Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124530 | sp|Q8S3D5|LRL2_ARATH | 36.923 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.62e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124530 | G7IEF8 | 92.615 | 325 | 24 | 0 | 1 | 325 | 1 | 325 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0124530 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029060 | Msa0124530 | 0.987602 | 7.444107e-171 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124530 | MtrunA17_Chr1g0185741 | 91.749 | 303 | 25 | 0 | 1 | 303 | 1 | 303 | 0.0 | 583 |
| Msa0124530 | MtrunA17_Chr4g0074161 | 36.486 | 148 | 74 | 3 | 190 | 317 | 212 | 359 | 4.14e-18 | 84.3 |
| Msa0124530 | MtrunA17_Chr1g0190731 | 34.307 | 137 | 78 | 1 | 190 | 314 | 199 | 335 | 4.73e-16 | 77.8 |
| Msa0124530 | MtrunA17_Chr1g0184841 | 34.286 | 140 | 80 | 1 | 190 | 317 | 126 | 265 | 1.02e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124530 | AT5G64980.1 | 43.089 | 123 | 68 | 2 | 191 | 311 | 218 | 340 | 7.94e-22 | 94.7 |
| Msa0124530 | AT5G64980.2 | 43.089 | 123 | 68 | 2 | 191 | 311 | 218 | 340 | 7.94e-22 | 94.7 |
| Msa0124530 | AT4G30980.1 | 36.923 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.65e-18 | 84.7 |
| Msa0124530 | AT4G30980.2 | 36.923 | 130 | 80 | 1 | 190 | 317 | 184 | 313 | 2.58e-18 | 85.1 |
| Msa0124530 | AT2G24260.2 | 34.132 | 167 | 83 | 5 | 170 | 317 | 23 | 181 | 4.20e-18 | 82.8 |
| Msa0124530 | AT2G24260.1 | 34.731 | 167 | 82 | 5 | 170 | 317 | 126 | 284 | 1.85e-17 | 82.4 |
| Msa0124530 | AT5G58010.1 | 33.784 | 148 | 74 | 4 | 190 | 315 | 105 | 250 | 7.27e-15 | 74.3 |
| Msa0124530 | AT1G03040.2 | 30.457 | 197 | 117 | 4 | 133 | 311 | 79 | 273 | 4.70e-13 | 68.9 |
| Msa0124530 | AT1G03040.1 | 36.434 | 129 | 75 | 1 | 190 | 311 | 150 | 278 | 1.87e-12 | 67.4 |
| Msa0124530 | AT4G02590.3 | 34.559 | 136 | 75 | 1 | 190 | 311 | 89 | 224 | 1.71e-11 | 63.9 |
| Msa0124530 | AT4G02590.2 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.72e-11 | 64.7 |
| Msa0124530 | AT4G02590.1 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.72e-11 | 64.7 |
Find 80 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1_3:+52351505 | Msa0124530:CDS |
| CATTACGGTTGATATATATT+TGG | 0.206272 | 1_3:+52353772 | Msa0124530:three_prime_UTR |
| GTGTAGCTGCCTCCTGATTT+TGG | 0.209571 | 1_3:-52352463 | None:intergenic |
| GATTCTTCAAGTCATGATTT+TGG | 0.211671 | 1_3:+52351541 | Msa0124530:CDS |
| GGAAGTGCAAAAGGCTTAAA+AGG | 0.239961 | 1_3:-52351094 | None:intergenic |
| TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1_3:+52352408 | Msa0124530:CDS |
| ATGTTATATTTACAGGGTTA+TGG | 0.274550 | 1_3:+52353548 | Msa0124530:intron |
| AAACAAGGGTTAAAACTTAA+AGG | 0.276505 | 1_3:-52351176 | None:intergenic |
| TTACTTCCAATTCCAAAATC+AGG | 0.313389 | 1_3:+52352451 | Msa0124530:CDS |
| TGTGTTACTGTTTCTGTGCT+TGG | 0.319925 | 1_3:+52353886 | Msa0124530:three_prime_UTR |
| TGATATATATTTGGTATGTT+TGG | 0.320233 | 1_3:+52353781 | Msa0124530:three_prime_UTR |
| TGTTTGGATTATTTCTAGTT+TGG | 0.323791 | 1_3:+52353797 | Msa0124530:three_prime_UTR |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1_3:+52353598 | Msa0124530:CDS |
| TGTTATATTTACAGGGTTAT+GGG | 0.330987 | 1_3:+52353549 | Msa0124530:intron |
| ATATAACTCTTGAAAATCTA+TGG | 0.338045 | 1_3:+52353850 | Msa0124530:three_prime_UTR |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1_3:+52353679 | Msa0124530:CDS |
| TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1_3:-52351421 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1_3:+52353599 | Msa0124530:CDS |
| TACTACCAAGAGTGTGATAA+TGG | 0.397730 | 1_3:-52351465 | None:intergenic |
| GAAGCTCATATATTTGAAAC+TGG | 0.399824 | 1_3:+52351723 | Msa0124530:CDS |
| ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1_3:+52351436 | Msa0124530:CDS |
| TTGCTTATCTCCAACTGAAT+CGG | 0.400905 | 1_3:-52352383 | None:intergenic |
| TTTGGAATTGGAAGTAAAGA+AGG | 0.407492 | 1_3:-52352445 | None:intergenic |
| ATTGAAAGTTAGAGAAAGAA+AGG | 0.418864 | 1_3:-52351051 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1_3:-52353715 | None:intergenic |
| TGCTTATCTCCAACTGAATC+GGG | 0.432394 | 1_3:-52352382 | None:intergenic |
| GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1_3:+52352409 | Msa0124530:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1_3:+52353562 | Msa0124530:intron |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1_3:-52353689 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1_3:-52352724 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1_3:-52351324 | None:intergenic |
| ATTATTTCTAGTTTGGCCAT+TGG | 0.449578 | 1_3:+52353804 | Msa0124530:three_prime_UTR |
| ACTTGCATGAAAAGTAAGAT+AGG | 0.451879 | 1_3:+52353946 | Msa0124530:three_prime_UTR |
| ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1_3:-52351761 | None:intergenic |
| AAATAGTTAGCTAGCTAGCT+TGG | 0.466352 | 1_3:-52353736 | None:intergenic |
| TTTCTGTGCTTGGATTTGTT+CGG | 0.470565 | 1_3:+52353896 | Msa0124530:three_prime_UTR |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1_3:+52351313 | Msa0124530:CDS |
| CAAATATATATCAACCGTAA+TGG | 0.482289 | 1_3:-52353771 | None:intergenic |
| CAAATGAAGGGAAGTGCAAA+AGG | 0.482349 | 1_3:-52351103 | None:intergenic |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1_3:+52352914 | Msa0124530:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1_3:+52351322 | Msa0124530:CDS |
| ACTTTCACTTACCCAAATGA+AGG | 0.493624 | 1_3:-52351116 | None:intergenic |
| CAACTGAGTATAATATGATT+GGG | 0.500571 | 1_3:+52351437 | Msa0124530:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1_3:+52351490 | Msa0124530:CDS |
| AAAGGCTTAAAAGGGTATCA+TGG | 0.502625 | 1_3:-52351085 | None:intergenic |
| CGGTTCTTGAATCCTTTGAT+CGG | 0.506444 | 1_3:+52353916 | Msa0124530:three_prime_UTR |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1_3:-52353602 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1_3:+52351259 | Msa0124530:CDS |
| AAACGACAGATTACCACATC+GGG | 0.526123 | 1_3:-52352755 | None:intergenic |
| AATAGCCATTATCACACTCT+TGG | 0.527667 | 1_3:+52351460 | Msa0124530:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1_3:-52351291 | None:intergenic |
| TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1_3:+52351698 | Msa0124530:CDS |
| CTCTTTGAATATAGCAACGC+AGG | 0.548222 | 1_3:+52352684 | Msa0124530:intron |
| AAGTTAGAGAAAGAAAGGTA+TGG | 0.549135 | 1_3:-52351046 | None:intergenic |
| TTTCACTACCAAGCTAAACA+AGG | 0.556024 | 1_3:-52351191 | None:intergenic |
| GAAGTGCAAAAGGCTTAAAA+GGG | 0.558314 | 1_3:-52351093 | None:intergenic |
| ACACAGGACTTATTTGTGAC+CGG | 0.561330 | 1_3:+52353969 | Msa0124530:three_prime_UTR |
| CAAGTCTAATAACCGATCAA+AGG | 0.572952 | 1_3:-52353928 | None:intergenic |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1_3:+52351332 | Msa0124530:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1_3:+52352959 | Msa0124530:CDS |
| TGTTATAGGGTCATGCAACA+TGG | 0.586068 | 1_3:+52352356 | Msa0124530:intron |
| CTTTCACTTACCCAAATGAA+GGG | 0.588016 | 1_3:-52351115 | None:intergenic |
| TTCACTACCAAGCTAAACAA+GGG | 0.589987 | 1_3:-52351190 | None:intergenic |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1_3:+52353119 | Msa0124530:intron |
| ACATGGACACCCGATTCAGT+TGG | 0.592687 | 1_3:+52352373 | Msa0124530:CDS |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1_3:+52351323 | Msa0124530:CDS |
| CTTCCAATTCCAAAATCAGG+AGG | 0.615927 | 1_3:+52352454 | Msa0124530:CDS |
| AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1_3:-52351407 | None:intergenic |
| AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1_3:+52351285 | Msa0124530:CDS |
| GGTGGGTACGTACACATGCA+AGG | 0.624545 | 1_3:-52350982 | None:intergenic |
| TAAACGACAGATTACCACAT+CGG | 0.631690 | 1_3:-52352756 | None:intergenic |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1_3:+52353600 | Msa0124530:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1_3:-52353173 | None:intergenic |
| CAGATTACCACATCGGGAGT+CGG | 0.648315 | 1_3:-52352749 | None:intergenic |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1_3:+52353708 | Msa0124530:CDS |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1_3:+52353653 | Msa0124530:CDS |
| TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1_3:+52351752 | Msa0124530:CDS |
| TGAAAATCTATGGTACTCAG+AGG | 0.705901 | 1_3:+52353860 | Msa0124530:three_prime_UTR |
| TGAAAAGTAAGATAGGACAC+AGG | 0.717756 | 1_3:+52353953 | Msa0124530:three_prime_UTR |
| ATTGCTGCCGACTCCCGATG+TGG | 0.723073 | 1_3:+52352742 | Msa0124530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATAAGTTATATATTA+TGG | + | chr1_3:52351968-52351987 | Msa0124530:intron | 10.0% |
| !!! | TATTGTAATAATTTTGTTAT+AGG | + | chr1_3:52352342-52352361 | Msa0124530:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTTATA+GGG | + | chr1_3:52352343-52352362 | Msa0124530:intron | 10.0% |
| !!! | ATTCTGAAATTTATGATTAA+TGG | + | chr1_3:52351860-52351879 | Msa0124530:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1_3:52352141-52352160 | Msa0124530:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+CGG | + | chr1_3:52352141-52352160 | Msa0124530:intron | 15.0% |
| !!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1_3:52352818-52352837 | Msa0124530:intron | 15.0% |
| !!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1_3:52352819-52352838 | Msa0124530:intron | 15.0% |
| !! | ATATATGAGATACTTAAATT+TGG | - | chr1_3:52352846-52352865 | None:intergenic | 15.0% |
| !!! | AAAAAAATTTAGGATTGAAA+AGG | - | chr1_3:52352987-52353006 | None:intergenic | 15.0% |
| !!! | AATCCTAAATTTTTTTTGAA+TGG | + | chr1_3:52352991-52353010 | Msa0124530:intron | 15.0% |
| !!! | AGTTTTTTTTCTATTTTATC+CGG | + | chr1_3:52353041-52353060 | Msa0124530:intron | 15.0% |
| !!! | ATTCTATTATTTTAAGCTTA+AGG | - | chr1_3:52353373-52353392 | None:intergenic | 15.0% |
| !!! | TTTTGTATGTTATATTTACA+GGG | + | chr1_3:52353542-52353561 | Msa0124530:intron | 15.0% |
| !!! | TTTATTTTTATTCTCCATTA+CGG | + | chr1_3:52353757-52353776 | Msa0124530:three_prime_UTR | 15.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1_3:52351376-52351395 | None:intergenic | 20.0% |
| !! | AAATAAGCTGAATAAACTTA+TGG | + | chr1_3:52352072-52352091 | Msa0124530:intron | 20.0% |
| !! | TATCTCTGATAAAATCATAA+GGG | + | chr1_3:52352542-52352561 | Msa0124530:intron | 20.0% |
| !!! | GATTTAACATTAGTTTTCAA+AGG | + | chr1_3:52352780-52352799 | Msa0124530:intron | 20.0% |
| !! | ATCAAAATTCAGTTCATTAA+AGG | - | chr1_3:52352889-52352908 | None:intergenic | 20.0% |
| !! | TTGCCATTCAAAAAAAATTT+AGG | - | chr1_3:52352997-52353016 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCTATTTTATCC+GGG | + | chr1_3:52353042-52353061 | Msa0124530:intron | 20.0% |
| !!! | GTTTTGTATGTTATATTTAC+AGG | + | chr1_3:52353541-52353560 | Msa0124530:intron | 20.0% |
| !! | TGATATATATTTGGTATGTT+TGG | + | chr1_3:52353781-52353800 | Msa0124530:three_prime_UTR | 20.0% |
| !! | ATATAACTCTTGAAAATCTA+TGG | + | chr1_3:52353850-52353869 | Msa0124530:three_prime_UTR | 20.0% |
| !!! | TTGTTCTGTTTTTTGTTTGT+TGG | - | chr1_3:52351006-52351025 | None:intergenic | 25.0% |
| ! | ATTGAAAGTTAGAGAAAGAA+AGG | - | chr1_3:52351054-52351073 | None:intergenic | 25.0% |
| ! | AAACAAGGGTTAAAACTTAA+AGG | - | chr1_3:52351179-52351198 | None:intergenic | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1_3:52351259-52351278 | Msa0124530:CDS | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1_3:52351367-52351386 | None:intergenic | 25.0% |
| ! | ACAACTGAGTATAATATGAT+TGG | + | chr1_3:52351436-52351455 | Msa0124530:CDS | 25.0% |
| ! | CAACTGAGTATAATATGATT+GGG | + | chr1_3:52351437-52351456 | Msa0124530:CDS | 25.0% |
| !!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1_3:52351624-52351643 | Msa0124530:intron | 25.0% |
| ! | AGAGCTTATGAAAATAGTTT+AGG | - | chr1_3:52352104-52352123 | None:intergenic | 25.0% |
| ! | CTATCTCTGATAAAATCATA+AGG | + | chr1_3:52352541-52352560 | Msa0124530:intron | 25.0% |
| ! | GCAAAATTGTGTTAATGAAT+TGG | - | chr1_3:52352647-52352666 | None:intergenic | 25.0% |
| !! | TGCTATATTCAAAGAGTATA+CGG | - | chr1_3:52352680-52352699 | None:intergenic | 25.0% |
| ! | TCACAGTAATGCAATATATA+AGG | - | chr1_3:52353206-52353225 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTACATGCAA+CGG | - | chr1_3:52353339-52353358 | None:intergenic | 25.0% |
| !!! | TCATTTTTTGTCTTTTGAAC+CGG | + | chr1_3:52353462-52353481 | Msa0124530:intron | 25.0% |
| ! | ATGTTATATTTACAGGGTTA+TGG | + | chr1_3:52353548-52353567 | Msa0124530:intron | 25.0% |
| ! | TGTTATATTTACAGGGTTAT+GGG | + | chr1_3:52353549-52353568 | Msa0124530:intron | 25.0% |
| ! | CAAATATATATCAACCGTAA+TGG | - | chr1_3:52353774-52353793 | None:intergenic | 25.0% |
| !! | CATTACGGTTGATATATATT+TGG | + | chr1_3:52353772-52353791 | Msa0124530:three_prime_UTR | 25.0% |
| !!! | TGTTTGGATTATTTCTAGTT+TGG | + | chr1_3:52353797-52353816 | Msa0124530:three_prime_UTR | 25.0% |
| !!! | TCTGTTTTTTGTTTGTTGGT+GGG | - | chr1_3:52351002-52351021 | None:intergenic | 30.0% |
| !!! | TTCTGTTTTTTGTTTGTTGG+TGG | - | chr1_3:52351003-52351022 | None:intergenic | 30.0% |
| AAGTTAGAGAAAGAAAGGTA+TGG | - | chr1_3:52351049-52351068 | None:intergenic | 30.0% | |
| GAGTAATGAAAAAGTGGTAA+AGG | - | chr1_3:52351147-52351166 | None:intergenic | 30.0% | |
| GAAGTTGAGTAATGAAAAAG+TGG | - | chr1_3:52351153-52351172 | None:intergenic | 30.0% | |
| !! | CTTGGTAGTGAAAACAAAAA+TGG | + | chr1_3:52351201-52351220 | Msa0124530:exon | 30.0% |
| GTAGTGAAAACAAAAATGGA+AGG | + | chr1_3:52351205-52351224 | Msa0124530:exon | 30.0% | |
| CAAATTCAAAACCAACACTT+TGG | + | chr1_3:52351313-52351332 | Msa0124530:CDS | 30.0% | |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1_3:52351541-52351560 | Msa0124530:CDS | 30.0% |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1_3:52351568-52351587 | Msa0124530:intron | 30.0% | |
| ! | GAAGCTCATATATTTGAAAC+TGG | + | chr1_3:52351723-52351742 | Msa0124530:CDS | 30.0% |
| ATTAACTAACCTCAGTATAG+TGG | - | chr1_3:52351764-52351783 | None:intergenic | 30.0% | |
| ! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1_3:52351766-52351785 | Msa0124530:intron | 30.0% |
| AATCTATCTTGAAGAGCTTA+TGG | + | chr1_3:52352049-52352068 | Msa0124530:intron | 30.0% | |
| TATGGAAACGTGAAACTATT+TGG | - | chr1_3:52352264-52352283 | None:intergenic | 30.0% | |
| TGCTTCACAATTTGATCATA+TGG | + | chr1_3:52352408-52352427 | Msa0124530:CDS | 30.0% | |
| GCTTCACAATTTGATCATAT+GGG | + | chr1_3:52352409-52352428 | Msa0124530:CDS | 30.0% | |
| ! | TTTGGAATTGGAAGTAAAGA+AGG | - | chr1_3:52352448-52352467 | None:intergenic | 30.0% |
| TTACTTCCAATTCCAAAATC+AGG | + | chr1_3:52352451-52352470 | Msa0124530:CDS | 30.0% | |
| ! | GTATATCTGCATTTTGAATG+TGG | - | chr1_3:52352568-52352587 | None:intergenic | 30.0% |
| ! | TATTCAAAGAGTATACGGTA+AGG | - | chr1_3:52352675-52352694 | None:intergenic | 30.0% |
| !!! | TGAACTGAATTTTGATTTGC+AGG | + | chr1_3:52352893-52352912 | Msa0124530:intron | 30.0% |
| !!! | GAACTGAATTTTGATTTGCA+GGG | + | chr1_3:52352894-52352913 | Msa0124530:intron | 30.0% |
| AATTATTGTGGAGCAGAATT+TGG | - | chr1_3:52353243-52353262 | None:intergenic | 30.0% | |
| ACTCAAGCAAGAAATTATTG+TGG | - | chr1_3:52353255-52353274 | None:intergenic | 30.0% | |
| TTGTTATCTGTACAGTTCAT+AGG | + | chr1_3:52353296-52353315 | Msa0124530:intron | 30.0% | |
| !!! | CATTTTTTGTCTTTTGAACC+GGG | + | chr1_3:52353463-52353482 | Msa0124530:intron | 30.0% |
| !! | ATTATTTCTAGTTTGGCCAT+TGG | + | chr1_3:52353804-52353823 | Msa0124530:three_prime_UTR | 30.0% |
| AGAAAAGAAAAAGTAGCCAA+TGG | - | chr1_3:52353823-52353842 | None:intergenic | 30.0% | |
| ACTTGCATGAAAAGTAAGAT+AGG | + | chr1_3:52353946-52353965 | Msa0124530:three_prime_UTR | 30.0% | |
| !! | AAAGGCTTAAAAGGGTATCA+TGG | - | chr1_3:52351088-52351107 | None:intergenic | 35.0% |
| GAAGTGCAAAAGGCTTAAAA+GGG | - | chr1_3:52351096-52351115 | None:intergenic | 35.0% | |
| ! | TTTTGCACTTCCCTTCATTT+GGG | + | chr1_3:52351105-52351124 | Msa0124530:five_prime_UTR | 35.0% |
| CTTTCACTTACCCAAATGAA+GGG | - | chr1_3:52351118-52351137 | None:intergenic | 35.0% | |
| ACTTTCACTTACCCAAATGA+AGG | - | chr1_3:52351119-52351138 | None:intergenic | 35.0% | |
| !! | GTTTTAACCCTTGTTTAGCT+TGG | + | chr1_3:52351183-52351202 | Msa0124530:five_prime_UTR | 35.0% |
| TTCACTACCAAGCTAAACAA+GGG | - | chr1_3:52351193-52351212 | None:intergenic | 35.0% | |
| TTTCACTACCAAGCTAAACA+AGG | - | chr1_3:52351194-52351213 | None:intergenic | 35.0% | |
| TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1_3:52351424-52351443 | None:intergenic | 35.0% | |
| AATAGCCATTATCACACTCT+TGG | + | chr1_3:52351460-52351479 | Msa0124530:CDS | 35.0% | |
| ! | TACTACCAAGAGTGTGATAA+TGG | - | chr1_3:52351468-52351487 | None:intergenic | 35.0% |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1_3:52351511-52351530 | None:intergenic | 35.0% |
| !!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1_3:52351673-52351692 | Msa0124530:intron | 35.0% |
| TCAAAATCTCCACTATACTG+AGG | + | chr1_3:52351752-52351771 | Msa0124530:CDS | 35.0% | |
| AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1_3:52352117-52352136 | Msa0124530:intron | 35.0% | |
| TTGCTTATCTCCAACTGAAT+CGG | - | chr1_3:52352386-52352405 | None:intergenic | 35.0% | |
| ! | GAGAAAACGTTTGACTTACA+CGG | - | chr1_3:52352522-52352541 | None:intergenic | 35.0% |
| ! | AGTTGACAAGAGCATAGTAT+TGG | - | chr1_3:52352608-52352627 | None:intergenic | 35.0% |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1_3:52352727-52352746 | None:intergenic | 35.0% | |
| TAAACGACAGATTACCACAT+CGG | - | chr1_3:52352759-52352778 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1_3:52352959-52352978 | Msa0124530:CDS | 35.0% | |
| AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1_3:52353109-52353128 | Msa0124530:intron | 35.0% | |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1_3:52353169-52353188 | Msa0124530:CDS | 35.0% |
| ! | CACGTGTCTTTTACTAAAGA+CGG | - | chr1_3:52353437-52353456 | None:intergenic | 35.0% |
| TTAAGTTAGAACAACAAGCC+CGG | - | chr1_3:52353484-52353503 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1_3:52353562-52353581 | Msa0124530:intron | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1_3:52353653-52353672 | Msa0124530:CDS | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1_3:52353692-52353711 | None:intergenic | 35.0% | |
| AAATAGTTAGCTAGCTAGCT+TGG | - | chr1_3:52353739-52353758 | None:intergenic | 35.0% | |
| TGAAAATCTATGGTACTCAG+AGG | + | chr1_3:52353860-52353879 | Msa0124530:three_prime_UTR | 35.0% | |
| ! | TTTCTGTGCTTGGATTTGTT+CGG | + | chr1_3:52353896-52353915 | Msa0124530:three_prime_UTR | 35.0% |
| CAAGTCTAATAACCGATCAA+AGG | - | chr1_3:52353931-52353950 | None:intergenic | 35.0% | |
| TGAAAAGTAAGATAGGACAC+AGG | + | chr1_3:52353953-52353972 | Msa0124530:three_prime_UTR | 35.0% | |
| ! | GGAAGTGCAAAAGGCTTAAA+AGG | - | chr1_3:52351097-52351116 | None:intergenic | 40.0% |
| ! | CAAATGAAGGGAAGTGCAAA+AGG | - | chr1_3:52351106-52351125 | None:intergenic | 40.0% |
| ! | CTTTTGCACTTCCCTTCATT+TGG | + | chr1_3:52351104-52351123 | Msa0124530:five_prime_UTR | 40.0% |
| ! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1_3:52351285-52351304 | Msa0124530:CDS | 40.0% |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1_3:52351294-52351313 | None:intergenic | 40.0% | |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1_3:52351322-52351341 | Msa0124530:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1_3:52351323-52351342 | Msa0124530:CDS | 40.0% |
| AGTGTTTGGAAGATAGCATG+AGG | - | chr1_3:52351410-52351429 | None:intergenic | 40.0% | |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1_3:52351505-52351524 | Msa0124530:CDS | 40.0% |
| !!! | CAAGTCATGATTTTGGTGTC+AGG | + | chr1_3:52351548-52351567 | Msa0124530:CDS | 40.0% |
| !!! | TCATGATTTTGGTGTCAGGA+AGG | + | chr1_3:52351552-52351571 | Msa0124530:CDS | 40.0% |
| !!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1_3:52351672-52351691 | Msa0124530:intron | 40.0% |
| !!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1_3:52351693-52351712 | Msa0124530:CDS | 40.0% |
| TTGGAGAAATGATGAAGGAG+AGG | + | chr1_3:52351698-52351717 | Msa0124530:CDS | 40.0% | |
| GCATAGTGACATAACGCATA+TGG | - | chr1_3:52352282-52352301 | None:intergenic | 40.0% | |
| TGTTATAGGGTCATGCAACA+TGG | + | chr1_3:52352356-52352375 | Msa0124530:intron | 40.0% | |
| TGCTTATCTCCAACTGAATC+GGG | - | chr1_3:52352385-52352404 | None:intergenic | 40.0% | |
| CTTCCAATTCCAAAATCAGG+AGG | + | chr1_3:52352454-52352473 | Msa0124530:CDS | 40.0% | |
| CTCTTTGAATATAGCAACGC+AGG | + | chr1_3:52352684-52352703 | Msa0124530:intron | 40.0% | |
| AAACGACAGATTACCACATC+GGG | - | chr1_3:52352758-52352777 | None:intergenic | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1_3:52352914-52352933 | Msa0124530:intron | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1_3:52353063-52353082 | None:intergenic | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1_3:52353176-52353195 | None:intergenic | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1_3:52353187-52353206 | None:intergenic | 40.0% | |
| TCGATTGTGCCTACATCTTA+CGG | - | chr1_3:52353414-52353433 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1_3:52353598-52353617 | Msa0124530:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1_3:52353599-52353618 | Msa0124530:CDS | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1_3:52353600-52353619 | Msa0124530:CDS | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1_3:52353605-52353624 | None:intergenic | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1_3:52353708-52353727 | Msa0124530:CDS | 40.0% | |
| !! | TGTGTTACTGTTTCTGTGCT+TGG | + | chr1_3:52353886-52353905 | Msa0124530:three_prime_UTR | 40.0% |
| CGGTTCTTGAATCCTTTGAT+CGG | + | chr1_3:52353916-52353935 | Msa0124530:three_prime_UTR | 40.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1_3:52351327-52351346 | None:intergenic | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1_3:52351332-52351351 | Msa0124530:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1_3:52351490-52351509 | Msa0124530:CDS | 45.0% | |
| ! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1_3:52351679-52351698 | Msa0124530:intron | 45.0% |
| !!! | CTGCCTCCTGATTTTGGAAT+TGG | - | chr1_3:52352460-52352479 | None:intergenic | 45.0% |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1_3:52353119-52353138 | Msa0124530:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1_3:52353125-52353144 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1_3:52353679-52353698 | Msa0124530:CDS | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1_3:52353718-52353737 | None:intergenic | 45.0% | |
| !!! | TTTTTTAACTTATTTTAATA+AGG | - | chr1_3:52351997-52352016 | None:intergenic | 5.0% |
| ACATGGACACCCGATTCAGT+TGG | + | chr1_3:52352373-52352392 | Msa0124530:CDS | 50.0% | |
| ! | GTGTAGCTGCCTCCTGATTT+TGG | - | chr1_3:52352466-52352485 | None:intergenic | 50.0% |
| CAGATTACCACATCGGGAGT+CGG | - | chr1_3:52352752-52352771 | None:intergenic | 50.0% | |
| ATCTTACGGCAGAGTGGCTA+TGG | - | chr1_3:52353400-52353419 | None:intergenic | 50.0% | |
| GGTGGGTACGTACACATGCA+AGG | - | chr1_3:52350985-52351004 | None:intergenic | 55.0% | |
| GCCACTCTGCCGTAAGATGT+AGG | + | chr1_3:52353402-52353421 | Msa0124530:intron | 55.0% | |
| GCCTACATCTTACGGCAGAG+TGG | - | chr1_3:52353406-52353425 | None:intergenic | 55.0% | |
| !! | ATTGCTGCCGACTCCCGATG+TGG | + | chr1_3:52352742-52352761 | Msa0124530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52350977 | 52353991 | 52350977 | ID=Msa0124530;Name=Msa0124530 |
| chr1_3 | mRNA | 52350977 | 52353991 | 52350977 | ID=Msa0124530-mRNA-1;Parent=Msa0124530;Name=Msa0124530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|7|243|325 |
| chr1_3 | exon | 52350977 | 52351573 | 52350977 | ID=Msa0124530-mRNA-1:exon:16022;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52351687 | 52351773 | 52351687 | ID=Msa0124530-mRNA-1:exon:16023;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52352364 | 52352522 | 52352364 | ID=Msa0124530-mRNA-1:exon:16024;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52352698 | 52352763 | 52352698 | ID=Msa0124530-mRNA-1:exon:16025;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52352915 | 52352980 | 52352915 | ID=Msa0124530-mRNA-1:exon:16026;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52353131 | 52353190 | 52353131 | ID=Msa0124530-mRNA-1:exon:16027;Parent=Msa0124530-mRNA-1 |
| chr1_3 | exon | 52353563 | 52353991 | 52353563 | ID=Msa0124530-mRNA-1:exon:16028;Parent=Msa0124530-mRNA-1 |
| chr1_3 | five_prime_UTR | 52350977 | 52351219 | 52350977 | ID=Msa0124530-mRNA-1:five_prime_utr;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52351220 | 52351573 | 52351220 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52351687 | 52351773 | 52351687 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52352364 | 52352522 | 52352364 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52352698 | 52352763 | 52352698 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52352915 | 52352980 | 52352915 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52353131 | 52353190 | 52353131 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | CDS | 52353563 | 52353748 | 52353563 | ID=Msa0124530-mRNA-1:cds;Parent=Msa0124530-mRNA-1 |
| chr1_3 | three_prime_UTR | 52353749 | 52353991 | 52353749 | ID=Msa0124530-mRNA-1:three_prime_utr;Parent=Msa0124530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
