AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGGAGCTGCTGCAGAGAT+TGG 0.357540 1_1:+49537037 Msa0025920:CDS
CTGCTAGATCGGAGATGGGC+CGG 0.378849 1_1:+49537014 Msa0025920:CDS
CGGGGCTGCTAGATCGGAGA+TGG 0.432256 1_1:+49537009 Msa0025920:CDS
TTAACATGAGGTGGCGGCTC+CGG 0.443891 1_1:-49538795 None:intergenic
TGAGGTGGCGGCTCCGGTGG+AGG 0.479910 1_1:-49538789 None:intergenic
CTCATGCAAGAAACGGTTGA+TGG 0.480355 1_1:+49537569 Msa0025920:CDS
AAAAGATGTCCAATGTCAAA+TGG 0.485689 1_1:+49537475 Msa0025920:CDS
TGCTAGATCGGAGATGGGCC+GGG 0.486001 1_1:+49537015 Msa0025920:CDS
AGGTGACGGGGCTGCTAGAT+CGG 0.496214 1_1:+49537003 Msa0025920:CDS
ACATGAGGTGGCGGCTCCGG+TGG 0.498514 1_1:-49538792 None:intergenic
CGGCTCCGGTGGAGGACAAT+CGG 0.499253 1_1:-49538781 None:intergenic
GTGCATGATCATAGTATACT+TGG 0.505626 1_1:-49537106 None:intergenic
CTGAATATGTCGAAGTGAAA+GGG 0.506298 1_1:+49537499 Msa0025920:CDS
TTCCTCGCTCATGCAAGAAA+CGG 0.534516 1_1:+49537562 Msa0025920:CDS
TCTGAATATGTCGAAGTGAA+AGG 0.539318 1_1:+49537498 Msa0025920:CDS
GACAATCGGTCGAGACAGAG+AGG 0.544413 1_1:-49538767 None:intergenic
ATATTCAGACCATTTGACAT+TGG 0.548689 1_1:-49537484 None:intergenic
CTCGACCGATTGTCCTCCAC+CGG 0.551748 1_1:+49538776 Msa0025920:CDS
AGTTGCGCAAAGGAGGTGAC+GGG 0.556812 1_1:+49536990 Msa0025920:CDS
AAGTTGCGCAAAGGAGGTGA+CGG 0.559484 1_1:+49536989 Msa0025920:CDS
ATCTATTTAACATGAGGTGG+CGG 0.567792 1_1:-49538801 None:intergenic
TCTCTGCAGCAGCTCCGTCC+CGG 0.570077 1_1:-49537033 None:intergenic
GCTGCTGCAGAGATTGGAGA+TGG 0.571294 1_1:+49537043 Msa0025920:CDS
CTTCAAAAGTTGCGCAAAGG+AGG 0.573380 1_1:+49536983 Msa0025920:CDS
AACCGTTTCTTGCATGAGCG+AGG 0.574230 1_1:-49537564 None:intergenic
GAGATCTATTTAACATGAGG+TGG 0.586777 1_1:-49538804 None:intergenic
AGATCGGAGATGGGCCGGGA+CGG 0.593534 1_1:+49537019 Msa0025920:CDS
GGGGCTGCTAGATCGGAGAT+GGG 0.600787 1_1:+49537010 Msa0025920:CDS
CAAGAGATCTATTTAACATG+AGG 0.609119 1_1:-49538807 None:intergenic
TACCTTCAAAAGTTGCGCAA+AGG 0.612577 1_1:+49536980 Msa0025920:CDS
ATCGGTCGAGACAGAGAGGG+TGG 0.646361 1_1:-49538763 None:intergenic
ACAATCGGTCGAGACAGAGA+GGG 0.695260 1_1:-49538766 None:intergenic
GTTGCGCAAAGGAGGTGACG+GGG 0.703235 1_1:+49536991 Msa0025920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATATATCGATTATA+TGG - chr1_1:49538244-49538263 None:intergenic 10.0%
!! ATATAATCGATATATAAAAA+TGG + chr1_1:49538243-49538262 Msa0025920:intron 10.0%
!!! ATTTTTATATATCGATTATA+TGG - chr1_1:49538244-49538263 None:intergenic 10.0%
!! ATATAATCGATATATAAAAA+TGG + chr1_1:49538243-49538262 Msa0025920:intron 10.0%
!!! ATTCTAAAAAACAATTTTTG+TGG - chr1_1:49537154-49537173 None:intergenic 15.0%
!! AGATAAATATGAAGTTAAAT+AGG - chr1_1:49537669-49537688 None:intergenic 15.0%
!!! CGATAACTATTTTATTTATT+TGG + chr1_1:49538183-49538202 Msa0025920:intron 15.0%
!!! TATTTGGATCTTTAAATTTT+AGG + chr1_1:49538199-49538218 Msa0025920:intron 15.0%
!!! ATTTGGATCTTTAAATTTTA+GGG + chr1_1:49538200-49538219 Msa0025920:intron 15.0%
!! AAACTAAATGAATAATTTCA+GGG - chr1_1:49538332-49538351 None:intergenic 15.0%
!!! ATTCTAAAAAACAATTTTTG+TGG - chr1_1:49537154-49537173 None:intergenic 15.0%
!! AGATAAATATGAAGTTAAAT+AGG - chr1_1:49537669-49537688 None:intergenic 15.0%
!!! CGATAACTATTTTATTTATT+TGG + chr1_1:49538183-49538202 Msa0025920:intron 15.0%
!!! TATTTGGATCTTTAAATTTT+AGG + chr1_1:49538199-49538218 Msa0025920:intron 15.0%
!!! ATTTGGATCTTTAAATTTTA+GGG + chr1_1:49538200-49538219 Msa0025920:intron 15.0%
!! AAACTAAATGAATAATTTCA+GGG - chr1_1:49538332-49538351 None:intergenic 15.0%
!!! AAAAAACAATTTTTGTGGAT+GGG - chr1_1:49537149-49537168 None:intergenic 20.0%
!!! TAAAAAACAATTTTTGTGGA+TGG - chr1_1:49537150-49537169 None:intergenic 20.0%
!!! TAATATAATTGAAGCACTAA+TGG + chr1_1:49537244-49537263 Msa0025920:intron 20.0%
!! CAATAACACATTTAAAGATA+AGG - chr1_1:49537440-49537459 None:intergenic 20.0%
!! AATAATGCCTAGTAATTTAT+TGG + chr1_1:49537868-49537887 Msa0025920:intron 20.0%
!! TTTCTTTAATATGTTATGTG+TGG + chr1_1:49537940-49537959 Msa0025920:intron 20.0%
!!! TTTATATATCGATTATATGG+AGG - chr1_1:49538241-49538260 None:intergenic 20.0%
!! GAAACTAAATGAATAATTTC+AGG - chr1_1:49538333-49538352 None:intergenic 20.0%
!!! AAAAAACAATTTTTGTGGAT+GGG - chr1_1:49537149-49537168 None:intergenic 20.0%
!!! TAAAAAACAATTTTTGTGGA+TGG - chr1_1:49537150-49537169 None:intergenic 20.0%
!!! TAATATAATTGAAGCACTAA+TGG + chr1_1:49537244-49537263 Msa0025920:intron 20.0%
!! CAATAACACATTTAAAGATA+AGG - chr1_1:49537440-49537459 None:intergenic 20.0%
!! AATAATGCCTAGTAATTTAT+TGG + chr1_1:49537868-49537887 Msa0025920:intron 20.0%
!! TTTCTTTAATATGTTATGTG+TGG + chr1_1:49537940-49537959 Msa0025920:intron 20.0%
!!! TTTATATATCGATTATATGG+AGG - chr1_1:49538241-49538260 None:intergenic 20.0%
!! GAAACTAAATGAATAATTTC+AGG - chr1_1:49538333-49538352 None:intergenic 20.0%
! TCGATAAAGATATCTACATT+TGG - chr1_1:49537202-49537221 None:intergenic 25.0%
! TGGCAAAATTAAATAAGAGA+AGG + chr1_1:49537264-49537283 Msa0025920:intron 25.0%
!! GATTAATTACCTTTGAAAGA+AGG - chr1_1:49537368-49537387 None:intergenic 25.0%
!!! ATAATGATGGAAACTTGTTA+TGG - chr1_1:49537742-49537761 None:intergenic 25.0%
! TAACAAGTTTCCATCATTAT+AGG + chr1_1:49537742-49537761 Msa0025920:intron 25.0%
! TTTAATATGTTATGTGTGGA+AGG + chr1_1:49537944-49537963 Msa0025920:intron 25.0%
! TTGATAGAAAATCTAGACAT+AGG - chr1_1:49538303-49538322 None:intergenic 25.0%
! ACAAATCTGAATTTCTTAGT+GGG - chr1_1:49538707-49538726 None:intergenic 25.0%
! TACAAATCTGAATTTCTTAG+TGG - chr1_1:49538708-49538727 None:intergenic 25.0%
! TCGATAAAGATATCTACATT+TGG - chr1_1:49537202-49537221 None:intergenic 25.0%
! TGGCAAAATTAAATAAGAGA+AGG + chr1_1:49537264-49537283 Msa0025920:intron 25.0%
!! GATTAATTACCTTTGAAAGA+AGG - chr1_1:49537368-49537387 None:intergenic 25.0%
!!! ATAATGATGGAAACTTGTTA+TGG - chr1_1:49537742-49537761 None:intergenic 25.0%
! TAACAAGTTTCCATCATTAT+AGG + chr1_1:49537742-49537761 Msa0025920:intron 25.0%
! TTTAATATGTTATGTGTGGA+AGG + chr1_1:49537944-49537963 Msa0025920:intron 25.0%
! TTGATAGAAAATCTAGACAT+AGG - chr1_1:49538303-49538322 None:intergenic 25.0%
! ACAAATCTGAATTTCTTAGT+GGG - chr1_1:49538707-49538726 None:intergenic 25.0%
! TACAAATCTGAATTTCTTAG+TGG - chr1_1:49538708-49538727 None:intergenic 25.0%
GTAATTGATAGATATGCTCT+TGG + chr1_1:49537286-49537305 Msa0025920:intron 30.0%
CAGAGTTCAATCGTAATTAA+TGG - chr1_1:49537324-49537343 None:intergenic 30.0%
! TGTGTTATTGAATTGTGTAG+TGG + chr1_1:49537450-49537469 Msa0025920:intron 30.0%
AAAAGATGTCCAATGTCAAA+TGG + chr1_1:49537475-49537494 Msa0025920:CDS 30.0%
ATATTCAGACCATTTGACAT+TGG - chr1_1:49537487-49537506 None:intergenic 30.0%
ACTATCTCCTTTGTTAATAG+GGG - chr1_1:49537620-49537639 None:intergenic 30.0%
CACTATCTCCTTTGTTAATA+GGG - chr1_1:49537621-49537640 None:intergenic 30.0%
!!! AAAGGAGATAGTGGAATTTT+AGG + chr1_1:49537628-49537647 Msa0025920:intron 30.0%
AGTTTCCATCATTATAGGAA+TGG + chr1_1:49537747-49537766 Msa0025920:intron 30.0%
CTAGTGACCAATAAATTACT+AGG - chr1_1:49537878-49537897 None:intergenic 30.0%
ACCAATTTGAATTACCATAG+AGG + chr1_1:49538051-49538070 Msa0025920:intron 30.0%
TCCTCTATGGTAATTCAAAT+TGG - chr1_1:49538055-49538074 None:intergenic 30.0%
AGAATCAATTTCATCCTCTA+TGG - chr1_1:49538068-49538087 None:intergenic 30.0%
! TAGAGGATGAAATTGATTCT+AGG + chr1_1:49538068-49538087 Msa0025920:intron 30.0%
GACAAGAGTAACATTAAGTT+GGG - chr1_1:49538375-49538394 None:intergenic 30.0%
GTAATTGATAGATATGCTCT+TGG + chr1_1:49537286-49537305 Msa0025920:intron 30.0%
CAGAGTTCAATCGTAATTAA+TGG - chr1_1:49537324-49537343 None:intergenic 30.0%
! TGTGTTATTGAATTGTGTAG+TGG + chr1_1:49537450-49537469 Msa0025920:intron 30.0%
AAAAGATGTCCAATGTCAAA+TGG + chr1_1:49537475-49537494 Msa0025920:CDS 30.0%
ATATTCAGACCATTTGACAT+TGG - chr1_1:49537487-49537506 None:intergenic 30.0%
ACTATCTCCTTTGTTAATAG+GGG - chr1_1:49537620-49537639 None:intergenic 30.0%
CACTATCTCCTTTGTTAATA+GGG - chr1_1:49537621-49537640 None:intergenic 30.0%
!!! AAAGGAGATAGTGGAATTTT+AGG + chr1_1:49537628-49537647 Msa0025920:intron 30.0%
AGTTTCCATCATTATAGGAA+TGG + chr1_1:49537747-49537766 Msa0025920:intron 30.0%
CTAGTGACCAATAAATTACT+AGG - chr1_1:49537878-49537897 None:intergenic 30.0%
ACCAATTTGAATTACCATAG+AGG + chr1_1:49538051-49538070 Msa0025920:intron 30.0%
TCCTCTATGGTAATTCAAAT+TGG - chr1_1:49538055-49538074 None:intergenic 30.0%
AGAATCAATTTCATCCTCTA+TGG - chr1_1:49538068-49538087 None:intergenic 30.0%
! TAGAGGATGAAATTGATTCT+AGG + chr1_1:49538068-49538087 Msa0025920:intron 30.0%
GACAAGAGTAACATTAAGTT+GGG - chr1_1:49538375-49538394 None:intergenic 30.0%
GTGCATGATCATAGTATACT+TGG - chr1_1:49537109-49537128 None:intergenic 35.0%
! TATCGAGTTTGAAGCACTAA+TGG + chr1_1:49537216-49537235 Msa0025920:intron 35.0%
GGCAATTGTAGAAACAGTTA+GGG - chr1_1:49537347-49537366 None:intergenic 35.0%
AGGCAATTGTAGAAACAGTT+AGG - chr1_1:49537348-49537367 None:intergenic 35.0%
CTACAATTGCCTTCTTTCAA+AGG + chr1_1:49537356-49537375 Msa0025920:intron 35.0%
TCTGAATATGTCGAAGTGAA+AGG + chr1_1:49537498-49537517 Msa0025920:CDS 35.0%
CTGAATATGTCGAAGTGAAA+GGG + chr1_1:49537499-49537518 Msa0025920:CDS 35.0%
!! CGGTTGATGGTAAGAAAAAT+AGG + chr1_1:49537582-49537601 Msa0025920:intron 35.0%
CCACTATCTCCTTTGTTAAT+AGG - chr1_1:49537622-49537641 None:intergenic 35.0%
CCTATTAACAAAGGAGATAG+TGG + chr1_1:49537619-49537638 Msa0025920:intron 35.0%
GCTATTGAAGTCCTGATTAT+TGG + chr1_1:49537773-49537792 Msa0025920:intron 35.0%
TATATCAGGGTCCAATAATC+AGG - chr1_1:49537787-49537806 None:intergenic 35.0%
CAGCATGAGTTTATCAACTA+CGG + chr1_1:49537836-49537855 Msa0025920:intron 35.0%
AGATCCTTCTTTCCAATACA+GGG - chr1_1:49538100-49538119 None:intergenic 35.0%
AAGATCCTTCTTTCCAATAC+AGG - chr1_1:49538101-49538120 None:intergenic 35.0%
AAAGAAGGATCTTCAAGACT+TGG + chr1_1:49538108-49538127 Msa0025920:intron 35.0%
! TATCGATTATATGGAGGACT+AGG - chr1_1:49538235-49538254 None:intergenic 35.0%
GGACAAGAGTAACATTAAGT+TGG - chr1_1:49538376-49538395 None:intergenic 35.0%
TCTCTCTCTAACTTTCTATC+AGG - chr1_1:49538397-49538416 None:intergenic 35.0%
ATAGAAAGTTAGAGAGAGAG+AGG + chr1_1:49538398-49538417 Msa0025920:intron 35.0%
GTGCATGATCATAGTATACT+TGG - chr1_1:49537109-49537128 None:intergenic 35.0%
! TATCGAGTTTGAAGCACTAA+TGG + chr1_1:49537216-49537235 Msa0025920:intron 35.0%
GGCAATTGTAGAAACAGTTA+GGG - chr1_1:49537347-49537366 None:intergenic 35.0%
AGGCAATTGTAGAAACAGTT+AGG - chr1_1:49537348-49537367 None:intergenic 35.0%
CTACAATTGCCTTCTTTCAA+AGG + chr1_1:49537356-49537375 Msa0025920:intron 35.0%
TCTGAATATGTCGAAGTGAA+AGG + chr1_1:49537498-49537517 Msa0025920:CDS 35.0%
CTGAATATGTCGAAGTGAAA+GGG + chr1_1:49537499-49537518 Msa0025920:CDS 35.0%
!! CGGTTGATGGTAAGAAAAAT+AGG + chr1_1:49537582-49537601 Msa0025920:intron 35.0%
CCACTATCTCCTTTGTTAAT+AGG - chr1_1:49537622-49537641 None:intergenic 35.0%
CCTATTAACAAAGGAGATAG+TGG + chr1_1:49537619-49537638 Msa0025920:intron 35.0%
GCTATTGAAGTCCTGATTAT+TGG + chr1_1:49537773-49537792 Msa0025920:intron 35.0%
TATATCAGGGTCCAATAATC+AGG - chr1_1:49537787-49537806 None:intergenic 35.0%
CAGCATGAGTTTATCAACTA+CGG + chr1_1:49537836-49537855 Msa0025920:intron 35.0%
AGATCCTTCTTTCCAATACA+GGG - chr1_1:49538100-49538119 None:intergenic 35.0%
AAGATCCTTCTTTCCAATAC+AGG - chr1_1:49538101-49538120 None:intergenic 35.0%
AAAGAAGGATCTTCAAGACT+TGG + chr1_1:49538108-49538127 Msa0025920:intron 35.0%
! TATCGATTATATGGAGGACT+AGG - chr1_1:49538235-49538254 None:intergenic 35.0%
GGACAAGAGTAACATTAAGT+TGG - chr1_1:49538376-49538395 None:intergenic 35.0%
TCTCTCTCTAACTTTCTATC+AGG - chr1_1:49538397-49538416 None:intergenic 35.0%
ATAGAAAGTTAGAGAGAGAG+AGG + chr1_1:49538398-49538417 Msa0025920:intron 35.0%
TACCTTCAAAAGTTGCGCAA+AGG + chr1_1:49536980-49536999 Msa0025920:CDS 40.0%
! GATCGCGACATAACTGTTTT+TGG + chr1_1:49537065-49537084 Msa0025920:CDS 40.0%
TCTCCTTTGTTAATAGGGGT+GGG - chr1_1:49537616-49537635 None:intergenic 40.0%
ATCTCCTTTGTTAATAGGGG+TGG - chr1_1:49537617-49537636 None:intergenic 40.0%
GCATGCCATTCCTATAATGA+TGG - chr1_1:49537755-49537774 None:intergenic 40.0%
!! CGTAGTTGATAAACTCATGC+TGG - chr1_1:49537838-49537857 None:intergenic 40.0%
AGGATCTTCAAGACTTGGAT+TGG + chr1_1:49538113-49538132 Msa0025920:intron 40.0%
! TCTTCAAGACTTGGATTGGA+AGG + chr1_1:49538117-49538136 Msa0025920:intron 40.0%
! TGGATTGGAAGGCATAGAAA+AGG + chr1_1:49538128-49538147 Msa0025920:intron 40.0%
TAAGGGAAAACCTAGAGAGA+AGG - chr1_1:49538429-49538448 None:intergenic 40.0%
AAGTGAACCTTCTGAGTAGA+GGG - chr1_1:49538532-49538551 None:intergenic 40.0%
TAGCCAAATCGAAATCTGGA+TGG - chr1_1:49538584-49538603 None:intergenic 40.0%
CCATTGATGTTGTTGACGAA+GGG - chr1_1:49538659-49538678 None:intergenic 40.0%
CCTTCGTCAACAACATCAAT+GGG + chr1_1:49538657-49538676 Msa0025920:intron 40.0%
GGATCGGTACATTAGAGTAA+TGG - chr1_1:49538737-49538756 None:intergenic 40.0%
TACCTTCAAAAGTTGCGCAA+AGG + chr1_1:49536980-49536999 Msa0025920:CDS 40.0%
! GATCGCGACATAACTGTTTT+TGG + chr1_1:49537065-49537084 Msa0025920:CDS 40.0%
TCTCCTTTGTTAATAGGGGT+GGG - chr1_1:49537616-49537635 None:intergenic 40.0%
ATCTCCTTTGTTAATAGGGG+TGG - chr1_1:49537617-49537636 None:intergenic 40.0%
GCATGCCATTCCTATAATGA+TGG - chr1_1:49537755-49537774 None:intergenic 40.0%
!! CGTAGTTGATAAACTCATGC+TGG - chr1_1:49537838-49537857 None:intergenic 40.0%
AGGATCTTCAAGACTTGGAT+TGG + chr1_1:49538113-49538132 Msa0025920:intron 40.0%
! TCTTCAAGACTTGGATTGGA+AGG + chr1_1:49538117-49538136 Msa0025920:intron 40.0%
! TGGATTGGAAGGCATAGAAA+AGG + chr1_1:49538128-49538147 Msa0025920:intron 40.0%
TAAGGGAAAACCTAGAGAGA+AGG - chr1_1:49538429-49538448 None:intergenic 40.0%
AAGTGAACCTTCTGAGTAGA+GGG - chr1_1:49538532-49538551 None:intergenic 40.0%
TAGCCAAATCGAAATCTGGA+TGG - chr1_1:49538584-49538603 None:intergenic 40.0%
CCATTGATGTTGTTGACGAA+GGG - chr1_1:49538659-49538678 None:intergenic 40.0%
CCTTCGTCAACAACATCAAT+GGG + chr1_1:49538657-49538676 Msa0025920:intron 40.0%
GGATCGGTACATTAGAGTAA+TGG - chr1_1:49538737-49538756 None:intergenic 40.0%
! CTCCTTTGCGCAACTTTTGA+AGG - chr1_1:49536985-49537004 None:intergenic 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG + chr1_1:49536983-49537002 Msa0025920:CDS 45.0%
TTCCTCGCTCATGCAAGAAA+CGG + chr1_1:49537562-49537581 Msa0025920:CDS 45.0%
CTCATGCAAGAAACGGTTGA+TGG + chr1_1:49537569-49537588 Msa0025920:CDS 45.0%
GTTCCCACCCCTATTAACAA+AGG + chr1_1:49537610-49537629 Msa0025920:intron 45.0%
TCTAGGTAGTCTCCCTGTAT+TGG + chr1_1:49538085-49538104 Msa0025920:intron 45.0%
GTCTCCCTGTATTGGAAAGA+AGG + chr1_1:49538093-49538112 Msa0025920:intron 45.0%
AGGTCTCCAATGATATGGAG+GGG - chr1_1:49538464-49538483 None:intergenic 45.0%
GAGGTCTCCAATGATATGGA+GGG - chr1_1:49538465-49538484 None:intergenic 45.0%
AGTGAACCTTCTGAGTAGAG+GGG - chr1_1:49538531-49538550 None:intergenic 45.0%
GAAGTGAACCTTCTGAGTAG+AGG - chr1_1:49538533-49538552 None:intergenic 45.0%
! ATCGAAATCTGGATGGTGGT+GGG - chr1_1:49538577-49538596 None:intergenic 45.0%
! AATCGAAATCTGGATGGTGG+TGG - chr1_1:49538578-49538597 None:intergenic 45.0%
CCAAATCGAAATCTGGATGG+TGG - chr1_1:49538581-49538600 None:intergenic 45.0%
CCACCATCCAGATTTCGATT+TGG + chr1_1:49538578-49538597 Msa0025920:intron 45.0%
GTGGTAGCCAAATCGAAATC+TGG - chr1_1:49538588-49538607 None:intergenic 45.0%
ATGTTGTTGACGAAGGGATC+TGG - chr1_1:49538653-49538672 None:intergenic 45.0%
CCCTTCGTCAACAACATCAA+TGG + chr1_1:49538656-49538675 Msa0025920:intron 45.0%
CCCATTGATGTTGTTGACGA+AGG - chr1_1:49538660-49538679 None:intergenic 45.0%
TCGTCAACAACATCAATGGG+AGG + chr1_1:49538660-49538679 Msa0025920:intron 45.0%
! CTCCTTTGCGCAACTTTTGA+AGG - chr1_1:49536985-49537004 None:intergenic 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG + chr1_1:49536983-49537002 Msa0025920:CDS 45.0%
TTCCTCGCTCATGCAAGAAA+CGG + chr1_1:49537562-49537581 Msa0025920:CDS 45.0%
CTCATGCAAGAAACGGTTGA+TGG + chr1_1:49537569-49537588 Msa0025920:CDS 45.0%
GTTCCCACCCCTATTAACAA+AGG + chr1_1:49537610-49537629 Msa0025920:intron 45.0%
TCTAGGTAGTCTCCCTGTAT+TGG + chr1_1:49538085-49538104 Msa0025920:intron 45.0%
GTCTCCCTGTATTGGAAAGA+AGG + chr1_1:49538093-49538112 Msa0025920:intron 45.0%
AGGTCTCCAATGATATGGAG+GGG - chr1_1:49538464-49538483 None:intergenic 45.0%
GAGGTCTCCAATGATATGGA+GGG - chr1_1:49538465-49538484 None:intergenic 45.0%
AGTGAACCTTCTGAGTAGAG+GGG - chr1_1:49538531-49538550 None:intergenic 45.0%
GAAGTGAACCTTCTGAGTAG+AGG - chr1_1:49538533-49538552 None:intergenic 45.0%
! ATCGAAATCTGGATGGTGGT+GGG - chr1_1:49538577-49538596 None:intergenic 45.0%
! AATCGAAATCTGGATGGTGG+TGG - chr1_1:49538578-49538597 None:intergenic 45.0%
CCAAATCGAAATCTGGATGG+TGG - chr1_1:49538581-49538600 None:intergenic 45.0%
CCACCATCCAGATTTCGATT+TGG + chr1_1:49538578-49538597 Msa0025920:intron 45.0%
GTGGTAGCCAAATCGAAATC+TGG - chr1_1:49538588-49538607 None:intergenic 45.0%
ATGTTGTTGACGAAGGGATC+TGG - chr1_1:49538653-49538672 None:intergenic 45.0%
CCCTTCGTCAACAACATCAA+TGG + chr1_1:49538656-49538675 Msa0025920:intron 45.0%
CCCATTGATGTTGTTGACGA+AGG - chr1_1:49538660-49538679 None:intergenic 45.0%
TCGTCAACAACATCAATGGG+AGG + chr1_1:49538660-49538679 Msa0025920:intron 45.0%
!! TATCTAAAAATATAAAAAAT+AGG + chr1_1:49537684-49537703 Msa0025920:intron 5.0%
!!! TTATTTTATTTTTTATATCA+GGG - chr1_1:49537800-49537819 None:intergenic 5.0%
!!! TTTATTTTATTTTTTATATC+AGG - chr1_1:49537801-49537820 None:intergenic 5.0%
!! TATCTAAAAATATAAAAAAT+AGG + chr1_1:49537684-49537703 Msa0025920:intron 5.0%
!!! TTATTTTATTTTTTATATCA+GGG - chr1_1:49537800-49537819 None:intergenic 5.0%
!!! TTTATTTTATTTTTTATATC+AGG - chr1_1:49537801-49537820 None:intergenic 5.0%
AAGTTGCGCAAAGGAGGTGA+CGG + chr1_1:49536989-49537008 Msa0025920:CDS 50.0%
AACCGTTTCTTGCATGAGCG+AGG - chr1_1:49537567-49537586 None:intergenic 50.0%
AGGGGCGGAACATAAGCTAA+GGG - chr1_1:49538446-49538465 None:intergenic 50.0%
TCTCCAATGATATGGAGGGG+CGG - chr1_1:49538461-49538480 None:intergenic 50.0%
GGAGGTCTCCAATGATATGG+AGG - chr1_1:49538466-49538485 None:intergenic 50.0%
AGAGGGGAAAACCTCCATTG+CGG - chr1_1:49538494-49538513 None:intergenic 50.0%
! GGTTTTCCCCTCTGCAATAG+AGG + chr1_1:49538501-49538520 Msa0025920:intron 50.0%
GTGAACCTTCTGAGTAGAGG+GGG - chr1_1:49538530-49538549 None:intergenic 50.0%
!! TCTGGATGGTGGTGGGAATA+GGG - chr1_1:49538570-49538589 None:intergenic 50.0%
!! ATCTGGATGGTGGTGGGAAT+AGG - chr1_1:49538571-49538590 None:intergenic 50.0%
TGTAGCAAGAGGAGTGATGG+TGG - chr1_1:49538615-49538634 None:intergenic 50.0%
!! TATGGGTTGGCTGTAGCAAG+AGG - chr1_1:49538626-49538645 None:intergenic 50.0%
! CGAAGGGATCTGGTGGATAT+GGG - chr1_1:49538643-49538662 None:intergenic 50.0%
! ACGAAGGGATCTGGTGGATA+TGG - chr1_1:49538644-49538663 None:intergenic 50.0%
TTGTTGACGAAGGGATCTGG+TGG - chr1_1:49538650-49538669 None:intergenic 50.0%
ACAATCGGTCGAGACAGAGA+GGG - chr1_1:49538769-49538788 None:intergenic 50.0%
AAGTTGCGCAAAGGAGGTGA+CGG + chr1_1:49536989-49537008 Msa0025920:CDS 50.0%
AACCGTTTCTTGCATGAGCG+AGG - chr1_1:49537567-49537586 None:intergenic 50.0%
AGGGGCGGAACATAAGCTAA+GGG - chr1_1:49538446-49538465 None:intergenic 50.0%
TCTCCAATGATATGGAGGGG+CGG - chr1_1:49538461-49538480 None:intergenic 50.0%
GGAGGTCTCCAATGATATGG+AGG - chr1_1:49538466-49538485 None:intergenic 50.0%
AGAGGGGAAAACCTCCATTG+CGG - chr1_1:49538494-49538513 None:intergenic 50.0%
! GGTTTTCCCCTCTGCAATAG+AGG + chr1_1:49538501-49538520 Msa0025920:intron 50.0%
GTGAACCTTCTGAGTAGAGG+GGG - chr1_1:49538530-49538549 None:intergenic 50.0%
!! TCTGGATGGTGGTGGGAATA+GGG - chr1_1:49538570-49538589 None:intergenic 50.0%
!! ATCTGGATGGTGGTGGGAAT+AGG - chr1_1:49538571-49538590 None:intergenic 50.0%
TGTAGCAAGAGGAGTGATGG+TGG - chr1_1:49538615-49538634 None:intergenic 50.0%
!! TATGGGTTGGCTGTAGCAAG+AGG - chr1_1:49538626-49538645 None:intergenic 50.0%
! CGAAGGGATCTGGTGGATAT+GGG - chr1_1:49538643-49538662 None:intergenic 50.0%
! ACGAAGGGATCTGGTGGATA+TGG - chr1_1:49538644-49538663 None:intergenic 50.0%
TTGTTGACGAAGGGATCTGG+TGG - chr1_1:49538650-49538669 None:intergenic 50.0%
ACAATCGGTCGAGACAGAGA+GGG - chr1_1:49538769-49538788 None:intergenic 50.0%
AGTTGCGCAAAGGAGGTGAC+GGG + chr1_1:49536990-49537009 Msa0025920:CDS 55.0%
GCTGCTGCAGAGATTGGAGA+TGG + chr1_1:49537043-49537062 Msa0025920:CDS 55.0%
AGAGGCTCTGCCTTCTCTCT+AGG + chr1_1:49538416-49538435 Msa0025920:intron 55.0%
GAGGGGCGGAACATAAGCTA+AGG - chr1_1:49538447-49538466 None:intergenic 55.0%
GTTCCGCCCCTCCATATCAT+TGG + chr1_1:49538455-49538474 Msa0025920:intron 55.0%
GGGGGAGGTCTCCAATGATA+TGG - chr1_1:49538469-49538488 None:intergenic 55.0%
AAAACCTCCATTGCGGAGGG+GGG - chr1_1:49538487-49538506 None:intergenic 55.0%
GAAAACCTCCATTGCGGAGG+GGG - chr1_1:49538488-49538507 None:intergenic 55.0%
GGAAAACCTCCATTGCGGAG+GGG - chr1_1:49538489-49538508 None:intergenic 55.0%
GGGAAAACCTCCATTGCGGA+GGG - chr1_1:49538490-49538509 None:intergenic 55.0%
GGGAAGCCTCTATTGCAGAG+GGG - chr1_1:49538510-49538529 None:intergenic 55.0%
GGGGAAGCCTCTATTGCAGA+GGG - chr1_1:49538511-49538530 None:intergenic 55.0%
!! GAGGAGTGATGGTGGTGATG+TGG - chr1_1:49538607-49538626 None:intergenic 55.0%
GGCTGTAGCAAGAGGAGTGA+TGG - chr1_1:49538618-49538637 None:intergenic 55.0%
! GGGATCTGGTGGATATGGGT+TGG - chr1_1:49538639-49538658 None:intergenic 55.0%
GAGAGGGTGGCATTCTGGAT+CGG - chr1_1:49538753-49538772 None:intergenic 55.0%
AGACAGAGAGGGTGGCATTC+TGG - chr1_1:49538758-49538777 None:intergenic 55.0%
GACAATCGGTCGAGACAGAG+AGG - chr1_1:49538770-49538789 None:intergenic 55.0%
! TTAACATGAGGTGGCGGCTC+CGG - chr1_1:49538798-49538817 None:intergenic 55.0%
AGTTGCGCAAAGGAGGTGAC+GGG + chr1_1:49536990-49537009 Msa0025920:CDS 55.0%
GCTGCTGCAGAGATTGGAGA+TGG + chr1_1:49537043-49537062 Msa0025920:CDS 55.0%
AGAGGCTCTGCCTTCTCTCT+AGG + chr1_1:49538416-49538435 Msa0025920:intron 55.0%
GAGGGGCGGAACATAAGCTA+AGG - chr1_1:49538447-49538466 None:intergenic 55.0%
GTTCCGCCCCTCCATATCAT+TGG + chr1_1:49538455-49538474 Msa0025920:intron 55.0%
GGGGGAGGTCTCCAATGATA+TGG - chr1_1:49538469-49538488 None:intergenic 55.0%
AAAACCTCCATTGCGGAGGG+GGG - chr1_1:49538487-49538506 None:intergenic 55.0%
GAAAACCTCCATTGCGGAGG+GGG - chr1_1:49538488-49538507 None:intergenic 55.0%
GGAAAACCTCCATTGCGGAG+GGG - chr1_1:49538489-49538508 None:intergenic 55.0%
GGGAAAACCTCCATTGCGGA+GGG - chr1_1:49538490-49538509 None:intergenic 55.0%
GGGAAGCCTCTATTGCAGAG+GGG - chr1_1:49538510-49538529 None:intergenic 55.0%
GGGGAAGCCTCTATTGCAGA+GGG - chr1_1:49538511-49538530 None:intergenic 55.0%
!! GAGGAGTGATGGTGGTGATG+TGG - chr1_1:49538607-49538626 None:intergenic 55.0%
GGCTGTAGCAAGAGGAGTGA+TGG - chr1_1:49538618-49538637 None:intergenic 55.0%
! GGGATCTGGTGGATATGGGT+TGG - chr1_1:49538639-49538658 None:intergenic 55.0%
GAGAGGGTGGCATTCTGGAT+CGG - chr1_1:49538753-49538772 None:intergenic 55.0%
AGACAGAGAGGGTGGCATTC+TGG - chr1_1:49538758-49538777 None:intergenic 55.0%
GACAATCGGTCGAGACAGAG+AGG - chr1_1:49538770-49538789 None:intergenic 55.0%
! TTAACATGAGGTGGCGGCTC+CGG - chr1_1:49538798-49538817 None:intergenic 55.0%
GTTGCGCAAAGGAGGTGACG+GGG + chr1_1:49536991-49537010 Msa0025920:CDS 60.0%
!! AGGTGACGGGGCTGCTAGAT+CGG + chr1_1:49537003-49537022 Msa0025920:CDS 60.0%
GGGGCTGCTAGATCGGAGAT+GGG + chr1_1:49537010-49537029 Msa0025920:CDS 60.0%
CTGCTAGATCGGAGATGGGC+CGG + chr1_1:49537014-49537033 Msa0025920:CDS 60.0%
TGCTAGATCGGAGATGGGCC+GGG + chr1_1:49537015-49537034 Msa0025920:CDS 60.0%
GACGGAGCTGCTGCAGAGAT+TGG + chr1_1:49537037-49537056 Msa0025920:CDS 60.0%
GGGGAAAACCTCCATTGCGG+AGG - chr1_1:49538491-49538510 None:intergenic 60.0%
GGGGGAAGCCTCTATTGCAG+AGG - chr1_1:49538512-49538531 None:intergenic 60.0%
GGCTTCCCCCTCTACTCAGA+AGG + chr1_1:49538522-49538541 Msa0025920:intron 60.0%
ATCGGTCGAGACAGAGAGGG+TGG - chr1_1:49538766-49538785 None:intergenic 60.0%
CTCGACCGATTGTCCTCCAC+CGG + chr1_1:49538776-49538795 Msa0025920:CDS 60.0%
GTTGCGCAAAGGAGGTGACG+GGG + chr1_1:49536991-49537010 Msa0025920:CDS 60.0%
!! AGGTGACGGGGCTGCTAGAT+CGG + chr1_1:49537003-49537022 Msa0025920:CDS 60.0%
GGGGCTGCTAGATCGGAGAT+GGG + chr1_1:49537010-49537029 Msa0025920:CDS 60.0%
CTGCTAGATCGGAGATGGGC+CGG + chr1_1:49537014-49537033 Msa0025920:CDS 60.0%
TGCTAGATCGGAGATGGGCC+GGG + chr1_1:49537015-49537034 Msa0025920:CDS 60.0%
GACGGAGCTGCTGCAGAGAT+TGG + chr1_1:49537037-49537056 Msa0025920:CDS 60.0%
GGGGAAAACCTCCATTGCGG+AGG - chr1_1:49538491-49538510 None:intergenic 60.0%
GGGGGAAGCCTCTATTGCAG+AGG - chr1_1:49538512-49538531 None:intergenic 60.0%
GGCTTCCCCCTCTACTCAGA+AGG + chr1_1:49538522-49538541 Msa0025920:intron 60.0%
ATCGGTCGAGACAGAGAGGG+TGG - chr1_1:49538766-49538785 None:intergenic 60.0%
CTCGACCGATTGTCCTCCAC+CGG + chr1_1:49538776-49538795 Msa0025920:CDS 60.0%
CGGGGCTGCTAGATCGGAGA+TGG + chr1_1:49537009-49537028 Msa0025920:CDS 65.0%
AGATCGGAGATGGGCCGGGA+CGG + chr1_1:49537019-49537038 Msa0025920:CDS 65.0%
TCTCTGCAGCAGCTCCGTCC+CGG - chr1_1:49537036-49537055 None:intergenic 65.0%
CGGCTCCGGTGGAGGACAAT+CGG - chr1_1:49538784-49538803 None:intergenic 65.0%
CGGGGCTGCTAGATCGGAGA+TGG + chr1_1:49537009-49537028 Msa0025920:CDS 65.0%
AGATCGGAGATGGGCCGGGA+CGG + chr1_1:49537019-49537038 Msa0025920:CDS 65.0%
TCTCTGCAGCAGCTCCGTCC+CGG - chr1_1:49537036-49537055 None:intergenic 65.0%
CGGCTCCGGTGGAGGACAAT+CGG - chr1_1:49538784-49538803 None:intergenic 65.0%
GAGACCTCCCCCCTCCGCAA+TGG + chr1_1:49538477-49538496 Msa0025920:intron 70.0%
ACCTCCCCCCTCCGCAATGG+AGG + chr1_1:49538480-49538499 Msa0025920:intron 70.0%
ACCTCCATTGCGGAGGGGGG+AGG - chr1_1:49538484-49538503 None:intergenic 70.0%
! ACATGAGGTGGCGGCTCCGG+TGG - chr1_1:49538795-49538814 None:intergenic 70.0%
GAGACCTCCCCCCTCCGCAA+TGG + chr1_1:49538477-49538496 Msa0025920:intron 70.0%
ACCTCCCCCCTCCGCAATGG+AGG + chr1_1:49538480-49538499 Msa0025920:intron 70.0%
ACCTCCATTGCGGAGGGGGG+AGG - chr1_1:49538484-49538503 None:intergenic 70.0%
! ACATGAGGTGGCGGCTCCGG+TGG - chr1_1:49538795-49538814 None:intergenic 70.0%
! TGAGGTGGCGGCTCCGGTGG+AGG - chr1_1:49538792-49538811 None:intergenic 75.0%
! TGAGGTGGCGGCTCCGGTGG+AGG - chr1_1:49538792-49538811 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49536975 49538821 49536975 ID=Msa0025920;Name=Msa0025920
chr1_1 mRNA 49536975 49538821 49536975 ID=Msa0025920-mRNA-1;Parent=Msa0025920;Name=Msa0025920-mRNA-1;_AED=0.84;_eAED=0.86;_QI=0|0|0|0.33|0|0.33|3|0|128
chr1_1 exon 49536975 49537177 49536975 ID=Msa0025920-mRNA-1:exon:14268;Parent=Msa0025920-mRNA-1
chr1_1 exon 49537470 49537590 49537470 ID=Msa0025920-mRNA-1:exon:14269;Parent=Msa0025920-mRNA-1
chr1_1 exon 49538759 49538821 49538759 ID=Msa0025920-mRNA-1:exon:14270;Parent=Msa0025920-mRNA-1
chr1_1 CDS 49536975 49537177 49536975 ID=Msa0025920-mRNA-1:cds;Parent=Msa0025920-mRNA-1
chr1_1 CDS 49537470 49537590 49537470 ID=Msa0025920-mRNA-1:cds;Parent=Msa0025920-mRNA-1
chr1_1 CDS 49538759 49538821 49538759 ID=Msa0025920-mRNA-1:cds;Parent=Msa0025920-mRNA-1
Gene Sequence

>Msa0025920

ATGGCTACCTTCAAAAGTTGCGCAAAGGAGGTGACGGGGCTGCTAGATCGGAGATGGGCCGGGACGGAGCTGCTGCAGAGATTGGAGATGGATCGCGACATAACTGTTTTTGGTTCGATAGAACTCGCTAACCAAGTATACTATGATCATGCACTATTTTCAATTTATTTTCCCATCCACAAAAATTGTTTTTTAGAATGCAATGGTGAAAAGATGTCCAATGTCAAATGGTCTGAATATGTCGAAGTGAAAGGGAGAGTTAAATTACATGATTTCGAAAAATACATTCAAGAACTTCCTCGCTCATGCAAGAAACGGTTGATGAATGCCACCCTCTCTGTCTCGACCGATTGTCCTCCACCGGAGCCGCCACCTCATGTTAAATAG

Protein sequence

>Msa0025920

MATFKSCAKEVTGLLDRRWAGTELLQRLEMDRDITVFGSIELANQVYYDHALFSIYFPIHKNCFLECNGEKMSNVKWSEYVEVKGRVKLHDFEKYIQELPRSCKKRLMNATLSVSTDCPPPEPPPHVK*