AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027490 MtrunA17_Chr1g0183741 98.909 275 3 0 1 275 1 275 0.0 579
Msa0027490 MtrunA17_Chr7g0261411 76.109 293 50 7 1 275 1 291 4.91e-152 426
Msa0027490 MtrunA17_Chr2g0312321 46.914 243 111 5 6 234 7 245 2.00e-67 211
Msa0027490 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 4.17e-61 197
Msa0027490 MtrunA17_Chr3g0139331 43.333 240 110 5 9 234 10 237 1.63e-59 192
Msa0027490 MtrunA17_Chr4g0060931 48.691 191 82 4 10 186 17 205 5.67e-59 191
Msa0027490 MtrunA17_Chr1g0147421 53.797 158 70 2 2 156 19 176 1.38e-58 190
Msa0027490 MtrunA17_Chr4g0018391 45.813 203 91 5 8 194 5 204 1.97e-57 187
Msa0027490 MtrunA17_Chr3g0091921 49.733 187 78 5 10 182 16 200 9.99e-57 184
Msa0027490 MtrunA17_Chr5g0405211 48.205 195 89 5 8 192 6 198 1.93e-56 184
Msa0027490 MtrunA17_Chr6g0484441 56.376 149 61 2 10 156 5 151 2.41e-56 184
Msa0027490 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.24e-56 185
Msa0027490 MtrunA17_Chr7g0253011 54.375 160 65 3 5 156 12 171 1.24e-55 183
Msa0027490 MtrunA17_Chr6g0453451 37.241 290 153 7 4 273 10 290 2.56e-55 181
Msa0027490 MtrunA17_Chr8g0372121 46.774 186 89 5 8 185 4 187 3.21e-55 180
Msa0027490 MtrunA17_Chr2g0318101 40.408 245 124 5 10 233 15 258 1.28e-54 180
Msa0027490 MtrunA17_Chr5g0398971 53.595 153 64 3 10 156 7 158 1.46e-54 180
Msa0027490 MtrunA17_Chr4g0017921 54.902 153 63 3 8 156 6 156 5.50e-54 178
Msa0027490 MtrunA17_Chr4g0056541 52.229 157 68 3 8 159 5 159 1.20e-53 178
Msa0027490 MtrunA17_Chr7g0252971 42.857 203 89 3 10 185 8 210 7.73e-53 175
Msa0027490 MtrunA17_Chr6g0481091 41.860 215 115 4 8 216 4 214 1.51e-52 171
Msa0027490 MtrunA17_Chr7g0217721 39.370 254 107 6 13 221 22 273 3.05e-52 174
Msa0027490 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 3.16e-52 176
Msa0027490 MtrunA17_Chr2g0309891 54.194 155 62 3 9 156 5 157 4.98e-52 173
Msa0027490 MtrunA17_Chr1g0200561 52.229 157 68 4 5 156 14 168 6.55e-52 173
Msa0027490 MtrunA17_Chr4g0047841 45.810 179 70 2 10 161 15 193 2.05e-51 171
Msa0027490 MtrunA17_Chr7g0214071 48.235 170 81 3 10 177 15 179 1.02e-50 167
Msa0027490 MtrunA17_Chr3g0109821 43.868 212 85 5 8 212 4 188 2.63e-50 175
Msa0027490 MtrunA17_Chr2g0309331 43.842 203 100 6 9 206 9 202 5.00e-50 168
Msa0027490 MtrunA17_Chr8g0384721 50.625 160 67 3 10 160 7 163 8.72e-50 166
Msa0027490 MtrunA17_Chr3g0124761 51.899 158 64 3 10 159 7 160 9.15e-50 166
Msa0027490 MtrunA17_Chr5g0417791 47.097 155 72 2 10 156 3 155 1.66e-49 164
Msa0027490 MtrunA17_Chr4g0042561 46.061 165 76 4 6 159 5 167 2.71e-49 164
Msa0027490 MtrunA17_Chr2g0326361 49.045 157 72 2 9 157 13 169 8.14e-49 164
Msa0027490 MtrunA17_Chr5g0433781 54.140 157 60 4 8 156 4 156 1.03e-48 171
Msa0027490 MtrunA17_Chr3g0130731 50.625 160 66 4 10 160 7 162 1.59e-48 162
Msa0027490 MtrunA17_Chr7g0263931 47.742 155 73 1 10 156 11 165 2.66e-47 160
Msa0027490 MtrunA17_Chr8g0346001 44.848 165 73 3 8 156 13 175 8.76e-47 162
Msa0027490 MtrunA17_Chr7g0217711 53.968 126 56 1 13 138 22 145 9.02e-47 154
Msa0027490 MtrunA17_Chr5g0400461 49.398 166 76 4 7 164 3 168 1.15e-46 159
Msa0027490 MtrunA17_Chr2g0318081 49.398 166 70 4 1 156 3 164 1.45e-46 159
Msa0027490 MtrunA17_Chr8g0361731 37.118 229 126 3 12 222 16 244 1.39e-45 157
Msa0027490 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 4.94e-45 154
Msa0027490 MtrunA17_Chr5g0417001 36.697 218 118 4 12 211 16 231 7.11e-44 153
Msa0027490 MtrunA17_Chr4g0054791 39.241 237 116 7 7 234 3 220 3.01e-43 149
Msa0027490 MtrunA17_Chr1g0197351 47.531 162 67 4 9 156 41 198 1.31e-42 151
Msa0027490 MtrunA17_Chr6g0453131 43.125 160 77 3 10 156 15 173 2.80e-42 149
Msa0027490 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 9.32e-41 144
Msa0027490 MtrunA17_Chr3g0092671 49.007 151 69 4 12 156 7 155 1.11e-40 147
Msa0027490 MtrunA17_Chr1g0197361 44.751 181 91 6 12 185 10 188 2.41e-40 147
Msa0027490 MtrunA17_Chr4g0076731 41.176 204 101 5 12 212 56 243 5.25e-40 144
Msa0027490 MtrunA17_Chr5g0428991 49.020 153 70 3 10 156 25 175 1.25e-39 145
Msa0027490 MtrunA17_Chr3g0128151 42.632 190 85 5 9 176 21 208 1.95e-39 144
Msa0027490 MtrunA17_Chr3g0128111 46.667 150 72 3 13 156 45 192 2.18e-39 137
Msa0027490 MtrunA17_Chr2g0311651 37.727 220 114 7 12 208 24 243 4.94e-39 138
Msa0027490 MtrunA17_Chr5g0442771 41.463 164 72 3 12 156 20 178 5.42e-39 138
Msa0027490 MtrunA17_Chr8g0364791 34.568 243 137 6 10 234 6 244 7.84e-39 140
Msa0027490 MtrunA17_Chr2g0311661 35.841 226 116 6 12 210 23 246 4.67e-38 135
Msa0027490 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 1.01e-36 132
Msa0027490 MtrunA17_Chr1g0201021 45.033 151 75 3 12 156 21 169 2.26e-36 136
Msa0027490 MtrunA17_Chr8g0345671 46.939 147 73 4 10 153 11 155 3.81e-36 132
Msa0027490 MtrunA17_Chr8g0385991 40.000 160 85 3 3 153 7 164 7.90e-36 127
Msa0027490 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.26e-34 130
Msa0027490 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.69e-34 129
Msa0027490 MtrunA17_Chr3g0131911 41.463 164 82 3 8 159 12 173 2.82e-34 124
Msa0027490 MtrunA17_Chr3g0113001 46.667 135 61 4 58 183 13 145 5.22e-34 125
Msa0027490 MtrunA17_Chr2g0321631 42.405 158 75 6 11 154 5 160 1.30e-32 120
Msa0027490 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 1.38e-31 117
Msa0027490 MtrunA17_Chr4g0050701 36.364 165 85 3 10 163 11 166 5.42e-31 114
Msa0027490 MtrunA17_Chr7g0266701 36.585 164 88 6 10 158 4 166 1.86e-29 112
Msa0027490 MtrunA17_Chr8g0345711 42.636 129 70 3 10 135 12 139 8.14e-28 105
Msa0027490 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 1.83e-27 105
Msa0027490 MtrunA17_Chr3g0113031 38.068 176 77 6 73 221 3 173 2.15e-26 104
Msa0027490 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.45e-26 101
Msa0027490 MtrunA17_Chr7g0243371 53.750 80 37 0 65 144 19 98 6.03e-25 96.3
Msa0027490 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.16e-24 97.1
Msa0027490 MtrunA17_Chr2g0321741 41.600 125 67 4 30 153 12 131 1.56e-23 98.2
Msa0027490 MtrunA17_Chr8g0345741 36.496 137 78 4 21 154 2 132 6.43e-23 92.0
Msa0027490 MtrunA17_Chr8g0384351 37.748 151 76 5 8 158 8 140 9.85e-22 89.7
Msa0027490 MtrunA17_Chr3g0130321 28.814 177 99 5 8 169 5 169 4.63e-17 77.8
Msa0027490 MtrunA17_Chr7g0251651 33.333 135 84 4 7 139 15 145 4.79e-17 77.4
Msa0027490 MtrunA17_Chr7g0251671 34.211 152 84 5 1 145 1 143 8.22e-17 75.9
Msa0027490 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 3.08e-16 74.3
Msa0027490 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 1.34e-12 62.0
Msa0027490 MtrunA17_Chr2g0324961 28.313 166 96 6 9 156 48 208 3.93e-11 62.4
Msa0027490 MtrunA17_Chr3g0113041 51.163 43 21 0 14 56 23 65 7.88e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027490 AT4G28530.1 72.414 174 32 2 1 158 1 174 2.35e-89 269
Msa0027490 AT1G76420.1 57.500 160 65 1 9 165 21 180 1.36e-62 200
Msa0027490 AT1G56010.2 43.011 279 137 8 6 274 15 281 1.58e-61 197
Msa0027490 AT2G24430.2 56.291 151 63 1 9 156 15 165 3.22e-61 196
Msa0027490 AT2G24430.1 56.291 151 63 1 9 156 15 165 3.22e-61 196
Msa0027490 AT5G53950.1 50.276 181 84 1 10 184 17 197 1.04e-59 194
Msa0027490 AT2G18060.3 50.265 189 83 6 8 187 7 193 1.28e-59 194
Msa0027490 AT2G18060.1 50.265 189 83 6 8 187 7 193 1.28e-59 194
Msa0027490 AT5G07680.2 57.516 153 57 3 10 156 3 153 1.23e-58 189
Msa0027490 AT3G12977.1 56.410 156 61 3 6 156 14 167 1.26e-58 188
Msa0027490 AT3G18400.1 43.644 236 101 6 10 215 5 238 2.03e-58 189
Msa0027490 AT5G07680.1 56.329 158 61 3 5 156 12 167 2.03e-58 189
Msa0027490 AT4G36160.2 47.917 192 89 5 5 187 9 198 3.46e-58 190
Msa0027490 AT4G36160.1 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0027490 AT4G36160.3 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0027490 AT5G61430.1 56.863 153 58 3 10 156 16 166 4.83e-58 189
Msa0027490 AT5G39610.1 56.209 153 59 3 10 156 20 170 3.07e-56 182
Msa0027490 AT1G12260.2 53.947 152 63 3 10 156 7 156 5.68e-56 183
Msa0027490 AT1G12260.1 53.947 152 63 3 10 156 7 156 8.63e-56 184
Msa0027490 AT5G18270.1 53.892 167 66 4 10 170 21 182 1.24e-55 182
Msa0027490 AT5G18270.2 53.892 167 66 4 10 170 21 182 1.56e-55 182
Msa0027490 AT3G15170.1 52.667 150 65 1 10 153 20 169 2.83e-55 181
Msa0027490 AT1G62700.1 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0027490 AT1G62700.2 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0027490 AT4G28530.2 53.448 174 28 3 1 158 1 137 7.50e-55 180
Msa0027490 AT5G66300.1 53.086 162 68 4 4 159 6 165 1.25e-54 179
Msa0027490 AT3G04070.2 48.235 170 74 2 1 156 1 170 3.25e-54 179
Msa0027490 AT3G29035.1 55.263 152 60 2 10 155 24 173 5.39e-54 177
Msa0027490 AT3G04060.1 55.556 153 61 3 10 156 20 171 1.05e-53 177
Msa0027490 AT1G33280.1 39.510 286 141 10 8 271 6 281 1.77e-53 176
Msa0027490 AT4G10350.1 54.487 156 62 4 8 156 7 160 6.69e-53 176
Msa0027490 AT1G01720.1 40.870 230 118 5 10 224 7 233 2.67e-52 172
Msa0027490 AT1G71930.2 52.597 154 66 3 8 156 7 158 5.19e-52 173
Msa0027490 AT1G71930.1 52.597 154 66 3 8 156 7 158 5.19e-52 173
Msa0027490 AT3G04070.1 44.086 186 74 2 1 156 1 186 9.69e-52 173
Msa0027490 AT5G62380.2 47.059 187 88 5 8 186 5 188 1.07e-51 172
Msa0027490 AT5G62380.1 47.059 187 88 5 8 186 5 188 1.07e-51 172
Msa0027490 AT3G17730.1 46.703 182 87 4 8 183 4 181 3.16e-51 168
Msa0027490 AT1G61110.1 48.603 179 72 4 1 160 4 181 3.30e-51 171
Msa0027490 AT3G03200.1 43.902 205 100 5 8 203 4 202 4.33e-51 174
Msa0027490 AT5G17260.1 48.256 172 80 3 8 172 4 173 4.69e-51 174
Msa0027490 AT1G54330.1 56.291 151 61 3 9 156 5 153 8.67e-51 169
Msa0027490 AT1G65910.1 52.795 161 66 4 8 161 4 161 9.73e-49 171
Msa0027490 AT1G79580.3 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0027490 AT1G79580.5 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0027490 AT1G79580.4 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0027490 AT1G79580.2 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0027490 AT1G79580.1 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0027490 AT3G61910.1 43.147 197 87 5 8 183 9 201 1.26e-48 164
Msa0027490 AT5G08790.1 49.057 159 69 2 10 159 7 162 6.80e-48 161
Msa0027490 AT3G15500.1 49.390 164 73 3 1 156 1 162 9.82e-48 161
Msa0027490 AT1G52890.1 51.316 152 68 2 9 156 13 162 1.34e-47 161
Msa0027490 AT4G27410.2 46.286 175 84 4 1 167 1 173 1.81e-47 160
Msa0027490 AT2G46770.1 43.787 169 73 3 8 156 14 180 2.41e-47 162
Msa0027490 AT1G77450.1 49.057 159 69 3 7 156 5 160 2.63e-47 158
Msa0027490 AT5G63790.1 48.750 160 70 2 9 159 49 205 2.75e-47 160
Msa0027490 AT3G15510.1 38.426 216 103 4 14 209 21 226 2.82e-47 161
Msa0027490 AT1G32770.1 37.900 219 110 5 8 202 14 230 3.24e-47 161
Msa0027490 AT5G63790.2 48.750 160 70 2 9 159 59 215 3.53e-47 160
Msa0027490 AT1G69490.1 45.860 157 75 2 8 156 7 161 6.22e-47 158
Msa0027490 AT3G10480.1 50.318 157 69 3 7 156 24 178 3.14e-46 160
Msa0027490 AT3G10490.1 48.148 162 75 3 2 156 19 178 3.78e-46 155
Msa0027490 AT1G33060.2 52.597 154 65 3 9 156 23 174 3.81e-46 164
Msa0027490 AT1G33060.1 52.597 154 65 3 9 156 23 174 3.82e-46 164
Msa0027490 AT5G46590.1 36.546 249 125 7 8 236 4 239 4.43e-46 156
Msa0027490 AT5G04410.1 49.045 157 72 3 9 159 8 162 4.53e-46 162
Msa0027490 AT4G17980.1 37.903 248 132 5 8 242 4 242 1.59e-45 154
Msa0027490 AT5G13180.1 47.742 155 75 2 10 161 14 165 1.78e-45 154
Msa0027490 AT4G35580.1 53.247 154 64 3 9 156 8 159 2.26e-45 160
Msa0027490 AT4G35580.2 53.247 154 64 3 9 156 8 159 3.24e-45 160
Msa0027490 AT4G35580.3 53.247 154 64 3 9 156 8 159 3.26e-45 160
Msa0027490 AT3G10480.2 51.282 156 68 4 7 156 24 177 4.06e-45 158
Msa0027490 AT4G17980.2 37.903 248 132 5 8 242 4 242 5.08e-45 154
Msa0027490 AT3G10490.2 48.148 162 75 3 2 156 19 178 6.97e-45 157
Msa0027490 AT1G32510.1 38.723 235 118 7 6 225 2 225 1.78e-44 152
Msa0027490 AT5G39820.1 37.566 189 92 2 12 174 22 210 3.01e-44 153
Msa0027490 AT3G10500.1 48.052 154 72 3 9 156 8 159 1.75e-43 155
Msa0027490 AT1G26870.1 34.008 247 128 4 10 234 16 249 3.14e-43 152
Msa0027490 AT5G46590.2 51.515 132 61 2 8 137 4 134 3.23e-43 149
Msa0027490 AT4G27410.3 42.188 192 84 5 1 167 1 190 4.11e-43 149
Msa0027490 AT2G33480.2 46.795 156 76 3 10 163 15 165 7.89e-43 147
Msa0027490 AT2G33480.1 46.203 158 76 3 10 163 15 167 1.33e-42 147
Msa0027490 AT1G56010.1 38.596 228 115 5 58 274 1 214 1.50e-42 146
Msa0027490 AT5G24590.2 43.407 182 96 3 8 183 11 191 2.79e-42 150
Msa0027490 AT2G43000.1 42.593 162 84 3 12 167 20 178 2.99e-42 146
Msa0027490 AT3G10480.3 41.579 190 69 3 7 156 24 211 2.46e-40 146
Msa0027490 AT3G49530.2 45.455 154 77 3 9 156 12 164 4.40e-40 144
Msa0027490 AT3G49530.1 45.455 154 77 3 9 156 12 164 7.22e-40 144
Msa0027490 AT3G12977.2 60.748 107 35 3 55 156 10 114 8.83e-40 138
Msa0027490 AT2G02450.1 44.304 158 81 3 12 165 53 207 9.84e-40 142
Msa0027490 AT2G02450.2 44.304 158 81 3 12 165 53 207 1.26e-39 142
Msa0027490 AT1G52880.1 45.342 161 72 3 14 159 21 180 2.20e-39 140
Msa0027490 AT2G27300.1 44.898 147 75 3 8 153 12 153 7.54e-38 136
Msa0027490 AT5G09330.5 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0027490 AT5G09330.2 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0027490 AT5G09330.4 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0027490 AT5G09330.3 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0027490 AT5G09330.1 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0027490 AT2G17040.1 42.857 147 82 2 12 157 8 153 1.01e-36 132
Msa0027490 AT5G61430.2 59.048 105 35 3 58 156 1 103 1.56e-36 131
Msa0027490 AT1G34180.3 40.764 157 85 3 6 156 12 166 2.82e-36 134
Msa0027490 AT1G34190.1 41.722 151 80 3 12 156 18 166 8.70e-36 134
Msa0027490 AT1G34180.1 41.722 151 80 3 12 156 18 166 1.06e-35 134
Msa0027490 AT3G12910.1 36.087 230 123 7 12 220 23 249 4.22e-35 128
Msa0027490 AT4G10350.2 57.798 109 37 4 55 156 7 113 1.68e-34 126
Msa0027490 AT1G34180.4 37.870 169 85 3 6 156 12 178 3.27e-34 129
Msa0027490 AT1G34180.2 38.650 163 80 3 12 156 18 178 9.86e-34 129
Msa0027490 AT5G64060.1 39.610 154 85 3 9 156 5 156 2.05e-33 125
Msa0027490 AT1G32870.2 43.902 164 80 4 1 156 1 160 3.40e-33 127
Msa0027490 AT1G32870.1 43.902 164 80 4 1 156 1 160 4.08e-33 127
Msa0027490 AT1G32870.3 43.902 164 80 4 1 156 37 196 7.29e-33 126
Msa0027490 AT5G04395.1 42.384 151 73 2 1 137 19 169 1.99e-32 118
Msa0027490 AT5G22290.1 33.663 202 118 6 4 193 10 207 1.13e-31 120
Msa0027490 AT3G44290.2 39.860 143 80 3 12 153 16 153 1.00e-30 115
Msa0027490 AT3G44290.1 39.860 143 80 3 12 153 16 153 3.86e-30 115
Msa0027490 AT3G44350.2 35.814 215 116 8 6 206 1 207 6.24e-30 113
Msa0027490 AT4G01550.1 38.667 150 87 4 13 158 7 155 8.45e-29 114
Msa0027490 AT5G64530.1 32.941 170 84 3 9 160 2 159 1.32e-27 105
Msa0027490 AT3G44350.1 41.912 136 73 3 6 136 1 135 2.77e-27 103
Msa0027490 AT2G18060.2 49.057 106 46 5 88 187 2 105 5.96e-27 106
Msa0027490 AT5G22380.1 35.260 173 99 5 13 173 8 179 2.15e-26 103
Msa0027490 AT2G33480.3 48.077 104 48 2 64 163 9 110 2.58e-26 102
Msa0027490 AT4G01520.1 36.129 155 91 6 11 159 5 157 8.22e-26 103
Msa0027490 AT5G64530.2 37.500 128 68 2 10 137 3 118 2.96e-25 98.6
Msa0027490 AT1G02230.1 37.908 153 87 5 11 158 4 153 5.41e-25 102
Msa0027490 AT4G01540.3 35.948 153 90 6 13 159 7 157 1.17e-24 102
Msa0027490 AT4G01540.1 35.948 153 90 6 13 159 7 157 1.55e-24 102
Msa0027490 AT4G01540.4 35.948 153 90 6 13 159 7 157 1.63e-24 101
Msa0027490 AT4G01540.2 35.948 153 90 6 13 159 7 157 1.68e-24 102
Msa0027490 AT3G04420.2 33.775 151 93 4 11 157 4 151 2.26e-23 97.1
Msa0027490 AT3G04420.1 33.775 151 93 4 11 157 4 151 4.43e-23 97.1
Msa0027490 AT1G01010.1 30.568 229 130 9 13 219 6 227 7.76e-21 91.7
Msa0027490 AT3G10490.4 53.165 79 30 2 83 156 2 78 2.60e-19 86.7
Msa0027490 AT3G10490.3 53.165 79 30 2 83 156 2 78 2.60e-19 86.7
Msa0027490 AT2G43000.2 39.640 111 58 3 71 175 1 108 3.69e-19 83.6
Msa0027490 AT1G02250.1 32.680 153 95 4 11 158 4 153 2.31e-18 84.0
Msa0027490 AT1G02220.1 31.126 151 94 5 11 157 4 148 8.03e-18 82.8
Msa0027490 AT3G04430.1 36.957 138 73 5 16 141 6 141 3.30e-17 78.2
Msa0027490 AT5G50820.1 37.226 137 62 6 10 137 17 138 3.76e-16 75.1
Msa0027490 AT3G56530.1 27.815 151 102 4 9 154 51 199 6.35e-16 76.6
Msa0027490 AT5G14000.2 31.579 133 85 3 7 137 12 140 5.11e-14 68.6
Msa0027490 AT3G55210.1 26.994 163 103 4 6 154 7 167 2.75e-13 68.9
Msa0027490 AT5G14000.1 31.579 133 85 3 7 137 12 140 2.85e-13 67.8
Msa0027490 AT1G28470.1 28.814 177 105 6 9 168 76 248 2.45e-12 66.2
Msa0027490 AT5G22290.2 34.234 111 63 4 89 193 2 108 9.52e-12 63.9

Find 103 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCTTGTGGACTTAATT+TGG 0.161042 1_1:-51834785 None:intergenic
TTGGATAGGTAGTGGGTTTA+TGG 0.178084 1_1:-51831538 None:intergenic
GATTCATCAAAGAATTATTT+TGG 0.212245 1_1:-51834918 None:intergenic
TAGGGTTTCATTTGGTTATT+GGG 0.220851 1_1:+51835301 Msa0027490:three_prime_UTR
TATATAGTGTTTGGCTTCAT+AGG 0.225282 1_1:+51835209 Msa0027490:three_prime_UTR
TTAGGGTTTCATTTGGTTAT+TGG 0.232819 1_1:+51835300 Msa0027490:three_prime_UTR
CCCAGATGTTGTTGCCCTAT+TGG 0.241618 1_1:-51833712 None:intergenic
TTGGCATGGTTTGGTTGGTT+AGG 0.262175 1_1:-51834828 None:intergenic
CCATATCCATCATCACATTT+AGG 0.299554 1_1:-51834997 None:intergenic
ACGTGCATGATTGGGATTAT+AGG 0.305437 1_1:+51835239 Msa0027490:three_prime_UTR
ACCAATAGGGCAACAACATC+TGG 0.310609 1_1:+51833711 Msa0027490:CDS
CCTAAATGTGATGATGGATA+TGG 0.311726 1_1:+51834997 Msa0027490:CDS
AGTGTTCAGTGTGATTGGTT+AGG 0.323517 1_1:+51835282 Msa0027490:three_prime_UTR
TAAAACCTGTGGCATATTTA+CGG 0.326045 1_1:-51833686 None:intergenic
AAGATGAGAAAGAAGCAAAT+TGG 0.341217 1_1:-51834861 None:intergenic
TGCGAGCCTTGGCAACTTCC+TGG 0.343644 1_1:+51831759 Msa0027490:CDS
GTTGGATCATGCATGAGTTT+AGG 0.344473 1_1:+51833853 Msa0027490:CDS
TTTCATTTGGTTATTGGGAG+GGG 0.344683 1_1:+51835306 Msa0027490:three_prime_UTR
GGGCATGCCACGTGCATGAT+TGG 0.350732 1_1:+51835230 Msa0027490:three_prime_UTR
TGGCATGGTTTGGTTGGTTA+GGG 0.355057 1_1:-51834827 None:intergenic
TTCATTTGGTTATTGGGAGG+GGG 0.361369 1_1:+51835307 Msa0027490:three_prime_UTR
GTGTTCAGTGTGATTGGTTA+GGG 0.362556 1_1:+51835283 Msa0027490:three_prime_UTR
TTATCCTAGTGATGAAGAAT+TGG 0.381724 1_1:+51831659 Msa0027490:CDS
CACATTGATTAGCATTTGTA+GGG 0.386550 1_1:+51835335 Msa0027490:three_prime_UTR
ACCAACCAAACCATGCCAAT+TGG 0.386891 1_1:+51834832 Msa0027490:CDS
AGTGGGTTTATGGATATATA+TGG 0.387627 1_1:-51831528 None:intergenic
GTGTACATATATTATGTATA+TGG 0.388159 1_1:+51835139 Msa0027490:three_prime_UTR
TTTCAAGTGTTCAGTGTGAT+TGG 0.389446 1_1:+51835277 Msa0027490:three_prime_UTR
TGGTTTGGTTGGTTAGGGAT+GGG 0.392064 1_1:-51834822 None:intergenic
GGTTTGGTTGGTTAGGGATG+GGG 0.395087 1_1:-51834821 None:intergenic
GGAAAACTCTAGTGTTCTAT+AGG 0.402144 1_1:+51833802 Msa0027490:CDS
ATGGTTTGGTTGGTTAGGGA+TGG 0.404562 1_1:-51834823 None:intergenic
CGTACCTTAGGTGGCATATG+TGG 0.408299 1_1:-51833885 None:intergenic
TGATTGGTTAGGGTTTCATT+TGG 0.414632 1_1:+51835293 Msa0027490:three_prime_UTR
CCAACCAAACCATGCCAATT+GGG 0.419454 1_1:+51834833 Msa0027490:CDS
CCTACAACCTCATGTGTGAT+TGG 0.419579 1_1:-51833774 None:intergenic
ACACATTGATTAGCATTTGT+AGG 0.419765 1_1:+51835334 Msa0027490:three_prime_UTR
GCTCCAAATGGAATCAAAAC+AGG 0.425014 1_1:+51833831 Msa0027490:CDS
TGTACCCAATTGGCATGGTT+TGG 0.430448 1_1:-51834837 None:intergenic
TGTAAGCTAGGGAGAGAAAG+AGG 0.432554 1_1:-51831580 None:intergenic
TTGTGTAGAGTATTTCATAA+AGG 0.437100 1_1:+51834745 Msa0027490:CDS
GTTTCATTTGGTTATTGGGA+GGG 0.437465 1_1:+51835305 Msa0027490:three_prime_UTR
GGGCAACAACATCTGGGTAT+TGG 0.439791 1_1:+51833718 Msa0027490:CDS
GCAAATTGGTTGTACCCAAT+TGG 0.440675 1_1:-51834847 None:intergenic
TTTGTTGATTACAGGAAGAC+TGG 0.444436 1_1:+51834719 Msa0027490:intron
CTAGCTTACAAAATTAATCA+TGG 0.444500 1_1:+51831593 Msa0027490:exon
GGTTTCATTTGGTTATTGGG+AGG 0.448742 1_1:+51835304 Msa0027490:three_prime_UTR
CTCATTTAAATGACAATGGT+GGG 0.454810 1_1:-51834893 None:intergenic
GGTTCTTATCTCTCAAGTTA+CGG 0.467662 1_1:+51835160 Msa0027490:three_prime_UTR
CCAATCACACATGAGGTTGT+AGG 0.470021 1_1:+51833774 Msa0027490:CDS
TCTCAAGTTACGGAAATTTG+TGG 0.472207 1_1:+51835170 Msa0027490:three_prime_UTR
TCTGGGTATTGGAAAGCAAC+AGG 0.476335 1_1:+51833729 Msa0027490:CDS
GGCATGCCACGTGCATGATT+GGG 0.477476 1_1:+51835231 Msa0027490:three_prime_UTR
ATTAGTCCTAAATGTGATGA+TGG 0.485409 1_1:+51834991 Msa0027490:CDS
CCCAATTGGCATGGTTTGGT+TGG 0.487255 1_1:-51834833 None:intergenic
CTAGGATAAAATCGAAAGCC+AGG 0.494510 1_1:-51831645 None:intergenic
ATGTAATCATATATAGTGTT+TGG 0.501160 1_1:+51835200 Msa0027490:three_prime_UTR
CACAAATGAGGATGTTCTCA+AGG 0.510472 1_1:+51831707 Msa0027490:CDS
ATATAGTGTTTGGCTTCATA+GGG 0.512678 1_1:+51835210 Msa0027490:three_prime_UTR
CGTGACCGTAAATATGCCAC+AGG 0.515429 1_1:+51833681 Msa0027490:CDS
GATCATGCATGAGTTTAGGT+TGG 0.515996 1_1:+51833857 Msa0027490:CDS
ACTTGCATACATGCGAGCCT+TGG 0.522819 1_1:+51831748 Msa0027490:CDS
TCTCATTTAAATGACAATGG+TGG 0.533934 1_1:-51834894 None:intergenic
CTAAACTCAACGCAACTGAA+TGG 0.538893 1_1:+51833643 Msa0027490:CDS
TATAGGAATAGAGCTCCAAA+TGG 0.544085 1_1:+51833819 Msa0027490:CDS
GGATGTTCTCAAGGGTACCT+TGG 0.551085 1_1:+51831716 Msa0027490:CDS
TGTTCTCAAGGGTACCTTGG+AGG 0.553598 1_1:+51831719 Msa0027490:CDS
TAGCTTACAAAATTAATCAT+GGG 0.557425 1_1:+51831594 Msa0027490:exon
GGTTCTCATTTAAATGACAA+TGG 0.558939 1_1:-51834897 None:intergenic
CACATGAGGTTGTAGGAATG+AGG 0.561923 1_1:+51833781 Msa0027490:CDS
GTACCTTAGGTGGCATATGT+GGG 0.562749 1_1:-51833884 None:intergenic
CTAAATGTGATGATGGATAT+GGG 0.563079 1_1:+51834998 Msa0027490:CDS
TTTATGGATATATATGGTAG+AGG 0.568550 1_1:-51831522 None:intergenic
CAAATGGAATCAAAACAGGT+TGG 0.568983 1_1:+51833835 Msa0027490:CDS
ATAGTCTCATACATTTCTTG+TGG 0.571583 1_1:-51834796 None:intergenic
AGGACCAATTCTTCATCACT+AGG 0.581995 1_1:-51831663 None:intergenic
ATCATGGGTCTTAGAGATGT+CGG 0.583109 1_1:+51831609 Msa0027490:exon
TTGGTTGTACCCAATTGGCA+TGG 0.593786 1_1:-51834842 None:intergenic
TTGTTGATTACAGGAAGACT+GGG 0.594796 1_1:+51834720 Msa0027490:intron
CATGGAAGGAATGAGATTCG+AGG 0.594984 1_1:+51835074 Msa0027490:CDS
GACCCCACATATGCCACCTA+AGG 0.595376 1_1:+51833881 Msa0027490:CDS
CCAATAGGGCAACAACATCT+GGG 0.597019 1_1:+51833712 Msa0027490:CDS
TATATACCAGGAAGTTGCCA+AGG 0.602199 1_1:-51831765 None:intergenic
TAGGATAAAATCGAAAGCCA+GGG 0.604860 1_1:-51831644 None:intergenic
CATTCCTTCCATGTCTGATG+AGG 0.604861 1_1:-51835064 None:intergenic
ATGCAAGTCAATTTCCTCCA+AGG 0.605909 1_1:-51831733 None:intergenic
CCTATTGGTTCTAAAACCTG+TGG 0.612834 1_1:-51833697 None:intergenic
CGAGGTTGATAATAATAGCA+TGG 0.613330 1_1:+51835092 Msa0027490:CDS
CATTGATTAGCATTTGTAGG+GGG 0.623982 1_1:+51835337 Msa0027490:three_prime_UTR
AGCAACAGGAAAGGATCGAA+CGG 0.629108 1_1:+51833743 Msa0027490:CDS
GGATATATATGGTAGAGGTG+TGG 0.633029 1_1:-51831517 None:intergenic
TGGTGTGGCCTCATCAGACA+TGG 0.638421 1_1:+51835056 Msa0027490:CDS
TACCTTAGGTGGCATATGTG+GGG 0.640655 1_1:-51833883 None:intergenic
GTTTGATCCAATCACACATG+AGG 0.642011 1_1:+51833767 Msa0027490:CDS
GTGGCCTCATCAGACATGGA+AGG 0.645880 1_1:+51835060 Msa0027490:CDS
ACAAATGAGGATGTTCTCAA+GGG 0.646017 1_1:+51831708 Msa0027490:CDS
GTATTGGAAAGCAACAGGAA+AGG 0.658210 1_1:+51833734 Msa0027490:CDS
ACATTGATTAGCATTTGTAG+GGG 0.662335 1_1:+51835336 Msa0027490:three_prime_UTR
GATTTGGAAGATCATCATGA+TGG 0.674805 1_1:+51835036 Msa0027490:CDS
GGAAGATCATCATGATGGTG+TGG 0.675111 1_1:+51835041 Msa0027490:CDS
AGGATAAAATCGAAAGCCAG+GGG 0.675897 1_1:-51831643 None:intergenic
TATAATCCCAATCATGCACG+TGG 0.713373 1_1:-51835237 None:intergenic
GGATAAAATCGAAAGCCAGG+GGG 0.720221 1_1:-51831642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAAAATTATTTAT+TGG - chr1_1:51832249-51832268 None:intergenic 0.0%
!!! AATAATTTTTTTATATAATA+TGG + chr1_1:51832252-51832271 Msa0027490:intron 0.0%
!!! AAGATATATTTTTGAAATTT+TGG - chr1_1:51831560-51831579 None:intergenic 10.0%
!! AATAAAATAAAAGAGAAAAT+TGG + chr1_1:51832121-51832140 Msa0027490:intron 10.0%
!!! TTTTTTTTATTTTTATTCAG+AGG + chr1_1:51833617-51833636 Msa0027490:intron 10.0%
!! TTAGGTATAAATAAAAAAAT+TGG + chr1_1:51834097-51834116 Msa0027490:intron 10.0%
!!! ATATTTTTGAAATTTTGGAT+AGG - chr1_1:51831555-51831574 None:intergenic 15.0%
!! TGATAAATATAATATATACC+AGG - chr1_1:51831780-51831799 None:intergenic 15.0%
!! TTAACCATATATTAATTCTT+TGG + chr1_1:51831866-51831885 Msa0027490:intron 15.0%
!! TTAACCAAAGAATTAATATA+TGG - chr1_1:51831873-51831892 None:intergenic 15.0%
!! TCAACTCATAAATAAATATA+AGG - chr1_1:51831978-51831997 None:intergenic 15.0%
!! AAAGAAGAAGAAATAATTAA+AGG + chr1_1:51832045-51832064 Msa0027490:intron 15.0%
!! AGATCATAATAATATTGTTT+GGG - chr1_1:51832363-51832382 None:intergenic 15.0%
!!! ATTTAAAGTGTATACAAAAT+AGG + chr1_1:51832857-51832876 Msa0027490:intron 15.0%
!! AAAAAAATTATCGTTATTGA+TGG + chr1_1:51832952-51832971 Msa0027490:intron 15.0%
!! CAATAATGACAAAAATAATT+TGG - chr1_1:51833427-51833446 None:intergenic 15.0%
!!! TTATATGTGTAGTTTTTATT+AGG + chr1_1:51834079-51834098 Msa0027490:intron 15.0%
!!! TGTTTTAATGTTTTTTGAAA+TGG - chr1_1:51834307-51834326 None:intergenic 15.0%
!! TAAATCTCTTAATTAAGATT+TGG - chr1_1:51834555-51834574 None:intergenic 15.0%
!!! CTTTAAAAATCTAGTTATTT+TGG + chr1_1:51834666-51834685 Msa0027490:intron 15.0%
!!! ATGATTAATTTTGTAAGCTA+GGG - chr1_1:51831594-51831613 None:intergenic 20.0%
!! TAGCTTACAAAATTAATCAT+GGG + chr1_1:51831594-51831613 Msa0027490:exon 20.0%
!!! TTTTTTTGTAAAGGTAATGA+AGG - chr1_1:51831686-51831705 None:intergenic 20.0%
!!! CATTTGTGATTTTTTTGTAA+AGG - chr1_1:51831695-51831714 None:intergenic 20.0%
!! TTACAAAAAAATCACAAATG+AGG + chr1_1:51831695-51831714 Msa0027490:CDS 20.0%
!!! ATATTTGCCTTTTTAAAAGA+AGG + chr1_1:51832008-51832027 Msa0027490:intron 20.0%
!!! AAAGTTTCCTTCTTTTAAAA+AGG - chr1_1:51832018-51832037 None:intergenic 20.0%
!!! TTTTTAAAAGAAGGAAACTT+TGG + chr1_1:51832017-51832036 Msa0027490:intron 20.0%
!! ATAAAAGAGAAAATTGGTTA+TGG + chr1_1:51832127-51832146 Msa0027490:intron 20.0%
!! TAAAAGAGAAAATTGGTTAT+GGG + chr1_1:51832128-51832147 Msa0027490:intron 20.0%
!! ACAAAAGCAATTATGTAAAA+CGG - chr1_1:51832293-51832312 None:intergenic 20.0%
!! GAGATCATAATAATATTGTT+TGG - chr1_1:51832364-51832383 None:intergenic 20.0%
!! ATTAATCAAATGAAAGTGAA+AGG - chr1_1:51832489-51832508 None:intergenic 20.0%
!! TTATGTTACAATTTATGACA+AGG - chr1_1:51832722-51832741 None:intergenic 20.0%
!!! GTATATTTTGTAGACTTTAA+TGG - chr1_1:51832920-51832939 None:intergenic 20.0%
!!! ATTAATCAAACATTAGCTTA+TGG + chr1_1:51833114-51833133 Msa0027490:intron 20.0%
!! TAACATGAAAAATTGCTTAT+TGG - chr1_1:51833186-51833205 None:intergenic 20.0%
!!! TTTTTATTTTTATTCAGAGG+TGG + chr1_1:51833620-51833639 Msa0027490:intron 20.0%
!!! TTTTTTTAATAAACTTGACG+TGG + chr1_1:51834414-51834433 Msa0027490:intron 20.0%
!! AGAATAGAATATTTCATAAG+TGG + chr1_1:51834599-51834618 Msa0027490:intron 20.0%
!!! GATTCATCAAAGAATTATTT+TGG - chr1_1:51834921-51834940 None:intergenic 20.0%
!! GTGTACATATATTATGTATA+TGG + chr1_1:51835139-51835158 Msa0027490:three_prime_UTR 20.0%
!! ATGTAATCATATATAGTGTT+TGG + chr1_1:51835200-51835219 Msa0027490:three_prime_UTR 20.0%
! TTTATGGATATATATGGTAG+AGG - chr1_1:51831525-51831544 None:intergenic 25.0%
!! CATGATTAATTTTGTAAGCT+AGG - chr1_1:51831595-51831614 None:intergenic 25.0%
! CTAGCTTACAAAATTAATCA+TGG + chr1_1:51831593-51831612 Msa0027490:exon 25.0%
! AAAAGAGAAAATTGGTTATG+GGG + chr1_1:51832129-51832148 Msa0027490:intron 25.0%
! TTCAATGATTAAGGCTATTA+AGG + chr1_1:51832193-51832212 Msa0027490:intron 25.0%
! TCAATGATTAAGGCTATTAA+GGG + chr1_1:51832194-51832213 Msa0027490:intron 25.0%
!! TTTTCTTTATGCGGTTAAAA+CGG + chr1_1:51832425-51832444 Msa0027490:intron 25.0%
! ATATAGACTTAAATACATGC+AGG - chr1_1:51832583-51832602 None:intergenic 25.0%
!! ATCTTTCACACAAATGTTTT+GGG + chr1_1:51832641-51832660 Msa0027490:intron 25.0%
!! TCTTTTGTGAATGATAATTG+AGG + chr1_1:51832685-51832704 Msa0027490:intron 25.0%
! TTACAATTTATGACAAGGTA+TGG - chr1_1:51832717-51832736 None:intergenic 25.0%
! ATACACTATCAAAGCAAAAT+AGG + chr1_1:51832833-51832852 Msa0027490:intron 25.0%
!! ATCGTTATTGATGGTAAAAT+TGG + chr1_1:51832961-51832980 Msa0027490:intron 25.0%
!! AAACTCCTCTTTTTGTAAAT+GGG + chr1_1:51833211-51833230 Msa0027490:intron 25.0%
! ACTGAAAAATACAAAGAGAA+CGG + chr1_1:51833239-51833258 Msa0027490:intron 25.0%
! AGTAAAAATAAACGTACCTT+AGG - chr1_1:51833900-51833919 None:intergenic 25.0%
! ACGTTTGAAAATTGATTGAA+AGG - chr1_1:51833932-51833951 None:intergenic 25.0%
! ATGTAATTGCCACATAATAA+AGG + chr1_1:51834008-51834027 Msa0027490:intron 25.0%
! TGTAATTGCCACATAATAAA+GGG + chr1_1:51834009-51834028 Msa0027490:intron 25.0%
! AAGATAAAATATCTCCATCA+AGG - chr1_1:51834244-51834263 None:intergenic 25.0%
!! AGAGCTAGCTATTTAAAATA+AGG + chr1_1:51834449-51834468 Msa0027490:intron 25.0%
! TTAAAATAAGGTGAGAAAGT+TGG + chr1_1:51834461-51834480 Msa0027490:intron 25.0%
!! ATTGTTGTCATTGATTGAAT+TGG + chr1_1:51834574-51834593 Msa0027490:intron 25.0%
!! AAATGATTCTCACGTATTTT+AGG + chr1_1:51834627-51834646 Msa0027490:intron 25.0%
!!! TTCAAACTTTTGTTGATTAC+AGG + chr1_1:51834711-51834730 Msa0027490:intron 25.0%
!! TTGTGTAGAGTATTTCATAA+AGG + chr1_1:51834745-51834764 Msa0027490:CDS 25.0%
!! GAATCTTCTTCAATTTTCTA+AGG + chr1_1:51834936-51834955 Msa0027490:CDS 25.0%
! AGTGGGTTTATGGATATATA+TGG - chr1_1:51831531-51831550 None:intergenic 30.0%
! TGAAATTTTGGATAGGTAGT+GGG - chr1_1:51831548-51831567 None:intergenic 30.0%
! TTGAAATTTTGGATAGGTAG+TGG - chr1_1:51831549-51831568 None:intergenic 30.0%
TTATCCTAGTGATGAAGAAT+TGG + chr1_1:51831659-51831678 Msa0027490:CDS 30.0%
AATTGACATTCACAAACACA+TGG + chr1_1:51831891-51831910 Msa0027490:intron 30.0%
TACGGCATCATTAATTAACT+TGG + chr1_1:51831916-51831935 Msa0027490:intron 30.0%
GTTCAGTTCTTCAATGATTA+AGG + chr1_1:51832184-51832203 Msa0027490:intron 30.0%
TACAGCAGAAAAAAACAACT+AGG - chr1_1:51832333-51832352 None:intergenic 30.0%
!! TCTTCTTGCTTTTCTTTATG+CGG + chr1_1:51832416-51832435 Msa0027490:intron 30.0%
!! CTCTAGGTATTTTACTTTTG+TGG + chr1_1:51832451-51832470 Msa0027490:intron 30.0%
GTGAAAGATCAAATGTTGTA+TGG - chr1_1:51832630-51832649 None:intergenic 30.0%
! GATCTTTCACACAAATGTTT+TGG + chr1_1:51832640-51832659 Msa0027490:intron 30.0%
AGAAAGTCGTCATACAAAAT+AGG + chr1_1:51832798-51832817 Msa0027490:intron 30.0%
! CAAACTCCTCTTTTTGTAAA+TGG + chr1_1:51833210-51833229 Msa0027490:intron 30.0%
! AACTCCTCTTTTTGTAAATG+GGG + chr1_1:51833212-51833231 Msa0027490:intron 30.0%
!!! ACCTAAGCATGTTATTTTTG+GGG - chr1_1:51833304-51833323 None:intergenic 30.0%
!!! GACCTAAGCATGTTATTTTT+GGG - chr1_1:51833305-51833324 None:intergenic 30.0%
!!! TGACCTAAGCATGTTATTTT+TGG - chr1_1:51833306-51833325 None:intergenic 30.0%
!! TTTCAAGTTTCCAATTGAGA+CGG - chr1_1:51833335-51833354 None:intergenic 30.0%
TATGGAAAAACATGTGACTT+AGG - chr1_1:51833547-51833566 None:intergenic 30.0%
! AAGTCACATGTTTTTCCATA+TGG + chr1_1:51833547-51833566 Msa0027490:intron 30.0%
!!! GGTCAATTTTTAGTACCATA+TGG - chr1_1:51833565-51833584 None:intergenic 30.0%
CATGCATGAATAGAGATAAT+AGG - chr1_1:51833586-51833605 None:intergenic 30.0%
TAAAACCTGTGGCATATTTA+CGG - chr1_1:51833689-51833708 None:intergenic 30.0%
AAAAATAAACGTACCTTAGG+TGG - chr1_1:51833897-51833916 None:intergenic 30.0%
! TTTTCAAACGTGACAATGAT+AGG + chr1_1:51833941-51833960 Msa0027490:intron 30.0%
! AAGATTACAACTTGCTTCTT+AGG - chr1_1:51834126-51834145 None:intergenic 30.0%
GAACTACTATTATACCTTGA+TGG + chr1_1:51834227-51834246 Msa0027490:intron 30.0%
!!! TTAGCATCTTTTTGAGATAG+AGG + chr1_1:51834498-51834517 Msa0027490:intron 30.0%
CATTTCTTGTGGACTTAATT+TGG - chr1_1:51834788-51834807 None:intergenic 30.0%
ATAGTCTCATACATTTCTTG+TGG - chr1_1:51834799-51834818 None:intergenic 30.0%
AAGATGAGAAAGAAGCAAAT+TGG - chr1_1:51834864-51834883 None:intergenic 30.0%
CTCATTTAAATGACAATGGT+GGG - chr1_1:51834896-51834915 None:intergenic 30.0%
TCTCATTTAAATGACAATGG+TGG - chr1_1:51834897-51834916 None:intergenic 30.0%
GGTTCTCATTTAAATGACAA+TGG - chr1_1:51834900-51834919 None:intergenic 30.0%
ATTAGTCCTAAATGTGATGA+TGG + chr1_1:51834991-51835010 Msa0027490:CDS 30.0%
!! CTAAATGTGATGATGGATAT+GGG + chr1_1:51834998-51835017 Msa0027490:CDS 30.0%
! TATATAGTGTTTGGCTTCAT+AGG + chr1_1:51835209-51835228 Msa0027490:three_prime_UTR 30.0%
! ATATAGTGTTTGGCTTCATA+GGG + chr1_1:51835210-51835229 Msa0027490:three_prime_UTR 30.0%
TTAGGGTTTCATTTGGTTAT+TGG + chr1_1:51835300-51835319 Msa0027490:three_prime_UTR 30.0%
TAGGGTTTCATTTGGTTATT+GGG + chr1_1:51835301-51835320 Msa0027490:three_prime_UTR 30.0%
! ACACATTGATTAGCATTTGT+AGG + chr1_1:51835334-51835353 Msa0027490:three_prime_UTR 30.0%
! CACATTGATTAGCATTTGTA+GGG + chr1_1:51835335-51835354 Msa0027490:three_prime_UTR 30.0%
! ACATTGATTAGCATTTGTAG+GGG + chr1_1:51835336-51835355 Msa0027490:three_prime_UTR 30.0%
TAGGATAAAATCGAAAGCCA+GGG - chr1_1:51831647-51831666 None:intergenic 35.0%
ACAAATGAGGATGTTCTCAA+GGG + chr1_1:51831708-51831727 Msa0027490:CDS 35.0%
ATTCACAAACACATGGTGTA+CGG + chr1_1:51831898-51831917 Msa0027490:intron 35.0%
TGCTTTGCGAATATTCTGTA+AGG + chr1_1:51833036-51833055 Msa0027490:intron 35.0%
TTCACCCCATTTACAAAAAG+AGG - chr1_1:51833219-51833238 None:intergenic 35.0%
ACCCCAAAAATAACATGCTT+AGG + chr1_1:51833300-51833319 Msa0027490:intron 35.0%
GACTTAGGTAGGTAAAACAA+GGG - chr1_1:51833532-51833551 None:intergenic 35.0%
TGACTTAGGTAGGTAAAACA+AGG - chr1_1:51833533-51833552 None:intergenic 35.0%
GAAAAACATGTGACTTAGGT+AGG - chr1_1:51833543-51833562 None:intergenic 35.0%
!!! CACAGGTTTTAGAACCAATA+GGG + chr1_1:51833698-51833717 Msa0027490:CDS 35.0%
GGAAAACTCTAGTGTTCTAT+AGG + chr1_1:51833802-51833821 Msa0027490:CDS 35.0%
TATAGGAATAGAGCTCCAAA+TGG + chr1_1:51833819-51833838 Msa0027490:CDS 35.0%
!!! CAACCTGTTTTGATTCCATT+TGG - chr1_1:51833837-51833856 None:intergenic 35.0%
CAAATGGAATCAAAACAGGT+TGG + chr1_1:51833835-51833854 Msa0027490:CDS 35.0%
ATCACACTCCCTTTATTATG+TGG - chr1_1:51834020-51834039 None:intergenic 35.0%
ATTAAACCCTCACAAACCAT+AGG - chr1_1:51834047-51834066 None:intergenic 35.0%
AATGTCCATTTAGTAGTGTG+AGG + chr1_1:51834169-51834188 Msa0027490:intron 35.0%
AAATAAGGTGAGAAAGTTGG+AGG + chr1_1:51834464-51834483 Msa0027490:intron 35.0%
AGGAAAACAATGTGTATGTG+AGG + chr1_1:51834518-51834537 Msa0027490:intron 35.0%
!!! TGTGTATGTGAGGACTTTTT+TGG + chr1_1:51834528-51834547 Msa0027490:intron 35.0%
! TTTGTTGATTACAGGAAGAC+TGG + chr1_1:51834719-51834738 Msa0027490:intron 35.0%
! TTGTTGATTACAGGAAGACT+GGG + chr1_1:51834720-51834739 Msa0027490:intron 35.0%
CCATATCCATCATCACATTT+AGG - chr1_1:51835000-51835019 None:intergenic 35.0%
!! CCTAAATGTGATGATGGATA+TGG + chr1_1:51834997-51835016 Msa0027490:CDS 35.0%
!!! ATGATGGATATGGGTTTTTG+TGG + chr1_1:51835007-51835026 Msa0027490:CDS 35.0%
!! TGATGGATATGGGTTTTTGT+GGG + chr1_1:51835008-51835027 Msa0027490:CDS 35.0%
GATTTGGAAGATCATCATGA+TGG + chr1_1:51835036-51835055 Msa0027490:CDS 35.0%
!! CGAGGTTGATAATAATAGCA+TGG + chr1_1:51835092-51835111 Msa0027490:CDS 35.0%
GGTTCTTATCTCTCAAGTTA+CGG + chr1_1:51835160-51835179 Msa0027490:three_prime_UTR 35.0%
TCTCAAGTTACGGAAATTTG+TGG + chr1_1:51835170-51835189 Msa0027490:three_prime_UTR 35.0%
! TTTCAAGTGTTCAGTGTGAT+TGG + chr1_1:51835277-51835296 Msa0027490:three_prime_UTR 35.0%
! TGATTGGTTAGGGTTTCATT+TGG + chr1_1:51835293-51835312 Msa0027490:three_prime_UTR 35.0%
GTTTCATTTGGTTATTGGGA+GGG + chr1_1:51835305-51835324 Msa0027490:three_prime_UTR 35.0%
TTTCATTTGGTTATTGGGAG+GGG + chr1_1:51835306-51835325 Msa0027490:three_prime_UTR 35.0%
! CATTGATTAGCATTTGTAGG+GGG + chr1_1:51835337-51835356 Msa0027490:three_prime_UTR 35.0%
GGATATATATGGTAGAGGTG+TGG - chr1_1:51831520-51831539 None:intergenic 40.0%
!! TTGGATAGGTAGTGGGTTTA+TGG - chr1_1:51831541-51831560 None:intergenic 40.0%
ATCATGGGTCTTAGAGATGT+CGG + chr1_1:51831609-51831628 Msa0027490:exon 40.0%
AGGATAAAATCGAAAGCCAG+GGG - chr1_1:51831646-51831665 None:intergenic 40.0%
CTAGGATAAAATCGAAAGCC+AGG - chr1_1:51831648-51831667 None:intergenic 40.0%
AGGACCAATTCTTCATCACT+AGG - chr1_1:51831666-51831685 None:intergenic 40.0%
CACAAATGAGGATGTTCTCA+AGG + chr1_1:51831707-51831726 Msa0027490:CDS 40.0%
ATGCAAGTCAATTTCCTCCA+AGG - chr1_1:51831736-51831755 None:intergenic 40.0%
TATATACCAGGAAGTTGCCA+AGG - chr1_1:51831768-51831787 None:intergenic 40.0%
! GTCACTTTATCCGTCTCAAT+TGG + chr1_1:51833322-51833341 Msa0027490:intron 40.0%
CTAAACTCAACGCAACTGAA+TGG + chr1_1:51833643-51833662 Msa0027490:CDS 40.0%
!! CCTATTGGTTCTAAAACCTG+TGG - chr1_1:51833700-51833719 None:intergenic 40.0%
!!! CCACAGGTTTTAGAACCAAT+AGG + chr1_1:51833697-51833716 Msa0027490:CDS 40.0%
GTATTGGAAAGCAACAGGAA+AGG + chr1_1:51833734-51833753 Msa0027490:CDS 40.0%
GTTTGATCCAATCACACATG+AGG + chr1_1:51833767-51833786 Msa0027490:CDS 40.0%
GCTCCAAATGGAATCAAAAC+AGG + chr1_1:51833831-51833850 Msa0027490:CDS 40.0%
GTTGGATCATGCATGAGTTT+AGG + chr1_1:51833853-51833872 Msa0027490:CDS 40.0%
GATCATGCATGAGTTTAGGT+TGG + chr1_1:51833857-51833876 Msa0027490:CDS 40.0%
! ATGAAGCCTATGGTTTGTGA+GGG + chr1_1:51834038-51834057 Msa0027490:intron 40.0%
TGGATCCTCACACTACTAAA+TGG - chr1_1:51834177-51834196 None:intergenic 40.0%
!! TCAAAGCGCATTAGCTTTAG+TGG - chr1_1:51834197-51834216 None:intergenic 40.0%
GCAAATTGGTTGTACCCAAT+TGG - chr1_1:51834850-51834869 None:intergenic 40.0%
! ATATGGGTTTTTGTGGGACA+TGG + chr1_1:51835014-51835033 Msa0027490:CDS 40.0%
! GTTTTTGTGGGACATGGATT+TGG + chr1_1:51835020-51835039 Msa0027490:CDS 40.0%
TATAATCCCAATCATGCACG+TGG - chr1_1:51835240-51835259 None:intergenic 40.0%
ACGTGCATGATTGGGATTAT+AGG + chr1_1:51835239-51835258 Msa0027490:three_prime_UTR 40.0%
! AGTGTTCAGTGTGATTGGTT+AGG + chr1_1:51835282-51835301 Msa0027490:three_prime_UTR 40.0%
! GTGTTCAGTGTGATTGGTTA+GGG + chr1_1:51835283-51835302 Msa0027490:three_prime_UTR 40.0%
GGTTTCATTTGGTTATTGGG+AGG + chr1_1:51835304-51835323 Msa0027490:three_prime_UTR 40.0%
TTCATTTGGTTATTGGGAGG+GGG + chr1_1:51835307-51835326 Msa0027490:three_prime_UTR 40.0%
TGTAAGCTAGGGAGAGAAAG+AGG - chr1_1:51831583-51831602 None:intergenic 45.0%
GGATAAAATCGAAAGCCAGG+GGG - chr1_1:51831645-51831664 None:intergenic 45.0%
! GGGGTTTTGCAGTTACGTTA+CGG + chr1_1:51832148-51832167 Msa0027490:intron 45.0%
ACCAATAGGGCAACAACATC+TGG + chr1_1:51833711-51833730 Msa0027490:CDS 45.0%
CCAATAGGGCAACAACATCT+GGG + chr1_1:51833712-51833731 Msa0027490:CDS 45.0%
!! TCTGGGTATTGGAAAGCAAC+AGG + chr1_1:51833729-51833748 Msa0027490:CDS 45.0%
AGCAACAGGAAAGGATCGAA+CGG + chr1_1:51833743-51833762 Msa0027490:CDS 45.0%
CCTACAACCTCATGTGTGAT+TGG - chr1_1:51833777-51833796 None:intergenic 45.0%
CCAATCACACATGAGGTTGT+AGG + chr1_1:51833774-51833793 Msa0027490:CDS 45.0%
CACATGAGGTTGTAGGAATG+AGG + chr1_1:51833781-51833800 Msa0027490:CDS 45.0%
TACCTTAGGTGGCATATGTG+GGG - chr1_1:51833886-51833905 None:intergenic 45.0%
GTACCTTAGGTGGCATATGT+GGG - chr1_1:51833887-51833906 None:intergenic 45.0%
! GATGAAGCCTATGGTTTGTG+AGG + chr1_1:51834037-51834056 Msa0027490:intron 45.0%
GAGAAAGTTGGAGGAGTGAT+TGG + chr1_1:51834473-51834492 Msa0027490:intron 45.0%
!! TGGTTTGGTTGGTTAGGGAT+GGG - chr1_1:51834825-51834844 None:intergenic 45.0%
!! ATGGTTTGGTTGGTTAGGGA+TGG - chr1_1:51834826-51834845 None:intergenic 45.0%
!! TGGCATGGTTTGGTTGGTTA+GGG - chr1_1:51834830-51834849 None:intergenic 45.0%
!! TTGGCATGGTTTGGTTGGTT+AGG - chr1_1:51834831-51834850 None:intergenic 45.0%
ACCAACCAAACCATGCCAAT+TGG + chr1_1:51834832-51834851 Msa0027490:CDS 45.0%
CCAACCAAACCATGCCAATT+GGG + chr1_1:51834833-51834852 Msa0027490:CDS 45.0%
TGTACCCAATTGGCATGGTT+TGG - chr1_1:51834840-51834859 None:intergenic 45.0%
TTGGTTGTACCCAATTGGCA+TGG - chr1_1:51834845-51834864 None:intergenic 45.0%
! GGAAGATCATCATGATGGTG+TGG + chr1_1:51835041-51835060 Msa0027490:CDS 45.0%
CATTCCTTCCATGTCTGATG+AGG - chr1_1:51835067-51835086 None:intergenic 45.0%
CATGGAAGGAATGAGATTCG+AGG + chr1_1:51835074-51835093 Msa0027490:CDS 45.0%
!! GGATGTTCTCAAGGGTACCT+TGG + chr1_1:51831716-51831735 Msa0027490:CDS 50.0%
!! TGTTCTCAAGGGTACCTTGG+AGG + chr1_1:51831719-51831738 Msa0027490:CDS 50.0%
ACTTGCATACATGCGAGCCT+TGG + chr1_1:51831748-51831767 Msa0027490:CDS 50.0%
GCGGTTAAAACGGCTTCTCT+AGG + chr1_1:51832435-51832454 Msa0027490:intron 50.0%
CGTGACCGTAAATATGCCAC+AGG + chr1_1:51833681-51833700 Msa0027490:CDS 50.0%
CCCAGATGTTGTTGCCCTAT+TGG - chr1_1:51833715-51833734 None:intergenic 50.0%
GGGCAACAACATCTGGGTAT+TGG + chr1_1:51833718-51833737 Msa0027490:CDS 50.0%
CGTACCTTAGGTGGCATATG+TGG - chr1_1:51833888-51833907 None:intergenic 50.0%
! AGGGAGTGTGATGAAGCCTA+TGG + chr1_1:51834028-51834047 Msa0027490:intron 50.0%
! GGTTTGGTTGGTTAGGGATG+GGG - chr1_1:51834824-51834843 None:intergenic 50.0%
!! CCCAATTGGCATGGTTTGGT+TGG - chr1_1:51834836-51834855 None:intergenic 50.0%
GACCCCACATATGCCACCTA+AGG + chr1_1:51833881-51833900 Msa0027490:CDS 55.0%
TGGTGTGGCCTCATCAGACA+TGG + chr1_1:51835056-51835075 Msa0027490:CDS 55.0%
GTGGCCTCATCAGACATGGA+AGG + chr1_1:51835060-51835079 Msa0027490:CDS 55.0%
GGCATGCCACGTGCATGATT+GGG + chr1_1:51835231-51835250 Msa0027490:three_prime_UTR 55.0%
TGCGAGCCTTGGCAACTTCC+TGG + chr1_1:51831759-51831778 Msa0027490:CDS 60.0%
GGGCATGCCACGTGCATGAT+TGG + chr1_1:51835230-51835249 Msa0027490:three_prime_UTR 60.0%
! GTCGGTGCTTCACTTCCCCC+TGG + chr1_1:51831627-51831646 Msa0027490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51831461 51835397 51831461 ID=Msa0027490;Name=Msa0027490
chr1_1 mRNA 51831461 51835397 51831461 ID=Msa0027490-mRNA-1;Parent=Msa0027490;Name=Msa0027490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=151|1|1|1|1|1|3|272|275
chr1_1 exon 51831461 51831780 51831461 ID=Msa0027490-mRNA-1:exon:15232;Parent=Msa0027490-mRNA-1
chr1_1 exon 51833637 51833902 51833637 ID=Msa0027490-mRNA-1:exon:15233;Parent=Msa0027490-mRNA-1
chr1_1 exon 51834733 51835397 51834733 ID=Msa0027490-mRNA-1:exon:15234;Parent=Msa0027490-mRNA-1
chr1_1 five_prime_UTR 51831461 51831611 51831461 ID=Msa0027490-mRNA-1:five_prime_utr;Parent=Msa0027490-mRNA-1
chr1_1 CDS 51831612 51831780 51831612 ID=Msa0027490-mRNA-1:cds;Parent=Msa0027490-mRNA-1
chr1_1 CDS 51833637 51833902 51833637 ID=Msa0027490-mRNA-1:cds;Parent=Msa0027490-mRNA-1
chr1_1 CDS 51834733 51835125 51834733 ID=Msa0027490-mRNA-1:cds;Parent=Msa0027490-mRNA-1
chr1_1 three_prime_UTR 51835126 51835397 51835126 ID=Msa0027490-mRNA-1:three_prime_utr;Parent=Msa0027490-mRNA-1
Gene Sequence

>Msa0027490

ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTATCCTAGTGATGAAGAATTGGTCCTTCATTACCTTTACAAAAAAATCACAAATGAGGATGTTCTCAAGGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAACTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCCACAGGTTTTAGAACCAATAGGGCAACAACATCTGGGTATTGGAAAGCAACAGGAAAGGATCGAACGGTGTTTGATCCAATCACACATGAGGTTGTAGGAATGAGGAAAACTCTAGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAGACAGAAAATAATGCCAAATTAAGTCCACAAGAAATGTATGAGACTATAGCCCCATCCCTAACCAACCAAACCATGCCAATTGGGTACAACCAATTTGCTTCTTTCTCATCTTCAATGACAACCCACCATTGTCATTTAAATGAGAACCAAAATAATTCTTTGATGAATCTTCTTCAATTTTCTAAGGAAACAAACAACAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGATATGGGTTTTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCAGACATGGAAGGAATGAGATTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA
Protein sequence

>Msa0027490

MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQEMYETIAPSLTNQTMPIGYNQFASFSSSMTTHHCHLNENQNNSLMNLLQFSKETNNNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVASSDMEGMRFEVDNNSMVLL*