Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166970 | XP_013468346.1 | 98.655 | 223 | 3 | 0 | 12 | 234 | 2 | 224 | 1.79e-160 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166970 | sp|Q9FLF0|RS92_ARATH | 90.374 | 187 | 18 | 0 | 38 | 224 | 1 | 187 | 2.20e-122 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166970 | G7ZZL1 | 98.655 | 223 | 3 | 0 | 12 | 234 | 2 | 224 | 8.57e-161 | 453 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026760 | Msa0166970 | 0.872974 | 2.105413e-67 | -8.615850e-47 |
| Msa0077320 | Msa0166970 | 0.826323 | 2.888748e-54 | -8.615850e-47 |
| Msa0091750 | Msa0166970 | 0.821964 | 3.050592e-53 | -8.615850e-47 |
| Msa0114570 | Msa0166970 | 0.830282 | 3.206417e-55 | -8.615850e-47 |
| Msa0166970 | Msa0172930 | 0.806691 | 7.274293e-50 | -8.615850e-47 |
| Msa0166970 | Msa0175000 | 0.810371 | 1.191609e-50 | -8.615850e-47 |
| Msa0166970 | Msa0758420 | 0.829703 | 4.438955e-55 | -8.615850e-47 |
| Msa0166970 | Msa0838070 | 0.817425 | 3.319301e-52 | -8.615850e-47 |
| Msa0166970 | Msa0929790 | 0.814076 | 1.851660e-51 | -8.615850e-47 |
| Msa0166970 | Msa1206240 | 0.832287 | 1.030330e-55 | -8.615850e-47 |
| Msa0166970 | Msa1258540 | 0.802308 | 5.966643e-49 | -8.615850e-47 |
| Msa0166970 | Msa1393000 | 0.811988 | 5.314306e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166970 | MtrunA17_Chr1g0182531 | 98.655 | 223 | 3 | 0 | 12 | 234 | 2 | 224 | 1.65e-164 | 453 |
| Msa0166970 | MtrunA17_Chr3g0077371 | 98.477 | 197 | 3 | 0 | 38 | 234 | 1 | 197 | 1.83e-143 | 399 |
| Msa0166970 | MtrunA17_Chr3g0077391 | 98.477 | 197 | 3 | 0 | 38 | 234 | 1 | 197 | 1.83e-143 | 399 |
| Msa0166970 | MtrunA17_Chr4g0009481 | 98.477 | 197 | 3 | 0 | 38 | 234 | 1 | 197 | 1.83e-143 | 399 |
| Msa0166970 | MtrunA17_Chr7g0241891 | 97.462 | 197 | 5 | 0 | 38 | 234 | 1 | 197 | 1.09e-141 | 394 |
| Msa0166970 | MtrunA17_Chr4g0060551 | 96.522 | 115 | 4 | 0 | 38 | 152 | 1 | 115 | 2.10e-76 | 226 |
| Msa0166970 | MtrunA17_Chr4g0009501 | 98.333 | 60 | 1 | 0 | 175 | 234 | 13 | 72 | 4.66e-37 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166970 | AT5G39850.1 | 90.374 | 187 | 18 | 0 | 38 | 224 | 1 | 187 | 2.24e-123 | 348 |
| Msa0166970 | AT5G15200.1 | 84.343 | 198 | 30 | 1 | 38 | 234 | 1 | 198 | 6.67e-117 | 332 |
| Msa0166970 | AT5G15200.2 | 88.321 | 137 | 16 | 0 | 38 | 174 | 1 | 137 | 1.25e-84 | 249 |
Find 86 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCACCAGAAGCCTTCT+TGG | 0.265320 | 1_4:-48601628 | None:intergenic |
| TACAAACACCATTAAGTAAA+AGG | 0.285041 | 1_4:-48601898 | None:intergenic |
| AACTTGTATGAACAATAAAA+AGG | 0.306005 | 1_4:-48602064 | None:intergenic |
| CAGACACTTGTATTCAAATC+TGG | 0.328033 | 1_4:+48600182 | Msa0166970:CDS |
| AATAAACAAGGATAGGAAAA+TGG | 0.330874 | 1_4:-48601763 | None:intergenic |
| GTTTCATAGGGTTGGAAGGC+AGG | 0.358634 | 1_4:+48601482 | Msa0166970:intron |
| CCTTCTTGGCTGCAGACTTA+AGG | 0.361217 | 1_4:-48601614 | None:intergenic |
| ATCATGCTAGGGTTCTTATC+AGG | 0.370005 | 1_4:+48600222 | Msa0166970:CDS |
| TCGAAAATCTACCTGTGTTC+CGG | 0.383091 | 1_4:+48599707 | Msa0166970:CDS |
| CGATTCAACCATGCTTCATA+TGG | 0.384231 | 1_4:+48601991 | Msa0166970:three_prime_UTR |
| CAGAATTACAAGTTCTCAAA+AGG | 0.386658 | 1_4:-48602025 | None:intergenic |
| TCCTTATGAGAAGGAACGTT+TGG | 0.386694 | 1_4:+48599905 | Msa0166970:CDS |
| TTCGGTGCAAGAGGGAGCTT+TGG | 0.394293 | 1_4:+48599961 | Msa0166970:CDS |
| GCATGGTTGAATCGAAGTTT+TGG | 0.398137 | 1_4:-48601982 | None:intergenic |
| TCTGCAGCCAAGAAGGCTTC+TGG | 0.408125 | 1_4:+48601621 | Msa0166970:CDS |
| TCAAAGATCATCAAATGTAT+TGG | 0.422358 | 1_4:-48601865 | None:intergenic |
| ACAGATTCCTTGCATTGTTA+CGG | 0.425233 | 1_4:-48600010 | None:intergenic |
| TTTAAGCAAAACTCTATACT+TGG | 0.430368 | 1_4:-48601835 | None:intergenic |
| GGTGAACATCCCATCCTTCA+TGG | 0.437604 | 1_4:+48601506 | Msa0166970:CDS |
| CAAAAGCCCAAAACAAGAAA+AGG | 0.439712 | 1_4:+48599631 | Msa0166970:CDS |
| TCCTTGCATTGTTACGGATA+CGG | 0.449433 | 1_4:-48600004 | None:intergenic |
| TTCTTTCGCTTGACGCGACC+AGG | 0.452567 | 1_4:-48601591 | None:intergenic |
| GGTGCAAGAGGGAGCTTTGG+AGG | 0.455063 | 1_4:+48599964 | Msa0166970:CDS |
| CAAAACAAGAAAAGGCCAAT+GGG | 0.457636 | 1_4:+48599639 | Msa0166970:CDS |
| AAGATAGATACTCACAGTTC+CGG | 0.468521 | 1_4:-48599757 | None:intergenic |
| AGTCTAGGACAGAGAACAAA+AGG | 0.472560 | 1_4:-48601710 | None:intergenic |
| TTGAAGCTGGTCGGAGAGTA+CGG | 0.474460 | 1_4:+48599936 | Msa0166970:CDS |
| TGGTTAAAGTTGCTTTCTAC+CGG | 0.476762 | 1_4:+48599738 | Msa0166970:CDS |
| GAACCCTCGTCGTATCTTTG+AGG | 0.479838 | 1_4:+48600049 | Msa0166970:CDS |
| CCTGTGTTCCGGCGGCGTGA+TGG | 0.482481 | 1_4:+48599718 | Msa0166970:CDS |
| TCCAAACGTTCCTTCTCATA+AGG | 0.485854 | 1_4:-48599906 | None:intergenic |
| GAACAAACTTGATTATGTCT+TGG | 0.487846 | 1_4:+48600124 | Msa0166970:CDS |
| CCTAGCATGATGAATGGACT+TGG | 0.491509 | 1_4:-48600210 | None:intergenic |
| TGGTCGGAGAGTACGGTCTT+CGG | 0.495090 | 1_4:+48599943 | Msa0166970:CDS |
| CCTTAAGTCTGCAGCCAAGA+AGG | 0.512247 | 1_4:+48601614 | Msa0166970:CDS |
| TGGGGTTTATAATAGAAAAC+CGG | 0.516679 | 1_4:+48599658 | Msa0166970:CDS |
| AACCCTCGTCGTATCTTTGA+GGG | 0.518161 | 1_4:+48600050 | Msa0166970:CDS |
| TTCTGGTGGTGATGGTGATG+AGG | 0.523720 | 1_4:+48601638 | Msa0166970:CDS |
| AAGAACCCTAGCATGATGAA+TGG | 0.528751 | 1_4:-48600216 | None:intergenic |
| TCAACCCTCACCATGAAGGA+TGG | 0.531047 | 1_4:-48601516 | None:intergenic |
| CCAGGAAGACCACCACCAAA+AGG | 0.535069 | 1_4:-48601573 | None:intergenic |
| AACTTTAACCATCACGCCGC+CGG | 0.540055 | 1_4:-48599726 | None:intergenic |
| CCAAGTCCATTCATCATGCT+AGG | 0.540233 | 1_4:+48600210 | Msa0166970:CDS |
| ACTTGTATTCAAATCTGGTA+TGG | 0.540887 | 1_4:+48600187 | Msa0166970:CDS |
| GATGCTAATTGTTTCACCAC+CGG | 0.541799 | 1_4:-48599677 | None:intergenic |
| TTCGTGTTTAAAATGTCAAG+TGG | 0.546798 | 1_4:-48602117 | None:intergenic |
| CTCGCATAATAAACAAGGAT+AGG | 0.549068 | 1_4:-48601770 | None:intergenic |
| TTTGGTTTCATAGGGTTGGA+AGG | 0.553079 | 1_4:+48601478 | Msa0166970:intron |
| TACAAGTTCTCAAAAGGCAC+AGG | 0.553498 | 1_4:-48602019 | None:intergenic |
| GTGCAAGAGGGAGCTTTGGA+GGG | 0.553805 | 1_4:+48599965 | Msa0166970:CDS |
| TGATAGAAAATCTAAAGTCT+AGG | 0.553926 | 1_4:-48601725 | None:intergenic |
| CTATCCTTGTTTATTATGCG+AGG | 0.560772 | 1_4:+48601771 | Msa0166970:three_prime_UTR |
| CCATCACGCCGCCGGAACAC+AGG | 0.562971 | 1_4:-48599718 | None:intergenic |
| CCAAAACAAGAAAAGGCCAA+TGG | 0.567658 | 1_4:+48599638 | Msa0166970:CDS |
| CAACCCTCACCATGAAGGAT+GGG | 0.569875 | 1_4:-48601515 | None:intergenic |
| TGAATCAACCCTCACCATGA+AGG | 0.571223 | 1_4:-48601520 | None:intergenic |
| TGCAAGGAATCTGTTGACCT+TGG | 0.574046 | 1_4:+48600019 | Msa0166970:CDS |
| TTATCAGGCAGAGACACATC+AGG | 0.576233 | 1_4:+48600237 | Msa0166970:CDS |
| AGGGTGAAGCGCTATTGAGA+AGG | 0.577811 | 1_4:+48600069 | Msa0166970:CDS |
| TTTGGATGCTGAGTTGAAGC+TGG | 0.580359 | 1_4:+48599923 | Msa0166970:CDS |
| AAGAAGGCTTCTGGTGGTGA+TGG | 0.583588 | 1_4:+48601630 | Msa0166970:CDS |
| AGTACGGTCTTCGGTGCAAG+AGG | 0.589539 | 1_4:+48599952 | Msa0166970:CDS |
| CAAGTCCATTCATCATGCTA+GGG | 0.590386 | 1_4:+48600211 | Msa0166970:CDS |
| CATCCCATCCTTCATGGTGA+GGG | 0.593258 | 1_4:+48601512 | Msa0166970:CDS |
| GCCGTATCCGTAACAATGCA+AGG | 0.595109 | 1_4:+48600003 | Msa0166970:CDS |
| GCCGCGTCGTCCTTATGAGA+AGG | 0.598413 | 1_4:+48599896 | Msa0166970:CDS |
| TCATAGGGTTGGAAGGCAGG+TGG | 0.599698 | 1_4:+48601485 | Msa0166970:intron |
| ACGAATGAAGCAATTAGTCA+TGG | 0.606416 | 1_4:+48602135 | Msa0166970:three_prime_UTR |
| ACATCCCATCCTTCATGGTG+AGG | 0.616704 | 1_4:+48601511 | Msa0166970:CDS |
| ACGAGGGTTCTTCTCATCCA+AGG | 0.618972 | 1_4:-48600036 | None:intergenic |
| TGGTGGTGATGGTGATGAGG+AGG | 0.622606 | 1_4:+48601641 | Msa0166970:CDS |
| TTGAGAAGGATGTTTAAGCA+TGG | 0.626035 | 1_4:+48600083 | Msa0166970:CDS |
| AAAATCTACCTGTGTTCCGG+CGG | 0.626600 | 1_4:+48599710 | Msa0166970:CDS |
| GAGAACAAAAGGCTAGAGCA+AGG | 0.632584 | 1_4:-48601699 | None:intergenic |
| ATTTCCTCGCATAATAAACA+AGG | 0.635314 | 1_4:-48601775 | None:intergenic |
| GCAGCCAAGAAGGCTTCTGG+TGG | 0.636584 | 1_4:+48601624 | Msa0166970:CDS |
| GATGCTGAGTTGAAGCTGGT+CGG | 0.640820 | 1_4:+48599927 | Msa0166970:CDS |
| ATTTGAATACAAGTGTCTGA+AGG | 0.654254 | 1_4:-48600178 | None:intergenic |
| AGGCTACACCATATGAAGCA+TGG | 0.656502 | 1_4:-48601999 | None:intergenic |
| TGAATACAAGTGTCTGAAGG+CGG | 0.659618 | 1_4:-48600175 | None:intergenic |
| AAAACAAGAAAAGGCCAATG+GGG | 0.679374 | 1_4:+48599640 | Msa0166970:CDS |
| GTACGGTCTTCGGTGCAAGA+GGG | 0.685910 | 1_4:+48599953 | Msa0166970:CDS |
| GGTTTATAATAGAAAACCGG+TGG | 0.690776 | 1_4:+48599661 | Msa0166970:CDS |
| TCACCCTCAAAGATACGACG+AGG | 0.726164 | 1_4:-48600053 | None:intergenic |
| CACCCTCAAAGATACGACGA+GGG | 0.739733 | 1_4:-48600052 | None:intergenic |
| TCCTTCTCATAAGGACGACG+CGG | 0.741698 | 1_4:-48599897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATGATAATAATGAAA+TGG | - | chr1_4:48599783-48599802 | None:intergenic | 10.0% |
| !! | AAATATGAAAAATATAAACA+AGG | - | chr1_4:48601373-48601392 | None:intergenic | 10.0% |
| !! | AATAAATAAATAAACATTAG+GGG | - | chr1_4:48601411-48601430 | None:intergenic | 10.0% |
| !!! | ATGTATGATAATATTATTTT+TGG | + | chr1_4:48601460-48601479 | Msa0166970:intron | 10.0% |
| !!! | TGAATTTTTCTGATTTTTTA+TGG | + | chr1_4:48600303-48600322 | Msa0166970:intron | 15.0% |
| !! | ATATAATTTAGTGTAATCAT+AGG | - | chr1_4:48600799-48600818 | None:intergenic | 15.0% |
| !!! | ATCATTTTCTCAAATATTAT+CGG | + | chr1_4:48600817-48600836 | Msa0166970:intron | 15.0% |
| !!! | AATATTATTTTTGGTTTCAT+AGG | + | chr1_4:48601469-48601488 | Msa0166970:intron | 15.0% |
| !!! | ATATTATTTTTGGTTTCATA+GGG | + | chr1_4:48601470-48601489 | Msa0166970:intron | 15.0% |
| !!! | ACAATTGTTTGTTGAATTTA+TGG | + | chr1_4:48599821-48599840 | Msa0166970:intron | 20.0% |
| !!! | TTCTCATTTGCTATAAAAAA+TGG | - | chr1_4:48600356-48600375 | None:intergenic | 20.0% |
| !!! | TGTTTTTTCAAAATAATGCA+GGG | - | chr1_4:48600541-48600560 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTCAAAATAATGC+AGG | - | chr1_4:48600542-48600561 | None:intergenic | 20.0% |
| !! | CAAAACATGTATAGAATTAA+AGG | - | chr1_4:48601002-48601021 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTTACTCTGAA+TGG | + | chr1_4:48601345-48601364 | Msa0166970:intron | 20.0% |
| !!! | TTCATATTTTGTATGCTTAT+TGG | + | chr1_4:48601384-48601403 | Msa0166970:intron | 20.0% |
| !!! | TAATTGAACCTTTTACTTAA+TGG | + | chr1_4:48601890-48601909 | Msa0166970:three_prime_UTR | 20.0% |
| !!! | TTTGATTTTGCATATTTTGA+TGG | + | chr1_4:48601936-48601955 | Msa0166970:three_prime_UTR | 20.0% |
| !!! | TTGATTTTGCATATTTTGAT+GGG | + | chr1_4:48601937-48601956 | Msa0166970:three_prime_UTR | 20.0% |
| !! | AACTTGTATGAACAATAAAA+AGG | - | chr1_4:48602067-48602086 | None:intergenic | 20.0% |
| !! | TTTTCTATTATAAACCCCAT+TGG | - | chr1_4:48599657-48599676 | None:intergenic | 25.0% |
| !!! | AACTTGCATTTTTTTTCTAG+CGG | + | chr1_4:48601109-48601128 | Msa0166970:intron | 25.0% |
| !! | TAGTCTTAACGAAATATGTT+TGG | + | chr1_4:48601435-48601454 | Msa0166970:intron | 25.0% |
| ! | AGTCTTAACGAAATATGTTT+GGG | + | chr1_4:48601436-48601455 | Msa0166970:intron | 25.0% |
| !! | TGATAGAAAATCTAAAGTCT+AGG | - | chr1_4:48601728-48601747 | None:intergenic | 25.0% |
| ! | AATAAACAAGGATAGGAAAA+TGG | - | chr1_4:48601766-48601785 | None:intergenic | 25.0% |
| ! | TTTAAGCAAAACTCTATACT+TGG | - | chr1_4:48601838-48601857 | None:intergenic | 25.0% |
| ! | TCAAAGATCATCAAATGTAT+TGG | - | chr1_4:48601868-48601887 | None:intergenic | 25.0% |
| ! | TACAAACACCATTAAGTAAA+AGG | - | chr1_4:48601901-48601920 | None:intergenic | 25.0% |
| !!! | TGATTTTGCATATTTTGATG+GGG | + | chr1_4:48601938-48601957 | Msa0166970:three_prime_UTR | 25.0% |
| TGGGGTTTATAATAGAAAAC+CGG | + | chr1_4:48599658-48599677 | Msa0166970:CDS | 30.0% | |
| ATTGAATACACATACACAGA+TGG | + | chr1_4:48599858-48599877 | Msa0166970:intron | 30.0% | |
| TTGAATACACATACACAGAT+GGG | + | chr1_4:48599859-48599878 | Msa0166970:intron | 30.0% | |
| GAACAAACTTGATTATGTCT+TGG | + | chr1_4:48600124-48600143 | Msa0166970:CDS | 30.0% | |
| ATTTGAATACAAGTGTCTGA+AGG | - | chr1_4:48600181-48600200 | None:intergenic | 30.0% | |
| ACTTGTATTCAAATCTGGTA+TGG | + | chr1_4:48600187-48600206 | Msa0166970:CDS | 30.0% | |
| !! | GCTTATTTGAGTTTGTCTTT+TGG | - | chr1_4:48600505-48600524 | None:intergenic | 30.0% |
| GTAGATCATGTTTAGATCAT+TGG | + | chr1_4:48600640-48600659 | Msa0166970:intron | 30.0% | |
| !! | GATTATGTTTTTCTTGGTGT+CGG | + | chr1_4:48600751-48600770 | Msa0166970:intron | 30.0% |
| TTCTCAAATATTATCGGTCT+CGG | + | chr1_4:48600823-48600842 | Msa0166970:intron | 30.0% | |
| TGTTTGTATTCACCAAGAAT+TGG | + | chr1_4:48600916-48600935 | Msa0166970:intron | 30.0% | |
| !!! | TTCCTGTTTTTTCCAATTCT+TGG | - | chr1_4:48600931-48600950 | None:intergenic | 30.0% |
| ! | ACAGGAAAGTATATGTGAAA+TGG | + | chr1_4:48600944-48600963 | Msa0166970:intron | 30.0% |
| ATATGTGAAATGGAGTATAC+AGG | + | chr1_4:48600954-48600973 | Msa0166970:intron | 30.0% | |
| CAATATGTTCTATGTATCGA+AGG | + | chr1_4:48601151-48601170 | Msa0166970:intron | 30.0% | |
| AACAGACAAGATCATATTAC+AGG | - | chr1_4:48601215-48601234 | None:intergenic | 30.0% | |
| !!! | TACTCAAATGTCACTGATTT+TGG | + | chr1_4:48601244-48601263 | Msa0166970:intron | 30.0% |
| !!! | TATTTTTGGTTTCATAGGGT+TGG | + | chr1_4:48601474-48601493 | Msa0166970:intron | 30.0% |
| ATTTCCTCGCATAATAAACA+AGG | - | chr1_4:48601778-48601797 | None:intergenic | 30.0% | |
| CAGAATTACAAGTTCTCAAA+AGG | - | chr1_4:48602028-48602047 | None:intergenic | 30.0% | |
| ! | TTCGTGTTTAAAATGTCAAG+TGG | - | chr1_4:48602120-48602139 | None:intergenic | 30.0% |
| CAAAAGCCCAAAACAAGAAA+AGG | + | chr1_4:48599631-48599650 | Msa0166970:CDS | 35.0% | |
| !!! | CATTGGCCTTTTCTTGTTTT+GGG | - | chr1_4:48599640-48599659 | None:intergenic | 35.0% |
| CAAAACAAGAAAAGGCCAAT+GGG | + | chr1_4:48599639-48599658 | Msa0166970:CDS | 35.0% | |
| AAAACAAGAAAAGGCCAATG+GGG | + | chr1_4:48599640-48599659 | Msa0166970:CDS | 35.0% | |
| GGTTTATAATAGAAAACCGG+TGG | + | chr1_4:48599661-48599680 | Msa0166970:CDS | 35.0% | |
| ! | TGGTTAAAGTTGCTTTCTAC+CGG | + | chr1_4:48599738-48599757 | Msa0166970:CDS | 35.0% |
| AAGATAGATACTCACAGTTC+CGG | - | chr1_4:48599760-48599779 | None:intergenic | 35.0% | |
| ACAGATTCCTTGCATTGTTA+CGG | - | chr1_4:48600013-48600032 | None:intergenic | 35.0% | |
| TTGAGAAGGATGTTTAAGCA+TGG | + | chr1_4:48600083-48600102 | Msa0166970:CDS | 35.0% | |
| CAGACACTTGTATTCAAATC+TGG | + | chr1_4:48600182-48600201 | Msa0166970:CDS | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr1_4:48600515-48600534 | Msa0166970:intron | 35.0% | |
| TGGTTGTCTCTAACAATGTT+TGG | + | chr1_4:48600660-48600679 | Msa0166970:intron | 35.0% | |
| !! | GTTTGGTTTGCATTGTTGTA+TGG | + | chr1_4:48600677-48600696 | Msa0166970:intron | 35.0% |
| ! | CTCCTGGATTATGTTTTTCT+TGG | + | chr1_4:48600745-48600764 | Msa0166970:intron | 35.0% |
| CACCAAGAAAAACATAATCC+AGG | - | chr1_4:48600750-48600769 | None:intergenic | 35.0% | |
| CACCAAGAATTGGAAAAAAC+AGG | + | chr1_4:48600926-48600945 | Msa0166970:intron | 35.0% | |
| !! | TTCAAGTTGCCAGCAAAAAT+GGG | - | chr1_4:48601038-48601057 | None:intergenic | 35.0% |
| !!! | TTTTTTTCTAGCGGCTGTTA+TGG | + | chr1_4:48601118-48601137 | Msa0166970:intron | 35.0% |
| TTCTATGTATCGAAGGTAGT+AGG | + | chr1_4:48601158-48601177 | Msa0166970:intron | 35.0% | |
| ! | TCCATTGTTCAAGTAATGGA+GGG | + | chr1_4:48601187-48601206 | Msa0166970:intron | 35.0% |
| ! | TTTTCACTCACAAGTCCTTT+TGG | + | chr1_4:48601558-48601577 | Msa0166970:CDS | 35.0% |
| CTCGCATAATAAACAAGGAT+AGG | - | chr1_4:48601773-48601792 | None:intergenic | 35.0% | |
| ! | CTATCCTTGTTTATTATGCG+AGG | + | chr1_4:48601771-48601790 | Msa0166970:three_prime_UTR | 35.0% |
| ACGAATGAAGCAATTAGTCA+TGG | + | chr1_4:48602135-48602154 | Msa0166970:three_prime_UTR | 35.0% | |
| !!! | CCATTGGCCTTTTCTTGTTT+TGG | - | chr1_4:48599641-48599660 | None:intergenic | 40.0% |
| CCAAAACAAGAAAAGGCCAA+TGG | + | chr1_4:48599638-48599657 | Msa0166970:CDS | 40.0% | |
| GATGCTAATTGTTTCACCAC+CGG | - | chr1_4:48599680-48599699 | None:intergenic | 40.0% | |
| ! | CACAGGTAGATTTTCGAAGA+AGG | - | chr1_4:48599704-48599723 | None:intergenic | 40.0% |
| TCGAAAATCTACCTGTGTTC+CGG | + | chr1_4:48599707-48599726 | Msa0166970:CDS | 40.0% | |
| TCCTTATGAGAAGGAACGTT+TGG | + | chr1_4:48599905-48599924 | Msa0166970:CDS | 40.0% | |
| TCCAAACGTTCCTTCTCATA+AGG | - | chr1_4:48599909-48599928 | None:intergenic | 40.0% | |
| TCCTTGCATTGTTACGGATA+CGG | - | chr1_4:48600007-48600026 | None:intergenic | 40.0% | |
| TGAATACAAGTGTCTGAAGG+CGG | - | chr1_4:48600178-48600197 | None:intergenic | 40.0% | |
| CAAGTCCATTCATCATGCTA+GGG | + | chr1_4:48600211-48600230 | Msa0166970:CDS | 40.0% | |
| AAGAACCCTAGCATGATGAA+TGG | - | chr1_4:48600219-48600238 | None:intergenic | 40.0% | |
| ATCATGCTAGGGTTCTTATC+AGG | + | chr1_4:48600222-48600241 | Msa0166970:CDS | 40.0% | |
| AAAATAATGCAGGGCCTGTT+TGG | - | chr1_4:48600532-48600551 | None:intergenic | 40.0% | |
| ! | TACTCGCTTTCTGTGTTTTG+TGG | + | chr1_4:48600702-48600721 | Msa0166970:intron | 40.0% |
| ! | ACTCGCTTTCTGTGTTTTGT+GGG | + | chr1_4:48600703-48600722 | Msa0166970:intron | 40.0% |
| !! | TGTCCATGTTTTTGCGTCAT+AGG | + | chr1_4:48600853-48600872 | Msa0166970:intron | 40.0% |
| ! | TCAAGTTGCCAGCAAAAATG+GGG | - | chr1_4:48601037-48601056 | None:intergenic | 40.0% |
| !! | GTTCAAGTTGCCAGCAAAAA+TGG | - | chr1_4:48601039-48601058 | None:intergenic | 40.0% |
| CCATTACTTGAACAATGGAG+AGG | - | chr1_4:48601186-48601205 | None:intergenic | 40.0% | |
| CCTCTCCATTGTTCAAGTAA+TGG | + | chr1_4:48601183-48601202 | Msa0166970:intron | 40.0% | |
| CTCCATTGTTCAAGTAATGG+AGG | + | chr1_4:48601186-48601205 | Msa0166970:intron | 40.0% | |
| GTGAATGAAGAGAAGAGAGA+TGG | + | chr1_4:48601311-48601330 | Msa0166970:intron | 40.0% | |
| ! | TTTGGTTTCATAGGGTTGGA+AGG | + | chr1_4:48601478-48601497 | Msa0166970:intron | 40.0% |
| ! | AGTCTAGGACAGAGAACAAA+AGG | - | chr1_4:48601713-48601732 | None:intergenic | 40.0% |
| !! | TTTTGGTTGGTTGGATACAC+AGG | - | chr1_4:48601968-48601987 | None:intergenic | 40.0% |
| !!! | GAATCGAAGTTTTGGTTGGT+TGG | - | chr1_4:48601977-48601996 | None:intergenic | 40.0% |
| !! | GGTTGAATCGAAGTTTTGGT+TGG | - | chr1_4:48601981-48602000 | None:intergenic | 40.0% |
| ! | GCATGGTTGAATCGAAGTTT+TGG | - | chr1_4:48601985-48602004 | None:intergenic | 40.0% |
| CGATTCAACCATGCTTCATA+TGG | + | chr1_4:48601991-48602010 | Msa0166970:three_prime_UTR | 40.0% | |
| ! | TACAAGTTCTCAAAAGGCAC+AGG | - | chr1_4:48602022-48602041 | None:intergenic | 40.0% |
| AAAATCTACCTGTGTTCCGG+CGG | + | chr1_4:48599710-48599729 | Msa0166970:CDS | 45.0% | |
| ! | TTTGGATGCTGAGTTGAAGC+TGG | + | chr1_4:48599923-48599942 | Msa0166970:CDS | 45.0% |
| TGCAAGGAATCTGTTGACCT+TGG | + | chr1_4:48600019-48600038 | Msa0166970:CDS | 45.0% | |
| AACCCTCGTCGTATCTTTGA+GGG | + | chr1_4:48600050-48600069 | Msa0166970:CDS | 45.0% | |
| ! | CCTAGCATGATGAATGGACT+TGG | - | chr1_4:48600213-48600232 | None:intergenic | 45.0% |
| CCAAGTCCATTCATCATGCT+AGG | + | chr1_4:48600210-48600229 | Msa0166970:CDS | 45.0% | |
| TTATCAGGCAGAGACACATC+AGG | + | chr1_4:48600237-48600256 | Msa0166970:CDS | 45.0% | |
| GCACCTATGACGCAAAAACA+TGG | - | chr1_4:48600859-48600878 | None:intergenic | 45.0% | |
| !!! | GACTAAAGCTGCTGCTTTTC+TGG | + | chr1_4:48601063-48601082 | Msa0166970:intron | 45.0% |
| !!! | CTGCTTTTCTGGCTTTTCTC+TGG | + | chr1_4:48601074-48601093 | Msa0166970:intron | 45.0% |
| GCCCTCCATTACTTGAACAA+TGG | - | chr1_4:48601191-48601210 | None:intergenic | 45.0% | |
| TGAATCAACCCTCACCATGA+AGG | - | chr1_4:48601523-48601542 | None:intergenic | 45.0% | |
| ! | TCACTCACAAGTCCTTTTGG+TGG | + | chr1_4:48601561-48601580 | Msa0166970:CDS | 45.0% |
| GAGAACAAAAGGCTAGAGCA+AGG | - | chr1_4:48601702-48601721 | None:intergenic | 45.0% | |
| AGGCTACACCATATGAAGCA+TGG | - | chr1_4:48602002-48602021 | None:intergenic | 45.0% | |
| !! | AAATAAATAAATAAACATTA+GGG | - | chr1_4:48601412-48601431 | None:intergenic | 5.0% |
| !! | TAAATAAATAAATAAACATT+AGG | - | chr1_4:48601413-48601432 | None:intergenic | 5.0% |
| AACTTTAACCATCACGCCGC+CGG | - | chr1_4:48599729-48599748 | None:intergenic | 50.0% | |
| TCCTTCTCATAAGGACGACG+CGG | - | chr1_4:48599900-48599919 | None:intergenic | 50.0% | |
| ! | GATGCTGAGTTGAAGCTGGT+CGG | + | chr1_4:48599927-48599946 | Msa0166970:CDS | 50.0% |
| TTGAAGCTGGTCGGAGAGTA+CGG | + | chr1_4:48599936-48599955 | Msa0166970:CDS | 50.0% | |
| GCCGTATCCGTAACAATGCA+AGG | + | chr1_4:48600003-48600022 | Msa0166970:CDS | 50.0% | |
| ACGAGGGTTCTTCTCATCCA+AGG | - | chr1_4:48600039-48600058 | None:intergenic | 50.0% | |
| GAACCCTCGTCGTATCTTTG+AGG | + | chr1_4:48600049-48600068 | Msa0166970:CDS | 50.0% | |
| CACCCTCAAAGATACGACGA+GGG | - | chr1_4:48600055-48600074 | None:intergenic | 50.0% | |
| TCACCCTCAAAGATACGACG+AGG | - | chr1_4:48600056-48600075 | None:intergenic | 50.0% | |
| ! | AGGGTGAAGCGCTATTGAGA+AGG | + | chr1_4:48600069-48600088 | Msa0166970:CDS | 50.0% |
| AATGCAGGGCCTGTTTGGAT+TGG | - | chr1_4:48600527-48600546 | None:intergenic | 50.0% | |
| CTATGAAGCACGAACACTCC+TGG | + | chr1_4:48600729-48600748 | Msa0166970:intron | 50.0% | |
| !! | TGCTACTGCCCCATTTTTGC+TGG | + | chr1_4:48601026-48601045 | Msa0166970:intron | 50.0% |
| GTTTCATAGGGTTGGAAGGC+AGG | + | chr1_4:48601482-48601501 | Msa0166970:intron | 50.0% | |
| GGTGAACATCCCATCCTTCA+TGG | + | chr1_4:48601506-48601525 | Msa0166970:CDS | 50.0% | |
| ACATCCCATCCTTCATGGTG+AGG | + | chr1_4:48601511-48601530 | Msa0166970:CDS | 50.0% | |
| CATCCCATCCTTCATGGTGA+GGG | + | chr1_4:48601512-48601531 | Msa0166970:CDS | 50.0% | |
| CAACCCTCACCATGAAGGAT+GGG | - | chr1_4:48601518-48601537 | None:intergenic | 50.0% | |
| TCAACCCTCACCATGAAGGA+TGG | - | chr1_4:48601519-48601538 | None:intergenic | 50.0% | |
| ! | CTCACAAGTCCTTTTGGTGG+TGG | + | chr1_4:48601564-48601583 | Msa0166970:CDS | 50.0% |
| CCTTCTTGGCTGCAGACTTA+AGG | - | chr1_4:48601617-48601636 | None:intergenic | 50.0% | |
| CCTTAAGTCTGCAGCCAAGA+AGG | + | chr1_4:48601614-48601633 | Msa0166970:CDS | 50.0% | |
| ATCACCACCAGAAGCCTTCT+TGG | - | chr1_4:48601631-48601650 | None:intergenic | 50.0% | |
| ! | AAGAAGGCTTCTGGTGGTGA+TGG | + | chr1_4:48601630-48601649 | Msa0166970:CDS | 50.0% |
| !! | TTCTGGTGGTGATGGTGATG+AGG | + | chr1_4:48601638-48601657 | Msa0166970:CDS | 50.0% |
| ! | TGGTCGGAGAGTACGGTCTT+CGG | + | chr1_4:48599943-48599962 | Msa0166970:CDS | 55.0% |
| ! | AGTACGGTCTTCGGTGCAAG+AGG | + | chr1_4:48599952-48599971 | Msa0166970:CDS | 55.0% |
| ! | GTACGGTCTTCGGTGCAAGA+GGG | + | chr1_4:48599953-48599972 | Msa0166970:CDS | 55.0% |
| ! | TTCGGTGCAAGAGGGAGCTT+TGG | + | chr1_4:48599961-48599980 | Msa0166970:CDS | 55.0% |
| !! | GTGCAAGAGGGAGCTTTGGA+GGG | + | chr1_4:48599965-48599984 | Msa0166970:CDS | 55.0% |
| TCATAGGGTTGGAAGGCAGG+TGG | + | chr1_4:48601485-48601504 | Msa0166970:intron | 55.0% | |
| CCAGGAAGACCACCACCAAA+AGG | - | chr1_4:48601576-48601595 | None:intergenic | 55.0% | |
| !!! | CCTTTTGGTGGTGGTCTTCC+TGG | + | chr1_4:48601573-48601592 | Msa0166970:CDS | 55.0% |
| TTCTTTCGCTTGACGCGACC+AGG | - | chr1_4:48601594-48601613 | None:intergenic | 55.0% | |
| TCTGCAGCCAAGAAGGCTTC+TGG | + | chr1_4:48601621-48601640 | Msa0166970:CDS | 55.0% | |
| !! | TGGTGGTGATGGTGATGAGG+AGG | + | chr1_4:48601641-48601660 | Msa0166970:CDS | 55.0% |
| GCCGCGTCGTCCTTATGAGA+AGG | + | chr1_4:48599896-48599915 | Msa0166970:CDS | 60.0% | |
| ! | GGTGCAAGAGGGAGCTTTGG+AGG | + | chr1_4:48599964-48599983 | Msa0166970:CDS | 60.0% |
| GCAGCCAAGAAGGCTTCTGG+TGG | + | chr1_4:48601624-48601643 | Msa0166970:CDS | 60.0% | |
| CCATCACGCCGCCGGAACAC+AGG | - | chr1_4:48599721-48599740 | None:intergenic | 70.0% | |
| CCTGTGTTCCGGCGGCGTGA+TGG | + | chr1_4:48599718-48599737 | Msa0166970:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 48599626 | 48602158 | 48599626 | ID=Msa0166970;Name=Msa0166970 |
| chr1_4 | mRNA | 48599626 | 48602158 | 48599626 | ID=Msa0166970-mRNA-1;Parent=Msa0166970;Name=Msa0166970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|484|234 |
| chr1_4 | exon | 48599626 | 48599764 | 48599626 | ID=Msa0166970-mRNA-1:exon:14181;Parent=Msa0166970-mRNA-1 |
| chr1_4 | exon | 48599877 | 48600258 | 48599877 | ID=Msa0166970-mRNA-1:exon:14182;Parent=Msa0166970-mRNA-1 |
| chr1_4 | exon | 48601491 | 48602158 | 48601491 | ID=Msa0166970-mRNA-1:exon:14183;Parent=Msa0166970-mRNA-1 |
| chr1_4 | CDS | 48599626 | 48599764 | 48599626 | ID=Msa0166970-mRNA-1:cds;Parent=Msa0166970-mRNA-1 |
| chr1_4 | CDS | 48599877 | 48600258 | 48599877 | ID=Msa0166970-mRNA-1:cds;Parent=Msa0166970-mRNA-1 |
| chr1_4 | CDS | 48601491 | 48601674 | 48601491 | ID=Msa0166970-mRNA-1:cds;Parent=Msa0166970-mRNA-1 |
| chr1_4 | three_prime_UTR | 48601675 | 48602158 | 48601675 | ID=Msa0166970-mRNA-1:three_prime_utr;Parent=Msa0166970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
