AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026760 MtrunA17_Chr1g0182531 98.985 197 2 0 1 197 28 224 2.45e-144 400
Msa0026760 MtrunA17_Chr3g0077371 98.477 197 3 0 1 197 1 197 1.53e-143 397
Msa0026760 MtrunA17_Chr3g0077391 98.477 197 3 0 1 197 1 197 1.53e-143 397
Msa0026760 MtrunA17_Chr4g0009481 98.477 197 3 0 1 197 1 197 1.53e-143 397
Msa0026760 MtrunA17_Chr7g0241891 97.462 197 5 0 1 197 1 197 8.11e-142 393
Msa0026760 MtrunA17_Chr4g0060551 96.522 115 4 0 1 115 1 115 8.59e-77 225
Msa0026760 MtrunA17_Chr4g0009501 98.333 60 1 0 138 197 13 72 1.47e-37 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026760 AT5G39850.1 90.374 187 18 0 1 187 1 187 1.16e-123 347
Msa0026760 AT5G15200.1 84.343 198 30 1 1 197 1 198 3.25e-117 331
Msa0026760 AT5G15200.2 88.321 137 16 0 1 137 1 137 3.88e-85 248

Find 89 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCACCAGAAGCCTTCT+TGG 0.265320 1_1:-50798844 None:intergenic
TACAAACACCATTAAGTAAA+AGG 0.285041 1_1:-50799114 None:intergenic
AACTTGTATGAACAATAAAA+AGG 0.306005 1_1:-50799280 None:intergenic
CAGACACTTGTATTCAAATC+TGG 0.328033 1_1:+50797385 Msa0026760:CDS
AATAAACAAGGATAGGAAAA+TGG 0.330874 1_1:-50798979 None:intergenic
GTTTCATAGGGTTGGAAGGC+AGG 0.358634 1_1:+50798698 Msa0026760:intron
CCTTCTTGGCTGCAGACTTA+AGG 0.361217 1_1:-50798830 None:intergenic
ATCATGCTAGGGTTCTTATC+AGG 0.370005 1_1:+50797425 Msa0026760:CDS
CGATTCAACCATGCTTCATA+TGG 0.384231 1_1:+50799207 Msa0026760:three_prime_UTR
CAGAATTACAAGTTCTCAAA+AGG 0.386658 1_1:-50799241 None:intergenic
TCCTTATGAGAAGGAACGTT+TGG 0.386694 1_1:+50797108 Msa0026760:CDS
TCGAAAATCTACCTGTATTC+CGG 0.390432 1_1:+50796648 Msa0026760:five_prime_UTR
TTCGGTGCAAGAGGGAGCTT+TGG 0.394293 1_1:+50797164 Msa0026760:CDS
GCATGGTTGAATCGAAGTTT+TGG 0.398137 1_1:-50799198 None:intergenic
TCTGCAGCCAAGAAGGCTTC+TGG 0.408125 1_1:+50798837 Msa0026760:CDS
TCAAAGATCATCAAATGTAT+TGG 0.422358 1_1:-50799081 None:intergenic
ACAGATTCCTTGCATTGTTA+CGG 0.425233 1_1:-50797213 None:intergenic
TTTAAGCAAAACTCTATACT+TGG 0.430368 1_1:-50799051 None:intergenic
CAAAACAAGAAAAGCCCAAT+GGG 0.431909 1_1:+50796569 None:intergenic
GGTGAACATCCCATCCTTCA+TGG 0.437604 1_1:+50798722 Msa0026760:CDS
TCTCCTAGCCGCCGGAATAC+AGG 0.442327 1_1:-50796659 None:intergenic
TCCTTGCATTGTTACGGATA+CGG 0.449433 1_1:-50797207 None:intergenic
TTCTTTCGCTTGACGCGACC+AGG 0.452567 1_1:-50798807 None:intergenic
GGTGCAAGAGGGAGCTTTGG+AGG 0.455063 1_1:+50797167 Msa0026760:CDS
TTCGAAGAGAAGAAGAAGAA+GGG 0.459911 1_1:-50796630 None:intergenic
TTTCGAAGAGAAGAAGAAGA+AGG 0.468314 1_1:-50796631 None:intergenic
AAAATAGATACTCACAGTTC+CGG 0.468521 1_1:-50796716 None:intergenic
AGTCTAGGACAGAGAACAAA+AGG 0.472560 1_1:-50798926 None:intergenic
TTGAAGCTGGTCGGAGAGTA+CGG 0.474460 1_1:+50797139 Msa0026760:CDS
TGGTTAAAGTTGCTTTCTAC+CGG 0.476762 1_1:+50796697 Msa0026760:CDS
GAACCCTCGTCGTATCTTTG+AGG 0.479838 1_1:+50797252 Msa0026760:CDS
TCCAAACGTTCCTTCTCATA+AGG 0.485854 1_1:-50797109 None:intergenic
GAACAAACTTGATTATGTCT+TGG 0.487846 1_1:+50797327 Msa0026760:CDS
CCTAGCATGATGAATGGACT+TGG 0.491509 1_1:-50797413 None:intergenic
TGGTCGGAGAGTACGGTCTT+CGG 0.495090 1_1:+50797146 Msa0026760:CDS
TCGAAGAGAAGAAGAAGAAG+GGG 0.501087 1_1:-50796629 None:intergenic
CCTTAAGTCTGCAGCCAAGA+AGG 0.512247 1_1:+50798830 Msa0026760:CDS
AACCCTCGTCGTATCTTTGA+GGG 0.518161 1_1:+50797253 Msa0026760:CDS
TTCTGGTGGTGATGGTGATG+AGG 0.523720 1_1:+50798854 Msa0026760:CDS
AAGAACCCTAGCATGATGAA+TGG 0.528751 1_1:-50797419 None:intergenic
TCAACCCTCACCATGAAGGA+TGG 0.531047 1_1:-50798732 None:intergenic
ACCGCTTCTCTCCTAGCCGC+CGG 0.531534 1_1:-50796667 None:intergenic
CCAGGAAGACCACCACCAAA+AGG 0.535069 1_1:-50798789 None:intergenic
CCAAGTCCATTCATCATGCT+AGG 0.540233 1_1:+50797413 Msa0026760:CDS
ACTTGTATTCAAATCTGGTA+TGG 0.540887 1_1:+50797390 Msa0026760:CDS
TTCGTGTTTAAAATGTCAAG+TGG 0.546798 1_1:-50799333 None:intergenic
GATGCTAGTCGTTTCAGCAC+CGG 0.547179 1_1:-50796607 None:intergenic
GGAGAGAAGCGGTGGCGTGA+TGG 0.548481 1_1:+50796677 Msa0026760:exon
CTCGCATAATAAACAAGGAT+AGG 0.549068 1_1:-50798986 None:intergenic
TTTGGTTTCATAGGGTTGGA+AGG 0.553079 1_1:+50798694 Msa0026760:intron
TACAAGTTCTCAAAAGGCAC+AGG 0.553498 1_1:-50799235 None:intergenic
GTGCAAGAGGGAGCTTTGGA+GGG 0.553805 1_1:+50797168 Msa0026760:CDS
TGATAGAAAATCTAAAGTCT+AGG 0.553926 1_1:-50798941 None:intergenic
CTACCTGTATTCCGGCGGCT+AGG 0.556886 1_1:+50796656 Msa0026760:five_prime_UTR
CTATCCTTGTTTATTATGCG+AGG 0.560772 1_1:+50798987 Msa0026760:three_prime_UTR
CAACCCTCACCATGAAGGAT+GGG 0.569875 1_1:-50798731 None:intergenic
TGAATCAACCCTCACCATGA+AGG 0.571223 1_1:-50798736 None:intergenic
TGCAAGGAATCTGTTGACCT+TGG 0.574046 1_1:+50797222 Msa0026760:CDS
TTATCAGGCAGAGACACATC+AGG 0.576233 1_1:+50797440 Msa0026760:CDS
AGGGTGAAGCGCTATTGAGA+AGG 0.577811 1_1:+50797272 Msa0026760:CDS
TTTGGATGCTGAGTTGAAGC+TGG 0.580359 1_1:+50797126 Msa0026760:CDS
AAGAAGGCTTCTGGTGGTGA+TGG 0.583588 1_1:+50798846 Msa0026760:CDS
AGTACGGTCTTCGGTGCAAG+AGG 0.589539 1_1:+50797155 Msa0026760:CDS
CAAGTCCATTCATCATGCTA+GGG 0.590386 1_1:+50797414 Msa0026760:CDS
CATCCCATCCTTCATGGTGA+GGG 0.593258 1_1:+50798728 Msa0026760:CDS
GCCGTATCCGTAACAATGCA+AGG 0.595109 1_1:+50797206 Msa0026760:CDS
GGCGGCTAGGAGAGAAGCGG+TGG 0.597132 1_1:+50796669 Msa0026760:five_prime_UTR
GCCGCGTCGTCCTTATGAGA+AGG 0.598413 1_1:+50797099 Msa0026760:CDS
TCATAGGGTTGGAAGGCAGG+TGG 0.599698 1_1:+50798701 Msa0026760:intron
ACGAATGAAGCAATTAGTCA+TGG 0.606416 1_1:+50799351 Msa0026760:three_prime_UTR
CCAAAACAAGAAAAGCCCAA+TGG 0.606850 1_1:+50796568 None:intergenic
ACATCCCATCCTTCATGGTG+AGG 0.616704 1_1:+50798727 Msa0026760:CDS
ACGAGGGTTCTTCTCATCCA+AGG 0.618972 1_1:-50797239 None:intergenic
TGGTGGTGATGGTGATGAGG+AGG 0.622606 1_1:+50798857 Msa0026760:CDS
TTGAGAAGGATGTTTAAGCA+TGG 0.626035 1_1:+50797286 Msa0026760:CDS
GAGAACAAAAGGCTAGAGCA+AGG 0.632584 1_1:-50798915 None:intergenic
ATTTCCTCGCATAATAAACA+AGG 0.635314 1_1:-50798991 None:intergenic
GCAGCCAAGAAGGCTTCTGG+TGG 0.636584 1_1:+50798840 Msa0026760:CDS
GATGCTGAGTTGAAGCTGGT+CGG 0.640820 1_1:+50797130 Msa0026760:CDS
ATTTGAATACAAGTGTCTGA+AGG 0.654254 1_1:-50797381 None:intergenic
AGGCTACACCATATGAAGCA+TGG 0.656502 1_1:-50799215 None:intergenic
TGAATACAAGTGTCTGAAGG+CGG 0.659618 1_1:-50797378 None:intergenic
AAAATCTACCTGTATTCCGG+CGG 0.683878 1_1:+50796651 Msa0026760:five_prime_UTR
GTACGGTCTTCGGTGCAAGA+GGG 0.685910 1_1:+50797156 Msa0026760:CDS
TCCGGCGGCTAGGAGAGAAG+CGG 0.695496 1_1:+50796666 Msa0026760:five_prime_UTR
TCACCCTCAAAGATACGACG+AGG 0.726164 1_1:-50797256 None:intergenic
AAAACAAGAAAAGCCCAATG+GGG 0.736925 1_1:+50796570 None:intergenic
CACCCTCAAAGATACGACGA+GGG 0.739733 1_1:-50797255 None:intergenic
TCCTTCTCATAAGGACGACG+CGG 0.741698 1_1:-50797100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGATAATAATGAAA+TGG - chr1_1:50796742-50796761 None:intergenic 10.0%
!! AAATATGAAAAATATAAACA+AGG - chr1_1:50798589-50798608 None:intergenic 10.0%
!! AATAAATAAATAAACATTAG+GGG - chr1_1:50798627-50798646 None:intergenic 10.0%
!!! ATGTATGATAATATTATTTT+TGG + chr1_1:50798676-50798695 Msa0026760:intron 10.0%
!!! GAATTTTTCTGATTTTTTTA+TGG + chr1_1:50797507-50797526 Msa0026760:intron 15.0%
!! ATATAATTTAGTGTAATCAT+AGG - chr1_1:50798015-50798034 None:intergenic 15.0%
!!! ATCATTTTCTCAAATATTAT+CGG + chr1_1:50798033-50798052 Msa0026760:intron 15.0%
!!! AATATTATTTTTGGTTTCAT+AGG + chr1_1:50798685-50798704 Msa0026760:intron 15.0%
!!! ATATTATTTTTGGTTTCATA+GGG + chr1_1:50798686-50798705 Msa0026760:intron 15.0%
!!! TTTTTATTATAAACCCCATT+GGG - chr1_1:50796586-50796605 None:intergenic 20.0%
!!! TTTTTTATTATAAACCCCAT+TGG - chr1_1:50796587-50796606 None:intergenic 20.0%
!!! ATTATCATTAATTGATTCTG+TGG + chr1_1:50796749-50796768 Msa0026760:intron 20.0%
!!! TTCTCATTTGCTATAAAAAA+TGG - chr1_1:50797560-50797579 None:intergenic 20.0%
!!! TGTTTTTTCAAAATAATGCA+GGG - chr1_1:50797757-50797776 None:intergenic 20.0%
!!! ATGTTTTTTCAAAATAATGC+AGG - chr1_1:50797758-50797777 None:intergenic 20.0%
!! CAAAACATGTATAGAATTAA+AGG - chr1_1:50798218-50798237 None:intergenic 20.0%
!!! ATTTTTTTTGTTACTCTGAA+TGG + chr1_1:50798561-50798580 Msa0026760:intron 20.0%
!!! TTCATATTTTGTATGCTTAT+TGG + chr1_1:50798600-50798619 Msa0026760:intron 20.0%
!!! TAATTGAACCTTTTACTTAA+TGG + chr1_1:50799106-50799125 Msa0026760:three_prime_UTR 20.0%
!!! TTTGATTTTGCATATTTTGA+TGG + chr1_1:50799152-50799171 Msa0026760:three_prime_UTR 20.0%
!!! TTGATTTTGCATATTTTGAT+GGG + chr1_1:50799153-50799172 Msa0026760:three_prime_UTR 20.0%
!! AACTTGTATGAACAATAAAA+AGG - chr1_1:50799283-50799302 None:intergenic 20.0%
! TGGGGTTTATAATAAAAAAC+CGG + chr1_1:50796588-50796607 Msa0026760:five_prime_UTR 25.0%
! ATTCTTTGTTGAATTTATGC+AGG + chr1_1:50796783-50796802 Msa0026760:intron 25.0%
! TTCTTTGTTGAATTTATGCA+GGG + chr1_1:50796784-50796803 Msa0026760:intron 25.0%
!! CTCTTTTTGTAGTTGTTTAT+GGG - chr1_1:50796913-50796932 None:intergenic 25.0%
! AAAATCAACCATAAATTCTG+CGG - chr1_1:50797035-50797054 None:intergenic 25.0%
!!! AACTTGCATTTTTTTTCTAG+CGG + chr1_1:50798325-50798344 Msa0026760:intron 25.0%
!! TAGTCTTAACGAAATATGTT+TGG + chr1_1:50798651-50798670 Msa0026760:intron 25.0%
! AGTCTTAACGAAATATGTTT+GGG + chr1_1:50798652-50798671 Msa0026760:intron 25.0%
!! TGATAGAAAATCTAAAGTCT+AGG - chr1_1:50798944-50798963 None:intergenic 25.0%
! AATAAACAAGGATAGGAAAA+TGG - chr1_1:50798982-50799001 None:intergenic 25.0%
! TTTAAGCAAAACTCTATACT+TGG - chr1_1:50799054-50799073 None:intergenic 25.0%
! TCAAAGATCATCAAATGTAT+TGG - chr1_1:50799084-50799103 None:intergenic 25.0%
! TACAAACACCATTAAGTAAA+AGG - chr1_1:50799117-50799136 None:intergenic 25.0%
!!! TGATTTTGCATATTTTGATG+GGG + chr1_1:50799154-50799173 Msa0026760:three_prime_UTR 25.0%
AAAATAGATACTCACAGTTC+CGG - chr1_1:50796719-50796738 None:intergenic 30.0%
TCTTTGTTGAATTTATGCAG+GGG + chr1_1:50796785-50796804 Msa0026760:intron 30.0%
! GCTCTTTTTGTAGTTGTTTA+TGG - chr1_1:50796914-50796933 None:intergenic 30.0%
!! AAGCTACCAATTGTTTTATG+AGG - chr1_1:50797010-50797029 None:intergenic 30.0%
ATTGAATACACATACACAGA+TGG + chr1_1:50797061-50797080 Msa0026760:intron 30.0%
TTGAATACACATACACAGAT+GGG + chr1_1:50797062-50797081 Msa0026760:intron 30.0%
GAACAAACTTGATTATGTCT+TGG + chr1_1:50797327-50797346 Msa0026760:CDS 30.0%
ATTTGAATACAAGTGTCTGA+AGG - chr1_1:50797384-50797403 None:intergenic 30.0%
ACTTGTATTCAAATCTGGTA+TGG + chr1_1:50797390-50797409 Msa0026760:CDS 30.0%
!! GCTTATTTGAGTTTGTCTTT+TGG - chr1_1:50797721-50797740 None:intergenic 30.0%
GTAGATCATGTTTAGATCAT+TGG + chr1_1:50797856-50797875 Msa0026760:intron 30.0%
!! GATTATGTTTTTCTTGGTGT+CGG + chr1_1:50797967-50797986 Msa0026760:intron 30.0%
TTCTCAAATATTATCGGTCT+CGG + chr1_1:50798039-50798058 Msa0026760:intron 30.0%
TGTTTGTATTCACCAAGAAT+TGG + chr1_1:50798132-50798151 Msa0026760:intron 30.0%
!!! TTCCTGTTTTTTCCAATTCT+TGG - chr1_1:50798147-50798166 None:intergenic 30.0%
! ACAGGAAAGTATATGTGAAA+TGG + chr1_1:50798160-50798179 Msa0026760:intron 30.0%
ATATGTGAAATGGAGTATAC+AGG + chr1_1:50798170-50798189 Msa0026760:intron 30.0%
CAATATGTTCTATGTATCGA+AGG + chr1_1:50798367-50798386 Msa0026760:intron 30.0%
AACAGACAAGATCATATTAC+AGG - chr1_1:50798431-50798450 None:intergenic 30.0%
!!! TACTCAAATGTCACTGATTT+TGG + chr1_1:50798460-50798479 Msa0026760:intron 30.0%
!!! TATTTTTGGTTTCATAGGGT+TGG + chr1_1:50798690-50798709 Msa0026760:intron 30.0%
ATTTCCTCGCATAATAAACA+AGG - chr1_1:50798994-50799013 None:intergenic 30.0%
CAGAATTACAAGTTCTCAAA+AGG - chr1_1:50799244-50799263 None:intergenic 30.0%
! TTCGTGTTTAAAATGTCAAG+TGG - chr1_1:50799336-50799355 None:intergenic 30.0%
TTCGAAGAGAAGAAGAAGAA+GGG - chr1_1:50796633-50796652 None:intergenic 35.0%
TTTCGAAGAGAAGAAGAAGA+AGG - chr1_1:50796634-50796653 None:intergenic 35.0%
TCGAAAATCTACCTGTATTC+CGG + chr1_1:50796648-50796667 Msa0026760:five_prime_UTR 35.0%
! TGGTTAAAGTTGCTTTCTAC+CGG + chr1_1:50796697-50796716 Msa0026760:CDS 35.0%
!! ATGCAGTAGCTTTGTTAACT+AGG + chr1_1:50796825-50796844 Msa0026760:intron 35.0%
!! CTACCAATTGTTTTATGAGG+TGG - chr1_1:50797007-50797026 None:intergenic 35.0%
ACAGATTCCTTGCATTGTTA+CGG - chr1_1:50797216-50797235 None:intergenic 35.0%
TTGAGAAGGATGTTTAAGCA+TGG + chr1_1:50797286-50797305 Msa0026760:CDS 35.0%
CAGACACTTGTATTCAAATC+TGG + chr1_1:50797385-50797404 Msa0026760:CDS 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr1_1:50797731-50797750 Msa0026760:intron 35.0%
TGGTTGTCTCTAACAATGTT+TGG + chr1_1:50797876-50797895 Msa0026760:intron 35.0%
!! GTTTGGTTTGCATTGTTGTA+TGG + chr1_1:50797893-50797912 Msa0026760:intron 35.0%
! CTCCTGGATTATGTTTTTCT+TGG + chr1_1:50797961-50797980 Msa0026760:intron 35.0%
CACCAAGAAAAACATAATCC+AGG - chr1_1:50797966-50797985 None:intergenic 35.0%
CACCAAGAATTGGAAAAAAC+AGG + chr1_1:50798142-50798161 Msa0026760:intron 35.0%
!! TTCAAGTTGCCAGCAAAAAT+GGG - chr1_1:50798254-50798273 None:intergenic 35.0%
!!! TTTTTTTCTAGCGGCTGTTA+TGG + chr1_1:50798334-50798353 Msa0026760:intron 35.0%
TTCTATGTATCGAAGGTAGT+AGG + chr1_1:50798374-50798393 Msa0026760:intron 35.0%
! TCCATTGTTCAAGTAATGGA+GGG + chr1_1:50798403-50798422 Msa0026760:intron 35.0%
! TTTTCACTCACAAGTCCTTT+TGG + chr1_1:50798774-50798793 Msa0026760:CDS 35.0%
CTCGCATAATAAACAAGGAT+AGG - chr1_1:50798989-50799008 None:intergenic 35.0%
! CTATCCTTGTTTATTATGCG+AGG + chr1_1:50798987-50799006 Msa0026760:three_prime_UTR 35.0%
ACGAATGAAGCAATTAGTCA+TGG + chr1_1:50799351-50799370 Msa0026760:three_prime_UTR 35.0%
TCGAAGAGAAGAAGAAGAAG+GGG - chr1_1:50796632-50796651 None:intergenic 40.0%
AAAATCTACCTGTATTCCGG+CGG + chr1_1:50796651-50796670 Msa0026760:five_prime_UTR 40.0%
TGGCCACCTCATAAAACAAT+TGG + chr1_1:50797001-50797020 Msa0026760:intron 40.0%
TCCTTATGAGAAGGAACGTT+TGG + chr1_1:50797108-50797127 Msa0026760:CDS 40.0%
TCCAAACGTTCCTTCTCATA+AGG - chr1_1:50797112-50797131 None:intergenic 40.0%
TCCTTGCATTGTTACGGATA+CGG - chr1_1:50797210-50797229 None:intergenic 40.0%
TGAATACAAGTGTCTGAAGG+CGG - chr1_1:50797381-50797400 None:intergenic 40.0%
CAAGTCCATTCATCATGCTA+GGG + chr1_1:50797414-50797433 Msa0026760:CDS 40.0%
AAGAACCCTAGCATGATGAA+TGG - chr1_1:50797422-50797441 None:intergenic 40.0%
ATCATGCTAGGGTTCTTATC+AGG + chr1_1:50797425-50797444 Msa0026760:CDS 40.0%
AAAATAATGCAGGGCCTGTT+TGG - chr1_1:50797748-50797767 None:intergenic 40.0%
! TACTCGCTTTCTGTGTTTTG+TGG + chr1_1:50797918-50797937 Msa0026760:intron 40.0%
! ACTCGCTTTCTGTGTTTTGT+GGG + chr1_1:50797919-50797938 Msa0026760:intron 40.0%
! TCAAGTTGCCAGCAAAAATG+GGG - chr1_1:50798253-50798272 None:intergenic 40.0%
!! GTTCAAGTTGCCAGCAAAAA+TGG - chr1_1:50798255-50798274 None:intergenic 40.0%
CCATTACTTGAACAATGGAG+AGG - chr1_1:50798402-50798421 None:intergenic 40.0%
CCTCTCCATTGTTCAAGTAA+TGG + chr1_1:50798399-50798418 Msa0026760:intron 40.0%
CTCCATTGTTCAAGTAATGG+AGG + chr1_1:50798402-50798421 Msa0026760:intron 40.0%
GTGAATGAAGAGAAGAGAGA+TGG + chr1_1:50798527-50798546 Msa0026760:intron 40.0%
! TTTGGTTTCATAGGGTTGGA+AGG + chr1_1:50798694-50798713 Msa0026760:intron 40.0%
! AGTCTAGGACAGAGAACAAA+AGG - chr1_1:50798929-50798948 None:intergenic 40.0%
!! TTTTGGTTGGTTGGATACAC+AGG - chr1_1:50799184-50799203 None:intergenic 40.0%
!!! GAATCGAAGTTTTGGTTGGT+TGG - chr1_1:50799193-50799212 None:intergenic 40.0%
!! GGTTGAATCGAAGTTTTGGT+TGG - chr1_1:50799197-50799216 None:intergenic 40.0%
! GCATGGTTGAATCGAAGTTT+TGG - chr1_1:50799201-50799220 None:intergenic 40.0%
CGATTCAACCATGCTTCATA+TGG + chr1_1:50799207-50799226 Msa0026760:three_prime_UTR 40.0%
! TACAAGTTCTCAAAAGGCAC+AGG - chr1_1:50799238-50799257 None:intergenic 40.0%
TAGCTTCGCCGCAGAATTTA+TGG + chr1_1:50797024-50797043 Msa0026760:intron 45.0%
! TTTGGATGCTGAGTTGAAGC+TGG + chr1_1:50797126-50797145 Msa0026760:CDS 45.0%
TGCAAGGAATCTGTTGACCT+TGG + chr1_1:50797222-50797241 Msa0026760:CDS 45.0%
AACCCTCGTCGTATCTTTGA+GGG + chr1_1:50797253-50797272 Msa0026760:CDS 45.0%
! CCTAGCATGATGAATGGACT+TGG - chr1_1:50797416-50797435 None:intergenic 45.0%
CCAAGTCCATTCATCATGCT+AGG + chr1_1:50797413-50797432 Msa0026760:CDS 45.0%
TTATCAGGCAGAGACACATC+AGG + chr1_1:50797440-50797459 Msa0026760:CDS 45.0%
TGTCCATGTCTTTGCGTCAT+AGG + chr1_1:50798069-50798088 Msa0026760:intron 45.0%
!!! GACTAAAGCTGCTGCTTTTC+TGG + chr1_1:50798279-50798298 Msa0026760:intron 45.0%
!!! CTGCTTTTCTGGCTTTTCTC+TGG + chr1_1:50798290-50798309 Msa0026760:intron 45.0%
GCCCTCCATTACTTGAACAA+TGG - chr1_1:50798407-50798426 None:intergenic 45.0%
TGAATCAACCCTCACCATGA+AGG - chr1_1:50798739-50798758 None:intergenic 45.0%
! TCACTCACAAGTCCTTTTGG+TGG + chr1_1:50798777-50798796 Msa0026760:CDS 45.0%
GAGAACAAAAGGCTAGAGCA+AGG - chr1_1:50798918-50798937 None:intergenic 45.0%
AGGCTACACCATATGAAGCA+TGG - chr1_1:50799218-50799237 None:intergenic 45.0%
!!! ATTTTTTATTTTTTTACATT+TGG + chr1_1:50796981-50797000 Msa0026760:intron 5.0%
!! AAATAAATAAATAAACATTA+GGG - chr1_1:50798628-50798647 None:intergenic 5.0%
!! TAAATAAATAAATAAACATT+AGG - chr1_1:50798629-50798648 None:intergenic 5.0%
GATGCTAGTCGTTTCAGCAC+CGG - chr1_1:50796610-50796629 None:intergenic 50.0%
TCCTTCTCATAAGGACGACG+CGG - chr1_1:50797103-50797122 None:intergenic 50.0%
! GATGCTGAGTTGAAGCTGGT+CGG + chr1_1:50797130-50797149 Msa0026760:CDS 50.0%
TTGAAGCTGGTCGGAGAGTA+CGG + chr1_1:50797139-50797158 Msa0026760:CDS 50.0%
GCCGTATCCGTAACAATGCA+AGG + chr1_1:50797206-50797225 Msa0026760:CDS 50.0%
ACGAGGGTTCTTCTCATCCA+AGG - chr1_1:50797242-50797261 None:intergenic 50.0%
GAACCCTCGTCGTATCTTTG+AGG + chr1_1:50797252-50797271 Msa0026760:CDS 50.0%
CACCCTCAAAGATACGACGA+GGG - chr1_1:50797258-50797277 None:intergenic 50.0%
TCACCCTCAAAGATACGACG+AGG - chr1_1:50797259-50797278 None:intergenic 50.0%
! AGGGTGAAGCGCTATTGAGA+AGG + chr1_1:50797272-50797291 Msa0026760:CDS 50.0%
AATGCAGGGCCTGTTTGGAT+TGG - chr1_1:50797743-50797762 None:intergenic 50.0%
CTATGAAGCACGAACACTCC+TGG + chr1_1:50797945-50797964 Msa0026760:intron 50.0%
GCACCTATGACGCAAAGACA+TGG - chr1_1:50798075-50798094 None:intergenic 50.0%
!! TGCTACTGCCCCATTTTTGC+TGG + chr1_1:50798242-50798261 Msa0026760:intron 50.0%
GTTTCATAGGGTTGGAAGGC+AGG + chr1_1:50798698-50798717 Msa0026760:intron 50.0%
GGTGAACATCCCATCCTTCA+TGG + chr1_1:50798722-50798741 Msa0026760:CDS 50.0%
ACATCCCATCCTTCATGGTG+AGG + chr1_1:50798727-50798746 Msa0026760:CDS 50.0%
CATCCCATCCTTCATGGTGA+GGG + chr1_1:50798728-50798747 Msa0026760:CDS 50.0%
CAACCCTCACCATGAAGGAT+GGG - chr1_1:50798734-50798753 None:intergenic 50.0%
TCAACCCTCACCATGAAGGA+TGG - chr1_1:50798735-50798754 None:intergenic 50.0%
! CTCACAAGTCCTTTTGGTGG+TGG + chr1_1:50798780-50798799 Msa0026760:CDS 50.0%
CCTTCTTGGCTGCAGACTTA+AGG - chr1_1:50798833-50798852 None:intergenic 50.0%
CCTTAAGTCTGCAGCCAAGA+AGG + chr1_1:50798830-50798849 Msa0026760:CDS 50.0%
ATCACCACCAGAAGCCTTCT+TGG - chr1_1:50798847-50798866 None:intergenic 50.0%
! AAGAAGGCTTCTGGTGGTGA+TGG + chr1_1:50798846-50798865 Msa0026760:CDS 50.0%
!! TTCTGGTGGTGATGGTGATG+AGG + chr1_1:50798854-50798873 Msa0026760:CDS 50.0%
! TGGTCGGAGAGTACGGTCTT+CGG + chr1_1:50797146-50797165 Msa0026760:CDS 55.0%
! AGTACGGTCTTCGGTGCAAG+AGG + chr1_1:50797155-50797174 Msa0026760:CDS 55.0%
! GTACGGTCTTCGGTGCAAGA+GGG + chr1_1:50797156-50797175 Msa0026760:CDS 55.0%
! TTCGGTGCAAGAGGGAGCTT+TGG + chr1_1:50797164-50797183 Msa0026760:CDS 55.0%
!! GTGCAAGAGGGAGCTTTGGA+GGG + chr1_1:50797168-50797187 Msa0026760:CDS 55.0%
TCATAGGGTTGGAAGGCAGG+TGG + chr1_1:50798701-50798720 Msa0026760:intron 55.0%
CCAGGAAGACCACCACCAAA+AGG - chr1_1:50798792-50798811 None:intergenic 55.0%
!!! CCTTTTGGTGGTGGTCTTCC+TGG + chr1_1:50798789-50798808 Msa0026760:CDS 55.0%
TTCTTTCGCTTGACGCGACC+AGG - chr1_1:50798810-50798829 None:intergenic 55.0%
TCTGCAGCCAAGAAGGCTTC+TGG + chr1_1:50798837-50798856 Msa0026760:CDS 55.0%
!! TGGTGGTGATGGTGATGAGG+AGG + chr1_1:50798857-50798876 Msa0026760:CDS 55.0%
CTACCTGTATTCCGGCGGCT+AGG + chr1_1:50796656-50796675 Msa0026760:five_prime_UTR 60.0%
TCTCCTAGCCGCCGGAATAC+AGG - chr1_1:50796662-50796681 None:intergenic 60.0%
GCCGCGTCGTCCTTATGAGA+AGG + chr1_1:50797099-50797118 Msa0026760:CDS 60.0%
! GGTGCAAGAGGGAGCTTTGG+AGG + chr1_1:50797167-50797186 Msa0026760:CDS 60.0%
GCAGCCAAGAAGGCTTCTGG+TGG + chr1_1:50798840-50798859 Msa0026760:CDS 60.0%
TCCGGCGGCTAGGAGAGAAG+CGG + chr1_1:50796666-50796685 Msa0026760:five_prime_UTR 65.0%
ACCGCTTCTCTCCTAGCCGC+CGG - chr1_1:50796670-50796689 None:intergenic 65.0%
GGAGAGAAGCGGTGGCGTGA+TGG + chr1_1:50796677-50796696 Msa0026760:exon 65.0%
GGCGGCTAGGAGAGAAGCGG+TGG + chr1_1:50796669-50796688 Msa0026760:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50796574 50799374 50796574 ID=Msa0026760;Name=Msa0026760
chr1_1 mRNA 50796574 50799374 50796574 ID=Msa0026760-mRNA-1;Parent=Msa0026760;Name=Msa0026760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|0.5|0.66|3|484|197
chr1_1 exon 50796574 50796723 50796574 ID=Msa0026760-mRNA-1:exon:14743;Parent=Msa0026760-mRNA-1
chr1_1 exon 50797080 50797461 50797080 ID=Msa0026760-mRNA-1:exon:14744;Parent=Msa0026760-mRNA-1
chr1_1 exon 50798707 50799374 50798707 ID=Msa0026760-mRNA-1:exon:14745;Parent=Msa0026760-mRNA-1
chr1_1 five_prime_UTR 50796574 50796695 50796574 ID=Msa0026760-mRNA-1:five_prime_utr;Parent=Msa0026760-mRNA-1
chr1_1 CDS 50796696 50796723 50796696 ID=Msa0026760-mRNA-1:cds;Parent=Msa0026760-mRNA-1
chr1_1 CDS 50797080 50797461 50797080 ID=Msa0026760-mRNA-1:cds;Parent=Msa0026760-mRNA-1
chr1_1 CDS 50798707 50798890 50798707 ID=Msa0026760-mRNA-1:cds;Parent=Msa0026760-mRNA-1
chr1_1 three_prime_UTR 50798891 50799374 50798891 ID=Msa0026760-mRNA-1:three_prime_utr;Parent=Msa0026760-mRNA-1
Gene Sequence

>Msa0026760

ATGGTTAAAGTTGCTTTCTACCGGAACTATGGGAAAACATTCAAGAAGCCGCGTCGTCCTTATGAGAAGGAACGTTTGGATGCTGAGTTGAAGCTGGTCGGAGAGTACGGTCTTCGGTGCAAGAGGGAGCTTTGGAGGGTTCAGTATGCTCTGAGCCGTATCCGTAACAATGCAAGGAATCTGTTGACCTTGGATGAGAAGAACCCTCGTCGTATCTTTGAGGGTGAAGCGCTATTGAGAAGGATGTTTAAGCATGGTCTTCTTGATGAAACTCAGAACAAACTTGATTATGTCTTGGCTCTCACTGTTGAGAATTTTCTTGAACGCCGCCTTCAGACACTTGTATTCAAATCTGGTATGGCCAAGTCCATTCATCATGCTAGGGTTCTTATCAGGCAGAGACACATCAGGGTTGGAAGGCAGGTGGTGAACATCCCATCCTTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCTTTTGGTGGTGGTCTTCCTGGTCGCGTCAAGCGAAAGAACCTTAAGTCTGCAGCCAAGAAGGCTTCTGGTGGTGATGGTGATGAGGAGGATGAAGATTAA
Protein sequence

>Msa0026760

MVKVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKSAAKKASGGDGDEEDED*