AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165400 MtrunA17_Chr1g0183741 98.909 275 3 0 1 275 1 275 0.0 579
Msa0165400 MtrunA17_Chr7g0261411 76.109 293 50 7 1 275 1 291 4.91e-152 426
Msa0165400 MtrunA17_Chr2g0312321 46.914 243 111 5 6 234 7 245 2.00e-67 211
Msa0165400 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 4.17e-61 197
Msa0165400 MtrunA17_Chr3g0139331 43.333 240 110 5 9 234 10 237 1.63e-59 192
Msa0165400 MtrunA17_Chr4g0060931 48.691 191 82 4 10 186 17 205 5.67e-59 191
Msa0165400 MtrunA17_Chr1g0147421 53.797 158 70 2 2 156 19 176 1.38e-58 190
Msa0165400 MtrunA17_Chr4g0018391 45.813 203 91 5 8 194 5 204 1.97e-57 187
Msa0165400 MtrunA17_Chr3g0091921 49.733 187 78 5 10 182 16 200 9.99e-57 184
Msa0165400 MtrunA17_Chr5g0405211 48.205 195 89 5 8 192 6 198 1.93e-56 184
Msa0165400 MtrunA17_Chr6g0484441 56.376 149 61 2 10 156 5 151 2.41e-56 184
Msa0165400 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.24e-56 185
Msa0165400 MtrunA17_Chr7g0253011 54.375 160 65 3 5 156 12 171 1.24e-55 183
Msa0165400 MtrunA17_Chr6g0453451 37.241 290 153 7 4 273 10 290 2.56e-55 181
Msa0165400 MtrunA17_Chr8g0372121 46.774 186 89 5 8 185 4 187 3.21e-55 180
Msa0165400 MtrunA17_Chr2g0318101 40.408 245 124 5 10 233 15 258 1.28e-54 180
Msa0165400 MtrunA17_Chr5g0398971 53.595 153 64 3 10 156 7 158 1.46e-54 180
Msa0165400 MtrunA17_Chr4g0017921 54.902 153 63 3 8 156 6 156 5.50e-54 178
Msa0165400 MtrunA17_Chr4g0056541 52.229 157 68 3 8 159 5 159 1.20e-53 178
Msa0165400 MtrunA17_Chr7g0252971 42.857 203 89 3 10 185 8 210 7.73e-53 175
Msa0165400 MtrunA17_Chr6g0481091 41.860 215 115 4 8 216 4 214 1.51e-52 171
Msa0165400 MtrunA17_Chr7g0217721 39.370 254 107 6 13 221 22 273 3.05e-52 174
Msa0165400 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 3.16e-52 176
Msa0165400 MtrunA17_Chr2g0309891 54.194 155 62 3 9 156 5 157 4.98e-52 173
Msa0165400 MtrunA17_Chr1g0200561 52.229 157 68 4 5 156 14 168 6.55e-52 173
Msa0165400 MtrunA17_Chr4g0047841 45.810 179 70 2 10 161 15 193 2.05e-51 171
Msa0165400 MtrunA17_Chr7g0214071 48.235 170 81 3 10 177 15 179 1.02e-50 167
Msa0165400 MtrunA17_Chr3g0109821 43.868 212 85 5 8 212 4 188 2.63e-50 175
Msa0165400 MtrunA17_Chr2g0309331 43.842 203 100 6 9 206 9 202 5.00e-50 168
Msa0165400 MtrunA17_Chr8g0384721 50.625 160 67 3 10 160 7 163 8.72e-50 166
Msa0165400 MtrunA17_Chr3g0124761 51.899 158 64 3 10 159 7 160 9.15e-50 166
Msa0165400 MtrunA17_Chr5g0417791 47.097 155 72 2 10 156 3 155 1.66e-49 164
Msa0165400 MtrunA17_Chr4g0042561 46.061 165 76 4 6 159 5 167 2.71e-49 164
Msa0165400 MtrunA17_Chr2g0326361 49.045 157 72 2 9 157 13 169 8.14e-49 164
Msa0165400 MtrunA17_Chr5g0433781 54.140 157 60 4 8 156 4 156 1.03e-48 171
Msa0165400 MtrunA17_Chr3g0130731 50.625 160 66 4 10 160 7 162 1.59e-48 162
Msa0165400 MtrunA17_Chr7g0263931 47.742 155 73 1 10 156 11 165 2.66e-47 160
Msa0165400 MtrunA17_Chr8g0346001 44.848 165 73 3 8 156 13 175 8.76e-47 162
Msa0165400 MtrunA17_Chr7g0217711 53.968 126 56 1 13 138 22 145 9.02e-47 154
Msa0165400 MtrunA17_Chr5g0400461 49.398 166 76 4 7 164 3 168 1.15e-46 159
Msa0165400 MtrunA17_Chr2g0318081 49.398 166 70 4 1 156 3 164 1.45e-46 159
Msa0165400 MtrunA17_Chr8g0361731 37.118 229 126 3 12 222 16 244 1.39e-45 157
Msa0165400 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 4.94e-45 154
Msa0165400 MtrunA17_Chr5g0417001 36.697 218 118 4 12 211 16 231 7.11e-44 153
Msa0165400 MtrunA17_Chr4g0054791 39.241 237 116 7 7 234 3 220 3.01e-43 149
Msa0165400 MtrunA17_Chr1g0197351 47.531 162 67 4 9 156 41 198 1.31e-42 151
Msa0165400 MtrunA17_Chr6g0453131 43.125 160 77 3 10 156 15 173 2.80e-42 149
Msa0165400 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 9.32e-41 144
Msa0165400 MtrunA17_Chr3g0092671 49.007 151 69 4 12 156 7 155 1.11e-40 147
Msa0165400 MtrunA17_Chr1g0197361 44.751 181 91 6 12 185 10 188 2.41e-40 147
Msa0165400 MtrunA17_Chr4g0076731 41.176 204 101 5 12 212 56 243 5.25e-40 144
Msa0165400 MtrunA17_Chr5g0428991 49.020 153 70 3 10 156 25 175 1.25e-39 145
Msa0165400 MtrunA17_Chr3g0128151 42.632 190 85 5 9 176 21 208 1.95e-39 144
Msa0165400 MtrunA17_Chr3g0128111 46.667 150 72 3 13 156 45 192 2.18e-39 137
Msa0165400 MtrunA17_Chr2g0311651 37.727 220 114 7 12 208 24 243 4.94e-39 138
Msa0165400 MtrunA17_Chr5g0442771 41.463 164 72 3 12 156 20 178 5.42e-39 138
Msa0165400 MtrunA17_Chr8g0364791 34.568 243 137 6 10 234 6 244 7.84e-39 140
Msa0165400 MtrunA17_Chr2g0311661 35.841 226 116 6 12 210 23 246 4.67e-38 135
Msa0165400 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 1.01e-36 132
Msa0165400 MtrunA17_Chr1g0201021 45.033 151 75 3 12 156 21 169 2.26e-36 136
Msa0165400 MtrunA17_Chr8g0345671 46.939 147 73 4 10 153 11 155 3.81e-36 132
Msa0165400 MtrunA17_Chr8g0385991 40.000 160 85 3 3 153 7 164 7.90e-36 127
Msa0165400 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.26e-34 130
Msa0165400 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.69e-34 129
Msa0165400 MtrunA17_Chr3g0131911 41.463 164 82 3 8 159 12 173 2.82e-34 124
Msa0165400 MtrunA17_Chr3g0113001 46.667 135 61 4 58 183 13 145 5.22e-34 125
Msa0165400 MtrunA17_Chr2g0321631 42.405 158 75 6 11 154 5 160 1.30e-32 120
Msa0165400 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 1.38e-31 117
Msa0165400 MtrunA17_Chr4g0050701 36.364 165 85 3 10 163 11 166 5.42e-31 114
Msa0165400 MtrunA17_Chr7g0266701 36.585 164 88 6 10 158 4 166 1.86e-29 112
Msa0165400 MtrunA17_Chr8g0345711 42.636 129 70 3 10 135 12 139 8.14e-28 105
Msa0165400 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 1.83e-27 105
Msa0165400 MtrunA17_Chr3g0113031 38.068 176 77 6 73 221 3 173 2.15e-26 104
Msa0165400 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.45e-26 101
Msa0165400 MtrunA17_Chr7g0243371 53.750 80 37 0 65 144 19 98 6.03e-25 96.3
Msa0165400 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.16e-24 97.1
Msa0165400 MtrunA17_Chr2g0321741 41.600 125 67 4 30 153 12 131 1.56e-23 98.2
Msa0165400 MtrunA17_Chr8g0345741 36.496 137 78 4 21 154 2 132 6.43e-23 92.0
Msa0165400 MtrunA17_Chr8g0384351 37.748 151 76 5 8 158 8 140 9.85e-22 89.7
Msa0165400 MtrunA17_Chr3g0130321 28.814 177 99 5 8 169 5 169 4.63e-17 77.8
Msa0165400 MtrunA17_Chr7g0251651 33.333 135 84 4 7 139 15 145 4.79e-17 77.4
Msa0165400 MtrunA17_Chr7g0251671 34.211 152 84 5 1 145 1 143 8.22e-17 75.9
Msa0165400 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 3.08e-16 74.3
Msa0165400 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 1.34e-12 62.0
Msa0165400 MtrunA17_Chr2g0324961 28.313 166 96 6 9 156 48 208 3.93e-11 62.4
Msa0165400 MtrunA17_Chr3g0113041 51.163 43 21 0 14 56 23 65 7.88e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165400 AT4G28530.1 72.414 174 32 2 1 158 1 174 2.35e-89 269
Msa0165400 AT1G76420.1 57.500 160 65 1 9 165 21 180 1.36e-62 200
Msa0165400 AT1G56010.2 43.011 279 137 8 6 274 15 281 1.58e-61 197
Msa0165400 AT2G24430.2 56.291 151 63 1 9 156 15 165 3.22e-61 196
Msa0165400 AT2G24430.1 56.291 151 63 1 9 156 15 165 3.22e-61 196
Msa0165400 AT5G53950.1 50.276 181 84 1 10 184 17 197 1.04e-59 194
Msa0165400 AT2G18060.3 50.265 189 83 6 8 187 7 193 1.28e-59 194
Msa0165400 AT2G18060.1 50.265 189 83 6 8 187 7 193 1.28e-59 194
Msa0165400 AT5G07680.2 57.516 153 57 3 10 156 3 153 1.23e-58 189
Msa0165400 AT3G12977.1 56.410 156 61 3 6 156 14 167 1.26e-58 188
Msa0165400 AT3G18400.1 43.644 236 101 6 10 215 5 238 2.03e-58 189
Msa0165400 AT5G07680.1 56.329 158 61 3 5 156 12 167 2.03e-58 189
Msa0165400 AT4G36160.2 47.917 192 89 5 5 187 9 198 3.46e-58 190
Msa0165400 AT4G36160.1 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0165400 AT4G36160.3 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0165400 AT5G61430.1 56.863 153 58 3 10 156 16 166 4.83e-58 189
Msa0165400 AT5G39610.1 56.209 153 59 3 10 156 20 170 3.07e-56 182
Msa0165400 AT1G12260.2 53.947 152 63 3 10 156 7 156 5.68e-56 183
Msa0165400 AT1G12260.1 53.947 152 63 3 10 156 7 156 8.63e-56 184
Msa0165400 AT5G18270.1 53.892 167 66 4 10 170 21 182 1.24e-55 182
Msa0165400 AT5G18270.2 53.892 167 66 4 10 170 21 182 1.56e-55 182
Msa0165400 AT3G15170.1 52.667 150 65 1 10 153 20 169 2.83e-55 181
Msa0165400 AT1G62700.1 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0165400 AT1G62700.2 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0165400 AT4G28530.2 53.448 174 28 3 1 158 1 137 7.50e-55 180
Msa0165400 AT5G66300.1 53.086 162 68 4 4 159 6 165 1.25e-54 179
Msa0165400 AT3G04070.2 48.235 170 74 2 1 156 1 170 3.25e-54 179
Msa0165400 AT3G29035.1 55.263 152 60 2 10 155 24 173 5.39e-54 177
Msa0165400 AT3G04060.1 55.556 153 61 3 10 156 20 171 1.05e-53 177
Msa0165400 AT1G33280.1 39.510 286 141 10 8 271 6 281 1.77e-53 176
Msa0165400 AT4G10350.1 54.487 156 62 4 8 156 7 160 6.69e-53 176
Msa0165400 AT1G01720.1 40.870 230 118 5 10 224 7 233 2.67e-52 172
Msa0165400 AT1G71930.2 52.597 154 66 3 8 156 7 158 5.19e-52 173
Msa0165400 AT1G71930.1 52.597 154 66 3 8 156 7 158 5.19e-52 173
Msa0165400 AT3G04070.1 44.086 186 74 2 1 156 1 186 9.69e-52 173
Msa0165400 AT5G62380.2 47.059 187 88 5 8 186 5 188 1.07e-51 172
Msa0165400 AT5G62380.1 47.059 187 88 5 8 186 5 188 1.07e-51 172
Msa0165400 AT3G17730.1 46.703 182 87 4 8 183 4 181 3.16e-51 168
Msa0165400 AT1G61110.1 48.603 179 72 4 1 160 4 181 3.30e-51 171
Msa0165400 AT3G03200.1 43.902 205 100 5 8 203 4 202 4.33e-51 174
Msa0165400 AT5G17260.1 48.256 172 80 3 8 172 4 173 4.69e-51 174
Msa0165400 AT1G54330.1 56.291 151 61 3 9 156 5 153 8.67e-51 169
Msa0165400 AT1G65910.1 52.795 161 66 4 8 161 4 161 9.73e-49 171
Msa0165400 AT1G79580.3 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0165400 AT1G79580.5 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0165400 AT1G79580.4 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0165400 AT1G79580.2 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0165400 AT1G79580.1 51.316 152 69 3 9 156 16 166 1.13e-48 165
Msa0165400 AT3G61910.1 43.147 197 87 5 8 183 9 201 1.26e-48 164
Msa0165400 AT5G08790.1 49.057 159 69 2 10 159 7 162 6.80e-48 161
Msa0165400 AT3G15500.1 49.390 164 73 3 1 156 1 162 9.82e-48 161
Msa0165400 AT1G52890.1 51.316 152 68 2 9 156 13 162 1.34e-47 161
Msa0165400 AT4G27410.2 46.286 175 84 4 1 167 1 173 1.81e-47 160
Msa0165400 AT2G46770.1 43.787 169 73 3 8 156 14 180 2.41e-47 162
Msa0165400 AT1G77450.1 49.057 159 69 3 7 156 5 160 2.63e-47 158
Msa0165400 AT5G63790.1 48.750 160 70 2 9 159 49 205 2.75e-47 160
Msa0165400 AT3G15510.1 38.426 216 103 4 14 209 21 226 2.82e-47 161
Msa0165400 AT1G32770.1 37.900 219 110 5 8 202 14 230 3.24e-47 161
Msa0165400 AT5G63790.2 48.750 160 70 2 9 159 59 215 3.53e-47 160
Msa0165400 AT1G69490.1 45.860 157 75 2 8 156 7 161 6.22e-47 158
Msa0165400 AT3G10480.1 50.318 157 69 3 7 156 24 178 3.14e-46 160
Msa0165400 AT3G10490.1 48.148 162 75 3 2 156 19 178 3.78e-46 155
Msa0165400 AT1G33060.2 52.597 154 65 3 9 156 23 174 3.81e-46 164
Msa0165400 AT1G33060.1 52.597 154 65 3 9 156 23 174 3.82e-46 164
Msa0165400 AT5G46590.1 36.546 249 125 7 8 236 4 239 4.43e-46 156
Msa0165400 AT5G04410.1 49.045 157 72 3 9 159 8 162 4.53e-46 162
Msa0165400 AT4G17980.1 37.903 248 132 5 8 242 4 242 1.59e-45 154
Msa0165400 AT5G13180.1 47.742 155 75 2 10 161 14 165 1.78e-45 154
Msa0165400 AT4G35580.1 53.247 154 64 3 9 156 8 159 2.26e-45 160
Msa0165400 AT4G35580.2 53.247 154 64 3 9 156 8 159 3.24e-45 160
Msa0165400 AT4G35580.3 53.247 154 64 3 9 156 8 159 3.26e-45 160
Msa0165400 AT3G10480.2 51.282 156 68 4 7 156 24 177 4.06e-45 158
Msa0165400 AT4G17980.2 37.903 248 132 5 8 242 4 242 5.08e-45 154
Msa0165400 AT3G10490.2 48.148 162 75 3 2 156 19 178 6.97e-45 157
Msa0165400 AT1G32510.1 38.723 235 118 7 6 225 2 225 1.78e-44 152
Msa0165400 AT5G39820.1 37.566 189 92 2 12 174 22 210 3.01e-44 153
Msa0165400 AT3G10500.1 48.052 154 72 3 9 156 8 159 1.75e-43 155
Msa0165400 AT1G26870.1 34.008 247 128 4 10 234 16 249 3.14e-43 152
Msa0165400 AT5G46590.2 51.515 132 61 2 8 137 4 134 3.23e-43 149
Msa0165400 AT4G27410.3 42.188 192 84 5 1 167 1 190 4.11e-43 149
Msa0165400 AT2G33480.2 46.795 156 76 3 10 163 15 165 7.89e-43 147
Msa0165400 AT2G33480.1 46.203 158 76 3 10 163 15 167 1.33e-42 147
Msa0165400 AT1G56010.1 38.596 228 115 5 58 274 1 214 1.50e-42 146
Msa0165400 AT5G24590.2 43.407 182 96 3 8 183 11 191 2.79e-42 150
Msa0165400 AT2G43000.1 42.593 162 84 3 12 167 20 178 2.99e-42 146
Msa0165400 AT3G10480.3 41.579 190 69 3 7 156 24 211 2.46e-40 146
Msa0165400 AT3G49530.2 45.455 154 77 3 9 156 12 164 4.40e-40 144
Msa0165400 AT3G49530.1 45.455 154 77 3 9 156 12 164 7.22e-40 144
Msa0165400 AT3G12977.2 60.748 107 35 3 55 156 10 114 8.83e-40 138
Msa0165400 AT2G02450.1 44.304 158 81 3 12 165 53 207 9.84e-40 142
Msa0165400 AT2G02450.2 44.304 158 81 3 12 165 53 207 1.26e-39 142
Msa0165400 AT1G52880.1 45.342 161 72 3 14 159 21 180 2.20e-39 140
Msa0165400 AT2G27300.1 44.898 147 75 3 8 153 12 153 7.54e-38 136
Msa0165400 AT5G09330.5 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0165400 AT5G09330.2 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0165400 AT5G09330.4 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0165400 AT5G09330.3 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0165400 AT5G09330.1 43.791 153 78 3 10 156 6 156 7.93e-37 136
Msa0165400 AT2G17040.1 42.857 147 82 2 12 157 8 153 1.01e-36 132
Msa0165400 AT5G61430.2 59.048 105 35 3 58 156 1 103 1.56e-36 131
Msa0165400 AT1G34180.3 40.764 157 85 3 6 156 12 166 2.82e-36 134
Msa0165400 AT1G34190.1 41.722 151 80 3 12 156 18 166 8.70e-36 134
Msa0165400 AT1G34180.1 41.722 151 80 3 12 156 18 166 1.06e-35 134
Msa0165400 AT3G12910.1 36.087 230 123 7 12 220 23 249 4.22e-35 128
Msa0165400 AT4G10350.2 57.798 109 37 4 55 156 7 113 1.68e-34 126
Msa0165400 AT1G34180.4 37.870 169 85 3 6 156 12 178 3.27e-34 129
Msa0165400 AT1G34180.2 38.650 163 80 3 12 156 18 178 9.86e-34 129
Msa0165400 AT5G64060.1 39.610 154 85 3 9 156 5 156 2.05e-33 125
Msa0165400 AT1G32870.2 43.902 164 80 4 1 156 1 160 3.40e-33 127
Msa0165400 AT1G32870.1 43.902 164 80 4 1 156 1 160 4.08e-33 127
Msa0165400 AT1G32870.3 43.902 164 80 4 1 156 37 196 7.29e-33 126
Msa0165400 AT5G04395.1 42.384 151 73 2 1 137 19 169 1.99e-32 118
Msa0165400 AT5G22290.1 33.663 202 118 6 4 193 10 207 1.13e-31 120
Msa0165400 AT3G44290.2 39.860 143 80 3 12 153 16 153 1.00e-30 115
Msa0165400 AT3G44290.1 39.860 143 80 3 12 153 16 153 3.86e-30 115
Msa0165400 AT3G44350.2 35.814 215 116 8 6 206 1 207 6.24e-30 113
Msa0165400 AT4G01550.1 38.667 150 87 4 13 158 7 155 8.45e-29 114
Msa0165400 AT5G64530.1 32.941 170 84 3 9 160 2 159 1.32e-27 105
Msa0165400 AT3G44350.1 41.912 136 73 3 6 136 1 135 2.77e-27 103
Msa0165400 AT2G18060.2 49.057 106 46 5 88 187 2 105 5.96e-27 106
Msa0165400 AT5G22380.1 35.260 173 99 5 13 173 8 179 2.15e-26 103
Msa0165400 AT2G33480.3 48.077 104 48 2 64 163 9 110 2.58e-26 102
Msa0165400 AT4G01520.1 36.129 155 91 6 11 159 5 157 8.22e-26 103
Msa0165400 AT5G64530.2 37.500 128 68 2 10 137 3 118 2.96e-25 98.6
Msa0165400 AT1G02230.1 37.908 153 87 5 11 158 4 153 5.41e-25 102
Msa0165400 AT4G01540.3 35.948 153 90 6 13 159 7 157 1.17e-24 102
Msa0165400 AT4G01540.1 35.948 153 90 6 13 159 7 157 1.55e-24 102
Msa0165400 AT4G01540.4 35.948 153 90 6 13 159 7 157 1.63e-24 101
Msa0165400 AT4G01540.2 35.948 153 90 6 13 159 7 157 1.68e-24 102
Msa0165400 AT3G04420.2 33.775 151 93 4 11 157 4 151 2.26e-23 97.1
Msa0165400 AT3G04420.1 33.775 151 93 4 11 157 4 151 4.43e-23 97.1
Msa0165400 AT1G01010.1 30.568 229 130 9 13 219 6 227 7.76e-21 91.7
Msa0165400 AT3G10490.4 53.165 79 30 2 83 156 2 78 2.60e-19 86.7
Msa0165400 AT3G10490.3 53.165 79 30 2 83 156 2 78 2.60e-19 86.7
Msa0165400 AT2G43000.2 39.640 111 58 3 71 175 1 108 3.69e-19 83.6
Msa0165400 AT1G02250.1 32.680 153 95 4 11 158 4 153 2.31e-18 84.0
Msa0165400 AT1G02220.1 31.126 151 94 5 11 157 4 148 8.03e-18 82.8
Msa0165400 AT3G04430.1 36.957 138 73 5 16 141 6 141 3.30e-17 78.2
Msa0165400 AT5G50820.1 37.226 137 62 6 10 137 17 138 3.76e-16 75.1
Msa0165400 AT3G56530.1 27.815 151 102 4 9 154 51 199 6.35e-16 76.6
Msa0165400 AT5G14000.2 31.579 133 85 3 7 137 12 140 5.11e-14 68.6
Msa0165400 AT3G55210.1 26.994 163 103 4 6 154 7 167 2.75e-13 68.9
Msa0165400 AT5G14000.1 31.579 133 85 3 7 137 12 140 2.85e-13 67.8
Msa0165400 AT1G28470.1 28.814 177 105 6 9 168 76 248 2.45e-12 66.2
Msa0165400 AT5G22290.2 34.234 111 63 4 89 193 2 108 9.52e-12 63.9

Find 103 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCTTGTGGACTTAATT+TGG 0.161042 1_4:-45886350 None:intergenic
TTGGATAGGTAGTGGGTTTA+TGG 0.178084 1_4:-45883103 None:intergenic
GATTCATCAAAGAATTATTT+TGG 0.212245 1_4:-45886483 None:intergenic
TAGGGTTTCATTTGGTTATT+GGG 0.220851 1_4:+45886866 Msa0165400:three_prime_UTR
TATATAGTGTTTGGCTTCAT+AGG 0.225282 1_4:+45886774 Msa0165400:three_prime_UTR
TTAGGGTTTCATTTGGTTAT+TGG 0.232819 1_4:+45886865 Msa0165400:three_prime_UTR
CCCAGATGTTGTTGCCCTAT+TGG 0.241618 1_4:-45885277 None:intergenic
TTGGCATGGTTTGGTTGGTT+AGG 0.262175 1_4:-45886393 None:intergenic
CCATATCCATCATCACATTT+AGG 0.299554 1_4:-45886562 None:intergenic
ACGTGCATGATTGGGATTAT+AGG 0.305437 1_4:+45886804 Msa0165400:three_prime_UTR
ACCAATAGGGCAACAACATC+TGG 0.310609 1_4:+45885276 Msa0165400:CDS
CCTAAATGTGATGATGGATA+TGG 0.311726 1_4:+45886562 Msa0165400:CDS
AGTGTTCAGTGTGATTGGTT+AGG 0.323517 1_4:+45886847 Msa0165400:three_prime_UTR
TAAAACCTGTGGCATATTTA+CGG 0.326045 1_4:-45885251 None:intergenic
AAGATGAGAAAGAAGCAAAT+TGG 0.341217 1_4:-45886426 None:intergenic
TGCGAGCCTTGGCAACTTCC+TGG 0.343644 1_4:+45883324 Msa0165400:CDS
GTTGGATCATGCATGAGTTT+AGG 0.344473 1_4:+45885418 Msa0165400:CDS
TTTCATTTGGTTATTGGGAG+GGG 0.344683 1_4:+45886871 Msa0165400:three_prime_UTR
GGGCATGCCACGTGCATGAT+TGG 0.350732 1_4:+45886795 Msa0165400:three_prime_UTR
TGGCATGGTTTGGTTGGTTA+GGG 0.355057 1_4:-45886392 None:intergenic
TTCATTTGGTTATTGGGAGG+GGG 0.361369 1_4:+45886872 Msa0165400:three_prime_UTR
GTGTTCAGTGTGATTGGTTA+GGG 0.362556 1_4:+45886848 Msa0165400:three_prime_UTR
TTATCCTAGTGATGAAGAAT+TGG 0.381724 1_4:+45883224 Msa0165400:CDS
CACATTGATTAGCATTTGTA+GGG 0.386550 1_4:+45886900 Msa0165400:three_prime_UTR
ACCAACCAAACCATGCCAAT+TGG 0.386891 1_4:+45886397 Msa0165400:CDS
AGTGGGTTTATGGATATATA+TGG 0.387627 1_4:-45883093 None:intergenic
GTGTACATATATTATGTATA+TGG 0.388159 1_4:+45886704 Msa0165400:three_prime_UTR
TTTCAAGTGTTCAGTGTGAT+TGG 0.389446 1_4:+45886842 Msa0165400:three_prime_UTR
TGGTTTGGTTGGTTAGGGAT+GGG 0.392064 1_4:-45886387 None:intergenic
GGTTTGGTTGGTTAGGGATG+GGG 0.395087 1_4:-45886386 None:intergenic
GGAAAACTCTAGTGTTCTAT+AGG 0.402144 1_4:+45885367 Msa0165400:CDS
ATGGTTTGGTTGGTTAGGGA+TGG 0.404562 1_4:-45886388 None:intergenic
CGTACCTTAGGTGGCATATG+TGG 0.408299 1_4:-45885450 None:intergenic
TGATTGGTTAGGGTTTCATT+TGG 0.414632 1_4:+45886858 Msa0165400:three_prime_UTR
CCAACCAAACCATGCCAATT+GGG 0.419454 1_4:+45886398 Msa0165400:CDS
CCTACAACCTCATGTGTGAT+TGG 0.419579 1_4:-45885339 None:intergenic
ACACATTGATTAGCATTTGT+AGG 0.419765 1_4:+45886899 Msa0165400:three_prime_UTR
GCTCCAAATGGAATCAAAAC+AGG 0.425014 1_4:+45885396 Msa0165400:CDS
TGTACCCAATTGGCATGGTT+TGG 0.430448 1_4:-45886402 None:intergenic
TGTAAGCTAGGGAGAGAAAG+AGG 0.432554 1_4:-45883145 None:intergenic
TTGTGTAGAGTATTTCATAA+AGG 0.437100 1_4:+45886310 Msa0165400:CDS
GTTTCATTTGGTTATTGGGA+GGG 0.437465 1_4:+45886870 Msa0165400:three_prime_UTR
GGGCAACAACATCTGGGTAT+TGG 0.439791 1_4:+45885283 Msa0165400:CDS
GCAAATTGGTTGTACCCAAT+TGG 0.440675 1_4:-45886412 None:intergenic
TTTGTTGATTACAGGAAGAC+TGG 0.444436 1_4:+45886284 Msa0165400:intron
CTAGCTTACAAAATTAATCA+TGG 0.444500 1_4:+45883158 Msa0165400:exon
GGTTTCATTTGGTTATTGGG+AGG 0.448742 1_4:+45886869 Msa0165400:three_prime_UTR
CTCATTTAAATGACAATGGT+GGG 0.454810 1_4:-45886458 None:intergenic
GGTTCTTATCTCTCAAGTTA+CGG 0.467662 1_4:+45886725 Msa0165400:three_prime_UTR
CCAATCACACATGAGGTTGT+AGG 0.470021 1_4:+45885339 Msa0165400:CDS
TCTCAAGTTACGGAAATTTG+TGG 0.472207 1_4:+45886735 Msa0165400:three_prime_UTR
TCTGGGTATTGGAAAGCAAC+AGG 0.476335 1_4:+45885294 Msa0165400:CDS
GGCATGCCACGTGCATGATT+GGG 0.477476 1_4:+45886796 Msa0165400:three_prime_UTR
ATTAGTCCTAAATGTGATGA+TGG 0.485409 1_4:+45886556 Msa0165400:CDS
CCCAATTGGCATGGTTTGGT+TGG 0.487255 1_4:-45886398 None:intergenic
CTAGGATAAAATCGAAAGCC+AGG 0.494510 1_4:-45883210 None:intergenic
ATGTAATCATATATAGTGTT+TGG 0.501160 1_4:+45886765 Msa0165400:three_prime_UTR
CACAAATGAGGATGTTCTCA+AGG 0.510472 1_4:+45883272 Msa0165400:CDS
ATATAGTGTTTGGCTTCATA+GGG 0.512678 1_4:+45886775 Msa0165400:three_prime_UTR
CGTGACCGTAAATATGCCAC+AGG 0.515429 1_4:+45885246 Msa0165400:CDS
GATCATGCATGAGTTTAGGT+TGG 0.515996 1_4:+45885422 Msa0165400:CDS
ACTTGCATACATGCGAGCCT+TGG 0.522819 1_4:+45883313 Msa0165400:CDS
TCTCATTTAAATGACAATGG+TGG 0.533934 1_4:-45886459 None:intergenic
CTAAACTCAACGCAACTGAA+TGG 0.538893 1_4:+45885208 Msa0165400:CDS
TATAGGAATAGAGCTCCAAA+TGG 0.544085 1_4:+45885384 Msa0165400:CDS
GGATGTTCTCAAGGGTACCT+TGG 0.551085 1_4:+45883281 Msa0165400:CDS
TGTTCTCAAGGGTACCTTGG+AGG 0.553598 1_4:+45883284 Msa0165400:CDS
TAGCTTACAAAATTAATCAT+GGG 0.557425 1_4:+45883159 Msa0165400:exon
GGTTCTCATTTAAATGACAA+TGG 0.558939 1_4:-45886462 None:intergenic
CACATGAGGTTGTAGGAATG+AGG 0.561923 1_4:+45885346 Msa0165400:CDS
GTACCTTAGGTGGCATATGT+GGG 0.562749 1_4:-45885449 None:intergenic
CTAAATGTGATGATGGATAT+GGG 0.563079 1_4:+45886563 Msa0165400:CDS
TTTATGGATATATATGGTAG+AGG 0.568550 1_4:-45883087 None:intergenic
CAAATGGAATCAAAACAGGT+TGG 0.568983 1_4:+45885400 Msa0165400:CDS
ATAGTCTCATACATTTCTTG+TGG 0.571583 1_4:-45886361 None:intergenic
AGGACCAATTCTTCATCACT+AGG 0.581995 1_4:-45883228 None:intergenic
ATCATGGGTCTTAGAGATGT+CGG 0.583109 1_4:+45883174 Msa0165400:exon
TTGGTTGTACCCAATTGGCA+TGG 0.593786 1_4:-45886407 None:intergenic
TTGTTGATTACAGGAAGACT+GGG 0.594796 1_4:+45886285 Msa0165400:intron
CATGGAAGGAATGAGATTCG+AGG 0.594984 1_4:+45886639 Msa0165400:CDS
GACCCCACATATGCCACCTA+AGG 0.595376 1_4:+45885446 Msa0165400:CDS
CCAATAGGGCAACAACATCT+GGG 0.597019 1_4:+45885277 Msa0165400:CDS
TATATACCAGGAAGTTGCCA+AGG 0.602199 1_4:-45883330 None:intergenic
TAGGATAAAATCGAAAGCCA+GGG 0.604860 1_4:-45883209 None:intergenic
CATTCCTTCCATGTCTGATG+AGG 0.604861 1_4:-45886629 None:intergenic
ATGCAAGTCAATTTCCTCCA+AGG 0.605909 1_4:-45883298 None:intergenic
CCTATTGGTTCTAAAACCTG+TGG 0.612834 1_4:-45885262 None:intergenic
CGAGGTTGATAATAATAGCA+TGG 0.613330 1_4:+45886657 Msa0165400:CDS
CATTGATTAGCATTTGTAGG+GGG 0.623982 1_4:+45886902 Msa0165400:three_prime_UTR
AGCAACAGGAAAGGATCGAA+CGG 0.629108 1_4:+45885308 Msa0165400:CDS
GGATATATATGGTAGAGGTG+TGG 0.633029 1_4:-45883082 None:intergenic
TGGTGTGGCCTCATCAGACA+TGG 0.638421 1_4:+45886621 Msa0165400:CDS
TACCTTAGGTGGCATATGTG+GGG 0.640655 1_4:-45885448 None:intergenic
GTTTGATCCAATCACACATG+AGG 0.642011 1_4:+45885332 Msa0165400:CDS
GTGGCCTCATCAGACATGGA+AGG 0.645880 1_4:+45886625 Msa0165400:CDS
ACAAATGAGGATGTTCTCAA+GGG 0.646017 1_4:+45883273 Msa0165400:CDS
GTATTGGAAAGCAACAGGAA+AGG 0.658210 1_4:+45885299 Msa0165400:CDS
ACATTGATTAGCATTTGTAG+GGG 0.662335 1_4:+45886901 Msa0165400:three_prime_UTR
GATTTGGAAGATCATCATGA+TGG 0.674805 1_4:+45886601 Msa0165400:CDS
GGAAGATCATCATGATGGTG+TGG 0.675111 1_4:+45886606 Msa0165400:CDS
AGGATAAAATCGAAAGCCAG+GGG 0.675897 1_4:-45883208 None:intergenic
TATAATCCCAATCATGCACG+TGG 0.713373 1_4:-45886802 None:intergenic
GGATAAAATCGAAAGCCAGG+GGG 0.720221 1_4:-45883207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAAAATTATTTAT+TGG - chr1_4:45883814-45883833 None:intergenic 0.0%
!!! AATAATTTTTTTATATAATA+TGG + chr1_4:45883817-45883836 Msa0165400:intron 0.0%
!!! AAGATATATTTTTGAAATTT+TGG - chr1_4:45883125-45883144 None:intergenic 10.0%
!! AATAAAATAAAAGAGAAAAT+TGG + chr1_4:45883686-45883705 Msa0165400:intron 10.0%
!!! TTTTTTTTATTTTTATTCAG+AGG + chr1_4:45885182-45885201 Msa0165400:intron 10.0%
!! TTAGGTATAAATAAAAAAAT+TGG + chr1_4:45885662-45885681 Msa0165400:intron 10.0%
!!! ATATTTTTGAAATTTTGGAT+AGG - chr1_4:45883120-45883139 None:intergenic 15.0%
!! TGATAAATATAATATATACC+AGG - chr1_4:45883345-45883364 None:intergenic 15.0%
!! TTAACCATATATTAATTCTT+TGG + chr1_4:45883431-45883450 Msa0165400:intron 15.0%
!! TTAACCAAAGAATTAATATA+TGG - chr1_4:45883438-45883457 None:intergenic 15.0%
!! TCAACTCATAAATAAATATA+AGG - chr1_4:45883543-45883562 None:intergenic 15.0%
!! AAAGAAGAAGAAATAATTAA+AGG + chr1_4:45883610-45883629 Msa0165400:intron 15.0%
!! AGATCATAATAATATTGTTT+GGG - chr1_4:45883928-45883947 None:intergenic 15.0%
!!! ATTTAAAGTGTATACAAAAT+AGG + chr1_4:45884422-45884441 Msa0165400:intron 15.0%
!! AAAAAAATTATCGTTATTGA+TGG + chr1_4:45884517-45884536 Msa0165400:intron 15.0%
!! CAATAATGACAAAAATAATT+TGG - chr1_4:45884992-45885011 None:intergenic 15.0%
!!! TTATATGTGTAGTTTTTATT+AGG + chr1_4:45885644-45885663 Msa0165400:intron 15.0%
!!! TGTTTTAATGTTTTTTGAAA+TGG - chr1_4:45885872-45885891 None:intergenic 15.0%
!! TAAATCTCTTAATTAAGATT+TGG - chr1_4:45886120-45886139 None:intergenic 15.0%
!!! CTTTAAAAATCTAGTTATTT+TGG + chr1_4:45886231-45886250 Msa0165400:intron 15.0%
!!! ATGATTAATTTTGTAAGCTA+GGG - chr1_4:45883159-45883178 None:intergenic 20.0%
!! TAGCTTACAAAATTAATCAT+GGG + chr1_4:45883159-45883178 Msa0165400:exon 20.0%
!!! TTTTTTTGTAAAGGTAATGA+AGG - chr1_4:45883251-45883270 None:intergenic 20.0%
!!! CATTTGTGATTTTTTTGTAA+AGG - chr1_4:45883260-45883279 None:intergenic 20.0%
!! TTACAAAAAAATCACAAATG+AGG + chr1_4:45883260-45883279 Msa0165400:CDS 20.0%
!!! ATATTTGCCTTTTTAAAAGA+AGG + chr1_4:45883573-45883592 Msa0165400:intron 20.0%
!!! AAAGTTTCCTTCTTTTAAAA+AGG - chr1_4:45883583-45883602 None:intergenic 20.0%
!!! TTTTTAAAAGAAGGAAACTT+TGG + chr1_4:45883582-45883601 Msa0165400:intron 20.0%
!! ATAAAAGAGAAAATTGGTTA+TGG + chr1_4:45883692-45883711 Msa0165400:intron 20.0%
!! TAAAAGAGAAAATTGGTTAT+GGG + chr1_4:45883693-45883712 Msa0165400:intron 20.0%
!! ACAAAAGCAATTATGTAAAA+CGG - chr1_4:45883858-45883877 None:intergenic 20.0%
!! GAGATCATAATAATATTGTT+TGG - chr1_4:45883929-45883948 None:intergenic 20.0%
!! ATTAATCAAATGAAAGTGAA+AGG - chr1_4:45884054-45884073 None:intergenic 20.0%
!! TTATGTTACAATTTATGACA+AGG - chr1_4:45884287-45884306 None:intergenic 20.0%
!!! GTATATTTTGTAGACTTTAA+TGG - chr1_4:45884485-45884504 None:intergenic 20.0%
!!! ATTAATCAAACATTAGCTTA+TGG + chr1_4:45884679-45884698 Msa0165400:intron 20.0%
!! TAACATGAAAAATTGCTTAT+TGG - chr1_4:45884751-45884770 None:intergenic 20.0%
!!! TTTTTATTTTTATTCAGAGG+TGG + chr1_4:45885185-45885204 Msa0165400:intron 20.0%
!!! TTTTTTTAATAAACTTGACG+TGG + chr1_4:45885979-45885998 Msa0165400:intron 20.0%
!! AGAATAGAATATTTCATAAG+TGG + chr1_4:45886164-45886183 Msa0165400:intron 20.0%
!!! GATTCATCAAAGAATTATTT+TGG - chr1_4:45886486-45886505 None:intergenic 20.0%
!! GTGTACATATATTATGTATA+TGG + chr1_4:45886704-45886723 Msa0165400:three_prime_UTR 20.0%
!! ATGTAATCATATATAGTGTT+TGG + chr1_4:45886765-45886784 Msa0165400:three_prime_UTR 20.0%
! TTTATGGATATATATGGTAG+AGG - chr1_4:45883090-45883109 None:intergenic 25.0%
!! CATGATTAATTTTGTAAGCT+AGG - chr1_4:45883160-45883179 None:intergenic 25.0%
! CTAGCTTACAAAATTAATCA+TGG + chr1_4:45883158-45883177 Msa0165400:exon 25.0%
! AAAAGAGAAAATTGGTTATG+GGG + chr1_4:45883694-45883713 Msa0165400:intron 25.0%
! TTCAATGATTAAGGCTATTA+AGG + chr1_4:45883758-45883777 Msa0165400:intron 25.0%
! TCAATGATTAAGGCTATTAA+GGG + chr1_4:45883759-45883778 Msa0165400:intron 25.0%
!! TTTTCTTTATGCGGTTAAAA+CGG + chr1_4:45883990-45884009 Msa0165400:intron 25.0%
! ATATAGACTTAAATACATGC+AGG - chr1_4:45884148-45884167 None:intergenic 25.0%
!! ATCTTTCACACAAATGTTTT+GGG + chr1_4:45884206-45884225 Msa0165400:intron 25.0%
!! TCTTTTGTGAATGATAATTG+AGG + chr1_4:45884250-45884269 Msa0165400:intron 25.0%
! TTACAATTTATGACAAGGTA+TGG - chr1_4:45884282-45884301 None:intergenic 25.0%
! ATACACTATCAAAGCAAAAT+AGG + chr1_4:45884398-45884417 Msa0165400:intron 25.0%
!! ATCGTTATTGATGGTAAAAT+TGG + chr1_4:45884526-45884545 Msa0165400:intron 25.0%
!! AAACTCCTCTTTTTGTAAAT+GGG + chr1_4:45884776-45884795 Msa0165400:intron 25.0%
! ACTGAAAAATACAAAGAGAA+CGG + chr1_4:45884804-45884823 Msa0165400:intron 25.0%
! AGTAAAAATAAACGTACCTT+AGG - chr1_4:45885465-45885484 None:intergenic 25.0%
! ACGTTTGAAAATTGATTGAA+AGG - chr1_4:45885497-45885516 None:intergenic 25.0%
! ATGTAATTGCCACATAATAA+AGG + chr1_4:45885573-45885592 Msa0165400:intron 25.0%
! TGTAATTGCCACATAATAAA+GGG + chr1_4:45885574-45885593 Msa0165400:intron 25.0%
! AAGATAAAATATCTCCATCA+AGG - chr1_4:45885809-45885828 None:intergenic 25.0%
!! AGAGCTAGCTATTTAAAATA+AGG + chr1_4:45886014-45886033 Msa0165400:intron 25.0%
! TTAAAATAAGGTGAGAAAGT+TGG + chr1_4:45886026-45886045 Msa0165400:intron 25.0%
!! ATTGTTGTCATTGATTGAAT+TGG + chr1_4:45886139-45886158 Msa0165400:intron 25.0%
!! AAATGATTCTCACGTATTTT+AGG + chr1_4:45886192-45886211 Msa0165400:intron 25.0%
!!! TTCAAACTTTTGTTGATTAC+AGG + chr1_4:45886276-45886295 Msa0165400:intron 25.0%
!! TTGTGTAGAGTATTTCATAA+AGG + chr1_4:45886310-45886329 Msa0165400:CDS 25.0%
!! GAATCTTCTTCAATTTTCTA+AGG + chr1_4:45886501-45886520 Msa0165400:CDS 25.0%
! AGTGGGTTTATGGATATATA+TGG - chr1_4:45883096-45883115 None:intergenic 30.0%
! TGAAATTTTGGATAGGTAGT+GGG - chr1_4:45883113-45883132 None:intergenic 30.0%
! TTGAAATTTTGGATAGGTAG+TGG - chr1_4:45883114-45883133 None:intergenic 30.0%
TTATCCTAGTGATGAAGAAT+TGG + chr1_4:45883224-45883243 Msa0165400:CDS 30.0%
AATTGACATTCACAAACACA+TGG + chr1_4:45883456-45883475 Msa0165400:intron 30.0%
TACGGCATCATTAATTAACT+TGG + chr1_4:45883481-45883500 Msa0165400:intron 30.0%
GTTCAGTTCTTCAATGATTA+AGG + chr1_4:45883749-45883768 Msa0165400:intron 30.0%
TACAGCAGAAAAAAACAACT+AGG - chr1_4:45883898-45883917 None:intergenic 30.0%
!! TCTTCTTGCTTTTCTTTATG+CGG + chr1_4:45883981-45884000 Msa0165400:intron 30.0%
!! CTCTAGGTATTTTACTTTTG+TGG + chr1_4:45884016-45884035 Msa0165400:intron 30.0%
GTGAAAGATCAAATGTTGTA+TGG - chr1_4:45884195-45884214 None:intergenic 30.0%
! GATCTTTCACACAAATGTTT+TGG + chr1_4:45884205-45884224 Msa0165400:intron 30.0%
AGAAAGTCGTCATACAAAAT+AGG + chr1_4:45884363-45884382 Msa0165400:intron 30.0%
! CAAACTCCTCTTTTTGTAAA+TGG + chr1_4:45884775-45884794 Msa0165400:intron 30.0%
! AACTCCTCTTTTTGTAAATG+GGG + chr1_4:45884777-45884796 Msa0165400:intron 30.0%
!!! ACCTAAGCATGTTATTTTTG+GGG - chr1_4:45884869-45884888 None:intergenic 30.0%
!!! GACCTAAGCATGTTATTTTT+GGG - chr1_4:45884870-45884889 None:intergenic 30.0%
!!! TGACCTAAGCATGTTATTTT+TGG - chr1_4:45884871-45884890 None:intergenic 30.0%
!! TTTCAAGTTTCCAATTGAGA+CGG - chr1_4:45884900-45884919 None:intergenic 30.0%
TATGGAAAAACATGTGACTT+AGG - chr1_4:45885112-45885131 None:intergenic 30.0%
! AAGTCACATGTTTTTCCATA+TGG + chr1_4:45885112-45885131 Msa0165400:intron 30.0%
!!! GGTCAATTTTTAGTACCATA+TGG - chr1_4:45885130-45885149 None:intergenic 30.0%
CATGCATGAATAGAGATAAT+AGG - chr1_4:45885151-45885170 None:intergenic 30.0%
TAAAACCTGTGGCATATTTA+CGG - chr1_4:45885254-45885273 None:intergenic 30.0%
AAAAATAAACGTACCTTAGG+TGG - chr1_4:45885462-45885481 None:intergenic 30.0%
! TTTTCAAACGTGACAATGAT+AGG + chr1_4:45885506-45885525 Msa0165400:intron 30.0%
! AAGATTACAACTTGCTTCTT+AGG - chr1_4:45885691-45885710 None:intergenic 30.0%
GAACTACTATTATACCTTGA+TGG + chr1_4:45885792-45885811 Msa0165400:intron 30.0%
!!! TTAGCATCTTTTTGAGATAG+AGG + chr1_4:45886063-45886082 Msa0165400:intron 30.0%
CATTTCTTGTGGACTTAATT+TGG - chr1_4:45886353-45886372 None:intergenic 30.0%
ATAGTCTCATACATTTCTTG+TGG - chr1_4:45886364-45886383 None:intergenic 30.0%
AAGATGAGAAAGAAGCAAAT+TGG - chr1_4:45886429-45886448 None:intergenic 30.0%
CTCATTTAAATGACAATGGT+GGG - chr1_4:45886461-45886480 None:intergenic 30.0%
TCTCATTTAAATGACAATGG+TGG - chr1_4:45886462-45886481 None:intergenic 30.0%
GGTTCTCATTTAAATGACAA+TGG - chr1_4:45886465-45886484 None:intergenic 30.0%
ATTAGTCCTAAATGTGATGA+TGG + chr1_4:45886556-45886575 Msa0165400:CDS 30.0%
!! CTAAATGTGATGATGGATAT+GGG + chr1_4:45886563-45886582 Msa0165400:CDS 30.0%
! TATATAGTGTTTGGCTTCAT+AGG + chr1_4:45886774-45886793 Msa0165400:three_prime_UTR 30.0%
! ATATAGTGTTTGGCTTCATA+GGG + chr1_4:45886775-45886794 Msa0165400:three_prime_UTR 30.0%
TTAGGGTTTCATTTGGTTAT+TGG + chr1_4:45886865-45886884 Msa0165400:three_prime_UTR 30.0%
TAGGGTTTCATTTGGTTATT+GGG + chr1_4:45886866-45886885 Msa0165400:three_prime_UTR 30.0%
! ACACATTGATTAGCATTTGT+AGG + chr1_4:45886899-45886918 Msa0165400:three_prime_UTR 30.0%
! CACATTGATTAGCATTTGTA+GGG + chr1_4:45886900-45886919 Msa0165400:three_prime_UTR 30.0%
! ACATTGATTAGCATTTGTAG+GGG + chr1_4:45886901-45886920 Msa0165400:three_prime_UTR 30.0%
TAGGATAAAATCGAAAGCCA+GGG - chr1_4:45883212-45883231 None:intergenic 35.0%
ACAAATGAGGATGTTCTCAA+GGG + chr1_4:45883273-45883292 Msa0165400:CDS 35.0%
ATTCACAAACACATGGTGTA+CGG + chr1_4:45883463-45883482 Msa0165400:intron 35.0%
TGCTTTGCGAATATTCTGTA+AGG + chr1_4:45884601-45884620 Msa0165400:intron 35.0%
TTCACCCCATTTACAAAAAG+AGG - chr1_4:45884784-45884803 None:intergenic 35.0%
ACCCCAAAAATAACATGCTT+AGG + chr1_4:45884865-45884884 Msa0165400:intron 35.0%
GACTTAGGTAGGTAAAACAA+GGG - chr1_4:45885097-45885116 None:intergenic 35.0%
TGACTTAGGTAGGTAAAACA+AGG - chr1_4:45885098-45885117 None:intergenic 35.0%
GAAAAACATGTGACTTAGGT+AGG - chr1_4:45885108-45885127 None:intergenic 35.0%
!!! CACAGGTTTTAGAACCAATA+GGG + chr1_4:45885263-45885282 Msa0165400:CDS 35.0%
GGAAAACTCTAGTGTTCTAT+AGG + chr1_4:45885367-45885386 Msa0165400:CDS 35.0%
TATAGGAATAGAGCTCCAAA+TGG + chr1_4:45885384-45885403 Msa0165400:CDS 35.0%
!!! CAACCTGTTTTGATTCCATT+TGG - chr1_4:45885402-45885421 None:intergenic 35.0%
CAAATGGAATCAAAACAGGT+TGG + chr1_4:45885400-45885419 Msa0165400:CDS 35.0%
ATCACACTCCCTTTATTATG+TGG - chr1_4:45885585-45885604 None:intergenic 35.0%
ATTAAACCCTCACAAACCAT+AGG - chr1_4:45885612-45885631 None:intergenic 35.0%
AATGTCCATTTAGTAGTGTG+AGG + chr1_4:45885734-45885753 Msa0165400:intron 35.0%
AAATAAGGTGAGAAAGTTGG+AGG + chr1_4:45886029-45886048 Msa0165400:intron 35.0%
AGGAAAACAATGTGTATGTG+AGG + chr1_4:45886083-45886102 Msa0165400:intron 35.0%
!!! TGTGTATGTGAGGACTTTTT+TGG + chr1_4:45886093-45886112 Msa0165400:intron 35.0%
! TTTGTTGATTACAGGAAGAC+TGG + chr1_4:45886284-45886303 Msa0165400:intron 35.0%
! TTGTTGATTACAGGAAGACT+GGG + chr1_4:45886285-45886304 Msa0165400:intron 35.0%
CCATATCCATCATCACATTT+AGG - chr1_4:45886565-45886584 None:intergenic 35.0%
!! CCTAAATGTGATGATGGATA+TGG + chr1_4:45886562-45886581 Msa0165400:CDS 35.0%
!!! ATGATGGATATGGGTTTTTG+TGG + chr1_4:45886572-45886591 Msa0165400:CDS 35.0%
!! TGATGGATATGGGTTTTTGT+GGG + chr1_4:45886573-45886592 Msa0165400:CDS 35.0%
GATTTGGAAGATCATCATGA+TGG + chr1_4:45886601-45886620 Msa0165400:CDS 35.0%
!! CGAGGTTGATAATAATAGCA+TGG + chr1_4:45886657-45886676 Msa0165400:CDS 35.0%
GGTTCTTATCTCTCAAGTTA+CGG + chr1_4:45886725-45886744 Msa0165400:three_prime_UTR 35.0%
TCTCAAGTTACGGAAATTTG+TGG + chr1_4:45886735-45886754 Msa0165400:three_prime_UTR 35.0%
! TTTCAAGTGTTCAGTGTGAT+TGG + chr1_4:45886842-45886861 Msa0165400:three_prime_UTR 35.0%
! TGATTGGTTAGGGTTTCATT+TGG + chr1_4:45886858-45886877 Msa0165400:three_prime_UTR 35.0%
GTTTCATTTGGTTATTGGGA+GGG + chr1_4:45886870-45886889 Msa0165400:three_prime_UTR 35.0%
TTTCATTTGGTTATTGGGAG+GGG + chr1_4:45886871-45886890 Msa0165400:three_prime_UTR 35.0%
! CATTGATTAGCATTTGTAGG+GGG + chr1_4:45886902-45886921 Msa0165400:three_prime_UTR 35.0%
GGATATATATGGTAGAGGTG+TGG - chr1_4:45883085-45883104 None:intergenic 40.0%
!! TTGGATAGGTAGTGGGTTTA+TGG - chr1_4:45883106-45883125 None:intergenic 40.0%
ATCATGGGTCTTAGAGATGT+CGG + chr1_4:45883174-45883193 Msa0165400:exon 40.0%
AGGATAAAATCGAAAGCCAG+GGG - chr1_4:45883211-45883230 None:intergenic 40.0%
CTAGGATAAAATCGAAAGCC+AGG - chr1_4:45883213-45883232 None:intergenic 40.0%
AGGACCAATTCTTCATCACT+AGG - chr1_4:45883231-45883250 None:intergenic 40.0%
CACAAATGAGGATGTTCTCA+AGG + chr1_4:45883272-45883291 Msa0165400:CDS 40.0%
ATGCAAGTCAATTTCCTCCA+AGG - chr1_4:45883301-45883320 None:intergenic 40.0%
TATATACCAGGAAGTTGCCA+AGG - chr1_4:45883333-45883352 None:intergenic 40.0%
! GTCACTTTATCCGTCTCAAT+TGG + chr1_4:45884887-45884906 Msa0165400:intron 40.0%
CTAAACTCAACGCAACTGAA+TGG + chr1_4:45885208-45885227 Msa0165400:CDS 40.0%
!! CCTATTGGTTCTAAAACCTG+TGG - chr1_4:45885265-45885284 None:intergenic 40.0%
!!! CCACAGGTTTTAGAACCAAT+AGG + chr1_4:45885262-45885281 Msa0165400:CDS 40.0%
GTATTGGAAAGCAACAGGAA+AGG + chr1_4:45885299-45885318 Msa0165400:CDS 40.0%
GTTTGATCCAATCACACATG+AGG + chr1_4:45885332-45885351 Msa0165400:CDS 40.0%
GCTCCAAATGGAATCAAAAC+AGG + chr1_4:45885396-45885415 Msa0165400:CDS 40.0%
GTTGGATCATGCATGAGTTT+AGG + chr1_4:45885418-45885437 Msa0165400:CDS 40.0%
GATCATGCATGAGTTTAGGT+TGG + chr1_4:45885422-45885441 Msa0165400:CDS 40.0%
! ATGAAGCCTATGGTTTGTGA+GGG + chr1_4:45885603-45885622 Msa0165400:intron 40.0%
TGGATCCTCACACTACTAAA+TGG - chr1_4:45885742-45885761 None:intergenic 40.0%
!! TCAAAGCGCATTAGCTTTAG+TGG - chr1_4:45885762-45885781 None:intergenic 40.0%
GCAAATTGGTTGTACCCAAT+TGG - chr1_4:45886415-45886434 None:intergenic 40.0%
! ATATGGGTTTTTGTGGGACA+TGG + chr1_4:45886579-45886598 Msa0165400:CDS 40.0%
! GTTTTTGTGGGACATGGATT+TGG + chr1_4:45886585-45886604 Msa0165400:CDS 40.0%
TATAATCCCAATCATGCACG+TGG - chr1_4:45886805-45886824 None:intergenic 40.0%
ACGTGCATGATTGGGATTAT+AGG + chr1_4:45886804-45886823 Msa0165400:three_prime_UTR 40.0%
! AGTGTTCAGTGTGATTGGTT+AGG + chr1_4:45886847-45886866 Msa0165400:three_prime_UTR 40.0%
! GTGTTCAGTGTGATTGGTTA+GGG + chr1_4:45886848-45886867 Msa0165400:three_prime_UTR 40.0%
GGTTTCATTTGGTTATTGGG+AGG + chr1_4:45886869-45886888 Msa0165400:three_prime_UTR 40.0%
TTCATTTGGTTATTGGGAGG+GGG + chr1_4:45886872-45886891 Msa0165400:three_prime_UTR 40.0%
TGTAAGCTAGGGAGAGAAAG+AGG - chr1_4:45883148-45883167 None:intergenic 45.0%
GGATAAAATCGAAAGCCAGG+GGG - chr1_4:45883210-45883229 None:intergenic 45.0%
! GGGGTTTTGCAGTTACGTTA+CGG + chr1_4:45883713-45883732 Msa0165400:intron 45.0%
ACCAATAGGGCAACAACATC+TGG + chr1_4:45885276-45885295 Msa0165400:CDS 45.0%
CCAATAGGGCAACAACATCT+GGG + chr1_4:45885277-45885296 Msa0165400:CDS 45.0%
!! TCTGGGTATTGGAAAGCAAC+AGG + chr1_4:45885294-45885313 Msa0165400:CDS 45.0%
AGCAACAGGAAAGGATCGAA+CGG + chr1_4:45885308-45885327 Msa0165400:CDS 45.0%
CCTACAACCTCATGTGTGAT+TGG - chr1_4:45885342-45885361 None:intergenic 45.0%
CCAATCACACATGAGGTTGT+AGG + chr1_4:45885339-45885358 Msa0165400:CDS 45.0%
CACATGAGGTTGTAGGAATG+AGG + chr1_4:45885346-45885365 Msa0165400:CDS 45.0%
TACCTTAGGTGGCATATGTG+GGG - chr1_4:45885451-45885470 None:intergenic 45.0%
GTACCTTAGGTGGCATATGT+GGG - chr1_4:45885452-45885471 None:intergenic 45.0%
! GATGAAGCCTATGGTTTGTG+AGG + chr1_4:45885602-45885621 Msa0165400:intron 45.0%
GAGAAAGTTGGAGGAGTGAT+TGG + chr1_4:45886038-45886057 Msa0165400:intron 45.0%
!! TGGTTTGGTTGGTTAGGGAT+GGG - chr1_4:45886390-45886409 None:intergenic 45.0%
!! ATGGTTTGGTTGGTTAGGGA+TGG - chr1_4:45886391-45886410 None:intergenic 45.0%
!! TGGCATGGTTTGGTTGGTTA+GGG - chr1_4:45886395-45886414 None:intergenic 45.0%
!! TTGGCATGGTTTGGTTGGTT+AGG - chr1_4:45886396-45886415 None:intergenic 45.0%
ACCAACCAAACCATGCCAAT+TGG + chr1_4:45886397-45886416 Msa0165400:CDS 45.0%
CCAACCAAACCATGCCAATT+GGG + chr1_4:45886398-45886417 Msa0165400:CDS 45.0%
TGTACCCAATTGGCATGGTT+TGG - chr1_4:45886405-45886424 None:intergenic 45.0%
TTGGTTGTACCCAATTGGCA+TGG - chr1_4:45886410-45886429 None:intergenic 45.0%
! GGAAGATCATCATGATGGTG+TGG + chr1_4:45886606-45886625 Msa0165400:CDS 45.0%
CATTCCTTCCATGTCTGATG+AGG - chr1_4:45886632-45886651 None:intergenic 45.0%
CATGGAAGGAATGAGATTCG+AGG + chr1_4:45886639-45886658 Msa0165400:CDS 45.0%
!! GGATGTTCTCAAGGGTACCT+TGG + chr1_4:45883281-45883300 Msa0165400:CDS 50.0%
!! TGTTCTCAAGGGTACCTTGG+AGG + chr1_4:45883284-45883303 Msa0165400:CDS 50.0%
ACTTGCATACATGCGAGCCT+TGG + chr1_4:45883313-45883332 Msa0165400:CDS 50.0%
GCGGTTAAAACGGCTTCTCT+AGG + chr1_4:45884000-45884019 Msa0165400:intron 50.0%
CGTGACCGTAAATATGCCAC+AGG + chr1_4:45885246-45885265 Msa0165400:CDS 50.0%
CCCAGATGTTGTTGCCCTAT+TGG - chr1_4:45885280-45885299 None:intergenic 50.0%
GGGCAACAACATCTGGGTAT+TGG + chr1_4:45885283-45885302 Msa0165400:CDS 50.0%
CGTACCTTAGGTGGCATATG+TGG - chr1_4:45885453-45885472 None:intergenic 50.0%
! AGGGAGTGTGATGAAGCCTA+TGG + chr1_4:45885593-45885612 Msa0165400:intron 50.0%
! GGTTTGGTTGGTTAGGGATG+GGG - chr1_4:45886389-45886408 None:intergenic 50.0%
!! CCCAATTGGCATGGTTTGGT+TGG - chr1_4:45886401-45886420 None:intergenic 50.0%
GACCCCACATATGCCACCTA+AGG + chr1_4:45885446-45885465 Msa0165400:CDS 55.0%
TGGTGTGGCCTCATCAGACA+TGG + chr1_4:45886621-45886640 Msa0165400:CDS 55.0%
GTGGCCTCATCAGACATGGA+AGG + chr1_4:45886625-45886644 Msa0165400:CDS 55.0%
GGCATGCCACGTGCATGATT+GGG + chr1_4:45886796-45886815 Msa0165400:three_prime_UTR 55.0%
TGCGAGCCTTGGCAACTTCC+TGG + chr1_4:45883324-45883343 Msa0165400:CDS 60.0%
GGGCATGCCACGTGCATGAT+TGG + chr1_4:45886795-45886814 Msa0165400:three_prime_UTR 60.0%
! GTCGGTGCTTCACTTCCCCC+TGG + chr1_4:45883192-45883211 Msa0165400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 45883026 45886962 45883026 ID=Msa0165400;Name=Msa0165400
chr1_4 mRNA 45883026 45886962 45883026 ID=Msa0165400-mRNA-1;Parent=Msa0165400;Name=Msa0165400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=151|1|1|1|1|1|3|272|275
chr1_4 exon 45883026 45883345 45883026 ID=Msa0165400-mRNA-1:exon:13131;Parent=Msa0165400-mRNA-1
chr1_4 exon 45885202 45885467 45885202 ID=Msa0165400-mRNA-1:exon:13132;Parent=Msa0165400-mRNA-1
chr1_4 exon 45886298 45886962 45886298 ID=Msa0165400-mRNA-1:exon:13133;Parent=Msa0165400-mRNA-1
chr1_4 five_prime_UTR 45883026 45883176 45883026 ID=Msa0165400-mRNA-1:five_prime_utr;Parent=Msa0165400-mRNA-1
chr1_4 CDS 45883177 45883345 45883177 ID=Msa0165400-mRNA-1:cds;Parent=Msa0165400-mRNA-1
chr1_4 CDS 45885202 45885467 45885202 ID=Msa0165400-mRNA-1:cds;Parent=Msa0165400-mRNA-1
chr1_4 CDS 45886298 45886690 45886298 ID=Msa0165400-mRNA-1:cds;Parent=Msa0165400-mRNA-1
chr1_4 three_prime_UTR 45886691 45886962 45886691 ID=Msa0165400-mRNA-1:three_prime_utr;Parent=Msa0165400-mRNA-1
Gene Sequence

>Msa0165400

ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTATCCTAGTGATGAAGAATTGGTCCTTCATTACCTTTACAAAAAAATCACAAATGAGGATGTTCTCAAGGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAACTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCCACAGGTTTTAGAACCAATAGGGCAACAACATCTGGGTATTGGAAAGCAACAGGAAAGGATCGAACGGTGTTTGATCCAATCACACATGAGGTTGTAGGAATGAGGAAAACTCTAGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAGACAGAAAATAATGCCAAATTAAGTCCACAAGAAATGTATGAGACTATAGCCCCATCCCTAACCAACCAAACCATGCCAATTGGGTACAACCAATTTGCTTCTTTCTCATCTTCAATGACAACCCACCATTGTCATTTAAATGAGAACCAAAATAATTCTTTGATGAATCTTCTTCAATTTTCTAAGGAAACAAACAACAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGATATGGGTTTTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCAGACATGGAAGGAATGAGATTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA
Protein sequence

>Msa0165400

MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQEMYETIAPSLTNQTMPIGYNQFASFSSSMTTHHCHLNENQNNSLMNLLQFSKETNNNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVASSDMEGMRFEVDNNSMVLL*