Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028160 | XP_003591420.1 | 94.318 | 440 | 25 | 0 | 1 | 440 | 1 | 440 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028160 | sp|Q94KD8|BXL2_ARATH | 78.458 | 441 | 92 | 1 | 3 | 440 | 7 | 447 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028160 | G7IDS0 | 94.318 | 440 | 25 | 0 | 1 | 440 | 1 | 440 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028160 | Msa0082000 | 0.837835 | 4.111640e-57 | -8.615850e-47 |
| Msa0028160 | Msa0128230 | 0.905376 | 4.581770e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028160 | MtrunA17_Chr1g0194841 | 94.318 | 440 | 25 | 0 | 1 | 440 | 1 | 440 | 0.0 | 866 |
| Msa0028160 | MtrunA17_Chr7g0269871 | 81.735 | 438 | 80 | 0 | 3 | 440 | 8 | 445 | 0.0 | 754 |
| Msa0028160 | MtrunA17_Chr2g0294751 | 74.478 | 431 | 105 | 3 | 5 | 432 | 7 | 435 | 0.0 | 668 |
| Msa0028160 | MtrunA17_Chr2g0278761 | 64.368 | 435 | 146 | 3 | 4 | 429 | 16 | 450 | 0.0 | 587 |
| Msa0028160 | MtrunA17_Chr4g0050591 | 64.269 | 431 | 145 | 3 | 8 | 429 | 19 | 449 | 0.0 | 577 |
| Msa0028160 | MtrunA17_Chr1g0207281 | 58.756 | 434 | 172 | 3 | 2 | 429 | 19 | 451 | 0.0 | 545 |
| Msa0028160 | MtrunA17_Chr3g0115601 | 54.483 | 435 | 186 | 5 | 5 | 428 | 9 | 442 | 5.52e-172 | 502 |
| Msa0028160 | MtrunA17_Chr5g0425471 | 51.794 | 446 | 193 | 6 | 3 | 428 | 5 | 448 | 1.65e-164 | 483 |
| Msa0028160 | MtrunA17_Chr5g0425431 | 50.670 | 448 | 199 | 5 | 1 | 428 | 1 | 446 | 2.51e-162 | 477 |
| Msa0028160 | MtrunA17_Chr5g0411571 | 49.339 | 454 | 210 | 5 | 3 | 441 | 8 | 456 | 7.56e-161 | 474 |
| Msa0028160 | MtrunA17_Chr5g0425451 | 51.570 | 446 | 194 | 6 | 3 | 428 | 5 | 448 | 1.11e-160 | 473 |
| Msa0028160 | MtrunA17_Chr5g0425531 | 50.718 | 418 | 194 | 5 | 22 | 428 | 35 | 451 | 3.09e-154 | 457 |
| Msa0028160 | MtrunA17_Chr6g0461231 | 26.190 | 462 | 239 | 16 | 9 | 404 | 6 | 431 | 5.24e-27 | 114 |
| Msa0028160 | MtrunA17_Chr3g0104081 | 25.503 | 447 | 256 | 18 | 27 | 417 | 12 | 437 | 8.13e-26 | 110 |
| Msa0028160 | MtrunA17_Chr6g0461191 | 24.888 | 446 | 239 | 15 | 25 | 404 | 16 | 431 | 1.51e-24 | 106 |
| Msa0028160 | MtrunA17_Chr3g0118971 | 24.706 | 425 | 244 | 16 | 42 | 410 | 33 | 437 | 2.41e-24 | 106 |
| Msa0028160 | MtrunA17_Chr5g0429581 | 28.212 | 358 | 207 | 15 | 81 | 417 | 93 | 421 | 3.67e-24 | 105 |
| Msa0028160 | MtrunA17_Chr6g0461211 | 24.648 | 426 | 225 | 15 | 33 | 394 | 24 | 417 | 7.28e-24 | 104 |
| Msa0028160 | MtrunA17_Chr6g0461221 | 24.183 | 459 | 242 | 16 | 23 | 410 | 15 | 438 | 9.71e-24 | 104 |
| Msa0028160 | MtrunA17_Chr2g0292341 | 24.312 | 436 | 243 | 15 | 43 | 417 | 36 | 445 | 2.19e-22 | 100 |
| Msa0028160 | MtrunA17_Chr7g0253561 | 25.000 | 428 | 248 | 17 | 44 | 417 | 11 | 419 | 6.45e-22 | 99.0 |
| Msa0028160 | MtrunA17_Chr5g0429541 | 24.590 | 427 | 240 | 16 | 43 | 417 | 11 | 407 | 6.49e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028160 | AT1G02640.1 | 78.458 | 441 | 92 | 1 | 3 | 440 | 7 | 447 | 0.0 | 727 |
| Msa0028160 | AT5G49360.1 | 77.442 | 430 | 92 | 4 | 2 | 428 | 12 | 439 | 0.0 | 690 |
| Msa0028160 | AT5G64570.3 | 65.893 | 431 | 139 | 4 | 5 | 428 | 23 | 452 | 0.0 | 582 |
| Msa0028160 | AT5G64570.1 | 65.893 | 431 | 139 | 4 | 5 | 428 | 23 | 452 | 0.0 | 582 |
| Msa0028160 | AT3G19620.1 | 60.137 | 439 | 169 | 3 | 18 | 452 | 22 | 458 | 0.0 | 561 |
| Msa0028160 | AT5G09730.1 | 65.207 | 411 | 139 | 2 | 23 | 429 | 34 | 444 | 0.0 | 557 |
| Msa0028160 | AT1G78060.1 | 54.458 | 415 | 181 | 2 | 22 | 428 | 23 | 437 | 9.38e-172 | 501 |
| Msa0028160 | AT5G10560.1 | 47.312 | 465 | 212 | 4 | 6 | 440 | 5 | 466 | 8.90e-154 | 456 |
| Msa0028160 | AT5G64570.2 | 70.508 | 295 | 83 | 2 | 137 | 428 | 1 | 294 | 4.15e-150 | 441 |
| Msa0028160 | AT5G09700.1 | 61.078 | 167 | 65 | 0 | 279 | 445 | 45 | 211 | 1.33e-61 | 209 |
| Msa0028160 | AT3G47000.1 | 27.484 | 473 | 266 | 19 | 43 | 458 | 16 | 468 | 3.19e-30 | 124 |
| Msa0028160 | AT3G47000.3 | 28.205 | 429 | 235 | 17 | 43 | 417 | 16 | 425 | 8.64e-30 | 121 |
| Msa0028160 | AT3G47040.4 | 24.895 | 474 | 277 | 19 | 43 | 458 | 16 | 468 | 1.11e-26 | 113 |
| Msa0028160 | AT3G47040.3 | 25.581 | 430 | 245 | 17 | 43 | 417 | 16 | 425 | 1.60e-26 | 112 |
| Msa0028160 | AT3G47050.1 | 26.465 | 495 | 264 | 19 | 33 | 456 | 6 | 471 | 2.11e-26 | 112 |
| Msa0028160 | AT3G62710.1 | 28.228 | 333 | 202 | 13 | 102 | 417 | 143 | 455 | 3.77e-26 | 112 |
| Msa0028160 | AT5G20950.2 | 25.234 | 428 | 249 | 16 | 35 | 409 | 24 | 433 | 4.01e-26 | 112 |
| Msa0028160 | AT5G20950.1 | 25.234 | 428 | 249 | 16 | 35 | 409 | 24 | 433 | 4.01e-26 | 112 |
| Msa0028160 | AT5G20950.3 | 25.234 | 428 | 249 | 16 | 35 | 409 | 102 | 511 | 4.45e-26 | 112 |
| Msa0028160 | AT5G04885.2 | 26.395 | 466 | 253 | 15 | 2 | 409 | 21 | 454 | 5.35e-26 | 111 |
| Msa0028160 | AT5G04885.3 | 26.395 | 466 | 253 | 15 | 2 | 409 | 4 | 437 | 5.47e-26 | 111 |
| Msa0028160 | AT5G04885.1 | 26.395 | 466 | 253 | 15 | 2 | 409 | 4 | 437 | 5.47e-26 | 111 |
| Msa0028160 | AT3G47010.4 | 25.785 | 446 | 256 | 18 | 43 | 433 | 17 | 442 | 4.74e-25 | 107 |
| Msa0028160 | AT3G47010.1 | 25.785 | 446 | 256 | 18 | 43 | 433 | 17 | 442 | 9.77e-25 | 107 |
| Msa0028160 | AT3G47010.2 | 25.000 | 444 | 261 | 16 | 43 | 433 | 17 | 441 | 7.04e-24 | 105 |
| Msa0028160 | AT3G47040.1 | 23.647 | 499 | 277 | 20 | 43 | 458 | 16 | 493 | 3.95e-22 | 100 |
| Msa0028160 | AT5G20940.1 | 24.286 | 420 | 247 | 14 | 43 | 409 | 38 | 439 | 4.13e-22 | 99.8 |
| Msa0028160 | AT3G47050.2 | 25.263 | 380 | 208 | 12 | 33 | 356 | 6 | 365 | 1.23e-19 | 90.9 |
| Msa0028160 | AT3G47000.2 | 27.575 | 301 | 184 | 13 | 180 | 458 | 3 | 291 | 5.79e-15 | 77.0 |
| Msa0028160 | AT3G47040.2 | 24.843 | 318 | 202 | 13 | 164 | 458 | 198 | 501 | 1.30e-13 | 73.6 |
| Msa0028160 | AT3G47010.3 | 26.190 | 252 | 166 | 8 | 190 | 433 | 24 | 263 | 4.89e-13 | 71.2 |
Find 145 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTATGATCTTGATAAT+TGG | 0.176588 | 1_1:-52960429 | Msa0028160:CDS |
| ATCTTCTTGTCTTTCCAAAA+TGG | 0.183482 | 1_1:-52961150 | Msa0028160:exon |
| GTGTAACTAGCCTGCTTTAA+TGG | 0.213949 | 1_1:+52959847 | None:intergenic |
| GATGAGGATTGAATCCATTT+TGG | 0.215803 | 1_1:+52961136 | None:intergenic |
| CGTGGTCAATGGCGTCTTAA+TGG | 0.237138 | 1_1:-52960048 | Msa0028160:CDS |
| ACACGTTCAATGTGCCATTT+AGG | 0.256161 | 1_1:-52960173 | Msa0028160:CDS |
| TGTTCTTACAATCAGGTTAA+TGG | 0.264019 | 1_1:-52960114 | Msa0028160:CDS |
| TTGATGATTGTAGGAGTAAT+TGG | 0.294774 | 1_1:-52957945 | Msa0028160:intron |
| TCCTTCACACACATCCTAAA+TGG | 0.313797 | 1_1:+52960159 | None:intergenic |
| CAAACATTCCTAACCTCATT+TGG | 0.313898 | 1_1:+52959599 | None:intergenic |
| GAAGATGAGTGTATAGGTTT+TGG | 0.328073 | 1_1:+52961167 | None:intergenic |
| AACAGACAGTAGTCGGTTAA+AGG | 0.343289 | 1_1:-52960476 | Msa0028160:CDS |
| GCATCGGCAGCAGCTTCTTC+TGG | 0.347935 | 1_1:+52959869 | None:intergenic |
| GAATGGCTGGGTTGACATAC+TGG | 0.348172 | 1_1:-52960615 | Msa0028160:CDS |
| AGCTAGTGGCAGCTGGGAAT+TGG | 0.353343 | 1_1:+52960832 | None:intergenic |
| GATTGTTACAGGTTTGGATT+TGG | 0.354260 | 1_1:-52959722 | Msa0028160:intron |
| TCATTCACCCTTGTTGGTAT+AGG | 0.360034 | 1_1:+52961005 | None:intergenic |
| TTAACCGAAACTGATGTAAA+TGG | 0.366495 | 1_1:-52959646 | Msa0028160:CDS |
| AGCACCATTTACATCAGTTT+CGG | 0.369750 | 1_1:+52959642 | None:intergenic |
| AATTGTTCCCTTTAGAAGAT+TGG | 0.370516 | 1_1:+52960071 | None:intergenic |
| TGGCCACCAAACTTAGTTCC+TGG | 0.373919 | 1_1:+52960852 | None:intergenic |
| ATTGTTCCCTTTAGAAGATT+GGG | 0.374956 | 1_1:+52960072 | None:intergenic |
| GGCAGTGATGCCTTGCAAAA+TGG | 0.376149 | 1_1:+52961026 | None:intergenic |
| CATCGTACTGTGGCAGTCAT+TGG | 0.380479 | 1_1:-52959427 | Msa0028160:CDS |
| GTGGTCAATGGCGTCTTAAT+GGG | 0.395325 | 1_1:-52960047 | Msa0028160:intron |
| GCGTATTTACCTGCTAGAAT+TGG | 0.397933 | 1_1:+52960526 | None:intergenic |
| CTGTAGTCCTCTCACATAAC+TGG | 0.401956 | 1_1:+52960501 | None:intergenic |
| AGTGACAGTAGCATTAGAAT+TGG | 0.406208 | 1_1:+52959402 | None:intergenic |
| GCTTCCTTGTGGGAAGCAAT+TGG | 0.410013 | 1_1:-52960774 | Msa0028160:CDS |
| TTCATTCAATGCTTCCTTGT+GGG | 0.412773 | 1_1:-52960784 | Msa0028160:CDS |
| TGTGATGTGTTCTTACAATC+AGG | 0.419127 | 1_1:-52960121 | Msa0028160:CDS |
| TGAGGGAAGCTAGTGGCAGC+TGG | 0.425971 | 1_1:+52960825 | None:intergenic |
| ATGTACAACGGAGGAATGGC+TGG | 0.431552 | 1_1:-52960628 | Msa0028160:CDS |
| CCCACGATGGGGTCGTGGAC+AGG | 0.434758 | 1_1:-52960566 | Msa0028160:CDS |
| GTGGGACCAGGAACTAAGTT+TGG | 0.438000 | 1_1:-52960858 | Msa0028160:CDS |
| CTGCTGCGGTTCCAAGGGTT+GGG | 0.439330 | 1_1:-52960929 | Msa0028160:CDS |
| GCAAAATGGTAAGTTCTTTG+TGG | 0.441477 | 1_1:+52961040 | None:intergenic |
| ATGAGGTCATTCACCCTTGT+TGG | 0.447171 | 1_1:+52960999 | None:intergenic |
| TATCAGATTGTGATTCTGTT+GGG | 0.449866 | 1_1:-52959925 | Msa0028160:CDS |
| TGGTGGTCAGAGGCACTTCA+TGG | 0.450444 | 1_1:-52960891 | Msa0028160:CDS |
| CAGTTATGTGAGAGGACTAC+AGG | 0.452877 | 1_1:-52960500 | Msa0028160:CDS |
| AGACAAGAAGATGAGTGTAT+AGG | 0.455004 | 1_1:+52961161 | None:intergenic |
| GCTGCTGCGGTTCCAAGGGT+TGG | 0.456048 | 1_1:-52960930 | Msa0028160:CDS |
| AAGGTTGACATTGCAAGAAA+AGG | 0.459521 | 1_1:-52960973 | Msa0028160:CDS |
| TTTAGCTAGTGGCTTGGAGT+TGG | 0.466311 | 1_1:-52957910 | Msa0028160:CDS |
| TGCTGACCCCAATCTTCTAA+AGG | 0.467676 | 1_1:-52960079 | Msa0028160:CDS |
| ACAGGTTTGGATTTGGATTG+TGG | 0.471236 | 1_1:-52959715 | Msa0028160:intron |
| GTGACAGTAGCATTAGAATT+GGG | 0.478045 | 1_1:+52959403 | None:intergenic |
| CAGCTTCAAGAGCCAAGTCT+TGG | 0.484108 | 1_1:+52959512 | None:intergenic |
| CACTCCAACTCACCAAGACT+TGG | 0.485796 | 1_1:-52959524 | Msa0028160:CDS |
| CTTACAGTCCAAATGAGGTT+AGG | 0.488722 | 1_1:-52959607 | Msa0028160:CDS |
| AGAGCCAAGTCTTGGTGAGT+TGG | 0.488819 | 1_1:+52959520 | None:intergenic |
| ACAATGCTGCTGCGGTTCCA+AGG | 0.489142 | 1_1:-52960935 | Msa0028160:CDS |
| CTTCTAAAGGGAACAATTCG+TGG | 0.489838 | 1_1:-52960066 | Msa0028160:CDS |
| CTTCATTCAATGCTTCCTTG+TGG | 0.497472 | 1_1:-52960785 | Msa0028160:CDS |
| GCTGCCGATGCCATTAAAGC+AGG | 0.502258 | 1_1:-52959857 | Msa0028160:intron |
| CTGGTGTTGATGTATAATGT+TGG | 0.502939 | 1_1:+52959888 | None:intergenic |
| AGGGAACAATTCGTGGTCAA+TGG | 0.503217 | 1_1:-52960059 | Msa0028160:CDS |
| AAGGAATTTAGCTAGTGGCT+TGG | 0.504952 | 1_1:-52957916 | Msa0028160:CDS |
| TAGGAGTAATTGGAGGAAGA+AGG | 0.505336 | 1_1:-52957935 | Msa0028160:CDS |
| ACTATGATCGGCAACTATGC+TGG | 0.508582 | 1_1:-52959382 | Msa0028160:intron |
| GTACATCGCCCTTGCTTCGT+CGG | 0.510150 | 1_1:+52960645 | None:intergenic |
| GTATCAGATTGTGATTCTGT+TGG | 0.511438 | 1_1:-52959926 | Msa0028160:CDS |
| TTGCCGTATGGTTGAGCAGA+TGG | 0.512897 | 1_1:+52959568 | None:intergenic |
| TGCTAGAATTGGATCCTCAC+CGG | 0.513683 | 1_1:+52960537 | None:intergenic |
| CAACGGTGGCGATGACTTGA+GGG | 0.514265 | 1_1:+52960808 | None:intergenic |
| AGGTTGCTTCCGACGAAGCA+AGG | 0.515976 | 1_1:-52960654 | Msa0028160:CDS |
| GCTGACCCCAATCTTCTAAA+GGG | 0.516568 | 1_1:-52960078 | Msa0028160:CDS |
| GTTCCAAGGGTTGGGATCAA+AGG | 0.517619 | 1_1:-52960921 | Msa0028160:CDS |
| GATTCCTCTAGAACACTTTG+TGG | 0.529460 | 1_1:+52957879 | None:intergenic |
| TTTCTCCTTCTCTTATTGAG+TGG | 0.531540 | 1_1:-52961104 | Msa0028160:CDS |
| TAACCTTTGATCCCAACCCT+TGG | 0.532115 | 1_1:+52960918 | None:intergenic |
| AATGCTACTGTCACTATGAT+CGG | 0.536100 | 1_1:-52959394 | Msa0028160:CDS |
| TAAAGGAACTCATAATCTTG+TGG | 0.537970 | 1_1:+52957855 | None:intergenic |
| GCAACGGTGGCGATGACTTG+AGG | 0.540298 | 1_1:+52960807 | None:intergenic |
| ACAAGGGTGAATGACCTCAT+TGG | 0.540784 | 1_1:-52960996 | Msa0028160:CDS |
| TGTTGATGTATAATGTTGGT+TGG | 0.540874 | 1_1:+52959892 | None:intergenic |
| TCGCTTTCACTTTAATGCAA+AGG | 0.541204 | 1_1:-52960395 | Msa0028160:intron |
| ATGAGGTTAGGAATGTTTGA+TGG | 0.546650 | 1_1:-52959595 | Msa0028160:CDS |
| CCTTGTGGGAAGCAATTGGA+CGG | 0.549327 | 1_1:-52960770 | Msa0028160:CDS |
| CCTTCTCTTATTGAGTGGTG+AGG | 0.551148 | 1_1:-52961099 | Msa0028160:CDS |
| GCTCAACCATACGGCAACCT+TGG | 0.551862 | 1_1:-52959562 | Msa0028160:CDS |
| GCTCTTGAAGCTGCAAGACA+AGG | 0.552551 | 1_1:-52959502 | Msa0028160:CDS |
| CCTGTCCACGACCCCATCGT+GGG | 0.553753 | 1_1:+52960566 | None:intergenic |
| AGGGACCCACGATGGGGTCG+TGG | 0.557616 | 1_1:-52960571 | Msa0028160:CDS |
| TGGGTATGTTGTGCAAGGAA+AGG | 0.559911 | 1_1:+52959691 | None:intergenic |
| GGCGATGTACAACGGAGGAA+TGG | 0.561330 | 1_1:-52960632 | Msa0028160:CDS |
| TTTGCCACAAAGTGTTCTAG+AGG | 0.562400 | 1_1:-52957883 | Msa0028160:CDS |
| CTAGCCTGCTTTAATGGCAT+CGG | 0.564008 | 1_1:+52959853 | None:intergenic |
| CTACATGCAGGTTAGCAAGC+AGG | 0.567726 | 1_1:-52960205 | Msa0028160:intron |
| GAGGGAAGCTAGTGGCAGCT+GGG | 0.568859 | 1_1:+52960826 | None:intergenic |
| ATCAGATTGTGATTCTGTTG+GGG | 0.569005 | 1_1:-52959924 | Msa0028160:CDS |
| CAATGCTGCTGCGGTTCCAA+GGG | 0.573627 | 1_1:-52960934 | Msa0028160:CDS |
| GGTTGCTTCCGACGAAGCAA+GGG | 0.573928 | 1_1:-52960653 | Msa0028160:CDS |
| CTCTTGAAGCTGCAAGACAA+GGG | 0.577031 | 1_1:-52959501 | Msa0028160:CDS |
| CTTGTGGGAAGCAATTGGAC+GGG | 0.577173 | 1_1:-52960769 | Msa0028160:intron |
| ATTGTGCTTCTTAAGAACAC+TGG | 0.577447 | 1_1:-52959478 | Msa0028160:CDS |
| GCTAGAATTGGATCCTCACC+GGG | 0.579336 | 1_1:+52960538 | None:intergenic |
| GAGCCATCTGCTCAACCATA+CGG | 0.579442 | 1_1:-52959571 | Msa0028160:CDS |
| GCAGGTTAGCAAGCAGGACA+TGG | 0.581137 | 1_1:-52960199 | Msa0028160:intron |
| GATTGGGGTCAGCACAAGTA+GGG | 0.582749 | 1_1:+52960088 | None:intergenic |
| AGATTGGGGTCAGCACAAGT+AGG | 0.584959 | 1_1:+52960087 | None:intergenic |
| CTTCATGGAGTTTCAAATGT+GGG | 0.585312 | 1_1:-52960876 | Msa0028160:CDS |
| GGTGAGGATCCAATTCTAGC+AGG | 0.588795 | 1_1:-52960535 | Msa0028160:CDS |
| TCCTGTCCACGACCCCATCG+TGG | 0.592950 | 1_1:+52960565 | None:intergenic |
| TTGTTCCCTTTAGAAGATTG+GGG | 0.593071 | 1_1:+52960073 | None:intergenic |
| GGTCGTGGACAGGAGACTCC+CGG | 0.595003 | 1_1:-52960556 | Msa0028160:CDS |
| GTTGGACCAAGGTTGCCGTA+TGG | 0.596559 | 1_1:+52959556 | None:intergenic |
| TTTAGGATGTGTGTGAAGGA+AGG | 0.597067 | 1_1:-52960156 | Msa0028160:CDS |
| GGAGAAATACAATGGTGATG+AGG | 0.597505 | 1_1:+52961120 | None:intergenic |
| ATGATTGTAGGAGTAATTGG+AGG | 0.599396 | 1_1:-52957942 | Msa0028160:intron |
| TATGATCTTGATAATTGGAA+TGG | 0.601843 | 1_1:-52960424 | Msa0028160:CDS |
| GGAGTTTCAAATGTGGGACC+AGG | 0.604839 | 1_1:-52960870 | Msa0028160:CDS |
| CCGTCCAATTGCTTCCCACA+AGG | 0.609866 | 1_1:+52960770 | None:intergenic |
| ACACACTTACAGTCCAAATG+AGG | 0.611542 | 1_1:-52959612 | Msa0028160:CDS |
| GGACCAGGAACTAAGTTTGG+TGG | 0.612020 | 1_1:-52960855 | Msa0028160:CDS |
| AGGTTATGAGTGGTGGTCAG+AGG | 0.619591 | 1_1:-52960901 | Msa0028160:CDS |
| GGATCAAAGGTTATGAGTGG+TGG | 0.620241 | 1_1:-52960908 | Msa0028160:CDS |
| TACAGGGAACAGACAGTAGT+CGG | 0.622154 | 1_1:-52960483 | Msa0028160:CDS |
| CATCACTGCCTATACCAACA+AGG | 0.622164 | 1_1:-52961013 | Msa0028160:CDS |
| CCTCACCACTCAATAAGAGA+AGG | 0.624741 | 1_1:+52961099 | None:intergenic |
| GTGTGTGAAGGAAGGTAATG+TGG | 0.627264 | 1_1:-52960148 | Msa0028160:CDS |
| GGAAGCATTGAATGAAGCAA+CGG | 0.628505 | 1_1:+52960791 | None:intergenic |
| GGGTGAATGACCTCATTGGA+AGG | 0.631580 | 1_1:-52960992 | Msa0028160:CDS |
| GTTGGAGTGCACACATCAGT+TGG | 0.632858 | 1_1:+52959538 | None:intergenic |
| GAAGCAAGGGCGATGTACAA+CGG | 0.635473 | 1_1:-52960640 | Msa0028160:CDS |
| TAAGAGAAGGAGAAATACAA+TGG | 0.637514 | 1_1:+52961112 | None:intergenic |
| ACTTCATGGAGTTTCAAATG+TGG | 0.641554 | 1_1:-52960877 | Msa0028160:CDS |
| AGTTATGTGAGAGGACTACA+GGG | 0.641980 | 1_1:-52960499 | Msa0028160:CDS |
| TGTACAACGGAGGAATGGCT+GGG | 0.643008 | 1_1:-52960627 | Msa0028160:CDS |
| ATCACTGCCTATACCAACAA+GGG | 0.645073 | 1_1:-52961012 | Msa0028160:CDS |
| GCCATTTAGGATGTGTGTGA+AGG | 0.646990 | 1_1:-52960160 | Msa0028160:CDS |
| TTGGGATCAAAGGTTATGAG+TGG | 0.652242 | 1_1:-52960911 | Msa0028160:CDS |
| TACGCTGCCAGTTATGTGAG+AGG | 0.656249 | 1_1:-52960508 | Msa0028160:CDS |
| AGACAGTAGTCGGTTAAAGG+TGG | 0.660144 | 1_1:-52960473 | Msa0028160:CDS |
| TGCACACATCAGTTGGACCA+AGG | 0.660395 | 1_1:+52959545 | None:intergenic |
| GGAAGAAGGAATTTAGCTAG+TGG | 0.660869 | 1_1:-52957921 | Msa0028160:CDS |
| TCTTGATAATTGGAATGGTG+TGG | 0.662682 | 1_1:-52960419 | Msa0028160:CDS |
| AGCATTGAATGAAGCAACGG+TGG | 0.670771 | 1_1:+52960794 | None:intergenic |
| AAATGGTAAGTTCTTTGTGG+AGG | 0.680816 | 1_1:+52961043 | None:intergenic |
| GCAATGTCAACCTTCCAATG+AGG | 0.684875 | 1_1:+52960982 | None:intergenic |
| GATGACTTGAGGGAAGCTAG+TGG | 0.693625 | 1_1:+52960818 | None:intergenic |
| TGGACAGGAGACTCCCGGTG+AGG | 0.696359 | 1_1:-52960551 | Msa0028160:CDS |
| GTTAGTGAACAATGCTGCTG+CGG | 0.699085 | 1_1:-52960943 | Msa0028160:CDS |
| GCAAGGGCGATGTACAACGG+AGG | 0.742537 | 1_1:-52960637 | Msa0028160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTACTATATTTTCTT+TGG | - | chr1_1:52959064-52959083 | Msa0028160:intron | 15.0% |
| !! | AAATATATCAACCATTAATT+AGG | + | chr1_1:52959285-52959304 | None:intergenic | 15.0% |
| !!! | AAATTACTTTCTTTGAAATT+TGG | - | chr1_1:52960364-52960383 | Msa0028160:intron | 15.0% |
| !! | ATTCAAAAAAAAAATCTCAT+GGG | + | chr1_1:52960525-52960544 | None:intergenic | 15.0% |
| !! | GATTAAAATAGAAGAAATGT+GGG | - | chr1_1:52958755-52958774 | Msa0028160:intron | 20.0% |
| !!! | TATTTTCTTTGGTGTAATTT+AGG | - | chr1_1:52959075-52959094 | Msa0028160:intron | 20.0% |
| !!! | ATATATTTGATGATTGTTAC+AGG | - | chr1_1:52959297-52959316 | Msa0028160:intron | 20.0% |
| !! | TTAAAGGCAATATAAATTGA+AGG | - | chr1_1:52959853-52959872 | Msa0028160:intron | 20.0% |
| !! | TAAAGGCAATATAAATTGAA+GGG | - | chr1_1:52959854-52959873 | Msa0028160:intron | 20.0% |
| !!! | AGAATATGCTAAAATTTTGT+TGG | - | chr1_1:52960164-52960183 | Msa0028160:CDS | 20.0% |
| !! | TAAGATATATGGAATGTAAA+TGG | - | chr1_1:52960213-52960232 | Msa0028160:intron | 20.0% |
| !! | GATTCAAAAAAAAAATCTCA+TGG | + | chr1_1:52960526-52960545 | None:intergenic | 20.0% |
| !!! | GAGATTTTTTTTTTGAATCA+AGG | - | chr1_1:52960527-52960546 | Msa0028160:CDS | 20.0% |
| !!! | TTTTTGAATCAAGGTTAAAA+TGG | - | chr1_1:52960536-52960555 | Msa0028160:CDS | 20.0% |
| !!! | TAGAGTAAAAATTGATGATT+TGG | + | chr1_1:52960857-52960876 | None:intergenic | 20.0% |
| !! | TTAATGTGTTCAAAATGTTA+TGG | - | chr1_1:52961042-52961061 | Msa0028160:CDS | 20.0% |
| !! | TAATGTGTTCAAAATGTTAT+GGG | - | chr1_1:52961043-52961062 | Msa0028160:CDS | 20.0% |
| !! | TCCAAATGTGAACATTTTTA+GGG | - | chr1_1:52958440-52958459 | Msa0028160:intron | 25.0% |
| !! | TATGATCTTGATAATTGGAA+TGG | - | chr1_1:52958606-52958625 | Msa0028160:intron | 25.0% |
| ! | GTGTATACCATAAACATAAA+GGG | + | chr1_1:52958663-52958682 | None:intergenic | 25.0% |
| ! | AGTGTATACCATAAACATAA+AGG | + | chr1_1:52958664-52958683 | None:intergenic | 25.0% |
| !! | CACTTTTGTACTATGTAATA+TGG | - | chr1_1:52958700-52958719 | Msa0028160:intron | 25.0% |
| !!! | CATTTCTTCTATTTTAATCC+AGG | + | chr1_1:52958754-52958773 | None:intergenic | 25.0% |
| ! | GGATTAAAATAGAAGAAATG+TGG | - | chr1_1:52958754-52958773 | Msa0028160:intron | 25.0% |
| ! | AAAACTAGGAACCTAATTAA+TGG | - | chr1_1:52959271-52959290 | Msa0028160:intron | 25.0% |
| !! | NNNNNNNNTTCTAGGAGTTG+TGG | - | chr1_1:52959822-52959841 | Msa0028160:intron | 25.0% |
| ! | AGTTGTGGATGAAAATTTAA+AGG | - | chr1_1:52959837-52959856 | Msa0028160:intron | 25.0% |
| !! | GTGATGTTGATTAAGATATA+TGG | - | chr1_1:52960202-52960221 | Msa0028160:intron | 25.0% |
| ! | AGAACAAAGAAATGAATTAG+TGG | + | chr1_1:52960249-52960268 | None:intergenic | 25.0% |
| ! | ATTCATTTCTTTGTTCTCAT+TGG | - | chr1_1:52960252-52960271 | Msa0028160:intron | 25.0% |
| ! | TACACTCAAATATCTCTAAA+TGG | + | chr1_1:52960570-52960589 | None:intergenic | 25.0% |
| ! | TTTGGAAATTTAGAAAGGAA+GGG | + | chr1_1:52960839-52960858 | None:intergenic | 25.0% |
| ! | ATTTGGAAATTTAGAAAGGA+AGG | + | chr1_1:52960840-52960859 | None:intergenic | 25.0% |
| !! | GATGATTTGGAAATTTAGAA+AGG | + | chr1_1:52960844-52960863 | None:intergenic | 25.0% |
| ! | CTAACTTCATTGAAATCATT+TGG | - | chr1_1:52960874-52960893 | Msa0028160:CDS | 25.0% |
| !! | TTAACATGTTTGATGATTGT+AGG | - | chr1_1:52961076-52961095 | Msa0028160:CDS | 25.0% |
| ATCTTCTTGTCTTTCCAAAA+TGG | - | chr1_1:52957880-52957899 | Msa0028160:CDS | 30.0% | |
| TAAGAGAAGGAGAAATACAA+TGG | + | chr1_1:52957921-52957940 | None:intergenic | 30.0% | |
| ! | AAAGAACTTACCATTTTGCA+AGG | - | chr1_1:52957994-52958013 | Msa0028160:intron | 30.0% |
| ! | TTTTCATTGATCTAACGTAG+CGG | - | chr1_1:52958342-52958361 | Msa0028160:intron | 30.0% |
| ! | GTCCAAATGTGAACATTTTT+AGG | - | chr1_1:52958439-52958458 | Msa0028160:intron | 30.0% |
| TCCCTAAAAATGTTCACATT+TGG | + | chr1_1:52958444-52958463 | None:intergenic | 30.0% | |
| ! | CTGCTTATGATCTTGATAAT+TGG | - | chr1_1:52958601-52958620 | Msa0028160:intron | 30.0% |
| !! | AAAGGTACCCTTTATGTTTA+TGG | - | chr1_1:52958653-52958672 | Msa0028160:intron | 30.0% |
| TGGTATACACTTCTAGATAT+AGG | - | chr1_1:52958673-52958692 | Msa0028160:intron | 30.0% | |
| TGTTCTTACAATCAGGTTAA+TGG | - | chr1_1:52958916-52958935 | Msa0028160:intron | 30.0% | |
| ! | ATTGTTCCCTTTAGAAGATT+GGG | + | chr1_1:52958961-52958980 | None:intergenic | 30.0% |
| ! | AATTGTTCCCTTTAGAAGAT+TGG | + | chr1_1:52958962-52958981 | None:intergenic | 30.0% |
| TATCAGATTGTGATTCTGTT+GGG | - | chr1_1:52959105-52959124 | Msa0028160:intron | 30.0% | |
| TGTTGATGTATAATGTTGGT+TGG | + | chr1_1:52959141-52959160 | None:intergenic | 30.0% | |
| CATCGTGTGTTCATATTTAT+TGG | + | chr1_1:52959229-52959248 | None:intergenic | 30.0% | |
| TTCTTCGGCATAAAAAAACT+AGG | - | chr1_1:52959257-52959276 | Msa0028160:intron | 30.0% | |
| ! | TTTGATGATTGTTACAGGTT+TGG | - | chr1_1:52959302-52959321 | Msa0028160:intron | 30.0% |
| !!! | GGTTAACAAGCCTTTTTTAA+CGG | + | chr1_1:52959370-52959389 | None:intergenic | 30.0% |
| TTAACCGAAACTGATGTAAA+TGG | - | chr1_1:52959384-52959403 | Msa0028160:CDS | 30.0% | |
| ! | TTAAATTGCTTCCGATTTGT+TGG | - | chr1_1:52959913-52959932 | Msa0028160:CDS | 30.0% |
| ! | TAAATTGCTTCCGATTTGTT+GGG | - | chr1_1:52959914-52959933 | Msa0028160:CDS | 30.0% |
| ACTACCAATTGTCGTATTTA+GGG | + | chr1_1:52959985-52960004 | None:intergenic | 30.0% | |
| ! | AAGCTTTTCTTGCACTAAAA+GGG | - | chr1_1:52960018-52960037 | Msa0028160:intron | 30.0% |
| TAGTGTCACAAGATGTATAT+TGG | - | chr1_1:52960048-52960067 | Msa0028160:CDS | 30.0% | |
| AGTTGAAAAATCTCTTGTGT+AGG | - | chr1_1:52960103-52960122 | Msa0028160:CDS | 30.0% | |
| !!! | GATTTTTTATGTCGTGGTTA+TGG | + | chr1_1:52960455-52960474 | None:intergenic | 30.0% |
| !!! | TATGCTGATTTTTTATGTCG+TGG | + | chr1_1:52960461-52960480 | None:intergenic | 30.0% |
| ATGGGATATTACACTACTAT+TGG | + | chr1_1:52960507-52960526 | None:intergenic | 30.0% | |
| ACATAGAATTGTGTAGAAAG+TGG | + | chr1_1:52960603-52960622 | None:intergenic | 30.0% | |
| CAAAGGAAAAGAAATTGTCT+TGG | + | chr1_1:52960643-52960662 | None:intergenic | 30.0% | |
| AAGATGAAGAAATTGAGAGA+GGG | + | chr1_1:52960687-52960706 | None:intergenic | 30.0% | |
| TAACACTACTAAGAACAGTT+GGG | + | chr1_1:52960753-52960772 | None:intergenic | 30.0% | |
| ATAACACTACTAAGAACAGT+TGG | + | chr1_1:52960754-52960773 | None:intergenic | 30.0% | |
| TTGGAAATTTAGAAAGGAAG+GGG | + | chr1_1:52960838-52960857 | None:intergenic | 30.0% | |
| ATTGAAATCATTTGGAAGTG+AGG | - | chr1_1:52960882-52960901 | Msa0028160:CDS | 30.0% | |
| !! | CCAATGCTTTAAAACATCAT+GGG | + | chr1_1:52960919-52960938 | None:intergenic | 30.0% |
| !! | ACCAATGCTTTAAAACATCA+TGG | + | chr1_1:52960920-52960939 | None:intergenic | 30.0% |
| AATTGAAGCATATACACCAA+AGG | + | chr1_1:52961015-52961034 | None:intergenic | 30.0% | |
| ! | TTGATGATTGTAGGAGTAAT+TGG | - | chr1_1:52961085-52961104 | Msa0028160:CDS | 30.0% |
| TAAAGGAACTCATAATCTTG+TGG | + | chr1_1:52961178-52961197 | None:intergenic | 30.0% | |
| !! | ATGAGTGTATAGGTTTTGGT+GGG | + | chr1_1:52957862-52957881 | None:intergenic | 35.0% |
| ! | GAAGATGAGTGTATAGGTTT+TGG | + | chr1_1:52957866-52957885 | None:intergenic | 35.0% |
| AGACAAGAAGATGAGTGTAT+AGG | + | chr1_1:52957872-52957891 | None:intergenic | 35.0% | |
| ! | GATGAGGATTGAATCCATTT+TGG | + | chr1_1:52957897-52957916 | None:intergenic | 35.0% |
| TTTCTCCTTCTCTTATTGAG+TGG | - | chr1_1:52957926-52957945 | Msa0028160:CDS | 35.0% | |
| !!! | TTTTTGGGTCACATGCAAAA+GGG | + | chr1_1:52957964-52957983 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGTCACATGCAAA+AGG | + | chr1_1:52957965-52957984 | None:intergenic | 35.0% |
| !!! | TCTTTGTGGAGGTGTTTTTT+GGG | + | chr1_1:52957979-52957998 | None:intergenic | 35.0% |
| !!! | TTCTTTGTGGAGGTGTTTTT+TGG | + | chr1_1:52957980-52957999 | None:intergenic | 35.0% |
| AAATGGTAAGTTCTTTGTGG+AGG | + | chr1_1:52957990-52958009 | None:intergenic | 35.0% | |
| GCAAAATGGTAAGTTCTTTG+TGG | + | chr1_1:52957993-52958012 | None:intergenic | 35.0% | |
| AAGGTTGACATTGCAAGAAA+AGG | - | chr1_1:52958057-52958076 | Msa0028160:intron | 35.0% | |
| ACTTCATGGAGTTTCAAATG+TGG | - | chr1_1:52958153-52958172 | Msa0028160:intron | 35.0% | |
| CTTCATGGAGTTTCAAATGT+GGG | - | chr1_1:52958154-52958173 | Msa0028160:intron | 35.0% | |
| TTCATTCAATGCTTCCTTGT+GGG | - | chr1_1:52958246-52958265 | Msa0028160:intron | 35.0% | |
| ! | TCTTGATAATTGGAATGGTG+TGG | - | chr1_1:52958611-52958630 | Msa0028160:intron | 35.0% |
| TCGCTTTCACTTTAATGCAA+AGG | - | chr1_1:52958635-52958654 | Msa0028160:intron | 35.0% | |
| TTATACTCATGTCTACATGC+AGG | - | chr1_1:52958813-52958832 | Msa0028160:intron | 35.0% | |
| TGTGATGTGTTCTTACAATC+AGG | - | chr1_1:52958909-52958928 | Msa0028160:intron | 35.0% | |
| ! | TTGTTCCCTTTAGAAGATTG+GGG | + | chr1_1:52958960-52958979 | None:intergenic | 35.0% |
| GTATCAGATTGTGATTCTGT+TGG | - | chr1_1:52959104-52959123 | Msa0028160:intron | 35.0% | |
| ATCAGATTGTGATTCTGTTG+GGG | - | chr1_1:52959106-52959125 | Msa0028160:intron | 35.0% | |
| !! | CTGGTGTTGATGTATAATGT+TGG | + | chr1_1:52959145-52959164 | None:intergenic | 35.0% |
| ! | CACGATGATGCATTTTTCTT+CGG | - | chr1_1:52959242-52959261 | Msa0028160:intron | 35.0% |
| GATTGTTACAGGTTTGGATT+TGG | - | chr1_1:52959308-52959327 | Msa0028160:intron | 35.0% | |
| ACCCAAAATGCCGTTAAAAA+AGG | - | chr1_1:52959357-52959376 | Msa0028160:intron | 35.0% | |
| !!! | GCCTTTTTTAACGGCATTTT+GGG | + | chr1_1:52959361-52959380 | None:intergenic | 35.0% |
| !!! | AGCCTTTTTTAACGGCATTT+TGG | + | chr1_1:52959362-52959381 | None:intergenic | 35.0% |
| AGCACCATTTACATCAGTTT+CGG | + | chr1_1:52959391-52959410 | None:intergenic | 35.0% | |
| CAAACATTCCTAACCTCATT+TGG | + | chr1_1:52959434-52959453 | None:intergenic | 35.0% | |
| ATGAGGTTAGGAATGTTTGA+TGG | - | chr1_1:52959435-52959454 | Msa0028160:CDS | 35.0% | |
| ATTGTGCTTCTTAAGAACAC+TGG | - | chr1_1:52959552-52959571 | Msa0028160:CDS | 35.0% | |
| GTGACAGTAGCATTAGAATT+GGG | + | chr1_1:52959630-52959649 | None:intergenic | 35.0% | |
| AGTGACAGTAGCATTAGAAT+TGG | + | chr1_1:52959631-52959650 | None:intergenic | 35.0% | |
| AATGCTACTGTCACTATGAT+CGG | - | chr1_1:52959636-52959655 | Msa0028160:CDS | 35.0% | |
| CGATAATATGCCCAACAAAT+CGG | + | chr1_1:52959927-52959946 | None:intergenic | 35.0% | |
| ! | ATTTGTTGGGCATATTATCG+TGG | - | chr1_1:52959927-52959946 | Msa0028160:CDS | 35.0% |
| CACTACCAATTGTCGTATTT+AGG | + | chr1_1:52959986-52960005 | None:intergenic | 35.0% | |
| CTAAATACGACAATTGGTAG+TGG | - | chr1_1:52959984-52960003 | Msa0028160:intron | 35.0% | |
| ! | GAAGCTTTTCTTGCACTAAA+AGG | - | chr1_1:52960017-52960036 | Msa0028160:intron | 35.0% |
| AAGTAATACAACCAGATTGC+AGG | + | chr1_1:52960083-52960102 | None:intergenic | 35.0% | |
| ATCTCTTGCCAATACTTATG+CGG | - | chr1_1:52960297-52960316 | Msa0028160:intron | 35.0% | |
| CTATCAAACCGCATAAGTAT+TGG | + | chr1_1:52960308-52960327 | None:intergenic | 35.0% | |
| TTTATGTCGTGGTTATGGTT+TGG | + | chr1_1:52960450-52960469 | None:intergenic | 35.0% | |
| GCATAACAACTAGTAAGACT+AGG | - | chr1_1:52960476-52960495 | Msa0028160:CDS | 35.0% | |
| TTTGACACACAACACCATAT+CGG | - | chr1_1:52960659-52960678 | Msa0028160:intron | 35.0% | |
| GAAGATGAAGAAATTGAGAG+AGG | + | chr1_1:52960688-52960707 | None:intergenic | 35.0% | |
| TCTTGAGGATTTGAATGGTT+TGG | + | chr1_1:52960712-52960731 | None:intergenic | 35.0% | |
| GTGATTCTTGAGGATTTGAA+TGG | + | chr1_1:52960717-52960736 | None:intergenic | 35.0% | |
| !!! | CCCATGATGTTTTAAAGCAT+TGG | - | chr1_1:52960916-52960935 | Msa0028160:CDS | 35.0% |
| ATGCTTCTTTCTTTCTGTGT+TGG | - | chr1_1:52960952-52960971 | Msa0028160:CDS | 35.0% | |
| ! | GCAATTTTTCCCCAAAATGA+TGG | + | chr1_1:52960993-52961012 | None:intergenic | 35.0% |
| !! | TTTTGGGGAAAAATTGCCTT+TGG | - | chr1_1:52960996-52961015 | Msa0028160:CDS | 35.0% |
| ATGATTGTAGGAGTAATTGG+AGG | - | chr1_1:52961088-52961107 | Msa0028160:CDS | 35.0% | |
| !! | GATGAGTGTATAGGTTTTGG+TGG | + | chr1_1:52957863-52957882 | None:intergenic | 40.0% |
| ! | GGAGAAATACAATGGTGATG+AGG | + | chr1_1:52957913-52957932 | None:intergenic | 40.0% |
| ATCACTGCCTATACCAACAA+GGG | - | chr1_1:52958018-52958037 | Msa0028160:intron | 40.0% | |
| TCATTCACCCTTGTTGGTAT+AGG | + | chr1_1:52958028-52958047 | None:intergenic | 40.0% | |
| TTGGGATCAAAGGTTATGAG+TGG | - | chr1_1:52958119-52958138 | Msa0028160:intron | 40.0% | |
| !! | GGAAGCATTGAATGAAGCAA+CGG | + | chr1_1:52958242-52958261 | None:intergenic | 40.0% |
| CTTCATTCAATGCTTCCTTG+TGG | - | chr1_1:52958245-52958264 | Msa0028160:intron | 40.0% | |
| GCGTATTTACCTGCTAGAAT+TGG | + | chr1_1:52958507-52958526 | None:intergenic | 40.0% | |
| AGTTATGTGAGAGGACTACA+GGG | - | chr1_1:52958531-52958550 | Msa0028160:intron | 40.0% | |
| AACAGACAGTAGTCGGTTAA+AGG | - | chr1_1:52958554-52958573 | Msa0028160:intron | 40.0% | |
| !! | GATTACCAAAAGTGTTGGAC+TGG | + | chr1_1:52958732-52958751 | None:intergenic | 40.0% |
| !! | TCCAACACTTTTGGTAATCC+TGG | - | chr1_1:52958733-52958752 | Msa0028160:intron | 40.0% |
| ! | TCCAGGATTACCAAAAGTGT+TGG | + | chr1_1:52958737-52958756 | None:intergenic | 40.0% |
| !! | ACACGTTCAATGTGCCATTT+AGG | - | chr1_1:52958857-52958876 | Msa0028160:intron | 40.0% |
| TCCTTCACACACATCCTAAA+TGG | + | chr1_1:52958874-52958893 | None:intergenic | 40.0% | |
| ! | TTTAGGATGTGTGTGAAGGA+AGG | - | chr1_1:52958874-52958893 | Msa0028160:intron | 40.0% |
| ! | CTTCTAAAGGGAACAATTCG+TGG | - | chr1_1:52958964-52958983 | Msa0028160:intron | 40.0% |
| ! | GTGTAACTAGCCTGCTTTAA+TGG | + | chr1_1:52959186-52959205 | None:intergenic | 40.0% |
| ACAGGTTTGGATTTGGATTG+TGG | - | chr1_1:52959315-52959334 | Msa0028160:intron | 40.0% | |
| !! | CATTTTGGGTATGTTGTGCA+AGG | + | chr1_1:52959347-52959366 | None:intergenic | 40.0% |
| ACACACTTACAGTCCAAATG+AGG | - | chr1_1:52959418-52959437 | Msa0028160:CDS | 40.0% | |
| CTTACAGTCCAAATGAGGTT+AGG | - | chr1_1:52959423-52959442 | Msa0028160:CDS | 40.0% | |
| ! | CACAGTACGATGATTTTTCG+TGG | + | chr1_1:52959595-52959614 | None:intergenic | 40.0% |
| CACGAAAAATCATCGTACTG+TGG | - | chr1_1:52959593-52959612 | Msa0028160:CDS | 40.0% | |
| CATGTGCCTGCATAAAACAA+GGG | + | chr1_1:52959678-52959697 | None:intergenic | 40.0% | |
| !!! | CTTGTTTTATGCAGGCACAT+GGG | - | chr1_1:52959677-52959696 | Msa0028160:CDS | 40.0% |
| ! | GGATTGTGAGTCTAAAGTGT+AGG | - | chr1_1:52959875-52959894 | Msa0028160:CDS | 40.0% |
| GGCATATTATCGTGGTGTAT+TGG | - | chr1_1:52959935-52959954 | Msa0028160:CDS | 40.0% | |
| ! | TTATCGTGGTGTATTGGTGT+TGG | - | chr1_1:52959941-52959960 | Msa0028160:intron | 40.0% |
| CAATTGTCGTATTTAGGGAC+TGG | + | chr1_1:52959980-52959999 | None:intergenic | 40.0% | |
| CAGTCCCTAAATACGACAAT+TGG | - | chr1_1:52959978-52959997 | Msa0028160:intron | 40.0% | |
| AATCTCTTGTGTAGGAGTTG+TGG | - | chr1_1:52960111-52960130 | Msa0028160:CDS | 40.0% | |
| CACATAGTTAGGCAGTCTTA+CGG | - | chr1_1:52960413-52960432 | Msa0028160:CDS | 40.0% | |
| !! | GATATGGTGTTGTGTGTCAA+AGG | + | chr1_1:52960660-52960679 | None:intergenic | 40.0% |
| GGCTATTGTAGTGATTCTTG+AGG | + | chr1_1:52960727-52960746 | None:intergenic | 40.0% | |
| GAAATTTAGAAAGGAAGGGG+CGG | + | chr1_1:52960835-52960854 | None:intergenic | 40.0% | |
| CTTCTTTCTTTCTGTGTTGG+AGG | - | chr1_1:52960955-52960974 | Msa0028160:CDS | 40.0% | |
| ! | TCCCCAAAATGATGGAATGA+GGG | + | chr1_1:52960985-52961004 | None:intergenic | 40.0% |
| ! | TTCCCCAAAATGATGGAATG+AGG | + | chr1_1:52960986-52961005 | None:intergenic | 40.0% |
| TAGGAGTAATTGGAGGAAGA+AGG | - | chr1_1:52961095-52961114 | Msa0028160:CDS | 40.0% | |
| GGAAGAAGGAATTTAGCTAG+TGG | - | chr1_1:52961109-52961128 | Msa0028160:CDS | 40.0% | |
| AAGGAATTTAGCTAGTGGCT+TGG | - | chr1_1:52961114-52961133 | Msa0028160:CDS | 40.0% | |
| ! | TTTGCCACAAAGTGTTCTAG+AGG | - | chr1_1:52961147-52961166 | Msa0028160:exon | 40.0% |
| !! | GATTCCTCTAGAACACTTTG+TGG | + | chr1_1:52961154-52961173 | None:intergenic | 40.0% |
| CCTCACCACTCAATAAGAGA+AGG | + | chr1_1:52957934-52957953 | None:intergenic | 45.0% | |
| CCTTCTCTTATTGAGTGGTG+AGG | - | chr1_1:52957931-52957950 | Msa0028160:CDS | 45.0% | |
| CATCACTGCCTATACCAACA+AGG | - | chr1_1:52958017-52958036 | Msa0028160:intron | 45.0% | |
| ATGAGGTCATTCACCCTTGT+TGG | + | chr1_1:52958034-52958053 | None:intergenic | 45.0% | |
| ACAAGGGTGAATGACCTCAT+TGG | - | chr1_1:52958034-52958053 | Msa0028160:intron | 45.0% | |
| GCAATGTCAACCTTCCAATG+AGG | + | chr1_1:52958051-52958070 | None:intergenic | 45.0% | |
| GTTAGTGAACAATGCTGCTG+CGG | - | chr1_1:52958087-52958106 | Msa0028160:intron | 45.0% | |
| TAACCTTTGATCCCAACCCT+TGG | + | chr1_1:52958115-52958134 | None:intergenic | 45.0% | |
| GGATCAAAGGTTATGAGTGG+TGG | - | chr1_1:52958122-52958141 | Msa0028160:intron | 45.0% | |
| ! | AGCATTGAATGAAGCAACGG+TGG | + | chr1_1:52958239-52958258 | None:intergenic | 45.0% |
| ACGTAGCGGTAATAATGTGC+AGG | - | chr1_1:52958356-52958375 | Msa0028160:intron | 45.0% | |
| !! | ACATTTTTAGGGACCCACGA+TGG | - | chr1_1:52958451-52958470 | Msa0028160:intron | 45.0% |
| !! | CATTTTTAGGGACCCACGAT+GGG | - | chr1_1:52958452-52958471 | Msa0028160:intron | 45.0% |
| !! | ATTTTTAGGGACCCACGATG+GGG | - | chr1_1:52958453-52958472 | Msa0028160:intron | 45.0% |
| TGCTAGAATTGGATCCTCAC+CGG | + | chr1_1:52958496-52958515 | None:intergenic | 45.0% | |
| CTGTAGTCCTCTCACATAAC+TGG | + | chr1_1:52958532-52958551 | None:intergenic | 45.0% | |
| CAGTTATGTGAGAGGACTAC+AGG | - | chr1_1:52958530-52958549 | Msa0028160:intron | 45.0% | |
| TACAGGGAACAGACAGTAGT+CGG | - | chr1_1:52958547-52958566 | Msa0028160:intron | 45.0% | |
| AGACAGTAGTCGGTTAAAGG+TGG | - | chr1_1:52958557-52958576 | Msa0028160:intron | 45.0% | |
| ! | GCCATTTAGGATGTGTGTGA+AGG | - | chr1_1:52958870-52958889 | Msa0028160:intron | 45.0% |
| GTGTGTGAAGGAAGGTAATG+TGG | - | chr1_1:52958882-52958901 | Msa0028160:intron | 45.0% | |
| TGCTGACCCCAATCTTCTAA+AGG | - | chr1_1:52958951-52958970 | Msa0028160:intron | 45.0% | |
| GCTGACCCCAATCTTCTAAA+GGG | - | chr1_1:52958952-52958971 | Msa0028160:intron | 45.0% | |
| AGGGAACAATTCGTGGTCAA+TGG | - | chr1_1:52958971-52958990 | Msa0028160:intron | 45.0% | |
| GTGGTCAATGGCGTCTTAAT+GGG | - | chr1_1:52958983-52959002 | Msa0028160:intron | 45.0% | |
| CTAGCCTGCTTTAATGGCAT+CGG | + | chr1_1:52959180-52959199 | None:intergenic | 45.0% | |
| TGGGTATGTTGTGCAAGGAA+AGG | + | chr1_1:52959342-52959361 | None:intergenic | 45.0% | |
| CTCTTGAAGCTGCAAGACAA+GGG | - | chr1_1:52959529-52959548 | Msa0028160:CDS | 45.0% | |
| ! | CGATGATTTTTCGTGGAGAG+AGG | + | chr1_1:52959588-52959607 | None:intergenic | 45.0% |
| ACTATGATCGGCAACTATGC+TGG | - | chr1_1:52959648-52959667 | Msa0028160:CDS | 45.0% | |
| CCATGTGCCTGCATAAAACA+AGG | + | chr1_1:52959679-52959698 | None:intergenic | 45.0% | |
| !!! | CCTTGTTTTATGCAGGCACA+TGG | - | chr1_1:52959676-52959695 | Msa0028160:CDS | 45.0% |
| GGCAATTGAAACCTGCAATC+TGG | - | chr1_1:52960069-52960088 | Msa0028160:CDS | 45.0% | |
| TGGTTGGATGAGCACATTCT+GGG | + | chr1_1:52960395-52960414 | None:intergenic | 45.0% | |
| GCTCATCCAACCACATAGTT+AGG | - | chr1_1:52960402-52960421 | Msa0028160:CDS | 45.0% | |
| AGACTGCCTAACTATGTGGT+TGG | + | chr1_1:52960411-52960430 | None:intergenic | 45.0% | |
| CGTAAGACTGCCTAACTATG+TGG | + | chr1_1:52960415-52960434 | None:intergenic | 45.0% | |
| CTACTAAGAACAGTTGGGCA+TGG | + | chr1_1:52960748-52960767 | None:intergenic | 45.0% | |
| !! | CGGTTGGCTTCTAAAATGGA+GGG | + | chr1_1:52960815-52960834 | None:intergenic | 45.0% |
| ! | CAAAATGATGGAATGAGGGG+CGG | + | chr1_1:52960981-52961000 | None:intergenic | 45.0% |
| ! | GCCCCTCATTCCATCATTTT+GGG | - | chr1_1:52960980-52960999 | Msa0028160:CDS | 45.0% |
| ! | CCCCAAAATGATGGAATGAG+GGG | + | chr1_1:52960984-52961003 | None:intergenic | 45.0% |
| ! | CCCCTCATTCCATCATTTTG+GGG | - | chr1_1:52960981-52961000 | Msa0028160:CDS | 45.0% |
| ! | TTTAGCTAGTGGCTTGGAGT+TGG | - | chr1_1:52961120-52961139 | Msa0028160:CDS | 45.0% |
| GGCAGTGATGCCTTGCAAAA+TGG | + | chr1_1:52958007-52958026 | None:intergenic | 50.0% | |
| GGGTGAATGACCTCATTGGA+AGG | - | chr1_1:52958038-52958057 | Msa0028160:intron | 50.0% | |
| GTTCCAAGGGTTGGGATCAA+AGG | - | chr1_1:52958109-52958128 | Msa0028160:intron | 50.0% | |
| AGGTTATGAGTGGTGGTCAG+AGG | - | chr1_1:52958129-52958148 | Msa0028160:intron | 50.0% | |
| GGAGTTTCAAATGTGGGACC+AGG | - | chr1_1:52958160-52958179 | Msa0028160:intron | 50.0% | |
| GTGGGACCAGGAACTAAGTT+TGG | - | chr1_1:52958172-52958191 | Msa0028160:intron | 50.0% | |
| GGACCAGGAACTAAGTTTGG+TGG | - | chr1_1:52958175-52958194 | Msa0028160:intron | 50.0% | |
| TGGCCACCAAACTTAGTTCC+TGG | + | chr1_1:52958181-52958200 | None:intergenic | 50.0% | |
| GATGACTTGAGGGAAGCTAG+TGG | + | chr1_1:52958215-52958234 | None:intergenic | 50.0% | |
| GCTTCCTTGTGGGAAGCAAT+TGG | - | chr1_1:52958256-52958275 | Msa0028160:intron | 50.0% | |
| CCTTGTGGGAAGCAATTGGA+CGG | - | chr1_1:52958260-52958279 | Msa0028160:intron | 50.0% | |
| CTTGTGGGAAGCAATTGGAC+GGG | - | chr1_1:52958261-52958280 | Msa0028160:intron | 50.0% | |
| GAAGCAAGGGCGATGTACAA+CGG | - | chr1_1:52958390-52958409 | Msa0028160:intron | 50.0% | |
| ATGTACAACGGAGGAATGGC+TGG | - | chr1_1:52958402-52958421 | Msa0028160:intron | 50.0% | |
| TGTACAACGGAGGAATGGCT+GGG | - | chr1_1:52958403-52958422 | Msa0028160:intron | 50.0% | |
| ! | GAATGGCTGGGTTGACATAC+TGG | - | chr1_1:52958415-52958434 | Msa0028160:intron | 50.0% |
| GCTAGAATTGGATCCTCACC+GGG | + | chr1_1:52958495-52958514 | None:intergenic | 50.0% | |
| GGTGAGGATCCAATTCTAGC+AGG | - | chr1_1:52958495-52958514 | Msa0028160:intron | 50.0% | |
| TACGCTGCCAGTTATGTGAG+AGG | - | chr1_1:52958522-52958541 | Msa0028160:intron | 50.0% | |
| !! | CCAAAAGTGTTGGACTGGAC+TGG | + | chr1_1:52958727-52958746 | None:intergenic | 50.0% |
| ! | CCAGTCCAGTCCAACACTTT+TGG | - | chr1_1:52958724-52958743 | Msa0028160:intron | 50.0% |
| CTACATGCAGGTTAGCAAGC+AGG | - | chr1_1:52958825-52958844 | Msa0028160:intron | 50.0% | |
| GATTGGGGTCAGCACAAGTA+GGG | + | chr1_1:52958945-52958964 | None:intergenic | 50.0% | |
| AGATTGGGGTCAGCACAAGT+AGG | + | chr1_1:52958946-52958965 | None:intergenic | 50.0% | |
| CGTGGTCAATGGCGTCTTAA+TGG | - | chr1_1:52958982-52959001 | Msa0028160:intron | 50.0% | |
| GAGCCATCTGCTCAACCATA+CGG | - | chr1_1:52959459-52959478 | Msa0028160:CDS | 50.0% | |
| TTGCCGTATGGTTGAGCAGA+TGG | + | chr1_1:52959465-52959484 | None:intergenic | 50.0% | |
| TGCACACATCAGTTGGACCA+AGG | + | chr1_1:52959488-52959507 | None:intergenic | 50.0% | |
| GTTGGAGTGCACACATCAGT+TGG | + | chr1_1:52959495-52959514 | None:intergenic | 50.0% | |
| CACTCCAACTCACCAAGACT+TGG | - | chr1_1:52959506-52959525 | Msa0028160:CDS | 50.0% | |
| AGAGCCAAGTCTTGGTGAGT+TGG | + | chr1_1:52959513-52959532 | None:intergenic | 50.0% | |
| CAGCTTCAAGAGCCAAGTCT+TGG | + | chr1_1:52959521-52959540 | None:intergenic | 50.0% | |
| GCTCTTGAAGCTGCAAGACA+AGG | - | chr1_1:52959528-52959547 | Msa0028160:CDS | 50.0% | |
| CATCGTACTGTGGCAGTCAT+TGG | - | chr1_1:52959603-52959622 | Msa0028160:CDS | 50.0% | |
| TGATCGGCAACTATGCTGGT+AGG | - | chr1_1:52959652-52959671 | Msa0028160:CDS | 50.0% | |
| !!! | GGTAGGCCCTTGTTTTATGC+AGG | - | chr1_1:52959669-52959688 | Msa0028160:CDS | 50.0% |
| GTGGTTGGATGAGCACATTC+TGG | + | chr1_1:52960396-52960415 | None:intergenic | 50.0% | |
| ATTGAGAGAGGGAGCCGATA+TGG | + | chr1_1:52960676-52960695 | None:intergenic | 50.0% | |
| !! | GCGGTTGGCTTCTAAAATGG+AGG | + | chr1_1:52960816-52960835 | None:intergenic | 50.0% |
| TTTAGAAAGGAAGGGGCGGT+TGG | + | chr1_1:52960831-52960850 | None:intergenic | 50.0% | |
| ! | CGCCCCTCATTCCATCATTT+TGG | - | chr1_1:52960979-52960998 | Msa0028160:CDS | 50.0% |
| ACAATGCTGCTGCGGTTCCA+AGG | - | chr1_1:52958095-52958114 | Msa0028160:intron | 55.0% | |
| CAATGCTGCTGCGGTTCCAA+GGG | - | chr1_1:52958096-52958115 | Msa0028160:intron | 55.0% | |
| !! | TGGTGGTCAGAGGCACTTCA+TGG | - | chr1_1:52958139-52958158 | Msa0028160:intron | 55.0% |
| AGCTAGTGGCAGCTGGGAAT+TGG | + | chr1_1:52958201-52958220 | None:intergenic | 55.0% | |
| CAACGGTGGCGATGACTTGA+GGG | + | chr1_1:52958225-52958244 | None:intergenic | 55.0% | |
| CCGTCCAATTGCTTCCCACA+AGG | + | chr1_1:52958263-52958282 | None:intergenic | 55.0% | |
| AGGTTGCTTCCGACGAAGCA+AGG | - | chr1_1:52958376-52958395 | Msa0028160:intron | 55.0% | |
| GGTTGCTTCCGACGAAGCAA+GGG | - | chr1_1:52958377-52958396 | Msa0028160:intron | 55.0% | |
| GTACATCGCCCTTGCTTCGT+CGG | + | chr1_1:52958388-52958407 | None:intergenic | 55.0% | |
| GGCGATGTACAACGGAGGAA+TGG | - | chr1_1:52958398-52958417 | Msa0028160:intron | 55.0% | |
| GCAGGTTAGCAAGCAGGACA+TGG | - | chr1_1:52958831-52958850 | Msa0028160:intron | 55.0% | |
| GCTGCCGATGCCATTAAAGC+AGG | - | chr1_1:52959173-52959192 | Msa0028160:intron | 55.0% | |
| GCTCAACCATACGGCAACCT+TGG | - | chr1_1:52959468-52959487 | Msa0028160:CDS | 55.0% | |
| GTTGGACCAAGGTTGCCGTA+TGG | + | chr1_1:52959477-52959496 | None:intergenic | 55.0% | |
| !! | GGGGCGGTTGGCTTCTAAAA+TGG | + | chr1_1:52960819-52960838 | None:intergenic | 55.0% |
| CTGCTGCGGTTCCAAGGGTT+GGG | - | chr1_1:52958101-52958120 | Msa0028160:intron | 60.0% | |
| GAGGGAAGCTAGTGGCAGCT+GGG | + | chr1_1:52958207-52958226 | None:intergenic | 60.0% | |
| TGAGGGAAGCTAGTGGCAGC+TGG | + | chr1_1:52958208-52958227 | None:intergenic | 60.0% | |
| GCAACGGTGGCGATGACTTG+AGG | + | chr1_1:52958226-52958245 | None:intergenic | 60.0% | |
| GCAAGGGCGATGTACAACGG+AGG | - | chr1_1:52958393-52958412 | Msa0028160:intron | 60.0% | |
| ! | GCATCGGCAGCAGCTTCTTC+TGG | + | chr1_1:52959164-52959183 | None:intergenic | 60.0% |
| GCTGCTGCGGTTCCAAGGGT+TGG | - | chr1_1:52958100-52958119 | Msa0028160:intron | 65.0% | |
| CCTGTCCACGACCCCATCGT+GGG | + | chr1_1:52958467-52958486 | None:intergenic | 65.0% | |
| TCCTGTCCACGACCCCATCG+TGG | + | chr1_1:52958468-52958487 | None:intergenic | 65.0% | |
| GGTCGTGGACAGGAGACTCC+CGG | - | chr1_1:52958474-52958493 | Msa0028160:intron | 65.0% | |
| TGGACAGGAGACTCCCGGTG+AGG | - | chr1_1:52958479-52958498 | Msa0028160:intron | 65.0% | |
| AGGGACCCACGATGGGGTCG+TGG | - | chr1_1:52958459-52958478 | Msa0028160:intron | 70.0% | |
| CCCACGATGGGGTCGTGGAC+AGG | - | chr1_1:52958464-52958483 | Msa0028160:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52957854 | 52961198 | 52957854 | ID=Msa0028160;Name=Msa0028160 |
| chr1_1 | mRNA | 52957854 | 52961198 | 52957854 | ID=Msa0028160-mRNA-1;Parent=Msa0028160;Name=Msa0028160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=45|0.8|0.66|0.83|1|1|6|0|460 |
| chr1_1 | exon | 52957854 | 52957954 | 52957854 | ID=Msa0028160-mRNA-1:exon:15575;Parent=Msa0028160-mRNA-1 |
| chr1_1 | exon | 52959383 | 52959733 | 52959383 | ID=Msa0028160-mRNA-1:exon:15574;Parent=Msa0028160-mRNA-1 |
| chr1_1 | exon | 52959858 | 52959955 | 52959858 | ID=Msa0028160-mRNA-1:exon:15573;Parent=Msa0028160-mRNA-1 |
| chr1_1 | exon | 52960048 | 52960217 | 52960048 | ID=Msa0028160-mRNA-1:exon:15572;Parent=Msa0028160-mRNA-1 |
| chr1_1 | exon | 52960396 | 52960674 | 52960396 | ID=Msa0028160-mRNA-1:exon:15571;Parent=Msa0028160-mRNA-1 |
| chr1_1 | exon | 52960770 | 52961198 | 52960770 | ID=Msa0028160-mRNA-1:exon:15570;Parent=Msa0028160-mRNA-1 |
| chr1_1 | five_prime_UTR | 52961154 | 52961198 | 52961154 | ID=Msa0028160-mRNA-1:five_prime_utr;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52960770 | 52961153 | 52960770 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52960396 | 52960674 | 52960396 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52960048 | 52960217 | 52960048 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52959858 | 52959955 | 52959858 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52959383 | 52959733 | 52959383 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| chr1_1 | CDS | 52957854 | 52957954 | 52957854 | ID=Msa0028160-mRNA-1:cds;Parent=Msa0028160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
