa0072580:intron 25.0%
!!! ATACTTTGAATTTTAGGGAT+TGG + chr1_2:45627035-45627054 Msa0072580:intron 25.0%
!!! TACTTTGAATTTTAGGGATT+GGG + chr1_2:45627036-45627055 Msa0072580:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_2:45627194-45627213 None:intergenic 25.0%
! AAAACGACTTATAGCTTATA+TGG + chr1_2:45627566-45627585 Msa0072580:intron 25.0%
! AAACGACTTATAGCTTATAT+GGG + chr1_2:45627567-45627586 Msa0072580:intron 25.0%
! ATCTCTTTAACCATATTGAT+AGG - chr1_2:45628125-45628144 None:intergenic 25.0%
!! AGAGATATGCTTTCATATTT+TGG + chr1_2:45628139-45628158 Msa0072580:CDS 25.0%
!!! ATATGCTTTCATATTTTGGT+TGG + chr1_2:45628143-45628162 Msa0072580:CDS 25.0%
!! TGATAAGAGAAGGATATTTT+CGG - chr1_2:45628219-45628238 None:intergenic 25.0%
!!! ATGTAGAATATTTTGATCCA+AGG - chr1_2:45628724-45628743 None:intergenic 25.0%
! ATCAAAATATTCTACATCTG+CGG + chr1_2:45628727-45628746 Msa0072580:CDS 25.0%
! AACCTTCAAAAATTTAGACA+GGG - chr1_2:45629021-45629040 None:intergenic 25.0%
! AAACCTTCAAAAATTTAGAC+AGG - chr1_2:45629022-45629041 None:intergenic 25.0%
!! ATATTAGAGCTTTGTATTAC+AGG - chr1_2:45629108-45629127 None:intergenic 25.0%
! ATTGACTAAATATCATGGAA+TGG + chr1_2:45629240-45629259 Msa0072580:intron 25.0%
! ATAAACAAGAAAACGTGAAA+AGG - chr1_2:45629372-45629391 None:intergenic 25.0%
!!! ACGTTTTCTTGTTTATATGA+GGG + chr1_2:45629376-45629395 Msa0072580:intron 25.0%
!!! AAAAATGAGTTTTAGAAGAG+GGG + chr1_2:45629578-45629597 Msa0072580:intron 25.0%
! AAAAAATCTCAAGAGACAAT+AGG + chr1_2:45629604-45629623 Msa0072580:intron 25.0%
!!! TTCTAAAACAGAGATAGAAA+AGG + chr1_2:45629639-45629658 Msa0072580:intron 25.0%
!! TCTAAAACAGAGATAGAAAA+GGG + chr1_2:45629640-45629659 Msa0072580:intron 25.0%
!!! TTTGACTTTTCTTTGATGTT+TGG - chr1_2:45629749-45629768 None:intergenic 25.0%
! TAGCAATAATGATGTCAATA+GGG + chr1_2:45629858-45629877 Msa0072580:intron 25.0%
! TCTAATAGATAAATTCAGGT+AGG - chr1_2:45630019-45630038 None:intergenic 25.0%
! GTCATCTAATAGATAAATTC+AGG - chr1_2:45630023-45630042 None:intergenic 25.0%
! TCTATTAGATGACCTTATTA+TGG + chr1_2:45630030-45630049 Msa0072580:intron 25.0%
! TTGTCTCATTAACCATAATA+AGG - chr1_2:45630045-45630064 None:intergenic 25.0%
!! GGAAAAATCTTTATTTCTCA+AGG + chr1_2:45630095-45630114 Msa0072580:intron 25.0%
!! TGTATAATGGGATGTAATTA+AGG + chr1_2:45630169-45630188 Msa0072580:intron 25.0%
! TCTGAAAAAAAACACTAGTA+TGG + chr1_2:45630319-45630338 Msa0072580:intron 25.0%
! CTGAAAAAAAACACTAGTAT+GGG + chr1_2:45630320-45630339 Msa0072580:intron 25.0%
! ATTTCCATGTACTGAAATTA+AGG + chr1_2:45630397-45630416 Msa0072580:intron 25.0%
!! AGATGAATGATGCAAATTTT+AGG + chr1_2:45630450-45630469 Msa0072580:intron 25.0%
!! TTTTTACTATAAGGAATGTG+TGG - chr1_2:45630624-45630643 None:intergenic 25.0%
! ATTCCTTATAGTAAAAAGCA+TGG + chr1_2:45630627-45630646 Msa0072580:intron 25.0%
!!! TAACCATGCTTTTTACTATA+AGG - chr1_2:45630633-45630652 None:intergenic 25.0%
! AATTGTGAATTGTGAAATTC+TGG - chr1_2:45630827-45630846 None:intergenic 25.0%
! AAATTAATAAATAGGGATGG+GGG - chr1_2:45630974-45630993 None:intergenic 25.0%
! CAAATTAATAAATAGGGATG+GGG - chr1_2:45630975-45630994 None:intergenic 25.0%
! AAAATCCATTTAGAAGAGAA+TGG - chr1_2:45631097-45631116 None:intergenic 25.0%
!!! TCTCTTCTAAATGGATTTTA+TGG + chr1_2:45631098-45631117 Msa0072580:intron 25.0%
! CTAAAGGAAGATAATAAAGT+TGG - chr1_2:45631193-45631212 None:intergenic 25.0%
!! TTATCTTCCTTTAGTTTAAC+GGG + chr1_2:45631199-45631218 Msa0072580:intron 25.0%
! AAAAAAAAACTGTCCAAACA+AGG + chr1_2:45631452-45631471 Msa0072580:intron 25.0%
! AGTAAGTAGCATTAAAAAAC+AGG - chr1_2:45631640-45631659 None:intergenic 25.0%
!!! TGTTTTTTAATGCTACTTAC+TGG + chr1_2:45631639-45631658 Msa0072580:intron 25.0%
! ACATAACAAAAGAATCAACA+TGG - chr1_2:45631720-45631739 None:intergenic 25.0%
!! CTCTATCTTTAATTTATCTC+AGG + chr1_2:45631831-45631850 Msa0072580:intron 25.0%
! CATAAATGAAAAGAAATGGA+TGG - chr1_2:45631918-45631937 None:intergenic 25.0%
!! TCCATAAGCACTTTATTTAA+GGG - chr1_2:45632066-45632085 None:intergenic 25.0%
TTCAATTAAATTAACCGCGA+AGG + chr1_2:45626591-45626610 Msa0072580:five_prime_UTR 30.0%
!!! GTTTTTGGTTGAACAATTTG+AGG + chr1_2:45626999-45627018 Msa0072580:intron 30.0%
TAATAAACCAATGGCTCATT+TGG - chr1_2:45627275-45627294 None:intergenic 30.0%
CTTCCTAGATAATAAACCAA+TGG - chr1_2:45627284-45627303 None:intergenic 30.0%
TTAAGCAACCATTTAGACTA+CGG + chr1_2:45627401-45627420 Msa0072580:intron 30.0%
TTTCATAAGCTATCTTAGAG+AGG - chr1_2:45627549-45627568 None:intergenic 30.0%
CATCAGTTTATGTTATAAGC+TGG + chr1_2:45627647-45627666 Msa0072580:intron 30.0%
TTAACTGTTCATCCAAACAT+TGG + chr1_2:45627673-45627692 Msa0072580:intron 30.0%
TAACTGTTCATCCAAACATT+GGG + chr1_2:45627674-45627693 Msa0072580:intron 30.0%
ATAAAAACTGTCCCAATGTT+TGG - chr1_2:45627688-45627707 None:intergenic 30.0%
!!! TGTTTTTGGCCATATTGTTT+TGG + chr1_2:45627712-45627731 Msa0072580:intron 30.0%
CATGTCAAACCAAAACAATA+TGG - chr1_2:45627724-45627743 None:intergenic 30.0%
!!! GTCTTTGCTTTTTTGTGTTT+TGG + chr1_2:45627763-45627782 Msa0072580:intron 30.0%
!! CAGTTTTTATTTGTCGTTGT+TGG + chr1_2:45627787-45627806 Msa0072580:intron 30.0%
CACTGATGATAAAAAATGTG+TGG + chr1_2:45627980-45627999 Msa0072580:CDS 30.0%
!!! CTTTCATATTTTGGTTGGAT+TGG + chr1_2:45628148-45628167 Msa0072580:CDS 30.0%
! GATAAGAGAAGGATATTTTC+GGG - chr1_2:45628218-45628237 None:intergenic 30.0%
! GATCAATTGTTGATAAGAGA+AGG - chr1_2:45628229-45628248 None:intergenic 30.0%
TTACTGTTAGGAAGAATAAG+AGG - chr1_2:45628281-45628300 None:intergenic 30.0%
!! ATAGTCTTGTCTTTACTGTT+AGG - chr1_2:45628293-45628312 None:intergenic 30.0%
AGAGACACTAAAACATCAAA+TGG + chr1_2:45628332-45628351 Msa0072580:CDS 30.0%
ATATTCAGACAAGACAGTAT+CGG + chr1_2:45628684-45628703 Msa0072580:CDS 30.0%
GTATTATTTGATCCTCATAG+TGG + chr1_2:45628797-45628816 Msa0072580:CDS 30.0%
! ATATTTTCGCTATGTAGAGT+AGG - chr1_2:45628899-45628918 None:intergenic 30.0%
TTTATGTGTTAATAGGTTGC+TGG + chr1_2:45628921-45628940 Msa0072580:intron 30.0%
GCTGGAATTGATTAATTGTA+TGG + chr1_2:45628939-45628958 Msa0072580:intron 30.0%
! TTCCCTGTCTAAATTTTTGA+AGG + chr1_2:45629016-45629035 Msa0072580:intron 30.0%
AAAAATGCTATTCCAGCATA+GGG - chr1_2:45629169-45629188 None:intergenic 30.0%
AAAAAATGCTATTCCAGCAT+AGG - chr1_2:45629170-45629189 None:intergenic 30.0%
TGGGAATTGACTAAATATCA+TGG + chr1_2:45629235-45629254 Msa0072580:intron 30.0%
CAACATTATGAATAAGGCAT+GGG - chr1_2:45629348-45629367 None:intergenic 30.0%
AAAGGCCAACATTATGAATA+AGG - chr1_2:45629354-45629373 None:intergenic 30.0%
!! CACGTTTTCTTGTTTATATG+AGG + chr1_2:45629375-45629394 Msa0072580:intron 30.0%
!! CGTTTTCTTGTTTATATGAG+GGG + chr1_2:45629377-45629396 Msa0072580:intron 30.0%
TAAACATGAATAATGAGTGC+TGG + chr1_2:45629497-45629516 Msa0072580:intron 30.0%
!!! TCTATCTCTGTTTTAGAAGA+CGG - chr1_2:45629637-45629656 None:intergenic 30.0%
TTCTACTTTCTATCAAGACT+GGG - chr1_2:45629702-45629721 None:intergenic 30.0%
TTTCTACTTTCTATCAAGAC+TGG - chr1_2:45629703-45629722 None:intergenic 30.0%
CTAGCAATAATGATGTCAAT+AGG + chr1_2:45629857-45629876 Msa0072580:intron 30.0%
AGTCTTCAAGACATTGTAAA+AGG - chr1_2:45629983-45630002 None:intergenic 30.0%
! TTTTTCCATGTTTCCAACTA+TGG - chr1_2:45630082-45630101 None:intergenic 30.0%
ACCTAAAAAGCTCTATTATG+AGG + chr1_2:45630128-45630147 Msa0072580:intron 30.0%
! ACCTCATAATAGAGCTTTTT+AGG - chr1_2:45630132-45630151 None:intergenic 30.0%
CTTAGTTATGGGTGTATAAT+GGG + chr1_2:45630157-45630176 Msa0072580:intron 30.0%
! ATAATGGGATGTAATTAAGG+TGG + chr1_2:45630172-45630191 Msa0072580:intron 30.0%
! GTAATGATAAGAAGCACATA+AGG + chr1_2:45630198-45630217 Msa0072580:intron 30.0%
TGCAATCACCCTAATTATAT+AGG - chr1_2:45630265-45630284 None:intergenic 30.0%
AATTTCAGTACATGGAAATG+TGG - chr1_2:45630396-45630415 None:intergenic 30.0%
TCAACCTTAATTTCAGTACA+TGG - chr1_2:45630404-45630423 None:intergenic 30.0%
TACTGAAATTAAGGTTGAGT+GGG + chr1_2:45630406-45630425 Msa0072580:intron 30.0%
! TTTTATAAAGCCCAGACTTT+AGG + chr1_2:45630479-45630498 Msa0072580:intron 30.0%
TTTCTGATAAGATCACAGTT+TGG + chr1_2:45630551-45630570 Msa0072580:intron 30.0%
TCCTGTAATTCTAGTCAATT+TGG + chr1_2:45630898-45630917 Msa0072580:intron 30.0%
CCTGTAATTCTAGTCAATTT+GGG + chr1_2:45630899-45630918 Msa0072580:intron 30.0%
AGTCAATTTGGGAAATGATT+TGG + chr1_2:45630910-45630929 Msa0072580:intron 30.0%
GTCAATTTGGGAAATGATTT+GGG + chr1_2:45630911-45630930 Msa0072580:intron 30.0%
!! TTAATTTGTAAGCGAAAGAG+AGG + chr1_2:45630987-45631006 Msa0072580:intron 30.0%
! TAATTTGTAAGCGAAAGAGA+GGG + chr1_2:45630988-45631007 Msa0072580:intron 30.0%
TTGTTGTACTTCTAACATCT+TGG + chr1_2:45631281-45631300 Msa0072580:intron 30.0%
AAATATTATGGTCCATGAGA+TGG + chr1_2:45631388-45631407 Msa0072580:intron 30.0%
CCAATTGCAAACTATAAAGT+TGG - chr1_2:45631418-45631437 None:intergenic 30.0%
! CCAACTTTATAGTTTGCAAT+TGG + chr1_2:45631415-45631434 Msa0072580:intron 30.0%
!!! TTTGGACAGTTTTTTTTTCC+AGG - chr1_2:45631450-45631469 None:intergenic 30.0%
CTTTATCTAATACTCAGTTC+AGG - chr1_2:45631506-45631525 None:intergenic 30.0%
TCATGCAAATCAATTACTTC+AGG + chr1_2:45631575-45631594 Msa0072580:intron 30.0%
!!! GGCTGATTATTTTTTTGTTG+AGG + chr1_2:45631596-45631615 Msa0072580:intron 30.0%
! TTTTTGTTGAGGAAATGGTT+TGG + chr1_2:45631607-45631626 Msa0072580:intron 30.0%
GCAAGTTATTATGTTGAAAC+TGG - chr1_2:45631682-45631701 None:intergenic 30.0%
!! AACATAATAACTTGCTTTGC+TGG + chr1_2:45631687-45631706 Msa0072580:intron 30.0%
AAGAAATTTATTACCTTCCG+CGG - chr1_2:45631895-45631914 None:intergenic 30.0%
ATATCTATTGAAGAAATCCC+GGG - chr1_2:45632007-45632026 None:intergenic 30.0%
CATATCTATTGAAGAAATCC+CGG - chr1_2:45632008-45632027 None:intergenic 30.0%
! CTCCATAAGCACTTTATTTA+AGG - chr1_2:45632067-45632086 None:intergenic 30.0%
! GTTGTACTTGTTTAAAGCTA+GGG + chr1_2:45632530-45632549 Msa0072580:three_prime_UTR 30.0%
! TTGTACTTGTTTAAAGCTAG+GGG + chr1_2:45632531-45632550 Msa0072580:three_prime_UTR 30.0%
AGAAGAACGAACAGAATGAT+GGG - chr1_2:45626892-45626911 None:intergenic 35.0%
AAGAAGAACGAACAGAATGA+TGG - chr1_2:45626893-45626912 None:intergenic 35.0%
! TGAAGACACAGTTTTCGTTA+GGG - chr1_2:45627164-45627183 None:intergenic 35.0%
! ATGAAGACACAGTTTTCGTT+AGG - chr1_2:45627165-45627184 None:intergenic 35.0%
!! GAGCCATTGGTTTATTATCT+AGG + chr1_2:45627278-45627297 Msa0072580:intron 35.0%
TGCTCAATCCCTAAAATTCA+AGG - chr1_2:45627316-45627335 None:intergenic 35.0%
TTAGGGATTGAGCAACAATT+TGG + chr1_2:45627322-45627341 Msa0072580:intron 35.0%
TAGGGATTGAGCAACAATTT+GGG + chr1_2:45627323-45627342 Msa0072580:intron 35.0%
TAAGCAACCATTTAGACTAC+GGG + chr1_2:45627402-45627421 Msa0072580:intron 35.0%
GAACCTGTGAAAACAACTTA+CGG + chr1_2:45627488-45627507 Msa0072580:intron 35.0%
!!! CGTTGTTGGCTTTATTGTTT+TGG + chr1_2:45627801-45627820 Msa0072580:intron 35.0%
!!! TGTCTTTGCTTTTTTGTGTG+TGG + chr1_2:45627852-45627871 Msa0072580:intron 35.0%
CAAAATCGTTATCTCATCCA+GGG - chr1_2:45627940-45627959 None:intergenic 35.0%
! AACGATTTTGCAACAGATTG+CGG + chr1_2:45627950-45627969 Msa0072580:CDS 35.0%
TTAGACCATTTCAAGCATTC+TGG + chr1_2:45628011-45628030 Msa0072580:CDS 35.0%
ATACAAACATGCTGTCCATT+TGG - chr1_2:45628038-45628057 None:intergenic 35.0%
AAATGGACAGCATGTTTGTA+TGG + chr1_2:45628037-45628056 Msa0072580:CDS 35.0%
!!! TGTATGGTTTTTGAGTACCT+TGG + chr1_2:45628053-45628072 Msa0072580:CDS 35.0%
!!! GTATGGTTTTTGAGTACCTT+GGG + chr1_2:45628054-45628073 Msa0072580:CDS 35.0%
!!! TATGGTTTTTGAGTACCTTG+GGG + chr1_2:45628055-45628074 Msa0072580:CDS 35.0%
ATCAACAATTGATCCGTCTA+AGG + chr1_2:45628235-45628254 Msa0072580:CDS 35.0%
! AAGTGCAAGTTAGTTGACTT+TGG + chr1_2:45628626-45628645 Msa0072580:CDS 35.0%
!! ATATGTTTTGAGCTTGCAAC+TGG + chr1_2:45628770-45628789 Msa0072580:CDS 35.0%
ATAGTGGTGACAACTTTGAT+AGG + chr1_2:45628813-45628832 Msa0072580:CDS 35.0%
TAGTGGTGACAACTTTGATA+GGG + chr1_2:45628814-45628833 Msa0072580:CDS 35.0%
!!! GCTGCTGTGTTTTATTTAGT+TGG + chr1_2:45628961-45628980 Msa0072580:intron 35.0%
ATTTAGTTGGTCACGTTGAA+AGG + chr1_2:45628974-45628993 Msa0072580:intron 35.0%
TTCAGTGAGTGGTTTAATTG+GGG - chr1_2:45629139-45629158 None:intergenic 35.0%
CTTCAGTGAGTGGTTTAATT+GGG - chr1_2:45629140-45629159 None:intergenic 35.0%
AAAATGCTATTCCAGCATAG+GGG - chr1_2:45629168-45629187 None:intergenic 35.0%
! TTATAGTTTTCGGTTAACGG+TGG - chr1_2:45629197-45629216 None:intergenic 35.0%
CCAACATTATGAATAAGGCA+TGG - chr1_2:45629349-45629368 None:intergenic 35.0%
! CCATGCCTTATTCATAATGT+TGG + chr1_2:45629346-45629365 Msa0072580:intron 35.0%
TTGCCAGTAACAGTTATATG+CGG - chr1_2:45629430-45629449 None:intergenic 35.0%
! TTTTCTTTGATGTTTGGCGA+GGG - chr1_2:45629743-45629762 None:intergenic 35.0%
AGAAATGTGATGACTAATCG+TGG - chr1_2:45629839-45629858 None:intergenic 35.0%
CATAACTGTAAGTACCAGAA+CGG + chr1_2:45629907-45629926 Msa0072580:intron 35.0%
ATAACTGTAAGTACCAGAAC+GGG + chr1_2:45629908-45629927 Msa0072580:intron 35.0%
ACAATGTCTTGAAGACTTTC+AGG + chr1_2:45629986-45630005 Msa0072580:intron 35.0%
TAGAGAATTGATGCCATAGT+TGG + chr1_2:45630066-45630085 Msa0072580:intron 35.0%
GCTTAGTTATGGGTGTATAA+TGG + chr1_2:45630156-45630175 Msa0072580:intron 35.0%
GTACTGAAATTAAGGTTGAG+TGG + chr1_2:45630405-45630424 Msa0072580:intron 35.0%
CCTCAACTTGTAAAACAAGA+CGG - chr1_2:45630693-45630712 None:intergenic 35.0%
AACATAGTTACGAAGGACTT+GGG - chr1_2:45630803-45630822 None:intergenic 35.0%
! ATTTTGCAAGTCATCCTTTG+AGG + chr1_2:45630849-45630868 Msa0072580:intron 35.0%
! TTTTGCAAGTCATCCTTTGA+GGG + chr1_2:45630850-45630869 Msa0072580:intron 35.0%
CCCAAATTGACTAGAATTAC+AGG - chr1_2:45630902-45630921 None:intergenic 35.0%
AATTTGTAAGCGAAAGAGAG+GGG + chr1_2:45630989-45631008 Msa0072580:intron 35.0%
TCCATTTAGAAGAGAATGGT+GGG - chr1_2:45631093-45631112 None:intergenic 35.0%
ATCCATTTAGAAGAGAATGG+TGG - chr1_2:45631094-45631113 None:intergenic 35.0%
! TCCTTTAGTTTAACGGGTAA+TGG + chr1_2:45631205-45631224 Msa0072580:intron 35.0%
!! GCAATCCTCTATTTCTAGAA+TGG + chr1_2:45631230-45631249 Msa0072580:intron 35.0%
! GCATTCCATTCTAGAAATAG+AGG - chr1_2:45631238-45631257 None:intergenic 35.0%
!!! AAAGTTGGTTTTCCATCTCA+TGG - chr1_2:45631403-45631422 None:intergenic 35.0%
!!! ACAGTTTTTTTTTCCAGGCA+TGG - chr1_2:45631445-45631464 None:intergenic 35.0%
! TTTTACTCGCATTTGTGCTT+TGG + chr1_2:45631779-45631798 Msa0072580:intron 35.0%
GTTCCATCATTAATGCTAAG+TGG - chr1_2:45631858-45631877 None:intergenic 35.0%
! GCATTAATGATGGAACTTCT+TGG + chr1_2:45631862-45631881 Msa0072580:CDS 35.0%
TATAATTCTCAGATCGCACT+AGG + chr1_2:45631970-45631989 Msa0072580:intron 35.0%
ATAATTCTCAGATCGCACTA+GGG + chr1_2:45631971-45631990 Msa0072580:intron 35.0%
CGGGATTTCTTCAATAGATA+TGG + chr1_2:45632006-45632025 Msa0072580:CDS 35.0%
! GCCCTTAAATAAAGTGCTTA+TGG + chr1_2:45632062-45632081 Msa0072580:CDS 35.0%
! AAGTGACATGAGTGACTTTT+TGG + chr1_2:45632113-45632132 Msa0072580:CDS 35.0%
CCTTGGAATACTTTCTTTGA+TGG - chr1_2:45632378-45632397 None:intergenic 35.0%
!! CCATCAAAGAAAGTATTCCA+AGG + chr1_2:45632375-45632394 Msa0072580:CDS 35.0%
CTATCAAGATGAACTACTTG+CGG - chr1_2:45632404-45632423 None:intergenic 35.0%
! GGTTGTACTTGTTTAAAGCT+AGG + chr1_2:45632529-45632548 Msa0072580:three_prime_UTR 35.0%
TGACAAGAGAAACAATCAAC+AGG - chr1_2:45632641-45632660 None:intergenic 35.0%
TCTTGTCAAAGATGTGATGA+TGG + chr1_2:45632653-45632672 Msa0072580:three_prime_UTR 35.0%
TCAATGCTAACAAGGAACAA+AGG - chr1_2:45632679-45632698 None:intergenic 35.0%
CAAACAAGTCAATGCTAACA+AGG - chr1_2:45632687-45632706 None:intergenic 35.0%
!!! ACTTTGCTTTTTTGCCTTCG+CGG - chr1_2:45626608-45626627 None:intergenic 40.0%
!! TTTTGGGTCAAACAAATGGG+TGG + chr1_2:45626684-45626703 Msa0072580:exon 40.0%
TGGGTAGCCATTTAGTGATT+TGG + chr1_2:45627055-45627074 Msa0072580:intron 40.0%
GGGTAGCCATTTAGTGATTT+GGG + chr1_2:45627056-45627075 Msa0072580:intron 40.0%
GGTAGCCATTTAGTGATTTG+GGG + chr1_2:45627057-45627076 Msa0072580:intron 40.0%
AACTGCCCCAAATCACTAAA+TGG - chr1_2:45627065-45627084 None:intergenic 40.0%
! TTTAGTGATTTGGGGCAGTT+TGG + chr1_2:45627065-45627084 Msa0072580:intron 40.0%
AACCAATGGCTCATTTGGAT+TGG - chr1_2:45627270-45627289 None:intergenic 40.0%
AAACAAGCCCGTAGTCTAAA+TGG - chr1_2:45627412-45627431 None:intergenic 40.0%
!! ATGCCGTAAGTTGTTTTCAC+AGG - chr1_2:45627494-45627513 None:intergenic 40.0%
GCAAAATCGTTATCTCATCC+AGG - chr1_2:45627941-45627960 None:intergenic 40.0%
! ATTTTGCAACAGATTGCGGA+GGG + chr1_2:45627954-45627973 Msa0072580:CDS 40.0%
TTGGACCAGAATGCTTGAAA+TGG - chr1_2:45628019-45628038 None:intergenic 40.0%
TTCAAGCATTCTGGTCCAAA+TGG + chr1_2:45628020-45628039 Msa0072580:CDS 40.0%
GAGTTAATAGGTTATCCCCA+AGG - chr1_2:45628073-45628092 None:intergenic 40.0%
! TCACGGATTGCCTATCAATA+TGG + chr1_2:45628112-45628131 Msa0072580:CDS 40.0%
CAGTAAAGACAAGACTATGC+TGG + chr1_2:45628295-45628314 Msa0072580:CDS 40.0%
GATGGTAATCATGAAACCTC+TGG + chr1_2:45628440-45628459 Msa0072580:CDS 40.0%
TCTCTTGCAGAACTTGCATT+CGG - chr1_2:45628482-45628501 None:intergenic 40.0%
CACTAGTAGGTTATCAGATG+CGG + chr1_2:45628523-45628542 Msa0072580:CDS 40.0%
TGGAATGAAGTCAAAAGAGC+AGG + chr1_2:45628547-45628566 Msa0072580:CDS 40.0%
GGAATGAAGTCAAAAGAGCA+GGG + chr1_2:45628548-45628567 Msa0072580:CDS 40.0%
!! TTGACTTTGGTAATGCTTGC+TGG + chr1_2:45628639-45628658 Msa0072580:CDS 40.0%
TTGATCCAAGGATAACCTCT+GGG - chr1_2:45628712-45628731 None:intergenic 40.0%
TTTGATCCAAGGATAACCTC+TGG - chr1_2:45628713-45628732 None:intergenic 40.0%
ATTCTACATCTGCGGATCTT+TGG + chr1_2:45628735-45628754 Msa0072580:CDS 40.0%
TCAAAGTTGTCACCACTATG+AGG - chr1_2:45628812-45628831 None:intergenic 40.0%
GCTTCAGTGAGTGGTTTAAT+TGG - chr1_2:45629141-45629160 None:intergenic 40.0%
GTGCGCATCAAAATCATGTA+TGG + chr1_2:45629277-45629296 Msa0072580:intron 40.0%
TTGTTGTGAAGATGACGTGT+TGG + chr1_2:45629404-45629423 Msa0072580:intron 40.0%
! GTTACTGGCAACATTGATTG+TGG + chr1_2:45629439-45629458 Msa0072580:intron 40.0%
CTCAAGAGACAATAGGCATT+AGG + chr1_2:45629611-45629630 Msa0072580:intron 40.0%
! CTTTTCTTTGATGTTTGGCG+AGG - chr1_2:45629744-45629763 None:intergenic 40.0%
TGACTAATCGTGGAAACACA+TGG - chr1_2:45629829-45629848 None:intergenic 40.0%
AATTGAATAGTCTCCCGTTC+TGG - chr1_2:45629924-45629943 None:intergenic 40.0%
TGATGCCATAGTTGGAAACA+TGG + chr1_2:45630074-45630093 Msa0072580:intron 40.0%
ATGAGGTGCAAGCTTAGTTA+TGG + chr1_2:45630145-45630164 Msa0072580:intron 40.0%
TGAGGTGCAAGCTTAGTTAT+GGG + chr1_2:45630146-45630165 Msa0072580:intron 40.0%
ACTTTCTTACTCTGCTTCAG+TGG + chr1_2:45630227-45630246 Msa0072580:intron 40.0%
TAGGGTGATTGCATGTTGAT+TGG + chr1_2:45630272-45630291 Msa0072580:intron 40.0%
CAACTGCATACCTAAAGTCT+GGG - chr1_2:45630492-45630511 None:intergenic 40.0%
TCAACTGCATACCTAAAGTC+TGG - chr1_2:45630493-45630512 None:intergenic 40.0%
!! GGTATGCAGTTGATGATTCT+TGG + chr1_2:45630500-45630519 Msa0072580:intron 40.0%
ATCACAGTTTGGCATAAGCA+AGG + chr1_2:45630562-45630581 Msa0072580:intron 40.0%
! GCAAGGAGGGTAAAGTTTTA+TGG + chr1_2:45630579-45630598 Msa0072580:intron 40.0%
TTAACCACACATTCTCAACG+TGG + chr1_2:45630653-45630672 Msa0072580:intron 40.0%
ACACATTCTCAACGTGGAAA+GGG + chr1_2:45630659-45630678 Msa0072580:intron 40.0%
!!! CCGTCTTGTTTTACAAGTTG+AGG + chr1_2:45630690-45630709 Msa0072580:intron 40.0%
!! CCTCTCATGGTTTTTGTTTC+TGG - chr1_2:45630720-45630739 None:intergenic 40.0%
CCAGAAACAAAAACCATGAG+AGG + chr1_2:45630717-45630736 Msa0072580:intron 40.0%
AGGACTTGGGATAGTAGAAT+AGG - chr1_2:45630790-45630809 None:intergenic 40.0%
CAACATAGTTACGAAGGACT+TGG - chr1_2:45630804-45630823 None:intergenic 40.0%
TTCTGGCAACATAGTTACGA+AGG - chr1_2:45630810-45630829 None:intergenic 40.0%
! ATCCTTTGAGGGAGTCAAAA+TGG + chr1_2:45630861-45630880 Msa0072580:intron 40.0%
GGTCAGACTTGAGATTCAAT+TGG + chr1_2:45630932-45630951 Msa0072580:intron 40.0%
! AATGGTGGGAAGTCATTTGT+GGG - chr1_2:45631079-45631098 None:intergenic 40.0%
TCCCACCATTCTCTTCTAAA+TGG + chr1_2:45631089-45631108 Msa0072580:intron 40.0%
!!! TTTTGATTTCCCAGCCTGAT+TGG + chr1_2:45631124-45631143 Msa0072580:intron 40.0%
TGGATTCTCAAGACAGTGAT+GGG - chr1_2:45631173-45631192 None:intergenic 40.0%
TTGGATTCTCAAGACAGTGA+TGG - chr1_2:45631174-45631193 None:intergenic 40.0%
GCCATTACCCGTTAAACTAA+AGG - chr1_2:45631209-45631228 None:intergenic 40.0%
CATCACACAACATCCTTGTT+TGG - chr1_2:45631468-45631487 None:intergenic 40.0%
TCGCATTTGTGCTTTGGTTA+TGG + chr1_2:45631785-45631804 Msa0072580:intron 40.0%
GGACCACTTAGCATTAATGA+TGG + chr1_2:45631852-45631871 Msa0072580:intron 40.0%
! GTTTGCAGTTAACTTGAGTC+TGG + chr1_2:45631945-45631964 Msa0072580:intron 40.0%
TAATTCTCAGATCGCACTAG+GGG + chr1_2:45631972-45631991 Msa0072580:intron 40.0%
! GTGATTTGAGACATATCCGT+CGG + chr1_2:45632028-45632047 Msa0072580:CDS 40.0%
GTTTCTCAGGAACAAAGTCA+AGG - chr1_2:45632146-45632165 None:intergenic 40.0%
! TGATTAGAAGACGGCATTGA+TGG - chr1_2:45632231-45632250 None:intergenic 40.0%
TACTTCTGACCAGAAGAACA+AGG + chr1_2:45632272-45632291 Msa0072580:CDS 40.0%
CATCTTTGTCCTTGTTCTTC+TGG - chr1_2:45632284-45632303 None:intergenic 40.0%
AGAACAAGGACAAAGATGAG+AGG + chr1_2:45632286-45632305 Msa0072580:CDS 40.0%
GAACAAGGACAAAGATGAGA+GGG + chr1_2:45632287-45632306 Msa0072580:CDS 40.0%
TTTGATGGAGAATGCATGAG+TGG - chr1_2:45632363-45632382 None:intergenic 40.0%
ATCTTGATAGAGCTCTTTCC+TGG + chr1_2:45632414-45632433 Msa0072580:three_prime_UTR 40.0%
TCTTGATAGAGCTCTTTCCT+GGG + chr1_2:45632415-45632434 Msa0072580:three_prime_UTR 40.0%
TAAATACAGTCAAGTCACCC+AGG - chr1_2:45632435-45632454 None:intergenic 40.0%
CAATTCACACGCACATCATT+GGG - chr1_2:45632471-45632490 None:intergenic 40.0%
ACAATTCACACGCACATCAT+TGG - chr1_2:45632472-45632491 None:intergenic 40.0%
!! TTGTTTCCAGGGCTTGTTTT+CGG + chr1_2:45632488-45632507 Msa0072580:three_prime_UTR 40.0%
! TGTTTTCGGAAATGCTGGAT+TGG + chr1_2:45632502-45632521 Msa0072580:three_prime_UTR 40.0%
!! TGTATCCTTATGGTGTTGTC+TGG - chr1_2:45632579-45632598 None:intergenic 40.0%
GAGCTCATGTTGTATCCTTA+TGG - chr1_2:45632589-45632608 None:intergenic 40.0%
ATCTTCTGTGCCTTCGTCTT+CGG - chr1_2:45626751-45626770 None:intergenic 45.0%
TATGTCGTTCAGAGCAAGCT+TGG + chr1_2:45626828-45626847 Msa0072580:CDS 45.0%
! TGATTTGGGGCAGTTTGGAT+TGG + chr1_2:45627070-45627089 Msa0072580:intron 45.0%
AGCCAATCCAAATGAGCCAT+TGG + chr1_2:45627265-45627284 Msa0072580:intron 45.0%
! GACTACGGGCTTGTTTGAAT+TGG + chr1_2:45627416-45627435 Msa0072580:intron 45.0%
TGGAGATTTGCAGAGATACG+TGG + chr1_2:45627872-45627891 Msa0072580:intron 45.0%
! GATTTTGCAACAGATTGCGG+AGG + chr1_2:45627953-45627972 Msa0072580:CDS 45.0%
GATTTCCTGGGATCCTTAGA+CGG - chr1_2:45628251-45628270 None:intergenic 45.0%
TCTAAGGATCCCAGGAAATC+TGG + chr1_2:45628251-45628270 Msa0072580:CDS 45.0%
AGATGATTCTACAGCACCAG+AGG - chr1_2:45628459-45628478 None:intergenic 45.0%
!! GAACAAGCTTCTAGTTCTGC+TGG + chr1_2:45628500-45628519 Msa0072580:CDS 45.0%
AGTAGGTTATCAGATGCGGA+TGG + chr1_2:45628527-45628546 Msa0072580:CDS 45.0%
TGACAACTTTGATAGGGACG+AGG + chr1_2:45628820-45628839 Msa0072580:CDS 45.0%
TGGCCGCATATAACTGTTAC+TGG + chr1_2:45629424-45629443 Msa0072580:intron 45.0%
TGGGATGTAATTAAGGTGGC+AGG + chr1_2:45630176-45630195 Msa0072580:intron 45.0%
!! CAGTTGATGATTCTTGGCCT+CGG + chr1_2:45630506-45630525 Msa0072580:intron 45.0%
ACAGTTTGGCATAAGCAAGG+AGG + chr1_2:45630565-45630584 Msa0072580:intron 45.0%
CAGTTTGGCATAAGCAAGGA+GGG + chr1_2:45630566-45630585 Msa0072580:intron 45.0%
GTGGCAGCATACAAAACACA+AGG - chr1_2:45630605-45630624 None:intergenic 45.0%
CTTTCCACGTTGAGAATGTG+TGG - chr1_2:45630660-45630679 None:intergenic 45.0%
CACACATTCTCAACGTGGAA+AGG + chr1_2:45630658-45630677 Msa0072580:intron 45.0%
TTCTCAACGTGGAAAGGGAT+AGG + chr1_2:45630664-45630683 Msa0072580:intron 45.0%
!!! CACCATTTTGACTCCCTCAA+AGG - chr1_2:45630866-45630885 None:intergenic 45.0%
! CTTTGAGGGAGTCAAAATGG+TGG + chr1_2:45630864-45630883 Msa0072580:intron 45.0%
! ATGGTGGGAAGTCATTTGTG+GGG - chr1_2:45631078-45631097 None:intergenic 45.0%
! GAATGGTGGGAAGTCATTTG+TGG - chr1_2:45631080-45631099 None:intergenic 45.0%
TTTCCCAGCCTGATTGGATA+AGG + chr1_2:45631130-45631149 Msa0072580:intron 45.0%
!! TAACTTGCTTTGCTGGAGAG+TGG + chr1_2:45631694-45631713 Msa0072580:intron 45.0%
AACTTCTTGGAATGATGCCG+CGG + chr1_2:45631875-45631894 Msa0072580:CDS 45.0%
AATTCTCAGATCGCACTAGG+GGG + chr1_2:45631973-45631992 Msa0072580:intron 45.0%
CTACATCCGTGGATGAATGT+AGG + chr1_2:45632189-45632208 Msa0072580:CDS 45.0%
! ATTGATGGCTCCAAAAGACG+GGG - chr1_2:45632216-45632235 None:intergenic 45.0%
! CATTGATGGCTCCAAAAGAC+GGG - chr1_2:45632217-45632236 None:intergenic 45.0%
! GCATTGATGGCTCCAAAAGA+CGG - chr1_2:45632218-45632237 None:intergenic 45.0%
CCAGGGTTGTGATTAGAAGA+CGG - chr1_2:45632240-45632259 None:intergenic 45.0%
AAGTAGCAGTTTCAGCACCA+GGG - chr1_2:45632257-45632276 None:intergenic 45.0%
TGTGCGTGTGAATTGTTTCC+AGG + chr1_2:45632476-45632495 Msa0072580:three_prime_UTR 45.0%
GTGCGTGTGAATTGTTTCCA+GGG + chr1_2:45632477-45632496 Msa0072580:three_prime_UTR 45.0%
! TTCGGAAATGCTGGATTGGA+TGG + chr1_2:45632506-45632525 Msa0072580:three_prime_UTR 45.0%
! TCGGAAATGCTGGATTGGAT+GGG + chr1_2:45632507-45632526 Msa0072580:three_prime_UTR 45.0%
TGGGTCAAACAAATGGGTGG+CGG + chr1_2:45626687-45626706 Msa0072580:exon 50.0%
! GGAGGTGAAATCGCTGCTTT+CGG - chr1_2:45626730-45626749 None:intergenic 50.0%
GATTTCACCTCCGAAGACGA+AGG + chr1_2:45626738-45626757 Msa0072580:CDS 50.0%
!! GAAGGTATCGCCGATTCGAA+CGG - chr1_2:45626796-45626815 None:intergenic 50.0%
! GCTCTGAACGACATAACGAC+CGG - chr1_2:45626823-45626842 None:intergenic 50.0%
TCGTTCAGAGCAAGCTTGGT+TGG + chr1_2:45626832-45626851 Msa0072580:CDS 50.0%
CGTTCAGAGCAAGCTTGGTT+GGG + chr1_2:45626833-45626852 Msa0072580:CDS 50.0%
GTTCAGAGCAAGCTTGGTTG+GGG + chr1_2:45626834-45626853 Msa0072580:CDS 50.0%
GGGGTCATTTCTCCACTGTT+TGG + chr1_2:45626853-45626872 Msa0072580:CDS 50.0%
GAGTGCTCAGCATTACACAG+AGG + chr1_2:45627911-45627930 Msa0072580:CDS 50.0%
TTGATCCGTCTAAGGATCCC+AGG + chr1_2:45628243-45628262 Msa0072580:CDS 50.0%
!! AGAGGAGCACCAGATTTCCT+GGG - chr1_2:45628263-45628282 None:intergenic 50.0%
!! AAGAGGAGCACCAGATTTCC+TGG - chr1_2:45628264-45628283 None:intergenic 50.0%
AAAGCCAAGCAAGCAGCTCA+TGG + chr1_2:45628392-45628411 Msa0072580:CDS 50.0%
ACATCCATGAGCTGCTTGCT+TGG - chr1_2:45628399-45628418 None:intergenic 50.0%
!! GAGAAGGAGGCATCTGAAGA+TGG + chr1_2:45628422-45628441 Msa0072580:CDS 50.0%
!! CTAGTTCTGCTGGCACTAGT+AGG + chr1_2:45628510-45628529 Msa0072580:CDS 50.0%
AAAGAGCAGGGCAACAGAAG+AGG + chr1_2:45628560-45628579 Msa0072580:CDS 50.0%
GCAGTTTCTGTCTCACTGTG+CGG - chr1_2:45628589-45628608 None:intergenic 50.0%
CTTGCACTTGACATCAGCTG+AGG - chr1_2:45628615-45628634 None:intergenic 50.0%
! AGGGGTTTTGCTTCAGTGAG+TGG - chr1_2:45629150-45629169 None:intergenic 50.0%
CTGAAGCAAAACCCCTATGC+TGG + chr1_2:45629154-45629173 Msa0072580:intron 50.0%
ATGGAATGGTACACAGAGCC+AGG + chr1_2:45629254-45629273 Msa0072580:intron 50.0%
TGGAATGGTACACAGAGCCA+GGG + chr1_2:45629255-45629274 Msa0072580:intron 50.0%
!! CATGATTTTGATGCGCACCC+TGG - chr1_2:45629275-45629294 None:intergenic 50.0%
TCAACGTGGAAAGGGATAGG+TGG + chr1_2:45630667-45630686 Msa0072580:intron 50.0%
!! TGTTTCTGGTCTGCCTCTCA+TGG - chr1_2:45630733-45630752 None:intergenic 50.0%
! CAGTTGCCTCGACTTGTTTC+TGG - chr1_2:45630747-45630766 None:intergenic 50.0%
TAGGCGTCTGCATCTTGTTC+AGG - chr1_2:45630771-45630790 None:intergenic 50.0%
TAGGGATGGGGGAATCAATC+AGG - chr1_2:45630963-45630982 None:intergenic 50.0%
TGTAAGCGAAAGAGAGGGGA+AGG + chr1_2:45630993-45631012 Msa0072580:intron 50.0%
TGGTGGGAAGTCATTTGTGG+GGG - chr1_2:45631077-45631096 None:intergenic 50.0%
GTGCCTTATCCAATCAGGCT+GGG - chr1_2:45631136-45631155 None:intergenic 50.0%
CAGCCTGATTGGATAAGGCA+CGG + chr1_2:45631135-45631154 Msa0072580:intron 50.0%
CAACCGTGCCTTATCCAATC+AGG - chr1_2:45631141-45631160 None:intergenic 50.0%
TGCAATTGGACAACCATGCC+TGG + chr1_2:45631429-45631448 Msa0072580:intron 50.0%
ATTCTCAGATCGCACTAGGG+GGG + chr1_2:45631974-45631993 Msa0072580:intron 50.0%
CATTCATCCACGGATGTAGC+AGG - chr1_2:45632188-45632207 None:intergenic 50.0%
! GAATGTAGGTCCCCGTCTTT+TGG + chr1_2:45632203-45632222 Msa0072580:CDS 50.0%
CCGTCTTCTAATCACAACCC+TGG + chr1_2:45632237-45632256 Msa0072580:CDS 50.0%
GAAGTAGCAGTTTCAGCACC+AGG - chr1_2:45632258-45632277 None:intergenic 50.0%
CAAGGACAAAGATGAGAGGG+AGG + chr1_2:45632290-45632309 Msa0072580:CDS 50.0%
GTTTCCAATTCCAGCCTCCA+TGG - chr1_2:45632316-45632335 None:intergenic 50.0%
GCATTTCCGAAAACAAGCCC+TGG - chr1_2:45632497-45632516 None:intergenic 50.0%
!! GGGCTTGTTTTCGGAAATGC+TGG + chr1_2:45632497-45632516 Msa0072580:three_prime_UTR 50.0%
! CGGAAATGCTGGATTGGATG+GGG + chr1_2:45632508-45632527 Msa0072580:three_prime_UTR 50.0%
GCAGACACAAAGGAACTAGC+TGG - chr1_2:45632557-45632576 None:intergenic 50.0%
GTGTTGTCTGGCAGACACAA+AGG - chr1_2:45632567-45632586 None:intergenic 50.0%
GTCTGCCAGACAACACCATA+AGG + chr1_2:45632571-45632590 Msa0072580:three_prime_UTR 50.0%
! GAAATCGCTGCTTTCGGTGG+TGG - chr1_2:45626724-45626743 None:intergenic 55.0%
! GGTGAAATCGCTGCTTTCGG+TGG - chr1_2:45626727-45626746 None:intergenic 55.0%
TTCTGTGCCTTCGTCTTCGG+AGG - chr1_2:45626748-45626767 None:intergenic 55.0%
GGCACAGAAGATTACCGTCG+CGG + chr1_2:45626759-45626778 Msa0072580:CDS 55.0%
ACAGAAGATTACCGTCGCGG+TGG + chr1_2:45626762-45626781 Msa0072580:CDS 55.0%
ATCGGCGATACCTTCAGCTC+CGG + chr1_2:45626801-45626820 Msa0072580:CDS 55.0%
GACATAACGACCGGAGCTGA+AGG - chr1_2:45626814-45626833 None:intergenic 55.0%
! TCTCCACTGTTTGGCTCGCT+TGG + chr1_2:45626862-45626881 Msa0072580:CDS 55.0%
! CTCCACTGTTTGGCTCGCTT+GGG + chr1_2:45626863-45626882 Msa0072580:CDS 55.0%
ATCCCAAGCGAGCCAAACAG+TGG - chr1_2:45626868-45626887 None:intergenic 55.0%
GCAAGCAGCTCATGGATGTG+CGG + chr1_2:45628400-45628419 Msa0072580:CDS 55.0%
AGCTCATGGATGTGCGGAGA+AGG + chr1_2:45628406-45628425 Msa0072580:CDS 55.0%
TCATGGATGTGCGGAGAAGG+AGG + chr1_2:45628409-45628428 Msa0072580:CDS 55.0%
!! AAGACAGTATCGGTGCCCAG+AGG + chr1_2:45628694-45628713 Msa0072580:CDS 55.0%
GGCAGACCAGAAACAAGTCG+AGG + chr1_2:45630738-45630757 Msa0072580:intron 55.0%
AAGCGAAAGAGAGGGGAAGG+AGG + chr1_2:45630996-45631015 Msa0072580:intron 55.0%
GGAAGTCATTTGTGGGGGGA+AGG - chr1_2:45631072-45631091 None:intergenic 55.0%
GGTGGGAAGTCATTTGTGGG+GGG - chr1_2:45631076-45631095 None:intergenic 55.0%
CGTGCCTTATCCAATCAGGC+TGG - chr1_2:45631137-45631156 None:intergenic 55.0%
TCTTGGAATGATGCCGCGGA+AGG + chr1_2:45631879-45631898 Msa0072580:CDS 55.0%
! ATATCCGTCGGCTGCGATTC+TGG + chr1_2:45632040-45632059 Msa0072580:CDS 55.0%
CCTGAGAAACGACCTACAGC+CGG + chr1_2:45632156-45632175 Msa0072580:CDS 55.0%
!! CGGATGTAGCAGGCATTGAC+CGG - chr1_2:45632178-45632197 None:intergenic 55.0%
GTCAATGCCTGCTACATCCG+TGG + chr1_2:45632178-45632197 Msa0072580:CDS 55.0%
CGGGGACCTACATTCATCCA+CGG - chr1_2:45632198-45632217 None:intergenic 55.0%
CAAAGATGAGAGGGAGGCCA+TGG + chr1_2:45632296-45632315 Msa0072580:CDS 55.0%
TGAACTACTTGCGGCTGCCT+TGG - chr1_2:45632395-45632414 None:intergenic 55.0%
CACGCACATCATTGGGCATG+CGG - chr1_2:45632464-45632483 None:intergenic 55.0%
GGCTACCACGCCGTTCGAAT+CGG + chr1_2:45626783-45626802 Msa0072580:CDS 60.0%
!! TATCGCCGATTCGAACGGCG+TGG - chr1_2:45626791-45626810 None:intergenic 60.0%
GCATTACACAGAGGCTGCCC+TGG + chr1_2:45627920-45627939 Msa0072580:CDS 60.0%
CGGTGCCCAGAGGTTATCCT+TGG + chr1_2:45628704-45628723 Msa0072580:CDS 60.0%
!! CACTAGGGGGGCGTTATTCC+CGG + chr1_2:45631986-45632005 Msa0072580:CDS 60.0%
!! ACTAGGGGGGCGTTATTCCC+GGG + chr1_2:45631987-45632006 Msa0072580:CDS 60.0%
CCGGCTGTAGGTCGTTTCTC+AGG - chr1_2:45632159-45632178 None:intergenic 60.0%
!! AGCAGGCATTGACCGGCTGT+AGG - chr1_2:45632171-45632190 None:intergenic 60.0%
AGATGAGAGGGAGGCCATGG+AGG + chr1_2:45632299-45632318 Msa0072580:CDS 60.0%
GAGGCCATGGAGGCTGGAAT+TGG + chr1_2:45632309-45632328 Msa0072580:CDS 60.0%
AGGGCCAGAATCGCAGCCGA+CGG - chr1_2:45632047-45632066 None:intergenic 65.0%
GAGAGGGAGGCCATGGAGGC+TGG + chr1_2:45632303-45632322 Msa0072580:CDS 70.0%
CGGCGTGGTAGCCACCGCGA+CGG - chr1_2:45626776-45626795 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45626538 45632797 45626538 ID=Msa0072580;Name=Msa0072580
chr1_2 mRNA 45626538 45632797 45626538 ID=Msa0072580-mRNA-1;Parent=Msa0072580;Name=Msa0072580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=161|1|1|1|1|1|4|387|544
chr1_2 exon 45626538 45626899 45626538 ID=Msa0072580-mRNA-1:exon:13761;Parent=Msa0072580-mRNA-1
chr1_2 exon 45627885 45628841 45627885 ID=Msa0072580-mRNA-1:exon:13762;Parent=Msa0072580-mRNA-1
chr1_2 exon 45631853 45631900 45631853 ID=Msa0072580-mRNA-1:exon:13763;Parent=Msa0072580-mRNA-1
chr1_2 exon 45631982 45632797 45631982 ID=Msa0072580-mRNA-1:exon:13764;Parent=Msa0072580-mRNA-1
chr1_2 five_prime_UTR 45626538 45626698 45626538 ID=Msa0072580-mRNA-1:five_prime_utr;Parent=Msa0072580-mRNA-1
chr1_2 CDS 45626699 45626899 45626699 ID=Msa0072580-mRNA-1:cds;Parent=Msa0072580-mRNA-1
chr1_2 CDS 45627885 45628841 45627885 ID=Msa0072580-mRNA-1:cds;Parent=Msa0072580-mRNA-1
chr1_2 CDS 45631853 45631900 45631853 ID=Msa0072580-mRNA-1:cds;Parent=Msa0072580-mRNA-1
chr1_2 CDS 45631982 45632410 45631982 ID=Msa0072580-mRNA-1:cds;Parent=Msa0072580-mRNA-1
chr1_2 three_prime_UTR 45632411 45632797 45632411 ID=Msa0072580-mRNA-1:three_prime_utr;Parent=Msa0072580-mRNA-1
Gene Sequence

>Msa0072580

ATGGGTGGCGGACACGACGATACCACCACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGCACAGAAGATTACCGTCGCGGTGGCTACCACGCCGTTCGAATCGGCGATACCTTCAGCTCCGGTCGTTATGTCGTTCAGAGCAAGCTTGGTTGGGGTCATTTCTCCACTGTTTGGCTCGCTTGGGATTCCCATCATTCTAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCATTACACAGAGGCTGCCCTGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGTGACACTGATGATAAAAAATGTGTGGTCAAGCTTTTAGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAGTACCTTGGGGATAACCTATTAACTCTTATTAAGTATAGTGATTATCACGGATTGCCTATCAATATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTAAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAGGATCCCAGGAAATCTGGTGCTCCTCTTATTCTTCCTAACAGTAAAGACAAGACTATGCTGGAGTCAACGACTGCAAGAGACACTAAAACATCAAATGGAGATTTTATTAAGAATCATAAGAAAAATATTAAGAGAAAAGCCAAGCAAGCAGCTCATGGATGTGCGGAGAAGGAGGCATCTGAAGATGGTAATCATGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCAAGAGAACAAGCTTCTAGTTCTGCTGGCACTAGTAGGTTATCAGATGCGGATGGAATGAAGTCAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCACAGTGAGACAGAAACTGCTTGCCTCAGCTGATGTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATTCAGACAAGACAGTATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCTGCGGATCTTTGGTCATTTGCTTGCATATGTTTTGAGCTTGCAACTGGAGATGTATTATTTGATCCTCATAGTGGTGACAACTTTGATAGGGACGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCGCGGAAGATCGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGATATGGTGATTTGAGACATATCCGTCGGCTGCGATTCTGGCCCTTAAATAAAGTGCTTATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAACGACCTACAGCCGGTCAATGCCTGCTACATCCGTGGATGAATGTAGGTCCCCGTCTTTTGGAGCCATCAATGCCGTCTTCTAATCACAACCCTGGTGCTGAAACTGCTACTTCTGACCAGAAGAACAAGGACAAAGATGAGAGGGAGGCCATGGAGGCTGGAATTGGAAACATTGCTATCAATTCAGATTCTAAACCACTCATGCATTCTCCATCAAAGAAAGTATTCCAAGGCAGCCGCAAGTAG
Protein sequence

>Msa0072580

MGGGHDDTTTESSDFTSEDEGTEDYRRGGYHAVRIGDTFSSGRYVVQSKLGWGHFSTVWLAWDSHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYHGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTTARDTKTSNGDFIKNHKKNIKRKAKQAAHGCAEKEASEDGNHETSGAVESSPNASSAREQASSSAGTSRLSDADGMKSKEQGNRRGSRTVRQKLLASADVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNVGPRLLEPSMPSSNHNPGAETATSDQKNKDKDEREAMEAGIGNIAINSDSKPLMHSPSKKVFQGSRK*