AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0082000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082000 MtrunA17_Chr1g0194841 96.340 765 28 0 1 765 1 765 0.0 1535
Msa0082000 MtrunA17_Chr7g0269871 82.092 765 134 2 3 765 8 771 0.0 1317
Msa0082000 MtrunA17_Chr2g0294751 68.105 765 229 6 5 764 7 761 0.0 1075
Msa0082000 MtrunA17_Chr2g0278761 56.430 762 320 5 4 756 16 774 0.0 893
Msa0082000 MtrunA17_Chr4g0050591 56.671 757 316 5 8 755 19 772 0.0 885
Msa0082000 MtrunA17_Chr1g0207281 53.735 763 330 7 2 747 19 775 0.0 822
Msa0082000 MtrunA17_Chr5g0411571 46.991 781 380 11 3 756 8 781 0.0 752
Msa0082000 MtrunA17_Chr3g0115601 47.871 775 371 10 5 755 9 774 0.0 741
Msa0082000 MtrunA17_Chr5g0425471 46.760 787 374 12 3 755 5 780 0.0 723
Msa0082000 MtrunA17_Chr5g0425431 46.008 789 381 11 1 755 1 778 0.0 718
Msa0082000 MtrunA17_Chr5g0425451 46.591 792 378 12 3 760 5 785 0.0 714
Msa0082000 MtrunA17_Chr5g0425531 46.113 759 374 12 22 755 35 783 0.0 698
Msa0082000 MtrunA17_Chr6g0461231 25.547 685 366 26 9 618 6 621 3.69e-34 139
Msa0082000 MtrunA17_Chr3g0104081 24.588 667 372 29 27 621 12 619 3.83e-33 135
Msa0082000 MtrunA17_Chr6g0461221 23.894 678 364 26 23 618 15 622 8.04e-32 132
Msa0082000 MtrunA17_Chr5g0429581 26.527 573 322 26 81 618 93 601 1.51e-31 130
Msa0082000 MtrunA17_Chr6g0461191 24.143 671 367 25 25 618 16 621 1.06e-30 128
Msa0082000 MtrunA17_Chr7g0253561 24.186 645 361 27 44 618 11 597 5.93e-28 119
Msa0082000 MtrunA17_Chr6g0461211 23.468 669 366 26 29 618 20 621 9.68e-28 119
Msa0082000 MtrunA17_Chr3g0118971 23.780 635 377 24 3 574 5 595 3.84e-25 111
Msa0082000 MtrunA17_Chr2g0292341 23.500 600 353 21 43 574 36 597 1.02e-23 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082000 AT1G02640.1 73.499 766 196 3 3 765 7 768 0.0 1184
Msa0082000 AT5G49360.1 69.974 766 217 9 2 758 12 773 0.0 1081
Msa0082000 AT5G64570.1 58.431 765 301 7 5 756 23 783 0.0 907
Msa0082000 AT5G09730.1 56.469 742 310 6 23 755 34 771 0.0 863
Msa0082000 AT3G19620.1 55.405 740 317 5 18 747 22 758 0.0 863
Msa0082000 AT5G64570.2 59.141 629 244 5 137 756 1 625 0.0 769
Msa0082000 AT5G64570.3 63.636 572 199 5 5 569 23 592 0.0 737
Msa0082000 AT5G10560.1 45.477 796 386 10 3 756 2 791 0.0 729
Msa0082000 AT1G78060.1 47.233 741 372 9 22 748 23 758 0.0 725
Msa0082000 AT5G09700.1 53.862 479 212 4 279 751 45 520 0.0 529
Msa0082000 AT3G47000.1 26.711 599 336 23 43 574 16 578 3.91e-36 145
Msa0082000 AT3G47050.1 25.723 622 343 24 29 576 2 578 9.06e-35 141
Msa0082000 AT3G47040.4 23.231 650 370 26 43 621 16 607 2.18e-32 134
Msa0082000 AT3G47010.1 24.463 605 346 25 43 576 17 581 4.86e-31 129
Msa0082000 AT3G47010.2 23.881 603 351 23 43 576 17 580 4.81e-30 126
Msa0082000 AT3G47000.3 28.205 429 235 17 43 417 16 425 1.69e-28 120
Msa0082000 AT3G62710.1 25.581 559 322 24 102 618 143 649 4.18e-28 120
Msa0082000 AT3G47040.1 22.370 675 370 27 43 621 16 632 4.67e-28 120
Msa0082000 AT5G04885.2 25.126 597 344 20 44 574 54 613 1.97e-27 119
Msa0082000 AT5G04885.3 25.126 597 344 20 44 574 37 596 2.88e-27 118
Msa0082000 AT5G04885.1 25.126 597 344 20 44 574 37 596 2.88e-27 118
Msa0082000 AT3G47040.3 25.581 430 245 17 43 417 16 425 2.04e-25 110
Msa0082000 AT5G20950.2 24.424 651 369 28 35 618 24 618 2.77e-25 112
Msa0082000 AT5G20950.1 24.424 651 369 28 35 618 24 618 2.77e-25 112
Msa0082000 AT5G20950.3 24.349 653 367 28 35 618 102 696 3.06e-25 112
Msa0082000 AT3G47010.4 25.951 447 256 18 43 434 17 443 1.40e-24 108
Msa0082000 AT3G47000.2 26.464 427 254 17 180 574 3 401 1.07e-21 99.4
Msa0082000 AT5G20940.1 23.270 636 375 22 43 617 38 621 3.84e-21 99.0
Msa0082000 AT3G47040.2 22.672 494 295 20 164 621 198 640 3.28e-20 95.9
Msa0082000 AT3G47010.3 24.088 411 256 15 190 576 24 402 6.35e-20 93.6
Msa0082000 AT3G47050.2 25.000 384 212 12 29 356 2 365 4.06e-19 90.9

Find 240 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTATGATCTTGATAAT+TGG 0.176588 1_2:+60765648 Msa0082000:CDS
ATCTTCTTGTCTTTCCAAAA+TGG 0.183482 1_2:+60764926 Msa0082000:exon
GTGTAACTAGCCTGCTTTAA+TGG 0.213949 1_2:-60766234 None:intergenic
GATGAGGATTGAATCCATTT+TGG 0.215803 1_2:-60764940 None:intergenic
ACACGTTCAATGTGCCATTT+AGG 0.256161 1_2:+60765908 Msa0082000:CDS
AATCTAATATGTTCTGTCTT+TGG 0.259663 1_2:-60768519 None:intergenic
TGTTCTTACAATCAGGTTAA+TGG 0.264019 1_2:+60765967 Msa0082000:CDS
TGCAATGATGATAAGCAATT+TGG 0.274323 1_2:+60767054 Msa0082000:CDS
TTGAGTGTGGTTGATAAGTC+TGG 0.284224 1_2:+60768337 Msa0082000:CDS
GTAGGGGTTGTTGCAATTCT+TGG 0.292546 1_2:+60768572 Msa0082000:three_prime_UTR
AACATCAATGTCAAGTCTAA+TGG 0.302466 1_2:-60768146 None:intergenic
TGTAATTGTAAGATTGATAA+TGG 0.306789 1_2:+60768759 Msa0082000:three_prime_UTR
ACCGGAACTGACACCACTTT+TGG 0.310123 1_2:-60768049 None:intergenic
TCCTTCACACACATCCTAAA+TGG 0.313797 1_2:-60765922 None:intergenic
CAAACATTCCTAACCTCATT+TGG 0.313898 1_2:-60766480 None:intergenic
GCATCAGCAGCAGCTTCTTC+TGG 0.324607 1_2:-60766212 None:intergenic
CTCGAGAGGCCCAACCATTT+TGG 0.326495 1_2:+60767221 Msa0082000:CDS
TTCTAAATAATCTCAATATA+TGG 0.327660 1_2:+60768490 Msa0082000:three_prime_UTR
GCATGCCACATTCGCACAAC+CGG 0.335024 1_2:-60767034 None:intergenic
GAAGATGAGTGTATAGCTTT+TGG 0.338709 1_2:-60764909 None:intergenic
ATTCTTGGAGAAGAGATTAT+AGG 0.342911 1_2:+60768587 Msa0082000:three_prime_UTR
AACAGACAGTAGTCGGTTAA+AGG 0.343289 1_2:+60765601 Msa0082000:CDS
GAATGGCTGGGTTGACATAC+TGG 0.348172 1_2:+60765462 Msa0082000:CDS
AGCTAGTGGCAGCTGGGAAT+TGG 0.353343 1_2:-60765244 None:intergenic
GATTGTTACAGGTTTGGATT+TGG 0.354260 1_2:+60766357 Msa0082000:intron
AGGACTGGTTTACTTCTTCC+TGG 0.354806 1_2:+60767162 Msa0082000:CDS
TCATTCACCCTTGTTGGTAT+AGG 0.360034 1_2:-60765071 None:intergenic
TTGGCAAAAGTTATATCTAT+AGG 0.361321 1_2:-60767261 None:intergenic
ACAAGTCCACTACAAGGAAT+AGG 0.363402 1_2:+60766985 Msa0082000:CDS
TTAACCGAAACTGATGTAAA+TGG 0.366495 1_2:+60766433 Msa0082000:CDS
AGCACCATTTACATCAGTTT+CGG 0.369750 1_2:-60766437 None:intergenic
AATTGTTCCCTTTAGAAGAT+TGG 0.370516 1_2:-60766010 None:intergenic
TGGCCACCAAACTTAGTTCC+TGG 0.373919 1_2:-60765224 None:intergenic
ATTGTTCCCTTTAGAAGATT+GGG 0.374956 1_2:-60766009 None:intergenic
GGCAGTGATGCCTTGCAAAA+TGG 0.376149 1_2:-60765050 None:intergenic
CATCGTACTGTGGCAGTCAT+TGG 0.380479 1_2:+60766652 Msa0082000:CDS
GTCTTGTGGGCTGGTTATCC+TGG 0.387757 1_2:+60767306 Msa0082000:CDS
TACAATTCGAGGATCATTCT+TGG 0.388170 1_2:-60767280 None:intergenic
CAAGTCCACTACAAGGAATA+GGG 0.388588 1_2:+60766986 Msa0082000:CDS
GCCATTGCGGATATATTGTT+TGG 0.389650 1_2:+60767345 Msa0082000:CDS
CGTGGTCAATGGCGTCTTGA+TGG 0.393875 1_2:+60766033 Msa0082000:CDS
ACCAGTCCTATCTACCATTT+CGG 0.395118 1_2:-60767148 None:intergenic
GCGTATTTACCTGCTAGAAT+TGG 0.397933 1_2:-60765551 None:intergenic
CTGTAGTCCTCTCACATAAC+TGG 0.401956 1_2:-60765576 None:intergenic
AGTGACAGTAGCATTAGAAT+TGG 0.406208 1_2:-60766677 None:intergenic
GCTTCCTTGTGGGAAGCAAT+TGG 0.410013 1_2:+60765302 Msa0082000:CDS
TTCATTCAATGCTTCCTTGT+GGG 0.412773 1_2:+60765292 Msa0082000:CDS
GTAGTGTATCCATTTGGTTA+TGG 0.416901 1_2:+60767986 Msa0082000:CDS
TGTGATGTGTTCTTACAATC+AGG 0.419127 1_2:+60765960 Msa0082000:CDS
TGAGGGAAGCTAGTGGCAGC+TGG 0.425971 1_2:-60765251 None:intergenic
ACCAGACATTAAGACCAAAA+TGG 0.427459 1_2:-60767235 None:intergenic
ATGTACAACGGAGGAATGGC+TGG 0.431552 1_2:+60765449 Msa0082000:CDS
AAGAATGATCCTCGAATTGT+AGG 0.432895 1_2:+60767282 Msa0082000:CDS
CCCACGATGGGGTCGTGGAC+AGG 0.434758 1_2:+60765511 Msa0082000:CDS
TATCAGATTGTGACTCTGTT+GGG 0.436467 1_2:+60766156 Msa0082000:CDS
GTGGGACCAGGAACTAAGTT+TGG 0.438000 1_2:+60765218 Msa0082000:CDS
CTGCTGCGGTTCCAAGGGTT+GGG 0.439330 1_2:+60765147 Msa0082000:CDS
GCAAAATGGTAAGTTCTTTG+TGG 0.441477 1_2:-60765036 None:intergenic
AGATGGTACTAACACTTTGT+TGG 0.445284 1_2:+60768186 Msa0082000:CDS
ATGAGGTCATTCACCCTTGT+TGG 0.447171 1_2:-60765077 None:intergenic
CACCAGCAGGTAATGGTCAA+TGG 0.449857 1_2:+60768221 Msa0082000:CDS
TGGTGGTCAGAGGCACTTCA+TGG 0.450444 1_2:+60765185 Msa0082000:CDS
CAGTTATGTGAGAGGACTAC+AGG 0.452877 1_2:+60765577 Msa0082000:CDS
GCTGCTGCGGTTCCAAGGGT+TGG 0.456048 1_2:+60765146 Msa0082000:CDS
CCTTGTGGGTACCATGTCAT+AGG 0.459058 1_2:-60767869 None:intergenic
AAGGTTGACATTGCAAGAAA+AGG 0.459521 1_2:+60765103 Msa0082000:CDS
AGCTCATCCACAGGGTACCC+TGG 0.460856 1_2:+60767935 Msa0082000:CDS
ATCCGCAATGGCAGCACCAC+CGG 0.461366 1_2:-60767334 None:intergenic
AACAGTAGCATCCGCTTGAC+GGG 0.464308 1_2:-60767094 None:intergenic
CTCGAATTGTAGGCGTCTTG+TGG 0.466486 1_2:+60767292 Msa0082000:CDS
TGCTGACCCCAATCTTCTAA+AGG 0.467676 1_2:+60766002 Msa0082000:CDS
TATTTCCCTATTCCTTGTAG+TGG 0.467699 1_2:-60766991 None:intergenic
ACCAAAAGTGGTGTCAGTTC+CGG 0.469643 1_2:+60768048 Msa0082000:CDS
ATTGTAGGCGTCTTGTGGGC+TGG 0.469900 1_2:+60767297 Msa0082000:CDS
ACAGGTTTGGATTTGGATTG+TGG 0.471236 1_2:+60766364 Msa0082000:intron
GTCTATGTTACGATTAATGT+AGG 0.471767 1_2:+60768710 Msa0082000:three_prime_UTR
TCAGTCAATTGAGGCCGAAA+TGG 0.474480 1_2:+60767134 Msa0082000:CDS
GAGCCATCTGCTCAACCATA+TGG 0.476202 1_2:+60766508 Msa0082000:CDS
TTGAGGCCGAAATGGTAGAT+AGG 0.476400 1_2:+60767142 Msa0082000:CDS
GTGACAGTAGCATTAGAATT+GGG 0.478045 1_2:-60766676 None:intergenic
AAACAGTAGCATCCGCTTGA+CGG 0.478524 1_2:-60767095 None:intergenic
AGAGCTAAGTCTTGGTGAGT+TGG 0.479019 1_2:-60766559 None:intergenic
GCTGCTGATGCCATTAAAGC+AGG 0.484758 1_2:+60766224 Msa0082000:CDS
ACCAGCAGGTAATGGTCAAT+GGG 0.486567 1_2:+60768222 Msa0082000:CDS
ATTAGCTAGTGCACCAAAAG+TGG 0.486967 1_2:+60768036 Msa0082000:CDS
CTTACAGTCCAAATGAGGTT+AGG 0.488722 1_2:+60766472 Msa0082000:CDS
ACAATGCTGCTGCGGTTCCA+AGG 0.489142 1_2:+60765141 Msa0082000:CDS
CTTCTAAAGGGAACAATTCG+TGG 0.489838 1_2:+60766015 Msa0082000:CDS
ACGATCAAATAATGTATGGT+AGG 0.490949 1_2:+60768554 Msa0082000:three_prime_UTR
GGCCCGGTAGTGTATCCATT+TGG 0.492155 1_2:+60767980 Msa0082000:CDS
GTTGGACCAAGGTTGCCATA+TGG 0.493410 1_2:-60766523 None:intergenic
CTTTGCTAGTGCTATTTCCA+CGG 0.493645 1_2:-60768084 None:intergenic
TTGCCATATGGTTGAGCAGA+TGG 0.494209 1_2:-60766511 None:intergenic
GGACTGGTTTACTTCTTCCT+GGG 0.495062 1_2:+60767163 Msa0082000:CDS
AATGACGATCAAATAATGTA+TGG 0.495651 1_2:+60768550 Msa0082000:three_prime_UTR
TAAGATAATCCATAACCAAA+TGG 0.495998 1_2:-60767995 None:intergenic
CTTCATTCAATGCTTCCTTG+TGG 0.497472 1_2:+60765291 Msa0082000:CDS
CGATCAAATAATGTATGGTA+GGG 0.498376 1_2:+60768555 Msa0082000:three_prime_UTR
CCACGGCGGTGGCCGTCTAC+CGG 0.500155 1_2:-60768067 None:intergenic
ACTCGTTGCTGAGCCTTAGC+AGG 0.500218 1_2:-60768286 None:intergenic
CACAAGACGCCTACAATTCG+AGG 0.502278 1_2:-60767291 None:intergenic
AGGGAACAATTCGTGGTCAA+TGG 0.503217 1_2:+60766022 Msa0082000:CDS
CGAGCCCGGTTGTGCGAATG+TGG 0.504050 1_2:+60767029 Msa0082000:CDS
TCGAATTGTAGGCGTCTTGT+GGG 0.504658 1_2:+60767293 Msa0082000:CDS
TAGTGCTATTTCCACGGCGG+TGG 0.505295 1_2:-60768078 None:intergenic
ACTATGATCGGCAACTATGC+TGG 0.508582 1_2:+60766697 Msa0082000:CDS
GTGGTCAATGGCGTCTTGAT+GGG 0.510313 1_2:+60766034 Msa0082000:CDS
GGGTACCCTGTGGATGAGCT+TGG 0.513477 1_2:-60767932 None:intergenic
TGCTAGAATTGGATCCTCAC+CGG 0.513683 1_2:-60765540 None:intergenic
ACAAGGTCTTGTTGATGCCC+AGG 0.514789 1_2:-60767180 None:intergenic
GCTGACCCCAATCTTCTAAA+GGG 0.516568 1_2:+60766003 Msa0082000:CDS
GTTCCAAGGGTTGGGATCAA+AGG 0.517619 1_2:+60765155 Msa0082000:CDS
CAGCTTCAAGAGCTAAGTCT+TGG 0.517691 1_2:-60766567 None:intergenic
GACATTAAGACCAAAATGGT+TGG 0.518340 1_2:-60767231 None:intergenic
TAACCAAATGGATACACTAC+CGG 0.520324 1_2:-60767983 None:intergenic
ACATTAAGACCAAAATGGTT+GGG 0.522088 1_2:-60767230 None:intergenic
TGAGTGTGGTTGATAAGTCT+GGG 0.522755 1_2:+60768338 Msa0082000:CDS
GCTGGTTATCCTGGTCAAGC+CGG 0.527403 1_2:+60767315 Msa0082000:CDS
TTTCTCCTTCTCTTATTGAG+TGG 0.531540 1_2:+60764972 Msa0082000:CDS
TAACCTTTGATCCCAACCCT+TGG 0.532115 1_2:-60765158 None:intergenic
GTATCAGATTGTGACTCTGT+TGG 0.532355 1_2:+60766155 Msa0082000:CDS
CAACGGTGGTGATGACTTGA+GGG 0.533858 1_2:-60765268 None:intergenic
AATGCTACTGTCACTATGAT+CGG 0.536100 1_2:+60766685 Msa0082000:CDS
GCTCTTGAAGCTGCAAGACA+AGG 0.536337 1_2:+60766577 Msa0082000:CDS
TCAGTACCACCAGCAGGTAA+TGG 0.536648 1_2:+60768214 Msa0082000:CDS
TCATTACAAACCTGGGTTAG+CGG 0.538786 1_2:-60767370 None:intergenic
ACAAGGGTGAATGACCTCAT+TGG 0.540784 1_2:+60765080 Msa0082000:CDS
TCGCTTTCACTTTAATGCAA+AGG 0.541204 1_2:+60765682 Msa0082000:CDS
TCAACAAGACCTTGTTTCAA+AGG 0.542357 1_2:+60767188 Msa0082000:CDS
ATGAGGTTAGGAATGTTTGA+TGG 0.546650 1_2:+60766484 Msa0082000:CDS
CTGGCGTTGATGTATAATGT+TGG 0.548440 1_2:-60766193 None:intergenic
CCTTGTGGGAAGCAATTGGA+CGG 0.549327 1_2:+60765306 Msa0082000:CDS
GCTCATCCACAGGGTACCCT+GGG 0.549425 1_2:+60767936 Msa0082000:CDS
CCTTCTCTTATTGAGTGGTG+AGG 0.551148 1_2:+60764977 Msa0082000:CDS
AGACCTTGTTTCAAAGGTAG+CGG 0.551793 1_2:+60767194 Msa0082000:CDS
CCTGTCCACGACCCCATCGT+GGG 0.553753 1_2:-60765511 None:intergenic
AGGTTGCATCAGACGAAGCA+AGG 0.553887 1_2:+60765423 Msa0082000:intron
GAAAGTCTATGTTCCTGCTA+AGG 0.555151 1_2:+60768273 Msa0082000:CDS
CATGCCACATTCGCACAACC+GGG 0.556110 1_2:-60767033 None:intergenic
CAAATATGATGAACATCGTA+AGG 0.556163 1_2:-60768848 None:intergenic
AGGGACCCACGATGGGGTCG+TGG 0.557616 1_2:+60765506 Msa0082000:CDS
GCTCAACCATATGGCAACCT+TGG 0.559431 1_2:+60766517 Msa0082000:CDS
AGCTAATGTGTGAACAAAGT+TGG 0.559505 1_2:-60768020 None:intergenic
TGGGTATGTTGTGCAAGGAA+AGG 0.559911 1_2:-60766388 None:intergenic
GCAGCACCACCGGCTTGACC+AGG 0.560968 1_2:-60767324 None:intergenic
GGCAATGTACAACGGAGGAA+TGG 0.561330 1_2:+60765445 Msa0082000:CDS
GATAATGGTAATAAACATGT+GGG 0.561408 1_2:+60768774 Msa0082000:three_prime_UTR
AGCCGGTGGTGCTGCCATTG+CGG 0.565149 1_2:+60767332 Msa0082000:CDS
CTACATGCAGGTTAGCAAGC+AGG 0.567726 1_2:+60765876 Msa0082000:intron
ATGAGACCAAGCTCATCCAC+AGG 0.567760 1_2:+60767926 Msa0082000:CDS
AAGGTAGCGGCTGCCTCGAG+AGG 0.568465 1_2:+60767207 Msa0082000:CDS
GAGGGAAGCTAGTGGCAGCT+GGG 0.568859 1_2:-60765250 None:intergenic
TGATAATGGTAATAAACATG+TGG 0.572073 1_2:+60768773 Msa0082000:three_prime_UTR
CAATGCTGCTGCGGTTCCAA+GGG 0.573627 1_2:+60765142 Msa0082000:CDS
TTTAGAAGACATTCTAAATG+CGG 0.574761 1_2:-60768474 None:intergenic
GCCCATTGACCATTACCTGC+TGG 0.576424 1_2:-60768223 None:intergenic
CTTGTGGGAAGCAATTGGAC+GGG 0.577173 1_2:+60765307 Msa0082000:CDS
ATTGTGCTTCTTAAGAACAC+TGG 0.577447 1_2:+60766601 Msa0082000:CDS
GCTAGAATTGGATCCTCACC+GGG 0.579336 1_2:-60765539 None:intergenic
GCAGGTTAGCAAGCAGGACA+TGG 0.581137 1_2:+60765882 Msa0082000:intron
GATTGGGGTCAGCACAAGTA+GGG 0.582749 1_2:-60765993 None:intergenic
GCAAGGACTATTCACGAGCC+CGG 0.584280 1_2:+60767015 Msa0082000:CDS
TCACTTCAAGAACAAACACT+AGG 0.584597 1_2:+60768421 Msa0082000:CDS
AGATTGGGGTCAGCACAAGT+AGG 0.584959 1_2:-60765994 None:intergenic
CTTCATGGAGTTTCAAATGT+GGG 0.585312 1_2:+60765200 Msa0082000:CDS
TGGTTGATAAGTCTGGGACT+AGG 0.585602 1_2:+60768344 Msa0082000:CDS
GTGGTGTCAGTTCCGGTAGA+CGG 0.586306 1_2:+60768055 Msa0082000:CDS
AACCAAATGGATACACTACC+GGG 0.587998 1_2:-60767982 None:intergenic
GGTGAGGATCCAATTCTAGC+AGG 0.588795 1_2:+60765542 Msa0082000:CDS
CTCTTGAAGCTGCAAGACAA+GGG 0.591209 1_2:+60766578 Msa0082000:CDS
GGGACTAGGAGAATTCCAAT+GGG 0.591595 1_2:+60768358 Msa0082000:CDS
GCCGAAATGGTAGATAGGAC+TGG 0.592618 1_2:+60767147 Msa0082000:CDS
TCCTGTCCACGACCCCATCG+TGG 0.592950 1_2:-60765512 None:intergenic
TTGTTCCCTTTAGAAGATTG+GGG 0.593071 1_2:-60766008 None:intergenic
GGTCGTGGACAGGAGACTCC+CGG 0.595003 1_2:+60765521 Msa0082000:CDS
GGTTATCCTGGTCAAGCCGG+TGG 0.595636 1_2:+60767318 Msa0082000:CDS
CCGGTAGACGGCCACCGCCG+TGG 0.596564 1_2:+60768067 Msa0082000:CDS
TTTAGGATGTGTGTGAAGGA+AGG 0.597067 1_2:+60765925 Msa0082000:CDS
TGGGACTAGGAGAATTCCAA+TGG 0.597147 1_2:+60768357 Msa0082000:CDS
GGAGAAATACAATGGTGATG+AGG 0.597505 1_2:-60764956 None:intergenic
ATCAGATTGTGACTCTGTTG+GGG 0.597836 1_2:+60766157 Msa0082000:CDS
GGGATTGGATCAGTCAATTG+AGG 0.599415 1_2:+60767125 Msa0082000:CDS
TATGATCTTGATAATTGGAA+TGG 0.601843 1_2:+60765653 Msa0082000:CDS
GTGTTCTCAGTACCACCAGC+AGG 0.602373 1_2:+60768208 Msa0082000:CDS
GGAGTTTCAAATGTGGGACC+AGG 0.604839 1_2:+60765206 Msa0082000:CDS
TCCAAACAATATATCCGCAA+TGG 0.605705 1_2:-60767346 None:intergenic
TTGTTTGGAACCGCTAACCC+AGG 0.606167 1_2:+60767360 Msa0082000:CDS
CAGCCGCTACCTTTGAAACA+AGG 0.607790 1_2:-60767197 None:intergenic
CCGTCCAATTGCTTCCCACA+AGG 0.609866 1_2:-60765306 None:intergenic
GATCAAATAATGTATGGTAG+GGG 0.610448 1_2:+60768556 Msa0082000:three_prime_UTR
ACACACTTACAGTCCAAATG+AGG 0.611542 1_2:+60766467 Msa0082000:CDS
GGACCAGGAACTAAGTTTGG+TGG 0.612020 1_2:+60765221 Msa0082000:CDS
TGATGATAAGCAATTTGGAT+CGG 0.613879 1_2:+60767059 Msa0082000:CDS
AAGGAATAGGGAAATATGCA+AGG 0.614564 1_2:+60766998 Msa0082000:CDS
CAAAATGGTTGGGCCTCTCG+AGG 0.619255 1_2:-60767220 None:intergenic
GCAACGGTGGTGATGACTTG+AGG 0.619522 1_2:-60765269 None:intergenic
AGGTTATGAGTGGTGGTCAG+AGG 0.619591 1_2:+60765175 Msa0082000:CDS
GGATCAAAGGTTATGAGTGG+TGG 0.620241 1_2:+60765168 Msa0082000:CDS
TACAGGGAACAGACAGTAGT+CGG 0.622154 1_2:+60765594 Msa0082000:CDS
CATCACTGCCTATACCAACA+AGG 0.622164 1_2:+60765063 Msa0082000:CDS
TCTAAATGCAGCCCGTCAAG+CGG 0.622520 1_2:+60767083 Msa0082000:CDS
GGATACACAAGTCCACTACA+AGG 0.624565 1_2:+60766979 Msa0082000:CDS
CCTCACCACTCAATAAGAGA+AGG 0.624741 1_2:-60764977 None:intergenic
GGTTGCATCAGACGAAGCAA+GGG 0.625975 1_2:+60765424 Msa0082000:intron
GTGTGTGAAGGAAGGTAATG+TGG 0.627264 1_2:+60765933 Msa0082000:CDS
GGAAGCATTGAATGAAGCAA+CGG 0.628505 1_2:-60765285 None:intergenic
CTAAGGCTCAGCAACGAGTG+AGG 0.630458 1_2:+60768290 Msa0082000:CDS
GGGTGAATGACCTCATTGGA+AGG 0.631580 1_2:+60765084 Msa0082000:CDS
GTTGGAGTGCACACATCAGT+TGG 0.632858 1_2:-60766541 None:intergenic
TAAGAGAAGGAGAAATACAA+TGG 0.637514 1_2:-60764964 None:intergenic
ACTTCATGGAGTTTCAAATG+TGG 0.641554 1_2:+60765199 Msa0082000:CDS
AGTTATGTGAGAGGACTACA+GGG 0.641980 1_2:+60765578 Msa0082000:CDS
TGTACAACGGAGGAATGGCT+GGG 0.643008 1_2:+60765450 Msa0082000:CDS
ATCACTGCCTATACCAACAA+GGG 0.645073 1_2:+60765064 Msa0082000:CDS
CACTTCAAGAACAAACACTA+GGG 0.646984 1_2:+60768422 Msa0082000:CDS
GCCATTTAGGATGTGTGTGA+AGG 0.646990 1_2:+60765921 Msa0082000:CDS
TTGGGATCAAAGGTTATGAG+TGG 0.652242 1_2:+60765165 Msa0082000:CDS
CATTGACCATTACCTGCTGG+TGG 0.655851 1_2:-60768220 None:intergenic
TACGCTGCCAGTTATGTGAG+AGG 0.656249 1_2:+60765569 Msa0082000:CDS
AGACAGTAGTCGGTTAAAGG+TGG 0.660144 1_2:+60765604 Msa0082000:CDS
TGCACACATCAGTTGGACCA+AGG 0.660395 1_2:-60766534 None:intergenic
GGTTCTCCCAGGGTACCCTG+TGG 0.661497 1_2:-60767942 None:intergenic
TCTTGATAATTGGAATGGTG+TGG 0.662682 1_2:+60765658 Msa0082000:CDS
CCTATGACATGGTACCCACA+AGG 0.663844 1_2:+60767869 Msa0082000:CDS
GGCACCACAAAAGCAACTAG+TGG 0.674093 1_2:+60768243 Msa0082000:CDS
AGCATTGAATGAAGCAACGG+TGG 0.676069 1_2:-60765282 None:intergenic
GAGCTAAGTTACCTATGACA+TGG 0.679205 1_2:+60767858 Msa0082000:CDS
GGGGTACATAGTATTCACAT+TGG 0.680410 1_2:+60768379 Msa0082000:CDS
AAATGGTAAGTTCTTTGTGG+AGG 0.680816 1_2:-60765033 None:intergenic
GAAGCAAGGGCAATGTACAA+CGG 0.684484 1_2:+60765437 Msa0082000:CDS
GCAATGTCAACCTTCCAATG+AGG 0.684875 1_2:-60765094 None:intergenic
AGAGTGACACATGCACGATG+TGG 0.689806 1_2:+60768115 Msa0082000:CDS
TGCTAGTGCTATTTCCACGG+CGG 0.691992 1_2:-60768081 None:intergenic
TGGACAGGAGACTCCCGGTG+AGG 0.696359 1_2:+60765526 Msa0082000:CDS
GTTAGTGAACAATGCTGCTG+CGG 0.699085 1_2:+60765133 Msa0082000:CDS
TGAGACCAAGCTCATCCACA+GGG 0.704245 1_2:+60767927 Msa0082000:CDS
GCAAGGGCAATGTACAACGG+AGG 0.707393 1_2:+60765440 Msa0082000:CDS
GACTAGGAGAATTCCAATGG+GGG 0.732630 1_2:+60768360 Msa0082000:CDS
GATGACTTGAGGGAAGCTAG+TGG 0.745072 1_2:-60765258 None:intergenic
GGACTAGGAGAATTCCAATG+GGG 0.764226 1_2:+60768359 Msa0082000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAAAAAAAAA+AGG - chr1_2:60768628-60768647 None:intergenic 0.0%
!!! TTTTTTTTTTAAAAAAAAAA+AGG + chr1_2:60768627-60768646 Msa0082000:three_prime_UTR 0.0%
!!! TTTTTTTAAAAAAAAAAAGG+AGG + chr1_2:60768630-60768649 Msa0082000:three_prime_UTR 10.0%
!! AAATCTTACTATATTTACTT+TGG + chr1_2:60766115-60766134 Msa0082000:intron 15.0%
!! AAATATATCAACCATTAATT+AGG - chr1_2:60766334-60766353 None:intergenic 15.0%
!!! TTTTTTCGTTTTTGTTTTTT+AGG + chr1_2:60766946-60766965 Msa0082000:intron 15.0%
!!! TAATGAATCTATCTTTTTTA+AGG + chr1_2:60767387-60767406 Msa0082000:intron 15.0%
!!! AATGAATCTATCTTTTTTAA+GGG + chr1_2:60767388-60767407 Msa0082000:intron 15.0%
!!! TAGTTTTTAAGAAATTGTTT+GGG + chr1_2:60767516-60767535 Msa0082000:intron 15.0%
!!! CATTTATAATGTAGTTTTTT+AGG - chr1_2:60767600-60767619 None:intergenic 15.0%
!!! TTACTAGTTTTCTTTTTAAA+TGG + chr1_2:60767781-60767800 Msa0082000:intron 15.0%
!! TTCTAAATAATCTCAATATA+TGG + chr1_2:60768490-60768509 Msa0082000:three_prime_UTR 15.0%
!! GATTAAAATAGAAGAAATGT+GGG + chr1_2:60765802-60765821 Msa0082000:intron 20.0%
!!! TATTTACTTTGGTGTAATTT+AGG + chr1_2:60766126-60766145 Msa0082000:intron 20.0%
!!! ATATATTTGATGATTGTTAC+AGG + chr1_2:60766346-60766365 Msa0082000:intron 20.0%
!!! GTAGTTTTTAAGAAATTGTT+TGG + chr1_2:60767515-60767534 Msa0082000:intron 20.0%
!!! AGTTTTTAAGAAATTGTTTG+GGG + chr1_2:60767517-60767536 Msa0082000:intron 20.0%
!!! TTGCAAGAGTTTTATATAAA+AGG + chr1_2:60767730-60767749 Msa0082000:intron 20.0%
!!! AAGAGTTTTATATAAAAGGA+GGG + chr1_2:60767734-60767753 Msa0082000:intron 20.0%
!! TATAAAAATTCAAGTCTTGA+TGG - chr1_2:60768449-60768468 None:intergenic 20.0%
!!! TCAAGACTTGAATTTTTATA+TGG + chr1_2:60768449-60768468 Msa0082000:exon 20.0%
!!! CAAGACTTGAATTTTTATAT+GGG + chr1_2:60768450-60768469 Msa0082000:exon 20.0%
!!! AAGACTTGAATTTTTATATG+GGG + chr1_2:60768451-60768470 Msa0082000:exon 20.0%
!! TGTAATTGTAAGATTGATAA+TGG + chr1_2:60768759-60768778 Msa0082000:three_prime_UTR 20.0%
!! TTTTTCATTGATCTAACGTA+AGG + chr1_2:60765388-60765407 Msa0082000:intron 25.0%
!! TTTTCATTGATCTAACGTAA+GGG + chr1_2:60765389-60765408 Msa0082000:intron 25.0%
!! TCCAAATGTGAACATTTTTA+GGG + chr1_2:60765487-60765506 Msa0082000:CDS 25.0%
!! TATGATCTTGATAATTGGAA+TGG + chr1_2:60765653-60765672 Msa0082000:CDS 25.0%
! GTGTATACCATAAACATAAA+GGG - chr1_2:60765710-60765729 None:intergenic 25.0%
! AGTGTATACCATAAACATAA+AGG - chr1_2:60765711-60765730 None:intergenic 25.0%
!! CACTTTTGTACTATGTAATA+TGG + chr1_2:60765747-60765766 Msa0082000:intron 25.0%
!!! CATTTCTTCTATTTTAATCC+AGG - chr1_2:60765801-60765820 None:intergenic 25.0%
! GGATTAAAATAGAAGAAATG+TGG + chr1_2:60765801-60765820 Msa0082000:intron 25.0%
! AAAACTAGGAACCTAATTAA+TGG + chr1_2:60766320-60766339 Msa0082000:intron 25.0%
! TTGGCAAAAGTTATATCTAT+AGG - chr1_2:60767264-60767283 None:intergenic 25.0%
!!! GAGCAATTTTTAAGAATCAT+AGG - chr1_2:60767426-60767445 None:intergenic 25.0%
!!! TAATGTTTTTTTCTTGTGTC+CGG - chr1_2:60767467-60767486 None:intergenic 25.0%
!!! CAAGAGTTTTATATAAAAGG+AGG + chr1_2:60767733-60767752 Msa0082000:intron 25.0%
! TAAGATAATCCATAACCAAA+TGG - chr1_2:60767998-60768017 None:intergenic 25.0%
! GACATTGATGTTAAAAACAT+TGG + chr1_2:60768157-60768176 Msa0082000:CDS 25.0%
!!! AAAAACATTGGTTCAAAAGA+TGG + chr1_2:60768169-60768188 Msa0082000:CDS 25.0%
! TTTAGAAGACATTCTAAATG+CGG - chr1_2:60768477-60768496 None:intergenic 25.0%
! AATCTAATATGTTCTGTCTT+TGG - chr1_2:60768522-60768541 None:intergenic 25.0%
! AATGACGATCAAATAATGTA+TGG + chr1_2:60768550-60768569 Msa0082000:three_prime_UTR 25.0%
!!! TGATAATGGTAATAAACATG+TGG + chr1_2:60768773-60768792 Msa0082000:three_prime_UTR 25.0%
!! GATAATGGTAATAAACATGT+GGG + chr1_2:60768774-60768793 Msa0082000:three_prime_UTR 25.0%
ATCTTCTTGTCTTTCCAAAA+TGG + chr1_2:60764926-60764945 Msa0082000:exon 30.0%
TAAGAGAAGGAGAAATACAA+TGG - chr1_2:60764967-60764986 None:intergenic 30.0%
! AAAGAACTTACCATTTTGCA+AGG + chr1_2:60765040-60765059 Msa0082000:CDS 30.0%
! GTCCAAATGTGAACATTTTT+AGG + chr1_2:60765486-60765505 Msa0082000:CDS 30.0%
TCCCTAAAAATGTTCACATT+TGG - chr1_2:60765491-60765510 None:intergenic 30.0%
! CTGCTTATGATCTTGATAAT+TGG + chr1_2:60765648-60765667 Msa0082000:CDS 30.0%
!! AAAGGTACCCTTTATGTTTA+TGG + chr1_2:60765700-60765719 Msa0082000:intron 30.0%
TGGTATACACTTCTAGATAT+AGG + chr1_2:60765720-60765739 Msa0082000:intron 30.0%
TGTTCTTACAATCAGGTTAA+TGG + chr1_2:60765967-60765986 Msa0082000:CDS 30.0%
! ATTGTTCCCTTTAGAAGATT+GGG - chr1_2:60766012-60766031 None:intergenic 30.0%
! AATTGTTCCCTTTAGAAGAT+TGG - chr1_2:60766013-60766032 None:intergenic 30.0%
ATCATCGTGTGTTCATTTAT+TGG - chr1_2:60766280-60766299 None:intergenic 30.0%
TTCTTCGGCATAAAAAAACT+AGG + chr1_2:60766306-60766325 Msa0082000:intron 30.0%
! TTTGATGATTGTTACAGGTT+TGG + chr1_2:60766351-60766370 Msa0082000:intron 30.0%
!!! GGTTAACAAGCCTTTTTTAA+CGG - chr1_2:60766419-60766438 None:intergenic 30.0%
TTAACCGAAACTGATGTAAA+TGG + chr1_2:60766433-60766452 Msa0082000:CDS 30.0%
!!! TGTTTTTTAGGTATTGCTTG+TGG + chr1_2:60766958-60766977 Msa0082000:intron 30.0%
TGCAATGATGATAAGCAATT+TGG + chr1_2:60767054-60767073 Msa0082000:CDS 30.0%
TGATGATAAGCAATTTGGAT+CGG + chr1_2:60767059-60767078 Msa0082000:CDS 30.0%
ACATTAAGACCAAAATGGTT+GGG - chr1_2:60767233-60767252 None:intergenic 30.0%
GATAGATTCATTACAAACCT+GGG - chr1_2:60767380-60767399 None:intergenic 30.0%
AGATAGATTCATTACAAACC+TGG - chr1_2:60767381-60767400 None:intergenic 30.0%
! TAAGAAATTGTTTGGGGTAA+AGG + chr1_2:60767523-60767542 Msa0082000:intron 30.0%
!! AGTTTTATATAAAAGGAGGG+AGG + chr1_2:60767737-60767756 Msa0082000:intron 30.0%
! AGGGAGGTAGTAAAAAATTT+TGG + chr1_2:60767753-60767772 Msa0082000:intron 30.0%
! TTTGCTACTGTTCAATTTTC+AGG + chr1_2:60767836-60767855 Msa0082000:intron 30.0%
!!! AGTTTTTAAGGTATCCTTGT+GGG - chr1_2:60767886-60767905 None:intergenic 30.0%
!!! AAGTTTTTAAGGTATCCTTG+TGG - chr1_2:60767887-60767906 None:intergenic 30.0%
ACAAGGATACCTTAAAAACT+TGG + chr1_2:60767886-60767905 Msa0082000:CDS 30.0%
!! AGAACCTATCGTTTTTACAA+TGG + chr1_2:60767959-60767978 Msa0082000:CDS 30.0%
AACATCAATGTCAAGTCTAA+TGG - chr1_2:60768149-60768168 None:intergenic 30.0%
ACGATCAAATAATGTATGGT+AGG + chr1_2:60768554-60768573 Msa0082000:three_prime_UTR 30.0%
CGATCAAATAATGTATGGTA+GGG + chr1_2:60768555-60768574 Msa0082000:three_prime_UTR 30.0%
GATCAAATAATGTATGGTAG+GGG + chr1_2:60768556-60768575 Msa0082000:three_prime_UTR 30.0%
ATTCTTGGAGAAGAGATTAT+AGG + chr1_2:60768587-60768606 Msa0082000:three_prime_UTR 30.0%
CGTAACATAGACAAAAAGAA+TGG - chr1_2:60768702-60768721 None:intergenic 30.0%
GTCTATGTTACGATTAATGT+AGG + chr1_2:60768710-60768729 Msa0082000:three_prime_UTR 30.0%
! ATGAGTGTATAGCTTTTGGT+GGG - chr1_2:60764908-60764927 None:intergenic 35.0%
! GAAGATGAGTGTATAGCTTT+TGG - chr1_2:60764912-60764931 None:intergenic 35.0%
! GATGAGGATTGAATCCATTT+TGG - chr1_2:60764943-60764962 None:intergenic 35.0%
TTTCTCCTTCTCTTATTGAG+TGG + chr1_2:60764972-60764991 Msa0082000:CDS 35.0%
!!! TTTTTGGGTCACATGCAAAA+GGG - chr1_2:60765010-60765029 None:intergenic 35.0%
!!! ATTTTTGGGTCACATGCAAA+AGG - chr1_2:60765011-60765030 None:intergenic 35.0%
! TCTTTGTGGAGGTGATTTTT+GGG - chr1_2:60765025-60765044 None:intergenic 35.0%
! TTCTTTGTGGAGGTGATTTT+TGG - chr1_2:60765026-60765045 None:intergenic 35.0%
AAATGGTAAGTTCTTTGTGG+AGG - chr1_2:60765036-60765055 None:intergenic 35.0%
GCAAAATGGTAAGTTCTTTG+TGG - chr1_2:60765039-60765058 None:intergenic 35.0%
AAGGTTGACATTGCAAGAAA+AGG + chr1_2:60765103-60765122 Msa0082000:CDS 35.0%
ACTTCATGGAGTTTCAAATG+TGG + chr1_2:60765199-60765218 Msa0082000:CDS 35.0%
CTTCATGGAGTTTCAAATGT+GGG + chr1_2:60765200-60765219 Msa0082000:CDS 35.0%
TTCATTCAATGCTTCCTTGT+GGG + chr1_2:60765292-60765311 Msa0082000:CDS 35.0%
! TCTTGATAATTGGAATGGTG+TGG + chr1_2:60765658-60765677 Msa0082000:CDS 35.0%
TCGCTTTCACTTTAATGCAA+AGG + chr1_2:60765682-60765701 Msa0082000:CDS 35.0%
TGTGATGTGTTCTTACAATC+AGG + chr1_2:60765960-60765979 Msa0082000:CDS 35.0%
! TTGTTCCCTTTAGAAGATTG+GGG - chr1_2:60766011-60766030 None:intergenic 35.0%
TATCAGATTGTGACTCTGTT+GGG + chr1_2:60766156-60766175 Msa0082000:CDS 35.0%
! CACGATGATGCATTTTTCTT+CGG + chr1_2:60766291-60766310 Msa0082000:intron 35.0%
GATTGTTACAGGTTTGGATT+TGG + chr1_2:60766357-60766376 Msa0082000:intron 35.0%
ACCCAAAATGCCGTTAAAAA+AGG + chr1_2:60766406-60766425 Msa0082000:CDS 35.0%
!!! GCCTTTTTTAACGGCATTTT+GGG - chr1_2:60766410-60766429 None:intergenic 35.0%
!!! AGCCTTTTTTAACGGCATTT+TGG - chr1_2:60766411-60766430 None:intergenic 35.0%
AGCACCATTTACATCAGTTT+CGG - chr1_2:60766440-60766459 None:intergenic 35.0%
CAAACATTCCTAACCTCATT+TGG - chr1_2:60766483-60766502 None:intergenic 35.0%
ATGAGGTTAGGAATGTTTGA+TGG + chr1_2:60766484-60766503 Msa0082000:CDS 35.0%
ATTGTGCTTCTTAAGAACAC+TGG + chr1_2:60766601-60766620 Msa0082000:CDS 35.0%
GTGACAGTAGCATTAGAATT+GGG - chr1_2:60766679-60766698 None:intergenic 35.0%
AGTGACAGTAGCATTAGAAT+TGG - chr1_2:60766680-60766699 None:intergenic 35.0%
AATGCTACTGTCACTATGAT+CGG + chr1_2:60766685-60766704 Msa0082000:CDS 35.0%
!!! GATGCATGTTTTGATAAACG+TGG - chr1_2:60766806-60766825 None:intergenic 35.0%
ACAATTCAGACGTGCAAAAT+TGG + chr1_2:60766839-60766858 Msa0082000:intron 35.0%
CAATTCAGACGTGCAAAATT+GGG + chr1_2:60766840-60766859 Msa0082000:intron 35.0%
!!! ACACGTGTTTTGAGAAATGT+TGG + chr1_2:60766904-60766923 Msa0082000:intron 35.0%
!!! CACGTGTTTTGAGAAATGTT+GGG + chr1_2:60766905-60766924 Msa0082000:intron 35.0%
!!! TGTTTTGAGAAATGTTGGGA+GGG + chr1_2:60766909-60766928 Msa0082000:intron 35.0%
TATTTCCCTATTCCTTGTAG+TGG - chr1_2:60766994-60767013 None:intergenic 35.0%
AAGGAATAGGGAAATATGCA+AGG + chr1_2:60766998-60767017 Msa0082000:CDS 35.0%
!!! GATGCTACTGTTTTAGTGAT+GGG + chr1_2:60767105-60767124 Msa0082000:CDS 35.0%
!!! TACTGTTTTAGTGATGGGAT+TGG + chr1_2:60767110-60767129 Msa0082000:CDS 35.0%
! TCAACAAGACCTTGTTTCAA+AGG + chr1_2:60767188-60767207 Msa0082000:CDS 35.0%
GACATTAAGACCAAAATGGT+TGG - chr1_2:60767234-60767253 None:intergenic 35.0%
!!! ACCATTTTGGTCTTAATGTC+TGG + chr1_2:60767234-60767253 Msa0082000:CDS 35.0%
ACCAGACATTAAGACCAAAA+TGG - chr1_2:60767238-60767257 None:intergenic 35.0%
!!! ATTTTGGTCTTAATGTCTGG+TGG + chr1_2:60767237-60767256 Msa0082000:CDS 35.0%
!!! TTTTGGTCTTAATGTCTGGT+GGG + chr1_2:60767238-60767257 Msa0082000:CDS 35.0%
TACAATTCGAGGATCATTCT+TGG - chr1_2:60767283-60767302 None:intergenic 35.0%
AAGAATGATCCTCGAATTGT+AGG + chr1_2:60767282-60767301 Msa0082000:CDS 35.0%
TCCAAACAATATATCCGCAA+TGG - chr1_2:60767349-60767368 None:intergenic 35.0%
TCTTAAAAATTGCTCCAGTC+CGG + chr1_2:60767431-60767450 Msa0082000:intron 35.0%
!!! TTTTTTTCTTGTGTCCGGAT+GGG - chr1_2:60767462-60767481 None:intergenic 35.0%
AAAAACTACGCTCATCAAGA+TGG - chr1_2:60767504-60767523 None:intergenic 35.0%
TATCTCTCAAAATGCACTCT+AGG + chr1_2:60767574-60767593 Msa0082000:intron 35.0%
! CTGTCATTGCCAAGTTTTTA+AGG - chr1_2:60767898-60767917 None:intergenic 35.0%
TAACCAAATGGATACACTAC+CGG - chr1_2:60767986-60768005 None:intergenic 35.0%
GTAGTGTATCCATTTGGTTA+TGG + chr1_2:60767986-60768005 Msa0082000:CDS 35.0%
AGCTAATGTGTGAACAAAGT+TGG - chr1_2:60768023-60768042 None:intergenic 35.0%
AGATGGTACTAACACTTTGT+TGG + chr1_2:60768186-60768205 Msa0082000:CDS 35.0%
!! TGTATGTAAGCTTTTGAGTG+TGG + chr1_2:60768324-60768343 Msa0082000:CDS 35.0%
TCACTTCAAGAACAAACACT+AGG + chr1_2:60768421-60768440 Msa0082000:CDS 35.0%
CACTTCAAGAACAAACACTA+GGG + chr1_2:60768422-60768441 Msa0082000:CDS 35.0%
! GATGAGTGTATAGCTTTTGG+TGG - chr1_2:60764909-60764928 None:intergenic 40.0%
! GGAGAAATACAATGGTGATG+AGG - chr1_2:60764959-60764978 None:intergenic 40.0%
ATCACTGCCTATACCAACAA+GGG + chr1_2:60765064-60765083 Msa0082000:CDS 40.0%
TCATTCACCCTTGTTGGTAT+AGG - chr1_2:60765074-60765093 None:intergenic 40.0%
TTGGGATCAAAGGTTATGAG+TGG + chr1_2:60765165-60765184 Msa0082000:CDS 40.0%
!! GGAAGCATTGAATGAAGCAA+CGG - chr1_2:60765288-60765307 None:intergenic 40.0%
CTTCATTCAATGCTTCCTTG+TGG + chr1_2:60765291-60765310 Msa0082000:CDS 40.0%
ACGTAAGGGTAATAATGTGC+AGG + chr1_2:60765403-60765422 Msa0082000:intron 40.0%
GCGTATTTACCTGCTAGAAT+TGG - chr1_2:60765554-60765573 None:intergenic 40.0%
AGTTATGTGAGAGGACTACA+GGG + chr1_2:60765578-60765597 Msa0082000:CDS 40.0%
AACAGACAGTAGTCGGTTAA+AGG + chr1_2:60765601-60765620 Msa0082000:CDS 40.0%
!! GATTACCAAAAGTGTTGGAC+TGG - chr1_2:60765779-60765798 None:intergenic 40.0%
!! TCCAACACTTTTGGTAATCC+TGG + chr1_2:60765780-60765799 Msa0082000:intron 40.0%
! TCCAGGATTACCAAAAGTGT+TGG - chr1_2:60765784-60765803 None:intergenic 40.0%
ACTCATGTATGTCTACATGC+AGG + chr1_2:60765864-60765883 Msa0082000:intron 40.0%
!! ACACGTTCAATGTGCCATTT+AGG + chr1_2:60765908-60765927 Msa0082000:CDS 40.0%
TCCTTCACACACATCCTAAA+TGG - chr1_2:60765925-60765944 None:intergenic 40.0%
! TTTAGGATGTGTGTGAAGGA+AGG + chr1_2:60765925-60765944 Msa0082000:CDS 40.0%
! CTTCTAAAGGGAACAATTCG+TGG + chr1_2:60766015-60766034 Msa0082000:CDS 40.0%
GTATCAGATTGTGACTCTGT+TGG + chr1_2:60766155-60766174 Msa0082000:CDS 40.0%
ATCAGATTGTGACTCTGTTG+GGG + chr1_2:60766157-60766176 Msa0082000:CDS 40.0%
!! CTGGCGTTGATGTATAATGT+TGG - chr1_2:60766196-60766215 None:intergenic 40.0%
! GTGTAACTAGCCTGCTTTAA+TGG - chr1_2:60766237-60766256 None:intergenic 40.0%
ACAGGTTTGGATTTGGATTG+TGG + chr1_2:60766364-60766383 Msa0082000:intron 40.0%
!! CATTTTGGGTATGTTGTGCA+AGG - chr1_2:60766396-60766415 None:intergenic 40.0%
ACACACTTACAGTCCAAATG+AGG + chr1_2:60766467-60766486 Msa0082000:CDS 40.0%
CTTACAGTCCAAATGAGGTT+AGG + chr1_2:60766472-60766491 Msa0082000:CDS 40.0%
! CACAGTACGATGATTTTTCG+TGG - chr1_2:60766644-60766663 None:intergenic 40.0%
CACGAAAAATCATCGTACTG+TGG + chr1_2:60766642-60766661 Msa0082000:CDS 40.0%
CATGTGCCTGCATAAAACAA+GGG - chr1_2:60766728-60766747 None:intergenic 40.0%
!!! CTTGTTTTATGCAGGCACAT+GGG + chr1_2:60766727-60766746 Msa0082000:intron 40.0%
! CTCAAAACACGTGTTTTGTC+TGG - chr1_2:60766898-60766917 None:intergenic 40.0%
!!! GTGTTTTGAGAAATGTTGGG+AGG + chr1_2:60766908-60766927 Msa0082000:intron 40.0%
!!! GTTTTGAGAAATGTTGGGAG+GGG + chr1_2:60766910-60766929 Msa0082000:intron 40.0%
ACAAGTCCACTACAAGGAAT+AGG + chr1_2:60766985-60767004 Msa0082000:CDS 40.0%
CAAGTCCACTACAAGGAATA+GGG + chr1_2:60766986-60767005 Msa0082000:CDS 40.0%
!!! GGATGCTACTGTTTTAGTGA+TGG + chr1_2:60767104-60767123 Msa0082000:CDS 40.0%
ACCAGTCCTATCTACCATTT+CGG - chr1_2:60767151-60767170 None:intergenic 40.0%
! AGACCTTGTTTCAAAGGTAG+CGG + chr1_2:60767194-60767213 Msa0082000:CDS 40.0%
GCCATTGCGGATATATTGTT+TGG + chr1_2:60767345-60767364 Msa0082000:CDS 40.0%
! TCATTACAAACCTGGGTTAG+CGG - chr1_2:60767373-60767392 None:intergenic 40.0%
!!! GTTTTTTTCTTGTGTCCGGA+TGG - chr1_2:60767463-60767482 None:intergenic 40.0%
GAGCTAAGTTACCTATGACA+TGG + chr1_2:60767858-60767877 Msa0082000:CDS 40.0%
AAAAACGATAGGTTCTCCCA+GGG - chr1_2:60767955-60767974 None:intergenic 40.0%
TAAAAACGATAGGTTCTCCC+AGG - chr1_2:60767956-60767975 None:intergenic 40.0%
!! CTATCGTTTTTACAATGGCC+CGG + chr1_2:60767964-60767983 Msa0082000:CDS 40.0%
AACCAAATGGATACACTACC+GGG - chr1_2:60767985-60768004 None:intergenic 40.0%
ATTAGCTAGTGCACCAAAAG+TGG + chr1_2:60768036-60768055 Msa0082000:CDS 40.0%
!! CTTTGCTAGTGCTATTTCCA+CGG - chr1_2:60768087-60768106 None:intergenic 40.0%
!!! AAAGCCACTAGTTGCTTTTG+TGG - chr1_2:60768250-60768269 None:intergenic 40.0%
GAAAGTCTATGTTCCTGCTA+AGG + chr1_2:60768273-60768292 Msa0082000:CDS 40.0%
!! TTGAGTGTGGTTGATAAGTC+TGG + chr1_2:60768337-60768356 Msa0082000:CDS 40.0%
!! TGAGTGTGGTTGATAAGTCT+GGG + chr1_2:60768338-60768357 Msa0082000:CDS 40.0%
TGAATACTATGTACCCCCAT+TGG - chr1_2:60768376-60768395 None:intergenic 40.0%
GGGGTACATAGTATTCACAT+TGG + chr1_2:60768379-60768398 Msa0082000:CDS 40.0%
CCTCACCACTCAATAAGAGA+AGG - chr1_2:60764980-60764999 None:intergenic 45.0%
CCTTCTCTTATTGAGTGGTG+AGG + chr1_2:60764977-60764996 Msa0082000:CDS 45.0%
CATCACTGCCTATACCAACA+AGG + chr1_2:60765063-60765082 Msa0082000:CDS 45.0%
ATGAGGTCATTCACCCTTGT+TGG - chr1_2:60765080-60765099 None:intergenic 45.0%
ACAAGGGTGAATGACCTCAT+TGG + chr1_2:60765080-60765099 Msa0082000:CDS 45.0%
GCAATGTCAACCTTCCAATG+AGG - chr1_2:60765097-60765116 None:intergenic 45.0%
GTTAGTGAACAATGCTGCTG+CGG + chr1_2:60765133-60765152 Msa0082000:CDS 45.0%
TAACCTTTGATCCCAACCCT+TGG - chr1_2:60765161-60765180 None:intergenic 45.0%
GGATCAAAGGTTATGAGTGG+TGG + chr1_2:60765168-60765187 Msa0082000:CDS 45.0%
! AGCATTGAATGAAGCAACGG+TGG - chr1_2:60765285-60765304 None:intergenic 45.0%
GAAGCAAGGGCAATGTACAA+CGG + chr1_2:60765437-60765456 Msa0082000:CDS 45.0%
!! ACATTTTTAGGGACCCACGA+TGG + chr1_2:60765498-60765517 Msa0082000:CDS 45.0%
!! CATTTTTAGGGACCCACGAT+GGG + chr1_2:60765499-60765518 Msa0082000:CDS 45.0%
!! ATTTTTAGGGACCCACGATG+GGG + chr1_2:60765500-60765519 Msa0082000:CDS 45.0%
TGCTAGAATTGGATCCTCAC+CGG - chr1_2:60765543-60765562 None:intergenic 45.0%
CTGTAGTCCTCTCACATAAC+TGG - chr1_2:60765579-60765598 None:intergenic 45.0%
CAGTTATGTGAGAGGACTAC+AGG + chr1_2:60765577-60765596 Msa0082000:CDS 45.0%
TACAGGGAACAGACAGTAGT+CGG + chr1_2:60765594-60765613 Msa0082000:CDS 45.0%
AGACAGTAGTCGGTTAAAGG+TGG + chr1_2:60765604-60765623 Msa0082000:CDS 45.0%
! GCCATTTAGGATGTGTGTGA+AGG + chr1_2:60765921-60765940 Msa0082000:CDS 45.0%
GTGTGTGAAGGAAGGTAATG+TGG + chr1_2:60765933-60765952 Msa0082000:CDS 45.0%
TGCTGACCCCAATCTTCTAA+AGG + chr1_2:60766002-60766021 Msa0082000:CDS 45.0%
GCTGACCCCAATCTTCTAAA+GGG + chr1_2:60766003-60766022 Msa0082000:CDS 45.0%
AGGGAACAATTCGTGGTCAA+TGG + chr1_2:60766022-60766041 Msa0082000:CDS 45.0%
TGGGTATGTTGTGCAAGGAA+AGG - chr1_2:60766391-60766410 None:intergenic 45.0%
TTGCCATATGGTTGAGCAGA+TGG - chr1_2:60766514-60766533 None:intergenic 45.0%
AGAGCTAAGTCTTGGTGAGT+TGG - chr1_2:60766562-60766581 None:intergenic 45.0%
CAGCTTCAAGAGCTAAGTCT+TGG - chr1_2:60766570-60766589 None:intergenic 45.0%
CTCTTGAAGCTGCAAGACAA+GGG + chr1_2:60766578-60766597 Msa0082000:CDS 45.0%
! CGATGATTTTTCGTGGAGAG+AGG - chr1_2:60766637-60766656 None:intergenic 45.0%
ACTATGATCGGCAACTATGC+TGG + chr1_2:60766697-60766716 Msa0082000:CDS 45.0%
CCATGTGCCTGCATAAAACA+AGG - chr1_2:60766729-60766748 None:intergenic 45.0%
!!! CCTTGTTTTATGCAGGCACA+TGG + chr1_2:60766726-60766745 Msa0082000:intron 45.0%
GGATACACAAGTCCACTACA+AGG + chr1_2:60766979-60766998 Msa0082000:CDS 45.0%
AAACAGTAGCATCCGCTTGA+CGG - chr1_2:60767098-60767117 None:intergenic 45.0%
GGGATTGGATCAGTCAATTG+AGG + chr1_2:60767125-60767144 Msa0082000:CDS 45.0%
TCAGTCAATTGAGGCCGAAA+TGG + chr1_2:60767134-60767153 Msa0082000:CDS 45.0%
TTGAGGCCGAAATGGTAGAT+AGG + chr1_2:60767142-60767161 Msa0082000:CDS 45.0%
!! AGGACTGGTTTACTTCTTCC+TGG + chr1_2:60767162-60767181 Msa0082000:CDS 45.0%
!! GGACTGGTTTACTTCTTCCT+GGG + chr1_2:60767163-60767182 Msa0082000:CDS 45.0%
TCGAATTGTAGGCGTCTTGT+GGG + chr1_2:60767293-60767312 Msa0082000:CDS 45.0%
CGGGCCATTGTAAAAACGAT+AGG - chr1_2:60767966-60767985 None:intergenic 45.0%
! ACCAAAAGTGGTGTCAGTTC+CGG + chr1_2:60768048-60768067 Msa0082000:CDS 45.0%
! ACCAGCAGGTAATGGTCAAT+GGG + chr1_2:60768222-60768241 Msa0082000:CDS 45.0%
!! TGGTTGATAAGTCTGGGACT+AGG + chr1_2:60768344-60768363 Msa0082000:CDS 45.0%
TGGGACTAGGAGAATTCCAA+TGG + chr1_2:60768357-60768376 Msa0082000:CDS 45.0%
GGGACTAGGAGAATTCCAAT+GGG + chr1_2:60768358-60768377 Msa0082000:CDS 45.0%
GGACTAGGAGAATTCCAATG+GGG + chr1_2:60768359-60768378 Msa0082000:CDS 45.0%
GACTAGGAGAATTCCAATGG+GGG + chr1_2:60768360-60768379 Msa0082000:CDS 45.0%
GTAGGGGTTGTTGCAATTCT+TGG + chr1_2:60768572-60768591 Msa0082000:three_prime_UTR 45.0%
GGCAGTGATGCCTTGCAAAA+TGG - chr1_2:60765053-60765072 None:intergenic 50.0%
GGGTGAATGACCTCATTGGA+AGG + chr1_2:60765084-60765103 Msa0082000:CDS 50.0%
GTTCCAAGGGTTGGGATCAA+AGG + chr1_2:60765155-60765174 Msa0082000:CDS 50.0%
AGGTTATGAGTGGTGGTCAG+AGG + chr1_2:60765175-60765194 Msa0082000:CDS 50.0%
GGAGTTTCAAATGTGGGACC+AGG + chr1_2:60765206-60765225 Msa0082000:CDS 50.0%
GTGGGACCAGGAACTAAGTT+TGG + chr1_2:60765218-60765237 Msa0082000:CDS 50.0%
GGACCAGGAACTAAGTTTGG+TGG + chr1_2:60765221-60765240 Msa0082000:CDS 50.0%
TGGCCACCAAACTTAGTTCC+TGG - chr1_2:60765227-60765246 None:intergenic 50.0%
GATGACTTGAGGGAAGCTAG+TGG - chr1_2:60765261-60765280 None:intergenic 50.0%
! CAACGGTGGTGATGACTTGA+GGG - chr1_2:60765271-60765290 None:intergenic 50.0%
GCTTCCTTGTGGGAAGCAAT+TGG + chr1_2:60765302-60765321 Msa0082000:CDS 50.0%
CCTTGTGGGAAGCAATTGGA+CGG + chr1_2:60765306-60765325 Msa0082000:CDS 50.0%
CTTGTGGGAAGCAATTGGAC+GGG + chr1_2:60765307-60765326 Msa0082000:CDS 50.0%
AGGTTGCATCAGACGAAGCA+AGG + chr1_2:60765423-60765442 Msa0082000:intron 50.0%
GGTTGCATCAGACGAAGCAA+GGG + chr1_2:60765424-60765443 Msa0082000:intron 50.0%
GGCAATGTACAACGGAGGAA+TGG + chr1_2:60765445-60765464 Msa0082000:CDS 50.0%
ATGTACAACGGAGGAATGGC+TGG + chr1_2:60765449-60765468 Msa0082000:CDS 50.0%
TGTACAACGGAGGAATGGCT+GGG + chr1_2:60765450-60765469 Msa0082000:CDS 50.0%
! GAATGGCTGGGTTGACATAC+TGG + chr1_2:60765462-60765481 Msa0082000:CDS 50.0%
GCTAGAATTGGATCCTCACC+GGG - chr1_2:60765542-60765561 None:intergenic 50.0%
GGTGAGGATCCAATTCTAGC+AGG + chr1_2:60765542-60765561 Msa0082000:CDS 50.0%
TACGCTGCCAGTTATGTGAG+AGG + chr1_2:60765569-60765588 Msa0082000:CDS 50.0%
!! CCAAAAGTGTTGGACTGGAC+TGG - chr1_2:60765774-60765793 None:intergenic 50.0%
! CCAGTCCAGTCCAACACTTT+TGG + chr1_2:60765771-60765790 Msa0082000:intron 50.0%
CTACATGCAGGTTAGCAAGC+AGG + chr1_2:60765876-60765895 Msa0082000:intron 50.0%
GATTGGGGTCAGCACAAGTA+GGG - chr1_2:60765996-60766015 None:intergenic 50.0%
AGATTGGGGTCAGCACAAGT+AGG - chr1_2:60765997-60766016 None:intergenic 50.0%
GTGGTCAATGGCGTCTTGAT+GGG + chr1_2:60766034-60766053 Msa0082000:CDS 50.0%
GCTGCTGATGCCATTAAAGC+AGG + chr1_2:60766224-60766243 Msa0082000:CDS 50.0%
GAGCCATCTGCTCAACCATA+TGG + chr1_2:60766508-60766527 Msa0082000:CDS 50.0%
GCTCAACCATATGGCAACCT+TGG + chr1_2:60766517-60766536 Msa0082000:CDS 50.0%
GTTGGACCAAGGTTGCCATA+TGG - chr1_2:60766526-60766545 None:intergenic 50.0%
TGCACACATCAGTTGGACCA+AGG - chr1_2:60766537-60766556 None:intergenic 50.0%
GTTGGAGTGCACACATCAGT+TGG - chr1_2:60766544-60766563 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGACA+AGG + chr1_2:60766577-60766596 Msa0082000:CDS 50.0%
CATCGTACTGTGGCAGTCAT+TGG + chr1_2:60766652-60766671 Msa0082000:CDS 50.0%
TGATCGGCAACTATGCTGGT+AGG + chr1_2:60766701-60766720 Msa0082000:intron 50.0%
GATCGGCAACTATGCTGGTA+GGG + chr1_2:60766702-60766721 Msa0082000:intron 50.0%
!!! GTAGGGCCCTTGTTTTATGC+AGG + chr1_2:60766719-60766738 Msa0082000:intron 50.0%
TCTAAATGCAGCCCGTCAAG+CGG + chr1_2:60767083-60767102 Msa0082000:CDS 50.0%
AACAGTAGCATCCGCTTGAC+GGG - chr1_2:60767097-60767116 None:intergenic 50.0%
GCCGAAATGGTAGATAGGAC+TGG + chr1_2:60767147-60767166 Msa0082000:CDS 50.0%
!! ACAAGGTCTTGTTGATGCCC+AGG - chr1_2:60767183-60767202 None:intergenic 50.0%
!! CAGCCGCTACCTTTGAAACA+AGG - chr1_2:60767200-60767219 None:intergenic 50.0%
CACAAGACGCCTACAATTCG+AGG - chr1_2:60767294-60767313 None:intergenic 50.0%
CTCGAATTGTAGGCGTCTTG+TGG + chr1_2:60767292-60767311 Msa0082000:CDS 50.0%
! TTGTTTGGAACCGCTAACCC+AGG + chr1_2:60767360-60767379 Msa0082000:CDS 50.0%
CCTTGTGGGTACCATGTCAT+AGG - chr1_2:60767872-60767891 None:intergenic 50.0%
CCTATGACATGGTACCCACA+AGG + chr1_2:60767869-60767888 Msa0082000:CDS 50.0%
ATGAGACCAAGCTCATCCAC+AGG + chr1_2:60767926-60767945 Msa0082000:CDS 50.0%
TGAGACCAAGCTCATCCACA+GGG + chr1_2:60767927-60767946 Msa0082000:CDS 50.0%
! ACCGGAACTGACACCACTTT+TGG - chr1_2:60768052-60768071 None:intergenic 50.0%
!! TGCTAGTGCTATTTCCACGG+CGG - chr1_2:60768084-60768103 None:intergenic 50.0%
AGAGTGACACATGCACGATG+TGG + chr1_2:60768115-60768134 Msa0082000:CDS 50.0%
TCAGTACCACCAGCAGGTAA+TGG + chr1_2:60768214-60768233 Msa0082000:CDS 50.0%
CATTGACCATTACCTGCTGG+TGG - chr1_2:60768223-60768242 None:intergenic 50.0%
! CACCAGCAGGTAATGGTCAA+TGG + chr1_2:60768221-60768240 Msa0082000:CDS 50.0%
GGCACCACAAAAGCAACTAG+TGG + chr1_2:60768243-60768262 Msa0082000:CDS 50.0%
ACAATGCTGCTGCGGTTCCA+AGG + chr1_2:60765141-60765160 Msa0082000:CDS 55.0%
CAATGCTGCTGCGGTTCCAA+GGG + chr1_2:60765142-60765161 Msa0082000:CDS 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG + chr1_2:60765185-60765204 Msa0082000:CDS 55.0%
AGCTAGTGGCAGCTGGGAAT+TGG - chr1_2:60765247-60765266 None:intergenic 55.0%
! GCAACGGTGGTGATGACTTG+AGG - chr1_2:60765272-60765291 None:intergenic 55.0%
CCGTCCAATTGCTTCCCACA+AGG - chr1_2:60765309-60765328 None:intergenic 55.0%
GCAAGGGCAATGTACAACGG+AGG + chr1_2:60765440-60765459 Msa0082000:CDS 55.0%
GCAGGTTAGCAAGCAGGACA+TGG + chr1_2:60765882-60765901 Msa0082000:intron 55.0%
CGTGGTCAATGGCGTCTTGA+TGG + chr1_2:60766033-60766052 Msa0082000:CDS 55.0%
GCATCAGCAGCAGCTTCTTC+TGG - chr1_2:60766215-60766234 None:intergenic 55.0%
GCAAGGACTATTCACGAGCC+CGG + chr1_2:60767015-60767034 Msa0082000:CDS 55.0%
CATGCCACATTCGCACAACC+GGG - chr1_2:60767036-60767055 None:intergenic 55.0%
GCATGCCACATTCGCACAAC+CGG - chr1_2:60767037-60767056 None:intergenic 55.0%
CAAAATGGTTGGGCCTCTCG+AGG - chr1_2:60767223-60767242 None:intergenic 55.0%
! CTCGAGAGGCCCAACCATTT+TGG + chr1_2:60767221-60767240 Msa0082000:CDS 55.0%
ATTGTAGGCGTCTTGTGGGC+TGG + chr1_2:60767297-60767316 Msa0082000:CDS 55.0%
!! GTCTTGTGGGCTGGTTATCC+TGG + chr1_2:60767306-60767325 Msa0082000:CDS 55.0%
GCTGGTTATCCTGGTCAAGC+CGG + chr1_2:60767315-60767334 Msa0082000:CDS 55.0%
TGTGTCCGGATGGGTGAATC+CGG - chr1_2:60767453-60767472 None:intergenic 55.0%
GGCCCGGTAGTGTATCCATT+TGG + chr1_2:60767980-60767999 Msa0082000:CDS 55.0%
! GTGGTGTCAGTTCCGGTAGA+CGG + chr1_2:60768055-60768074 Msa0082000:CDS 55.0%
!! TAGTGCTATTTCCACGGCGG+TGG - chr1_2:60768081-60768100 None:intergenic 55.0%
GTGTTCTCAGTACCACCAGC+AGG + chr1_2:60768208-60768227 Msa0082000:CDS 55.0%
GCCCATTGACCATTACCTGC+TGG - chr1_2:60768226-60768245 None:intergenic 55.0%
ACTCGTTGCTGAGCCTTAGC+AGG - chr1_2:60768289-60768308 None:intergenic 55.0%
CTAAGGCTCAGCAACGAGTG+AGG + chr1_2:60768290-60768309 Msa0082000:CDS 55.0%
CTGCTGCGGTTCCAAGGGTT+GGG + chr1_2:60765147-60765166 Msa0082000:CDS 60.0%
GAGGGAAGCTAGTGGCAGCT+GGG - chr1_2:60765253-60765272 None:intergenic 60.0%
TGAGGGAAGCTAGTGGCAGC+TGG - chr1_2:60765254-60765273 None:intergenic 60.0%
GGTTATCCTGGTCAAGCCGG+TGG + chr1_2:60767318-60767337 Msa0082000:CDS 60.0%
ATCCGCAATGGCAGCACCAC+CGG - chr1_2:60767337-60767356 None:intergenic 60.0%
CCAGTCCGGATTCACCCATC+CGG + chr1_2:60767445-60767464 Msa0082000:intron 60.0%
GGGTACCCTGTGGATGAGCT+TGG - chr1_2:60767935-60767954 None:intergenic 60.0%
! AGCTCATCCACAGGGTACCC+TGG + chr1_2:60767935-60767954 Msa0082000:CDS 60.0%
! GCTCATCCACAGGGTACCCT+GGG + chr1_2:60767936-60767955 Msa0082000:CDS 60.0%
GCTGCTGCGGTTCCAAGGGT+TGG + chr1_2:60765146-60765165 Msa0082000:CDS 65.0%
CCTGTCCACGACCCCATCGT+GGG - chr1_2:60765514-60765533 None:intergenic 65.0%
TCCTGTCCACGACCCCATCG+TGG - chr1_2:60765515-60765534 None:intergenic 65.0%
GGTCGTGGACAGGAGACTCC+CGG + chr1_2:60765521-60765540 Msa0082000:CDS 65.0%
TGGACAGGAGACTCCCGGTG+AGG + chr1_2:60765526-60765545 Msa0082000:CDS 65.0%
CGAGCCCGGTTGTGCGAATG+TGG + chr1_2:60767029-60767048 Msa0082000:CDS 65.0%
! AAGGTAGCGGCTGCCTCGAG+AGG + chr1_2:60767207-60767226 Msa0082000:CDS 65.0%
!! AGCCGGTGGTGCTGCCATTG+CGG + chr1_2:60767332-60767351 Msa0082000:CDS 65.0%
CCGGATGGGTGAATCCGGAC+TGG - chr1_2:60767448-60767467 None:intergenic 65.0%
! GGTTCTCCCAGGGTACCCTG+TGG - chr1_2:60767945-60767964 None:intergenic 65.0%
AGGGACCCACGATGGGGTCG+TGG + chr1_2:60765506-60765525 Msa0082000:CDS 70.0%
CCCACGATGGGGTCGTGGAC+AGG + chr1_2:60765511-60765530 Msa0082000:CDS 70.0%
!! GCAGCACCACCGGCTTGACC+AGG - chr1_2:60767327-60767346 None:intergenic 70.0%
CCACGGCGGTGGCCGTCTAC+CGG - chr1_2:60768070-60768089 None:intergenic 75.0%
! CCGGTAGACGGCCACCGCCG+TGG + chr1_2:60768067-60768086 Msa0082000:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60764900 60768863 60764900 ID=Msa0082000;Name=Msa0082000
chr1_2 mRNA 60764900 60768863 60764900 ID=Msa0082000-mRNA-1;Parent=Msa0082000;Name=Msa0082000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=45|1|1|1|1|1|7|404|765
chr1_2 exon 60764900 60765328 60764900 ID=Msa0082000-mRNA-1:exon:19841;Parent=Msa0082000-mRNA-1
chr1_2 exon 60765425 60765703 60765425 ID=Msa0082000-mRNA-1:exon:19842;Parent=Msa0082000-mRNA-1
chr1_2 exon 60765886 60766055 60765886 ID=Msa0082000-mRNA-1:exon:19843;Parent=Msa0082000-mRNA-1
chr1_2 exon 60766148 60766245 60766148 ID=Msa0082000-mRNA-1:exon:19844;Parent=Msa0082000-mRNA-1
chr1_2 exon 60766368 60766718 60766368 ID=Msa0082000-mRNA-1:exon:19845;Parent=Msa0082000-mRNA-1
chr1_2 exon 60766968 60767381 60766968 ID=Msa0082000-mRNA-1:exon:19846;Parent=Msa0082000-mRNA-1
chr1_2 exon 60767858 60768863 60767858 ID=Msa0082000-mRNA-1:exon:19847;Parent=Msa0082000-mRNA-1
chr1_2 five_prime_UTR 60764900 60764944 60764900 ID=Msa0082000-mRNA-1:five_prime_utr;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60764945 60765328 60764945 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60765425 60765703 60765425 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60765886 60766055 60765886 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60766148 60766245 60766148 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60766368 60766718 60766368 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60766968 60767381 60766968 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 CDS 60767858 60768459 60767858 ID=Msa0082000-mRNA-1:cds;Parent=Msa0082000-mRNA-1
chr1_2 three_prime_UTR 60768460 60768863 60768460 ID=Msa0082000-mRNA-1:three_prime_utr;Parent=Msa0082000-mRNA-1
Gene Sequence

>Msa0082000

ATGGATTCAATCCTCATCACCATTGTATTTCTCCTTCTCTTATTGAGTGGTGAGGCACGTGACCCTTTTGCATGTGACCCAAAAATCACCTCCACAAAGAACTTACCATTTTGCAAGGCATCACTGCCTATACCAACAAGGGTGAATGACCTCATTGGAAGGTTGACATTGCAAGAAAAGGTTAACATGTTAGTGAACAATGCTGCTGCGGTTCCAAGGGTTGGGATCAAAGGTTATGAGTGGTGGTCAGAGGCACTTCATGGAGTTTCAAATGTGGGACCAGGAACTAAGTTTGGTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACCACCGTTGCTTCATTCAATGCTTCCTTGTGGGAAGCAATTGGACGGGTTGCATCAGACGAAGCAAGGGCAATGTACAACGGAGGAATGGCTGGGTTGACATACTGGAGTCCAAATGTGAACATTTTTAGGGACCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGATCCAATTCTAGCAGGTAAATACGCTGCCAGTTATGTGAGAGGACTACAGGGAACAGACAGTAGTCGGTTAAAGGTGGCTGCTTCATGTAAACACTTTACTGCTTATGATCTTGATAATTGGAATGGTGTGGATCGCTTTCACTTTAATGCAAAGGTTAGCAAGCAGGACATGGAAGACACGTTCAATGTGCCATTTAGGATGTGTGTGAAGGAAGGTAATGTGGCTAGTGTGATGTGTTCTTACAATCAGGTTAATGGTGTCCCTACTTGTGCTGACCCCAATCTTCTAAAGGGAACAATTCGTGGTCAATGGCGTCTTGATGGGTACATTGTATCAGATTGTGACTCTGTTGGGGTATTTTACACTAACCAACATTATACATCAACGCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGACCTTTCCTTGCACAACATACCCAAAATGCCGTTAAAAAAGGCTTGTTAACCGAAACTGATGTAAATGGTGCTTTAGCAAACACACTTACAGTCCAAATGAGGTTAGGAATGTTTGATGGTGAGCCATCTGCTCAACCATATGGCAACCTTGGTCCAACTGATGTGTGCACTCCAACTCACCAAGACTTAGCTCTTGAAGCTGCAAGACAAGGGATTGTGCTTCTTAAGAACACTGGTTCATCTTTGCCTCTCTCCACGAAAAATCATCGTACTGTGGCAGTCATTGGACCCAATTCTAATGCTACTGTCACTATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGTCCACTACAAGGAATAGGGAAATATGCAAGGACTATTCACGAGCCCGGTTGTGCGAATGTGGCATGCAATGATGATAAGCAATTTGGATCGGCTCTAAATGCAGCCCGTCAAGCGGATGCTACTGTTTTAGTGATGGGATTGGATCAGTCAATTGAGGCCGAAATGGTAGATAGGACTGGTTTACTTCTTCCTGGGCATCAACAAGACCTTGTTTCAAAGGTAGCGGCTGCCTCGAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTATAGATATAACTTTTGCCAAGAATGATCCTCGAATTGTAGGCGTCTTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCGGATATATTGTTTGGAACCGCTAACCCAGGAGCTAAGTTACCTATGACATGGTACCCACAAGGATACCTTAAAAACTTGGCAATGACAGACATCGCAATGAGACCAAGCTCATCCACAGGGTACCCTGGGAGAACCTATCGTTTTTACAATGGCCCGGTAGTGTATCCATTTGGTTATGGATTATCTTACACCAACTTTGTTCACACATTAGCTAGTGCACCAAAAGTGGTGTCAGTTCCGGTAGACGGCCACCGCCGTGGAAATAGCACTAGCAAAGCAGCAATTAGAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGACTTGACATTGATGTTAAAAACATTGGTTCAAAAGATGGTACTAACACTTTGTTGGTGTTCTCAGTACCACCAGCAGGTAATGGTCAATGGGCACCACAAAAGCAACTAGTGGCTTTTGAGAAAGTCTATGTTCCTGCTAAGGCTCAGCAACGAGTGAGGATCGATATTCATGTATGTAAGCTTTTGAGTGTGGTTGATAAGTCTGGGACTAGGAGAATTCCAATGGGGGTACATAGTATTCACATTGGTGATGTTAAACACTTTGTATCACTTCAAGAACAAACACTAGGGACCATCAAGACTTGA
Protein sequence

>Msa0082000

MDSILITIVFLLLLLSGEARDPFACDPKITSTKNLPFCKASLPIPTRVNDLIGRLTLQEKVNMLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTVASFNASLWEAIGRVASDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDSSRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDMEDTFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADPNLLKGTIRGQWRLDGYIVSDCDSVGVFYTNQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTQNAVKKGLLTETDVNGALANTLTVQMRLGMFDGEPSAQPYGNLGPTDVCTPTHQDLALEAARQGIVLLKNTGSSLPLSTKNHRTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYARTIHEPGCANVACNDDKQFGSALNAARQADATVLVMGLDQSIEAEMVDRTGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPIDITFAKNDPRIVGVLWAGYPGQAGGAAIADILFGTANPGAKLPMTWYPQGYLKNLAMTDIAMRPSSSTGYPGRTYRFYNGPVVYPFGYGLSYTNFVHTLASAPKVVSVPVDGHRRGNSTSKAAIRVTHARCGKLSIRLDIDVKNIGSKDGTNTLLVFSVPPAGNGQWAPQKQLVAFEKVYVPAKAQQRVRIDIHVCKLLSVVDKSGTRRIPMGVHSIHIGDVKHFVSLQEQTLGTIKT*