Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029060 | XP_003590676.1 | 92.615 | 325 | 24 | 0 | 1 | 325 | 1 | 325 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029060 | sp|Q8S3D5|LRL2_ARATH | 36.923 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.62e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0029060 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029060 | Msa0124530 | 0.987602 | 7.444107e-171 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029060 | MtrunA17_Chr1g0185741 | 91.749 | 303 | 25 | 0 | 1 | 303 | 1 | 303 | 0.0 | 583 |
| Msa0029060 | MtrunA17_Chr4g0074161 | 36.486 | 148 | 74 | 3 | 190 | 317 | 212 | 359 | 4.14e-18 | 84.3 |
| Msa0029060 | MtrunA17_Chr1g0190731 | 34.307 | 137 | 78 | 1 | 190 | 314 | 199 | 335 | 4.73e-16 | 77.8 |
| Msa0029060 | MtrunA17_Chr1g0184841 | 34.286 | 140 | 80 | 1 | 190 | 317 | 126 | 265 | 1.02e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029060 | AT5G64980.1 | 43.089 | 123 | 68 | 2 | 191 | 311 | 218 | 340 | 7.94e-22 | 94.7 |
| Msa0029060 | AT5G64980.2 | 43.089 | 123 | 68 | 2 | 191 | 311 | 218 | 340 | 7.94e-22 | 94.7 |
| Msa0029060 | AT4G30980.1 | 36.923 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.65e-18 | 84.7 |
| Msa0029060 | AT4G30980.2 | 36.923 | 130 | 80 | 1 | 190 | 317 | 184 | 313 | 2.58e-18 | 85.1 |
| Msa0029060 | AT2G24260.2 | 34.132 | 167 | 83 | 5 | 170 | 317 | 23 | 181 | 4.20e-18 | 82.8 |
| Msa0029060 | AT2G24260.1 | 34.731 | 167 | 82 | 5 | 170 | 317 | 126 | 284 | 1.85e-17 | 82.4 |
| Msa0029060 | AT5G58010.1 | 33.784 | 148 | 74 | 4 | 190 | 315 | 105 | 250 | 7.27e-15 | 74.3 |
| Msa0029060 | AT1G03040.2 | 30.457 | 197 | 117 | 4 | 133 | 311 | 79 | 273 | 4.70e-13 | 68.9 |
| Msa0029060 | AT1G03040.1 | 36.434 | 129 | 75 | 1 | 190 | 311 | 150 | 278 | 1.87e-12 | 67.4 |
| Msa0029060 | AT4G02590.3 | 34.559 | 136 | 75 | 1 | 190 | 311 | 89 | 224 | 1.71e-11 | 63.9 |
| Msa0029060 | AT4G02590.2 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.72e-11 | 64.7 |
| Msa0029060 | AT4G02590.1 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.72e-11 | 64.7 |
Find 80 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1_1:+54180625 | Msa0029060:CDS |
| CATTACGGTTGATATATATT+TGG | 0.206272 | 1_1:+54182892 | Msa0029060:three_prime_UTR |
| GTGTAGCTGCCTCCTGATTT+TGG | 0.209571 | 1_1:-54181583 | None:intergenic |
| GATTCTTCAAGTCATGATTT+TGG | 0.211671 | 1_1:+54180661 | Msa0029060:CDS |
| GGAAGTGCAAAAGGCTTAAA+AGG | 0.239961 | 1_1:-54180214 | None:intergenic |
| TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1_1:+54181528 | Msa0029060:CDS |
| ATGTTATATTTACAGGGTTA+TGG | 0.274550 | 1_1:+54182668 | Msa0029060:intron |
| AAACAAGGGTTAAAACTTAA+AGG | 0.276505 | 1_1:-54180296 | None:intergenic |
| TTACTTCCAATTCCAAAATC+AGG | 0.313389 | 1_1:+54181571 | Msa0029060:CDS |
| TGTGTTACTGTTTCTGTGCT+TGG | 0.319925 | 1_1:+54183006 | Msa0029060:three_prime_UTR |
| TGATATATATTTGGTATGTT+TGG | 0.320233 | 1_1:+54182901 | Msa0029060:three_prime_UTR |
| TGTTTGGATTATTTCTAGTT+TGG | 0.323791 | 1_1:+54182917 | Msa0029060:three_prime_UTR |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1_1:+54182718 | Msa0029060:CDS |
| TGTTATATTTACAGGGTTAT+GGG | 0.330987 | 1_1:+54182669 | Msa0029060:intron |
| ATATAACTCTTGAAAATCTA+TGG | 0.338045 | 1_1:+54182970 | Msa0029060:three_prime_UTR |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1_1:+54182799 | Msa0029060:CDS |
| TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1_1:-54180541 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1_1:+54182719 | Msa0029060:CDS |
| TACTACCAAGAGTGTGATAA+TGG | 0.397730 | 1_1:-54180585 | None:intergenic |
| GAAGCTCATATATTTGAAAC+TGG | 0.399824 | 1_1:+54180843 | Msa0029060:CDS |
| ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1_1:+54180556 | Msa0029060:CDS |
| TTGCTTATCTCCAACTGAAT+CGG | 0.400905 | 1_1:-54181503 | None:intergenic |
| TTTGGAATTGGAAGTAAAGA+AGG | 0.407492 | 1_1:-54181565 | None:intergenic |
| ATTGAAAGTTAGAGAAAGAA+AGG | 0.418864 | 1_1:-54180171 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1_1:-54182835 | None:intergenic |
| TGCTTATCTCCAACTGAATC+GGG | 0.432394 | 1_1:-54181502 | None:intergenic |
| GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1_1:+54181529 | Msa0029060:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1_1:+54182682 | Msa0029060:intron |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1_1:-54182809 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1_1:-54181844 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1_1:-54180444 | None:intergenic |
| ATTATTTCTAGTTTGGCCAT+TGG | 0.449578 | 1_1:+54182924 | Msa0029060:three_prime_UTR |
| ACTTGCATGAAAAGTAAGAT+AGG | 0.451879 | 1_1:+54183066 | Msa0029060:three_prime_UTR |
| ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1_1:-54180881 | None:intergenic |
| AAATAGTTAGCTAGCTAGCT+TGG | 0.466352 | 1_1:-54182856 | None:intergenic |
| TTTCTGTGCTTGGATTTGTT+CGG | 0.470565 | 1_1:+54183016 | Msa0029060:three_prime_UTR |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1_1:+54180433 | Msa0029060:CDS |
| CAAATATATATCAACCGTAA+TGG | 0.482289 | 1_1:-54182891 | None:intergenic |
| CAAATGAAGGGAAGTGCAAA+AGG | 0.482349 | 1_1:-54180223 | None:intergenic |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1_1:+54182034 | Msa0029060:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1_1:+54180442 | Msa0029060:CDS |
| ACTTTCACTTACCCAAATGA+AGG | 0.493624 | 1_1:-54180236 | None:intergenic |
| CAACTGAGTATAATATGATT+GGG | 0.500571 | 1_1:+54180557 | Msa0029060:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1_1:+54180610 | Msa0029060:CDS |
| AAAGGCTTAAAAGGGTATCA+TGG | 0.502625 | 1_1:-54180205 | None:intergenic |
| CGGTTCTTGAATCCTTTGAT+CGG | 0.506444 | 1_1:+54183036 | Msa0029060:three_prime_UTR |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1_1:-54182722 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1_1:+54180379 | Msa0029060:CDS |
| AAACGACAGATTACCACATC+GGG | 0.526123 | 1_1:-54181875 | None:intergenic |
| AATAGCCATTATCACACTCT+TGG | 0.527667 | 1_1:+54180580 | Msa0029060:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1_1:-54180411 | None:intergenic |
| TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1_1:+54180818 | Msa0029060:CDS |
| CTCTTTGAATATAGCAACGC+AGG | 0.548222 | 1_1:+54181804 | Msa0029060:intron |
| AAGTTAGAGAAAGAAAGGTA+TGG | 0.549135 | 1_1:-54180166 | None:intergenic |
| TTTCACTACCAAGCTAAACA+AGG | 0.556024 | 1_1:-54180311 | None:intergenic |
| GAAGTGCAAAAGGCTTAAAA+GGG | 0.558314 | 1_1:-54180213 | None:intergenic |
| ACACAGGACTTATTTGTGAC+CGG | 0.561330 | 1_1:+54183089 | Msa0029060:three_prime_UTR |
| CAAGTCTAATAACCGATCAA+AGG | 0.572952 | 1_1:-54183048 | None:intergenic |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1_1:+54180452 | Msa0029060:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1_1:+54182079 | Msa0029060:CDS |
| TGTTATAGGGTCATGCAACA+TGG | 0.586068 | 1_1:+54181476 | Msa0029060:intron |
| CTTTCACTTACCCAAATGAA+GGG | 0.588016 | 1_1:-54180235 | None:intergenic |
| TTCACTACCAAGCTAAACAA+GGG | 0.589987 | 1_1:-54180310 | None:intergenic |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1_1:+54182239 | Msa0029060:intron |
| ACATGGACACCCGATTCAGT+TGG | 0.592687 | 1_1:+54181493 | Msa0029060:CDS |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1_1:+54180443 | Msa0029060:CDS |
| CTTCCAATTCCAAAATCAGG+AGG | 0.615927 | 1_1:+54181574 | Msa0029060:CDS |
| AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1_1:-54180527 | None:intergenic |
| AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1_1:+54180405 | Msa0029060:CDS |
| GGTGGGTACGTACACATGCA+AGG | 0.624545 | 1_1:-54180102 | None:intergenic |
| TAAACGACAGATTACCACAT+CGG | 0.631690 | 1_1:-54181876 | None:intergenic |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1_1:+54182720 | Msa0029060:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1_1:-54182293 | None:intergenic |
| CAGATTACCACATCGGGAGT+CGG | 0.648315 | 1_1:-54181869 | None:intergenic |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1_1:+54182828 | Msa0029060:CDS |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1_1:+54182773 | Msa0029060:CDS |
| TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1_1:+54180872 | Msa0029060:CDS |
| TGAAAATCTATGGTACTCAG+AGG | 0.705901 | 1_1:+54182980 | Msa0029060:three_prime_UTR |
| TGAAAAGTAAGATAGGACAC+AGG | 0.717756 | 1_1:+54183073 | Msa0029060:three_prime_UTR |
| ATTGCTGCCGACTCCCGATG+TGG | 0.723073 | 1_1:+54181862 | Msa0029060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATAAGTTATATATTA+TGG | + | chr1_1:54181088-54181107 | Msa0029060:intron | 10.0% |
| !!! | TATTGTAATAATTTTGTTAT+AGG | + | chr1_1:54181462-54181481 | Msa0029060:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTTATA+GGG | + | chr1_1:54181463-54181482 | Msa0029060:intron | 10.0% |
| !!! | ATTCTGAAATTTATGATTAA+TGG | + | chr1_1:54180980-54180999 | Msa0029060:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1_1:54181261-54181280 | Msa0029060:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+CGG | + | chr1_1:54181261-54181280 | Msa0029060:intron | 15.0% |
| !!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1_1:54181938-54181957 | Msa0029060:intron | 15.0% |
| !!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1_1:54181939-54181958 | Msa0029060:intron | 15.0% |
| !! | ATATATGAGATACTTAAATT+TGG | - | chr1_1:54181966-54181985 | None:intergenic | 15.0% |
| !!! | AAAAAAATTTAGGATTGAAA+AGG | - | chr1_1:54182107-54182126 | None:intergenic | 15.0% |
| !!! | AATCCTAAATTTTTTTTGAA+TGG | + | chr1_1:54182111-54182130 | Msa0029060:intron | 15.0% |
| !!! | AGTTTTTTTTCTATTTTATC+CGG | + | chr1_1:54182161-54182180 | Msa0029060:intron | 15.0% |
| !!! | ATTCTATTATTTTAAGCTTA+AGG | - | chr1_1:54182493-54182512 | None:intergenic | 15.0% |
| !!! | TTTTGTATGTTATATTTACA+GGG | + | chr1_1:54182662-54182681 | Msa0029060:intron | 15.0% |
| !!! | TTTATTTTTATTCTCCATTA+CGG | + | chr1_1:54182877-54182896 | Msa0029060:three_prime_UTR | 15.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1_1:54180496-54180515 | None:intergenic | 20.0% |
| !! | AAATAAGCTGAATAAACTTA+TGG | + | chr1_1:54181192-54181211 | Msa0029060:intron | 20.0% |
| !! | TATCTCTGATAAAATCATAA+GGG | + | chr1_1:54181662-54181681 | Msa0029060:intron | 20.0% |
| !!! | GATTTAACATTAGTTTTCAA+AGG | + | chr1_1:54181900-54181919 | Msa0029060:intron | 20.0% |
| !! | ATCAAAATTCAGTTCATTAA+AGG | - | chr1_1:54182009-54182028 | None:intergenic | 20.0% |
| !! | TTGCCATTCAAAAAAAATTT+AGG | - | chr1_1:54182117-54182136 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCTATTTTATCC+GGG | + | chr1_1:54182162-54182181 | Msa0029060:intron | 20.0% |
| !!! | GTTTTGTATGTTATATTTAC+AGG | + | chr1_1:54182661-54182680 | Msa0029060:intron | 20.0% |
| !! | TGATATATATTTGGTATGTT+TGG | + | chr1_1:54182901-54182920 | Msa0029060:three_prime_UTR | 20.0% |
| !! | ATATAACTCTTGAAAATCTA+TGG | + | chr1_1:54182970-54182989 | Msa0029060:three_prime_UTR | 20.0% |
| !!! | TTGTTCTGTTTTTTGTTTGT+TGG | - | chr1_1:54180126-54180145 | None:intergenic | 25.0% |
| ! | ATTGAAAGTTAGAGAAAGAA+AGG | - | chr1_1:54180174-54180193 | None:intergenic | 25.0% |
| ! | AAACAAGGGTTAAAACTTAA+AGG | - | chr1_1:54180299-54180318 | None:intergenic | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1_1:54180379-54180398 | Msa0029060:CDS | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1_1:54180487-54180506 | None:intergenic | 25.0% |
| ! | ACAACTGAGTATAATATGAT+TGG | + | chr1_1:54180556-54180575 | Msa0029060:CDS | 25.0% |
| ! | CAACTGAGTATAATATGATT+GGG | + | chr1_1:54180557-54180576 | Msa0029060:CDS | 25.0% |
| !!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1_1:54180744-54180763 | Msa0029060:intron | 25.0% |
| ! | AGAGCTTATGAAAATAGTTT+AGG | - | chr1_1:54181224-54181243 | None:intergenic | 25.0% |
| ! | CTATCTCTGATAAAATCATA+AGG | + | chr1_1:54181661-54181680 | Msa0029060:intron | 25.0% |
| ! | GCAAAATTGTGTTAATGAAT+TGG | - | chr1_1:54181767-54181786 | None:intergenic | 25.0% |
| !! | TGCTATATTCAAAGAGTATA+CGG | - | chr1_1:54181800-54181819 | None:intergenic | 25.0% |
| ! | TCACAGTAATGCAATATATA+AGG | - | chr1_1:54182326-54182345 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTACATGCAA+CGG | - | chr1_1:54182459-54182478 | None:intergenic | 25.0% |
| !!! | TCATTTTTTGTCTTTTGAAC+CGG | + | chr1_1:54182582-54182601 | Msa0029060:intron | 25.0% |
| ! | ATGTTATATTTACAGGGTTA+TGG | + | chr1_1:54182668-54182687 | Msa0029060:intron | 25.0% |
| ! | TGTTATATTTACAGGGTTAT+GGG | + | chr1_1:54182669-54182688 | Msa0029060:intron | 25.0% |
| ! | CAAATATATATCAACCGTAA+TGG | - | chr1_1:54182894-54182913 | None:intergenic | 25.0% |
| !! | CATTACGGTTGATATATATT+TGG | + | chr1_1:54182892-54182911 | Msa0029060:three_prime_UTR | 25.0% |
| !!! | TGTTTGGATTATTTCTAGTT+TGG | + | chr1_1:54182917-54182936 | Msa0029060:three_prime_UTR | 25.0% |
| !!! | TCTGTTTTTTGTTTGTTGGT+GGG | - | chr1_1:54180122-54180141 | None:intergenic | 30.0% |
| !!! | TTCTGTTTTTTGTTTGTTGG+TGG | - | chr1_1:54180123-54180142 | None:intergenic | 30.0% |
| AAGTTAGAGAAAGAAAGGTA+TGG | - | chr1_1:54180169-54180188 | None:intergenic | 30.0% | |
| GAGTAATGAAAAAGTGGTAA+AGG | - | chr1_1:54180267-54180286 | None:intergenic | 30.0% | |
| GAAGTTGAGTAATGAAAAAG+TGG | - | chr1_1:54180273-54180292 | None:intergenic | 30.0% | |
| !! | CTTGGTAGTGAAAACAAAAA+TGG | + | chr1_1:54180321-54180340 | Msa0029060:exon | 30.0% |
| GTAGTGAAAACAAAAATGGA+AGG | + | chr1_1:54180325-54180344 | Msa0029060:exon | 30.0% | |
| CAAATTCAAAACCAACACTT+TGG | + | chr1_1:54180433-54180452 | Msa0029060:CDS | 30.0% | |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1_1:54180661-54180680 | Msa0029060:CDS | 30.0% |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1_1:54180688-54180707 | Msa0029060:intron | 30.0% | |
| ! | GAAGCTCATATATTTGAAAC+TGG | + | chr1_1:54180843-54180862 | Msa0029060:CDS | 30.0% |
| ATTAACTAACCTCAGTATAG+TGG | - | chr1_1:54180884-54180903 | None:intergenic | 30.0% | |
| ! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1_1:54180886-54180905 | Msa0029060:intron | 30.0% |
| AATCTATCTTGAAGAGCTTA+TGG | + | chr1_1:54181169-54181188 | Msa0029060:intron | 30.0% | |
| TATGGAAACGTGAAACTATT+TGG | - | chr1_1:54181384-54181403 | None:intergenic | 30.0% | |
| TGCTTCACAATTTGATCATA+TGG | + | chr1_1:54181528-54181547 | Msa0029060:CDS | 30.0% | |
| GCTTCACAATTTGATCATAT+GGG | + | chr1_1:54181529-54181548 | Msa0029060:CDS | 30.0% | |
| ! | TTTGGAATTGGAAGTAAAGA+AGG | - | chr1_1:54181568-54181587 | None:intergenic | 30.0% |
| TTACTTCCAATTCCAAAATC+AGG | + | chr1_1:54181571-54181590 | Msa0029060:CDS | 30.0% | |
| ! | GTATATCTGCATTTTGAATG+TGG | - | chr1_1:54181688-54181707 | None:intergenic | 30.0% |
| ! | TATTCAAAGAGTATACGGTA+AGG | - | chr1_1:54181795-54181814 | None:intergenic | 30.0% |
| !!! | TGAACTGAATTTTGATTTGC+AGG | + | chr1_1:54182013-54182032 | Msa0029060:intron | 30.0% |
| !!! | GAACTGAATTTTGATTTGCA+GGG | + | chr1_1:54182014-54182033 | Msa0029060:intron | 30.0% |
| AATTATTGTGGAGCAGAATT+TGG | - | chr1_1:54182363-54182382 | None:intergenic | 30.0% | |
| ACTCAAGCAAGAAATTATTG+TGG | - | chr1_1:54182375-54182394 | None:intergenic | 30.0% | |
| TTGTTATCTGTACAGTTCAT+AGG | + | chr1_1:54182416-54182435 | Msa0029060:intron | 30.0% | |
| !!! | CATTTTTTGTCTTTTGAACC+GGG | + | chr1_1:54182583-54182602 | Msa0029060:intron | 30.0% |
| !! | ATTATTTCTAGTTTGGCCAT+TGG | + | chr1_1:54182924-54182943 | Msa0029060:three_prime_UTR | 30.0% |
| AGAAAAGAAAAAGTAGCCAA+TGG | - | chr1_1:54182943-54182962 | None:intergenic | 30.0% | |
| ACTTGCATGAAAAGTAAGAT+AGG | + | chr1_1:54183066-54183085 | Msa0029060:three_prime_UTR | 30.0% | |
| !! | AAAGGCTTAAAAGGGTATCA+TGG | - | chr1_1:54180208-54180227 | None:intergenic | 35.0% |
| GAAGTGCAAAAGGCTTAAAA+GGG | - | chr1_1:54180216-54180235 | None:intergenic | 35.0% | |
| ! | TTTTGCACTTCCCTTCATTT+GGG | + | chr1_1:54180225-54180244 | Msa0029060:five_prime_UTR | 35.0% |
| CTTTCACTTACCCAAATGAA+GGG | - | chr1_1:54180238-54180257 | None:intergenic | 35.0% | |
| ACTTTCACTTACCCAAATGA+AGG | - | chr1_1:54180239-54180258 | None:intergenic | 35.0% | |
| !! | GTTTTAACCCTTGTTTAGCT+TGG | + | chr1_1:54180303-54180322 | Msa0029060:five_prime_UTR | 35.0% |
| TTCACTACCAAGCTAAACAA+GGG | - | chr1_1:54180313-54180332 | None:intergenic | 35.0% | |
| TTTCACTACCAAGCTAAACA+AGG | - | chr1_1:54180314-54180333 | None:intergenic | 35.0% | |
| TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1_1:54180544-54180563 | None:intergenic | 35.0% | |
| AATAGCCATTATCACACTCT+TGG | + | chr1_1:54180580-54180599 | Msa0029060:CDS | 35.0% | |
| ! | TACTACCAAGAGTGTGATAA+TGG | - | chr1_1:54180588-54180607 | None:intergenic | 35.0% |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1_1:54180631-54180650 | None:intergenic | 35.0% |
| !!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1_1:54180793-54180812 | Msa0029060:intron | 35.0% |
| TCAAAATCTCCACTATACTG+AGG | + | chr1_1:54180872-54180891 | Msa0029060:CDS | 35.0% | |
| AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1_1:54181237-54181256 | Msa0029060:intron | 35.0% | |
| TTGCTTATCTCCAACTGAAT+CGG | - | chr1_1:54181506-54181525 | None:intergenic | 35.0% | |
| ! | GAGAAAACGTTTGACTTACA+CGG | - | chr1_1:54181642-54181661 | None:intergenic | 35.0% |
| ! | AGTTGACAAGAGCATAGTAT+TGG | - | chr1_1:54181728-54181747 | None:intergenic | 35.0% |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1_1:54181847-54181866 | None:intergenic | 35.0% | |
| TAAACGACAGATTACCACAT+CGG | - | chr1_1:54181879-54181898 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1_1:54182079-54182098 | Msa0029060:CDS | 35.0% | |
| AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1_1:54182229-54182248 | Msa0029060:intron | 35.0% | |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1_1:54182289-54182308 | Msa0029060:CDS | 35.0% |
| ! | CACGTGTCTTTTACTAAAGA+CGG | - | chr1_1:54182557-54182576 | None:intergenic | 35.0% |
| TTAAGTTAGAACAACAAGCC+CGG | - | chr1_1:54182604-54182623 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1_1:54182682-54182701 | Msa0029060:intron | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1_1:54182773-54182792 | Msa0029060:CDS | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1_1:54182812-54182831 | None:intergenic | 35.0% | |
| AAATAGTTAGCTAGCTAGCT+TGG | - | chr1_1:54182859-54182878 | None:intergenic | 35.0% | |
| TGAAAATCTATGGTACTCAG+AGG | + | chr1_1:54182980-54182999 | Msa0029060:three_prime_UTR | 35.0% | |
| ! | TTTCTGTGCTTGGATTTGTT+CGG | + | chr1_1:54183016-54183035 | Msa0029060:three_prime_UTR | 35.0% |
| CAAGTCTAATAACCGATCAA+AGG | - | chr1_1:54183051-54183070 | None:intergenic | 35.0% | |
| TGAAAAGTAAGATAGGACAC+AGG | + | chr1_1:54183073-54183092 | Msa0029060:three_prime_UTR | 35.0% | |
| ! | GGAAGTGCAAAAGGCTTAAA+AGG | - | chr1_1:54180217-54180236 | None:intergenic | 40.0% |
| ! | CAAATGAAGGGAAGTGCAAA+AGG | - | chr1_1:54180226-54180245 | None:intergenic | 40.0% |
| ! | CTTTTGCACTTCCCTTCATT+TGG | + | chr1_1:54180224-54180243 | Msa0029060:five_prime_UTR | 40.0% |
| ! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1_1:54180405-54180424 | Msa0029060:CDS | 40.0% |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1_1:54180414-54180433 | None:intergenic | 40.0% | |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1_1:54180442-54180461 | Msa0029060:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1_1:54180443-54180462 | Msa0029060:CDS | 40.0% |
| AGTGTTTGGAAGATAGCATG+AGG | - | chr1_1:54180530-54180549 | None:intergenic | 40.0% | |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1_1:54180625-54180644 | Msa0029060:CDS | 40.0% |
| !!! | CAAGTCATGATTTTGGTGTC+AGG | + | chr1_1:54180668-54180687 | Msa0029060:CDS | 40.0% |
| !!! | TCATGATTTTGGTGTCAGGA+AGG | + | chr1_1:54180672-54180691 | Msa0029060:CDS | 40.0% |
| !!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1_1:54180792-54180811 | Msa0029060:intron | 40.0% |
| !!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1_1:54180813-54180832 | Msa0029060:CDS | 40.0% |
| TTGGAGAAATGATGAAGGAG+AGG | + | chr1_1:54180818-54180837 | Msa0029060:CDS | 40.0% | |
| GCATAGTGACATAACGCATA+TGG | - | chr1_1:54181402-54181421 | None:intergenic | 40.0% | |
| TGTTATAGGGTCATGCAACA+TGG | + | chr1_1:54181476-54181495 | Msa0029060:intron | 40.0% | |
| TGCTTATCTCCAACTGAATC+GGG | - | chr1_1:54181505-54181524 | None:intergenic | 40.0% | |
| CTTCCAATTCCAAAATCAGG+AGG | + | chr1_1:54181574-54181593 | Msa0029060:CDS | 40.0% | |
| CTCTTTGAATATAGCAACGC+AGG | + | chr1_1:54181804-54181823 | Msa0029060:intron | 40.0% | |
| AAACGACAGATTACCACATC+GGG | - | chr1_1:54181878-54181897 | None:intergenic | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1_1:54182034-54182053 | Msa0029060:intron | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1_1:54182183-54182202 | None:intergenic | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1_1:54182296-54182315 | None:intergenic | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1_1:54182307-54182326 | None:intergenic | 40.0% | |
| TCGATTGTGCCTACATCTTA+CGG | - | chr1_1:54182534-54182553 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1_1:54182718-54182737 | Msa0029060:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1_1:54182719-54182738 | Msa0029060:CDS | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1_1:54182720-54182739 | Msa0029060:CDS | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1_1:54182725-54182744 | None:intergenic | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1_1:54182828-54182847 | Msa0029060:CDS | 40.0% | |
| !! | TGTGTTACTGTTTCTGTGCT+TGG | + | chr1_1:54183006-54183025 | Msa0029060:three_prime_UTR | 40.0% |
| CGGTTCTTGAATCCTTTGAT+CGG | + | chr1_1:54183036-54183055 | Msa0029060:three_prime_UTR | 40.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1_1:54180447-54180466 | None:intergenic | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1_1:54180452-54180471 | Msa0029060:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1_1:54180610-54180629 | Msa0029060:CDS | 45.0% | |
| ! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1_1:54180799-54180818 | Msa0029060:intron | 45.0% |
| !!! | CTGCCTCCTGATTTTGGAAT+TGG | - | chr1_1:54181580-54181599 | None:intergenic | 45.0% |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1_1:54182239-54182258 | Msa0029060:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1_1:54182245-54182264 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1_1:54182799-54182818 | Msa0029060:CDS | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1_1:54182838-54182857 | None:intergenic | 45.0% | |
| !!! | TTTTTTAACTTATTTTAATA+AGG | - | chr1_1:54181117-54181136 | None:intergenic | 5.0% |
| ACATGGACACCCGATTCAGT+TGG | + | chr1_1:54181493-54181512 | Msa0029060:CDS | 50.0% | |
| ! | GTGTAGCTGCCTCCTGATTT+TGG | - | chr1_1:54181586-54181605 | None:intergenic | 50.0% |
| CAGATTACCACATCGGGAGT+CGG | - | chr1_1:54181872-54181891 | None:intergenic | 50.0% | |
| ATCTTACGGCAGAGTGGCTA+TGG | - | chr1_1:54182520-54182539 | None:intergenic | 50.0% | |
| GGTGGGTACGTACACATGCA+AGG | - | chr1_1:54180105-54180124 | None:intergenic | 55.0% | |
| GCCACTCTGCCGTAAGATGT+AGG | + | chr1_1:54182522-54182541 | Msa0029060:intron | 55.0% | |
| GCCTACATCTTACGGCAGAG+TGG | - | chr1_1:54182526-54182545 | None:intergenic | 55.0% | |
| !! | ATTGCTGCCGACTCCCGATG+TGG | + | chr1_1:54181862-54181881 | Msa0029060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54180097 | 54183111 | 54180097 | ID=Msa0029060;Name=Msa0029060 |
| chr1_1 | mRNA | 54180097 | 54183111 | 54180097 | ID=Msa0029060-mRNA-1;Parent=Msa0029060;Name=Msa0029060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|7|243|325 |
| chr1_1 | exon | 54180097 | 54180693 | 54180097 | ID=Msa0029060-mRNA-1:exon:16001;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54180807 | 54180893 | 54180807 | ID=Msa0029060-mRNA-1:exon:16002;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54181484 | 54181642 | 54181484 | ID=Msa0029060-mRNA-1:exon:16003;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54181818 | 54181883 | 54181818 | ID=Msa0029060-mRNA-1:exon:16004;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54182035 | 54182100 | 54182035 | ID=Msa0029060-mRNA-1:exon:16005;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54182251 | 54182310 | 54182251 | ID=Msa0029060-mRNA-1:exon:16006;Parent=Msa0029060-mRNA-1 |
| chr1_1 | exon | 54182683 | 54183111 | 54182683 | ID=Msa0029060-mRNA-1:exon:16007;Parent=Msa0029060-mRNA-1 |
| chr1_1 | five_prime_UTR | 54180097 | 54180339 | 54180097 | ID=Msa0029060-mRNA-1:five_prime_utr;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54180340 | 54180693 | 54180340 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54180807 | 54180893 | 54180807 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54181484 | 54181642 | 54181484 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54181818 | 54181883 | 54181818 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54182035 | 54182100 | 54182035 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54182251 | 54182310 | 54182251 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | CDS | 54182683 | 54182868 | 54182683 | ID=Msa0029060-mRNA-1:cds;Parent=Msa0029060-mRNA-1 |
| chr1_1 | three_prime_UTR | 54182869 | 54183111 | 54182869 | ID=Msa0029060-mRNA-1:three_prime_utr;Parent=Msa0029060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
