Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030010 | XP_003590783.1 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030010 | sp|Q0WUY1|NADKC_ARATH | 65.553 | 479 | 155 | 3 | 42 | 517 | 59 | 530 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030010 | G7I3Y0 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030010 | Msa0125240 | 0.984293 | 3.850988e-160 | -8.615850e-47 |
| Msa0030010 | Msa0161990 | 0.859643 | 3.588983e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030010 | MtrunA17_Chr1g0187021 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Msa0030010 | MtrunA17_Chr1g0187051 | 80.230 | 521 | 85 | 4 | 1 | 520 | 1 | 504 | 0.0 | 846 |
| Msa0030010 | MtrunA17_Chr1g0187071 | 70.334 | 509 | 133 | 4 | 12 | 520 | 28 | 518 | 0.0 | 686 |
| Msa0030010 | MtrunA17_Chr1g0184551 | 62.023 | 524 | 178 | 8 | 1 | 516 | 1 | 511 | 0.0 | 646 |
| Msa0030010 | MtrunA17_Chr7g0260781 | 68.508 | 362 | 103 | 4 | 158 | 516 | 17 | 370 | 1.73e-165 | 473 |
| Msa0030010 | MtrunA17_Chr7g0260791 | 48.667 | 150 | 72 | 2 | 15 | 163 | 28 | 173 | 8.47e-41 | 145 |
| Msa0030010 | MtrunA17_Chr1g0187031 | 90.385 | 52 | 5 | 0 | 17 | 68 | 4 | 55 | 6.61e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030010 | AT1G06750.3 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0030010 | AT1G06750.2 | 62.868 | 509 | 169 | 8 | 13 | 516 | 21 | 514 | 0.0 | 613 |
| Msa0030010 | AT1G06750.1 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0030010 | AT1G04280.2 | 65.553 | 479 | 155 | 3 | 42 | 517 | 5 | 476 | 0.0 | 606 |
| Msa0030010 | AT1G04280.1 | 65.553 | 479 | 155 | 3 | 42 | 517 | 59 | 530 | 0.0 | 606 |
| Msa0030010 | AT2G30630.1 | 61.569 | 510 | 176 | 8 | 12 | 516 | 27 | 521 | 0.0 | 600 |
| Msa0030010 | AT2G30630.2 | 59.322 | 531 | 175 | 9 | 12 | 516 | 27 | 542 | 0.0 | 589 |
| Msa0030010 | AT2G30630.3 | 60.104 | 386 | 134 | 8 | 12 | 392 | 27 | 397 | 6.42e-148 | 430 |
Find 147 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAACAAGTTTGCAATATT+TGG | 0.024471 | 1_1:+55882829 | None:intergenic |
| TTTCACACAAAACAGCTTAT+TGG | 0.163896 | 1_1:-55882669 | Msa0030010:intron |
| CGGCTGCTGCCTCGCGTTAC+CGG | 0.199019 | 1_1:-55887046 | Msa0030010:CDS |
| ATGGCTTTGGCAGATCATTT+TGG | 0.259344 | 1_1:-55883569 | Msa0030010:intron |
| TCTTGTCACCTTCAGATTCT+TGG | 0.267503 | 1_1:+55884136 | None:intergenic |
| GTCAGCTACAGCTTCTTCTT+TGG | 0.273218 | 1_1:-55887287 | Msa0030010:five_prime_UTR |
| CCATCCTGAGACTTGTAAAT+TGG | 0.284896 | 1_1:-55882240 | Msa0030010:three_prime_UTR |
| GTTCTGGCTGCCTCCTTTGC+CGG | 0.296647 | 1_1:-55887080 | Msa0030010:CDS |
| TGAATCTCTCTATGTCAAAT+TGG | 0.306179 | 1_1:-55884631 | Msa0030010:CDS |
| CAAAGCATCTTTGAATATCT+TGG | 0.313200 | 1_1:-55884669 | Msa0030010:CDS |
| TCAACAAGTTTGCAATATTT+GGG | 0.315252 | 1_1:+55882830 | None:intergenic |
| ATATGTAAGTAGATGAAATA+TGG | 0.325496 | 1_1:-55887392 | Msa0030010:five_prime_UTR |
| AGCAGCCGCGGCAATCAAAC+CGG | 0.340708 | 1_1:+55887061 | None:intergenic |
| TCTTCTTCTGCTTCATTCAC+TGG | 0.342257 | 1_1:+55883142 | None:intergenic |
| CGTCCGCCTCACACATGTTC+TGG | 0.358002 | 1_1:-55887096 | Msa0030010:CDS |
| GATGCTTTGATCACATCCTT+TGG | 0.362853 | 1_1:+55884683 | None:intergenic |
| CATGCTTCAAACTGCTGAAT+TGG | 0.363240 | 1_1:-55883448 | Msa0030010:intron |
| CAATGGAACCTGGTTCTGTT+TGG | 0.366252 | 1_1:-55882524 | Msa0030010:CDS |
| GTACAATTAATGAAAATTAC+TGG | 0.366745 | 1_1:-55883168 | Msa0030010:CDS |
| CAAGTTGATAAAACAGAATC+TGG | 0.373214 | 1_1:-55886981 | Msa0030010:CDS |
| ACAGAACCAGGTTCCATTGC+TGG | 0.377964 | 1_1:+55882528 | None:intergenic |
| TTCTGAACACTTGACCTTGA+AGG | 0.379470 | 1_1:+55882483 | None:intergenic |
| CCAACTAGCTCAATTCTATA+AGG | 0.380537 | 1_1:+55883073 | None:intergenic |
| CATGGTGACCCCTAGAGTTA+AGG | 0.381657 | 1_1:+55883475 | None:intergenic |
| AGCTCCATTTGTTATTAGTC+AGG | 0.384574 | 1_1:-55884556 | Msa0030010:intron |
| ATGGGTGGTGGCATGGGAGC+TGG | 0.387371 | 1_1:-55884002 | Msa0030010:CDS |
| TAAAACAGAATCTGGTCGTT+TGG | 0.388807 | 1_1:-55886973 | Msa0030010:CDS |
| CTCCTCTCACTGAGGGCCAT+GGG | 0.393070 | 1_1:+55884041 | None:intergenic |
| AATACCTTGCTCCATCTTGT+TGG | 0.394670 | 1_1:+55887219 | None:intergenic |
| GAAGAGATGAAAGTAATAAA+TGG | 0.394683 | 1_1:-55884095 | Msa0030010:CDS |
| CACAAACATAAGTACAGAAT+GGG | 0.394745 | 1_1:-55883217 | Msa0030010:CDS |
| CTTTGGCTCTAGTCTATTTG+TGG | 0.405028 | 1_1:-55887270 | Msa0030010:five_prime_UTR |
| ACTCCTCTCACTGAGGGCCA+TGG | 0.405385 | 1_1:+55884040 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 1_1:-55883037 | Msa0030010:CDS |
| TATACCAATTTACAAGTCTC+AGG | 0.414618 | 1_1:+55882236 | None:intergenic |
| GTGTTGGCAGCTAGGCAAAT+AGG | 0.418858 | 1_1:-55884768 | Msa0030010:intron |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 1_1:-55883030 | Msa0030010:intron |
| CCAGGTTCCATTGCTGGGCT+AGG | 0.437394 | 1_1:+55882534 | None:intergenic |
| ATGTTCATGGGTGGTGGCAT+GGG | 0.437437 | 1_1:-55884008 | Msa0030010:CDS |
| TGAATATCTTGGCAATGAAA+AGG | 0.438416 | 1_1:-55884658 | Msa0030010:CDS |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 1_1:-55883115 | Msa0030010:CDS |
| AATGTTCATGGGTGGTGGCA+TGG | 0.442939 | 1_1:-55884009 | Msa0030010:CDS |
| CAAGTGTTCAGAAAGAGTTA+AGG | 0.445444 | 1_1:-55882473 | Msa0030010:CDS |
| ATGGTGACCCCTAGAGTTAA+GGG | 0.446844 | 1_1:+55883476 | None:intergenic |
| GGTTCTGGCAGCAGCCATAT+TGG | 0.447845 | 1_1:+55882408 | None:intergenic |
| TATATAAAGCCCTTAACTCT+AGG | 0.453952 | 1_1:-55883485 | Msa0030010:CDS |
| GAAGCTGAAAGAAATTCTAT+TGG | 0.458873 | 1_1:-55884406 | Msa0030010:CDS |
| CGCGGCAATCAAACCGGCAA+AGG | 0.461673 | 1_1:+55887067 | None:intergenic |
| TTCCATCTGTGAACTTTACA+AGG | 0.465735 | 1_1:-55882559 | Msa0030010:CDS |
| TGAACCTGACTAATAACAAA+TGG | 0.468847 | 1_1:+55884552 | None:intergenic |
| GTAAATTGGTATAAATGAAA+AGG | 0.471849 | 1_1:-55882226 | Msa0030010:three_prime_UTR |
| TTACTAAGATAAGAAAGAAA+AGG | 0.473764 | 1_1:-55882317 | Msa0030010:three_prime_UTR |
| CCACCCATGAACATTAGAAC+TGG | 0.479997 | 1_1:+55884017 | None:intergenic |
| ATATAAAGCCCTTAACTCTA+GGG | 0.487320 | 1_1:-55883484 | Msa0030010:CDS |
| GCAATAGTCTGCTCGACAAA+AGG | 0.487335 | 1_1:+55883256 | None:intergenic |
| AAGTGTTCAGAAAGAGTTAA+GGG | 0.487553 | 1_1:-55882472 | Msa0030010:CDS |
| GACAAAAGGTTCCCATGATA+AGG | 0.487948 | 1_1:+55883270 | None:intergenic |
| GAGTCCAGTTCTAATGTTCA+TGG | 0.488035 | 1_1:-55884021 | Msa0030010:CDS |
| CAAGTCTCAGGATGGTGTGA+TGG | 0.488644 | 1_1:+55882248 | None:intergenic |
| TCATGGACGGTACCTTATCA+TGG | 0.491092 | 1_1:-55883282 | Msa0030010:CDS |
| GACAAGAGTGTTCTCTACTT+TGG | 0.492501 | 1_1:-55884120 | Msa0030010:CDS |
| CCACCGTCGACTCTTGCTTC+CGG | 0.496739 | 1_1:+55887027 | None:intergenic |
| AACAGGAGAGCTATTATGAC+AGG | 0.506463 | 1_1:-55882911 | Msa0030010:intron |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 1_1:-55882820 | Msa0030010:CDS |
| GGCAATCAAACCGGCAAAGG+AGG | 0.512110 | 1_1:+55887070 | None:intergenic |
| AAGACAGTAACACTTGGTTC+TGG | 0.512285 | 1_1:+55882393 | None:intergenic |
| GTTCTAATGTTCATGGGTGG+TGG | 0.513078 | 1_1:-55884014 | Msa0030010:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 1_1:-55883058 | Msa0030010:CDS |
| TCACAAACATAAGTACAGAA+TGG | 0.515042 | 1_1:-55883218 | Msa0030010:CDS |
| CCTTATAGAATTGAGCTAGT+TGG | 0.515063 | 1_1:-55883073 | Msa0030010:CDS |
| ACTTACATATATTAAATAAG+TGG | 0.515405 | 1_1:+55887405 | None:intergenic |
| CCTAGCCCAGCAATGGAACC+TGG | 0.516557 | 1_1:-55882534 | Msa0030010:CDS |
| GGAACCTGGTTCTGTTTGGA+AGG | 0.517649 | 1_1:-55882520 | Msa0030010:CDS |
| TCCTCTCACTGAGGGCCATG+GGG | 0.524414 | 1_1:+55884042 | None:intergenic |
| TAGAGATGATGCAGCATCAG+TGG | 0.527175 | 1_1:+55883339 | None:intergenic |
| AGGAGCAGCTTCAAAGGCTG+TGG | 0.528800 | 1_1:-55883544 | Msa0030010:CDS |
| TTCAAAGGCTGTGGTTGTTG+AGG | 0.529864 | 1_1:-55883535 | Msa0030010:CDS |
| ACACAAAACAGCTTATTGGA+TGG | 0.530711 | 1_1:-55882665 | Msa0030010:intron |
| CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 1_1:-55882797 | Msa0030010:CDS |
| TTCCTTGTAAAGTTCACAGA+TGG | 0.536025 | 1_1:+55882557 | None:intergenic |
| TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 1_1:-55882794 | Msa0030010:CDS |
| TTGGTTAGGAGCAGCTTCAA+AGG | 0.537556 | 1_1:-55883550 | Msa0030010:CDS |
| TGTCGAGCAGACTATTGCTA+TGG | 0.539450 | 1_1:-55883251 | Msa0030010:CDS |
| AAGTCTCAGGATGGTGTGAT+GGG | 0.544656 | 1_1:+55882249 | None:intergenic |
| GTAACGCGAGGCAGCAGCCG+CGG | 0.551342 | 1_1:+55887049 | None:intergenic |
| CAGAACCAGGTTCCATTGCT+GGG | 0.554057 | 1_1:+55882529 | None:intergenic |
| AAATTCTATTGGCAGCTACA+AGG | 0.556844 | 1_1:-55884395 | Msa0030010:intron |
| TAGAATTGAGCTAGTTGGTG+TGG | 0.559029 | 1_1:-55883068 | Msa0030010:CDS |
| CCACTTGATTTGAGTGCTAG+AGG | 0.560233 | 1_1:-55887324 | Msa0030010:five_prime_UTR |
| CAAAGGGCGAGATGTTATCA+TGG | 0.565583 | 1_1:-55883299 | Msa0030010:CDS |
| TCCCCATGGCCCTCAGTGAG+AGG | 0.570944 | 1_1:-55884043 | Msa0030010:CDS |
| AATCTCAATCTCCAACAAGA+TGG | 0.572542 | 1_1:-55887230 | Msa0030010:exon |
| TTCACAAACTAAAGAAGTCA+TGG | 0.573532 | 1_1:-55884066 | Msa0030010:CDS |
| AGTGCTAGAGGTAACAATCA+AGG | 0.575528 | 1_1:-55887312 | Msa0030010:five_prime_UTR |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 1_1:-55882783 | Msa0030010:intron |
| AAATCCTTCCAAACAGAACC+AGG | 0.577494 | 1_1:+55882516 | None:intergenic |
| TATGACAGGAAGGGCAGTGA+GGG | 0.577678 | 1_1:-55882897 | Msa0030010:CDS |
| GGAGAGCTATTATGACAGGA+AGG | 0.580051 | 1_1:-55882907 | Msa0030010:CDS |
| GAAAAGTTCTCCCACTATGT+TGG | 0.580569 | 1_1:-55886942 | Msa0030010:intron |
| AGAAGAAGAACATCAACAAG+AGG | 0.581089 | 1_1:-55883128 | Msa0030010:CDS |
| CAAGGAACCTAGCCCAGCAA+TGG | 0.583071 | 1_1:-55882541 | Msa0030010:CDS |
| GCATTACATACCAACATAGT+GGG | 0.583296 | 1_1:+55886932 | None:intergenic |
| TACAATTAATGAAAATTACT+GGG | 0.585080 | 1_1:-55883167 | Msa0030010:CDS |
| AACTGGACTCCTCTCACTGA+GGG | 0.586342 | 1_1:+55884034 | None:intergenic |
| CAGCTTATTGGATGGAAGGA+GGG | 0.587320 | 1_1:-55882657 | Msa0030010:CDS |
| AAAACAGCTTATTGGATGGA+AGG | 0.588568 | 1_1:-55882661 | Msa0030010:intron |
| CAGAACATGTGTGAGGCGGA+CGG | 0.590928 | 1_1:+55887097 | None:intergenic |
| ATCTCCAACAAGATGGAGCA+AGG | 0.592137 | 1_1:-55887223 | Msa0030010:intron |
| TAGTGGCGGCTCTAAACAAA+GGG | 0.593741 | 1_1:-55883315 | Msa0030010:CDS |
| CTTCATAAGACAGTAACACT+TGG | 0.596432 | 1_1:+55882387 | None:intergenic |
| CATGGACGGTACCTTATCAT+GGG | 0.596728 | 1_1:-55883281 | Msa0030010:CDS |
| TGCATCATCTCTACTAGTGG+CGG | 0.597453 | 1_1:-55883329 | Msa0030010:CDS |
| TAAAGAAGTCATGGTCCCCA+TGG | 0.598959 | 1_1:-55884057 | Msa0030010:CDS |
| TGCTGCATCATCTCTACTAG+TGG | 0.599865 | 1_1:-55883332 | Msa0030010:CDS |
| AGTCCAGTTCTAATGTTCAT+GGG | 0.602486 | 1_1:-55884020 | Msa0030010:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 1_1:-55883114 | Msa0030010:CDS |
| GAGATGAAAGTAATAAATGG+TGG | 0.609786 | 1_1:-55884092 | Msa0030010:CDS |
| CCTCTAGCACTCAAATCAAG+TGG | 0.612479 | 1_1:+55887324 | None:intergenic |
| AATCTACTAGAGGATCCTGT+TGG | 0.613839 | 1_1:-55882627 | Msa0030010:CDS |
| CAGTTTGAAGCATGTCAGCA+TGG | 0.615090 | 1_1:+55883457 | None:intergenic |
| AGCATTACATACCAACATAG+TGG | 0.615576 | 1_1:+55886931 | None:intergenic |
| ACAGCTTATTGGATGGAAGG+AGG | 0.616233 | 1_1:-55882658 | Msa0030010:intron |
| GGATATAAAGTAGCTGAGGA+TGG | 0.616295 | 1_1:-55883190 | Msa0030010:CDS |
| GGTAGGATATAAAGTAGCTG+AGG | 0.616503 | 1_1:-55883194 | Msa0030010:CDS |
| TGGGCAAGTATGCATAACTC+TGG | 0.617131 | 1_1:+55884723 | None:intergenic |
| GGGCGAGATGTTATCATGGA+CGG | 0.617614 | 1_1:-55883295 | Msa0030010:CDS |
| GAGAGCTATTATGACAGGAA+GGG | 0.618202 | 1_1:-55882906 | Msa0030010:CDS |
| CTCTTGCTTCCGGTAACGCG+AGG | 0.623457 | 1_1:+55887037 | None:intergenic |
| TGTTCACATACAGGAAACAA+AGG | 0.629269 | 1_1:-55884172 | Msa0030010:intron |
| CTAGTGGCGGCTCTAAACAA+AGG | 0.630500 | 1_1:-55883316 | Msa0030010:CDS |
| AGGATTTGAAGATGCAAGTG+AGG | 0.631153 | 1_1:-55884748 | Msa0030010:CDS |
| GAGAGTAACCAAGAATCTGA+AGG | 0.632638 | 1_1:-55884144 | Msa0030010:CDS |
| CTTTGCCGGTTTGATTGCCG+CGG | 0.633840 | 1_1:-55887066 | Msa0030010:CDS |
| CCAATTTACAAGTCTCAGGA+TGG | 0.634688 | 1_1:+55882240 | None:intergenic |
| CCAGTTCTAATGTTCATGGG+TGG | 0.641784 | 1_1:-55884017 | Msa0030010:CDS |
| TATAAAGCCCTTAACTCTAG+GGG | 0.644037 | 1_1:-55883483 | Msa0030010:CDS |
| CAGCCAGAACATGTGTGAGG+CGG | 0.646050 | 1_1:+55887093 | None:intergenic |
| GGGTGATCACAATCTACTAG+AGG | 0.647681 | 1_1:-55882637 | Msa0030010:CDS |
| AATGAAATGCAAAATAACTG+AGG | 0.656048 | 1_1:+55884586 | None:intergenic |
| TTACCGGAAGCAAGAGTCGA+CGG | 0.658682 | 1_1:-55887030 | Msa0030010:CDS |
| ACAAACATAAGTACAGAATG+GGG | 0.664528 | 1_1:-55883216 | Msa0030010:CDS |
| AGGCAGCCAGAACATGTGTG+AGG | 0.672431 | 1_1:+55887090 | None:intergenic |
| GAACTGGACTCCTCTCACTG+AGG | 0.673724 | 1_1:+55884033 | None:intergenic |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 1_1:-55883113 | Msa0030010:CDS |
| TTATGACAGGAAGGGCAGTG+AGG | 0.719044 | 1_1:-55882898 | Msa0030010:CDS |
| CAAACATAAGTACAGAATGG+GGG | 0.724586 | 1_1:-55883215 | Msa0030010:CDS |
| CCGGAAGCAAGAGTCGACGG+TGG | 0.756030 | 1_1:-55887027 | Msa0030010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTATTTTTA+TGG | - | chr1_1:55887297-55887316 | Msa0030010:five_prime_UTR | 0.0% |
| !!! | TTTTATTTTTTTATTTTTAT+GGG | - | chr1_1:55887298-55887317 | Msa0030010:five_prime_UTR | 0.0% |
| !! | TAATCTATAAATATTTATGT+CGG | - | chr1_1:55883197-55883216 | Msa0030010:CDS | 10.0% |
| !!! | TTTTAATTAACAATTTATGT+GGG | + | chr1_1:55883273-55883292 | None:intergenic | 10.0% |
| !! | AAAATTAAATGATTTGAATT+GGG | + | chr1_1:55884010-55884029 | None:intergenic | 10.0% |
| !! | AAAAATTAAATGATTTGAAT+TGG | + | chr1_1:55884011-55884030 | None:intergenic | 10.0% |
| !!! | CAAATCATTTAATTTTTTTT+TGG | - | chr1_1:55884014-55884033 | Msa0030010:CDS | 10.0% |
| !! | ATTCAAAACAATTTATTATT+AGG | + | chr1_1:55884171-55884190 | None:intergenic | 10.0% |
| !! | ACTTACATATATTAAATAAG+TGG | + | chr1_1:55882188-55882207 | None:intergenic | 15.0% |
| !! | AAAAGAAAATTCTCATATTA+TGG | - | chr1_1:55883018-55883037 | Msa0030010:intron | 15.0% |
| !! | AAAGAAAATTCTCATATTAT+GGG | - | chr1_1:55883019-55883038 | Msa0030010:intron | 15.0% |
| !! | ATCAAAAAATTGTAACAAAA+TGG | - | chr1_1:55883134-55883153 | Msa0030010:CDS | 15.0% |
| !!! | CTTTTAATTAACAATTTATG+TGG | + | chr1_1:55883274-55883293 | None:intergenic | 15.0% |
| !! | TACCCAAATAAATATTATTT+AGG | - | chr1_1:55883508-55883527 | Msa0030010:CDS | 15.0% |
| !! | TGCCTAAATAATATTTATTT+GGG | + | chr1_1:55883513-55883532 | None:intergenic | 15.0% |
| !!! | ACATTAACTATTTTCATATA+AGG | - | chr1_1:55883795-55883814 | Msa0030010:intron | 15.0% |
| !! | ACATTAAGTAAGTATATTAA+CGG | - | chr1_1:55883847-55883866 | Msa0030010:intron | 15.0% |
| !! | AAATTAAATGATTTGAATTG+GGG | + | chr1_1:55884009-55884028 | None:intergenic | 15.0% |
| !!! | TCAAAACAACTTTTTTTTTT+AGG | + | chr1_1:55884195-55884214 | None:intergenic | 15.0% |
| !! | AACTTTAGTCTATAAAAATT+AGG | - | chr1_1:55884290-55884309 | Msa0030010:intron | 15.0% |
| !! | AACATTAATATTTCATTGAA+GGG | + | chr1_1:55884717-55884736 | None:intergenic | 15.0% |
| !!! | CAAAATTCAGAATTTTAATT+TGG | - | chr1_1:55884784-55884803 | Msa0030010:intron | 15.0% |
| !!! | TATAATGATGTAACATTTTA+AGG | + | chr1_1:55885313-55885332 | None:intergenic | 15.0% |
| !! | TTATGCCTAAATAAATATTA+TGG | - | chr1_1:55886002-55886021 | Msa0030010:intron | 15.0% |
| !! | TACAATTAATGAAAATTACT+GGG | - | chr1_1:55886423-55886442 | Msa0030010:intron | 15.0% |
| !! | ACTTTATTAATATACTTTAG+TGG | - | chr1_1:55886606-55886625 | Msa0030010:intron | 15.0% |
| !!! | TTTTTTATTTTTATGGGTTT+TGG | - | chr1_1:55887304-55887323 | Msa0030010:five_prime_UTR | 15.0% |
| !! | ATATGTAAGTAGATGAAATA+TGG | - | chr1_1:55882198-55882217 | Msa0030010:three_prime_UTR | 20.0% |
| !! | AAAGAAAAAAAAGTAGTGTA+AGG | - | chr1_1:55882862-55882881 | Msa0030010:CDS | 20.0% |
| !! | AAATCACTGCTATAATATAA+AGG | - | chr1_1:55882970-55882989 | Msa0030010:intron | 20.0% |
| !!! | TTCTTTTGAAGGATAATTTT+AGG | + | chr1_1:55883005-55883024 | None:intergenic | 20.0% |
| !!! | ATATGAGAATTTTCTTTTGA+AGG | + | chr1_1:55883016-55883035 | None:intergenic | 20.0% |
| !! | AAGAAAATTCTCATATTATG+GGG | - | chr1_1:55883020-55883039 | Msa0030010:intron | 20.0% |
| !! | AAAGAAAGATAATTCAAAAC+AGG | - | chr1_1:55883445-55883464 | Msa0030010:intron | 20.0% |
| !! | AAGAAAGATAATTCAAAACA+GGG | - | chr1_1:55883446-55883465 | Msa0030010:intron | 20.0% |
| !! | GTGCCTAAATAATATTTATT+TGG | + | chr1_1:55883514-55883533 | None:intergenic | 20.0% |
| !! | TACCTAAATCAACATTATTT+GGG | + | chr1_1:55883622-55883641 | None:intergenic | 20.0% |
| !! | ATACCTAAATCAACATTATT+TGG | + | chr1_1:55883623-55883642 | None:intergenic | 20.0% |
| !! | CATTAAGTAAGTATATTAAC+GGG | - | chr1_1:55883848-55883867 | Msa0030010:intron | 20.0% |
| !! | TGAATTAACTAAATGCAAAT+TGG | - | chr1_1:55884051-55884070 | Msa0030010:CDS | 20.0% |
| !!! | TTAAGCTTTGAATATTTGAT+AGG | + | chr1_1:55884248-55884267 | None:intergenic | 20.0% |
| !! | TAACTTAATTAAGACTATCT+TGG | + | chr1_1:55884381-55884400 | None:intergenic | 20.0% |
| !! | TGTTTACAAATTTACTCTAA+AGG | + | chr1_1:55884463-55884482 | None:intergenic | 20.0% |
| !! | ACGAATGTAATAAAAAATAG+CGG | - | chr1_1:55884564-55884583 | Msa0030010:CDS | 20.0% |
| !! | TAAGAACAAAAATATCAACA+AGG | + | chr1_1:55884655-55884674 | None:intergenic | 20.0% |
| !! | CAACATTAATATTTCATTGA+AGG | + | chr1_1:55884718-55884737 | None:intergenic | 20.0% |
| !! | CAAAGCCATAATATTTATTT+AGG | + | chr1_1:55886010-55886029 | None:intergenic | 20.0% |
| !! | CTAAATAAATATTATGGCTT+TGG | - | chr1_1:55886008-55886027 | Msa0030010:intron | 20.0% |
| !! | GTACAATTAATGAAAATTAC+TGG | - | chr1_1:55886422-55886441 | Msa0030010:intron | 20.0% |
| !!! | TATAGTTAACATTTTCCTTT+TGG | - | chr1_1:55886650-55886669 | Msa0030010:intron | 20.0% |
| !! | TTACTAAGATAAGAAAGAAA+AGG | - | chr1_1:55887273-55887292 | Msa0030010:five_prime_UTR | 20.0% |
| !! | GTAAATTGGTATAAATGAAA+AGG | - | chr1_1:55887364-55887383 | Msa0030010:five_prime_UTR | 20.0% |
| !!! | AGTTCATAATGTTTTTCAGA+TGG | - | chr1_1:55882459-55882478 | Msa0030010:CDS | 25.0% |
| !!! | TAATGTTTTTCAGATGGTAT+TGG | - | chr1_1:55882465-55882484 | Msa0030010:CDS | 25.0% |
| !!! | ATGTAATGCTTCACTTTTTT+TGG | - | chr1_1:55882672-55882691 | Msa0030010:intron | 25.0% |
| !!! | TGTAATGCTTCACTTTTTTT+GGG | - | chr1_1:55882673-55882692 | Msa0030010:intron | 25.0% |
| ! | ACAAGAAAACAGAACTATAA+AGG | - | chr1_1:55882895-55882914 | Msa0030010:CDS | 25.0% |
| ! | TTTGTTAGTATGAGAAAGAA+AGG | - | chr1_1:55883076-55883095 | Msa0030010:CDS | 25.0% |
| !! | TTCATTTCTCTTTTGTTAGT+TGG | - | chr1_1:55883174-55883193 | Msa0030010:CDS | 25.0% |
| !!! | ATATTTATGTCGGTGTTTTT+TGG | - | chr1_1:55883207-55883226 | Msa0030010:CDS | 25.0% |
| ! | AGAAAGATAATTCAAAACAG+GGG | - | chr1_1:55883447-55883466 | Msa0030010:intron | 25.0% |
| ! | AAAATGGAAAATGTCTTTCA+TGG | + | chr1_1:55883650-55883669 | None:intergenic | 25.0% |
| !! | TGAAAGACATTTTCCATTTT+AGG | - | chr1_1:55883650-55883669 | Msa0030010:intron | 25.0% |
| ! | TTCACATTCATAACCTAAAA+TGG | + | chr1_1:55883666-55883685 | None:intergenic | 25.0% |
| ! | ATAGTTAATGTCAATGTTGA+AGG | + | chr1_1:55883786-55883805 | None:intergenic | 25.0% |
| ! | TTGAAATTTCGATACATTGA+AGG | - | chr1_1:55883948-55883967 | Msa0030010:intron | 25.0% |
| ! | GAAGGAATATTATAGATACA+CGG | - | chr1_1:55883966-55883985 | Msa0030010:intron | 25.0% |
| ! | AAGGAATATTATAGATACAC+GGG | - | chr1_1:55883967-55883986 | Msa0030010:intron | 25.0% |
| !! | AACTAAATGCAAATTGGTTT+AGG | - | chr1_1:55884057-55884076 | Msa0030010:CDS | 25.0% |
| !! | TATCTGACGTTAATTTGATT+GGG | + | chr1_1:55884135-55884154 | None:intergenic | 25.0% |
| !! | ATATCTGACGTTAATTTGAT+TGG | + | chr1_1:55884136-55884155 | None:intergenic | 25.0% |
| ! | ATCACAAGAATTAAGAAAGT+TGG | + | chr1_1:55884517-55884536 | None:intergenic | 25.0% |
| ! | CGAATGTAATAAAAAATAGC+GGG | - | chr1_1:55884565-55884584 | Msa0030010:CDS | 25.0% |
| ! | TTAATATTTCATTGAAGGGA+GGG | + | chr1_1:55884713-55884732 | None:intergenic | 25.0% |
| ! | ATTAATATTTCATTGAAGGG+AGG | + | chr1_1:55884714-55884733 | None:intergenic | 25.0% |
| ! | AATGAAATGCAAAATAACTG+AGG | + | chr1_1:55885007-55885026 | None:intergenic | 25.0% |
| !!! | TCAGTTATTTTGCATTTCAT+TGG | - | chr1_1:55885006-55885025 | Msa0030010:intron | 25.0% |
| ! | TTATAGAGTTAGACAATTCA+AGG | - | chr1_1:55885328-55885347 | Msa0030010:intron | 25.0% |
| ! | GAAGAGATGAAAGTAATAAA+TGG | - | chr1_1:55885495-55885514 | Msa0030010:intron | 25.0% |
| ! | GACATTAAATAATCCAACAA+TGG | + | chr1_1:55885770-55885789 | None:intergenic | 25.0% |
| ! | GATTATTTAATGTCTGCATT+TGG | - | chr1_1:55885776-55885795 | Msa0030010:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | - | chr1_1:55885909-55885928 | Msa0030010:intron | 25.0% |
| ! | AAACATTTCAAAATCTGTAC+AGG | - | chr1_1:55886216-55886235 | Msa0030010:intron | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | - | chr1_1:55886662-55886681 | Msa0030010:intron | 25.0% |
| ! | TCAACAAGTTTGCAATATTT+GGG | + | chr1_1:55886763-55886782 | None:intergenic | 25.0% |
| ! | GATTCTGTTTTATCAACTTG+AGG | + | chr1_1:55882609-55882628 | None:intergenic | 30.0% |
| !! | CAAGTTGATAAAACAGAATC+TGG | - | chr1_1:55882609-55882628 | Msa0030010:CDS | 30.0% |
| ACAGTGAGATTGAAAAAGAA+AGG | + | chr1_1:55882728-55882747 | None:intergenic | 30.0% | |
| ACAAAATTCTTGTGCTAATG+CGG | + | chr1_1:55883061-55883080 | None:intergenic | 30.0% | |
| !! | TTTCTAAAATCCAACTTGAC+CGG | + | chr1_1:55883428-55883447 | None:intergenic | 30.0% |
| !! | TGCCCAAATAATGTTGATTT+AGG | - | chr1_1:55883617-55883636 | Msa0030010:intron | 30.0% |
| ! | AAATGCAAATTGGTTTAGGT+AGG | - | chr1_1:55884061-55884080 | Msa0030010:CDS | 30.0% |
| AACAAGGTCATTCTTTACTA+GGG | + | chr1_1:55884639-55884658 | None:intergenic | 30.0% | |
| ! | GGATTTTTGCAGATATTCTT+GGG | + | chr1_1:55884889-55884908 | None:intergenic | 30.0% |
| ! | TGGATTTTTGCAGATATTCT+TGG | + | chr1_1:55884890-55884909 | None:intergenic | 30.0% |
| GAATATCTGCAAAAATCCAA+AGG | - | chr1_1:55884891-55884910 | Msa0030010:intron | 30.0% | |
| ! | CAAAGCATCTTTGAATATCT+TGG | - | chr1_1:55884921-55884940 | Msa0030010:intron | 30.0% |
| TGAATATCTTGGCAATGAAA+AGG | - | chr1_1:55884932-55884951 | Msa0030010:intron | 30.0% | |
| TGAATCTCTCTATGTCAAAT+TGG | - | chr1_1:55884959-55884978 | Msa0030010:intron | 30.0% | |
| TGAACCTGACTAATAACAAA+TGG | + | chr1_1:55885041-55885060 | None:intergenic | 30.0% | |
| ! | AGTTTTCAGTACCTAGAATT+TGG | + | chr1_1:55885147-55885166 | None:intergenic | 30.0% |
| GAAGCTGAAAGAAATTCTAT+TGG | - | chr1_1:55885184-55885203 | Msa0030010:intron | 30.0% | |
| GAGATGAAAGTAATAAATGG+TGG | - | chr1_1:55885498-55885517 | Msa0030010:intron | 30.0% | |
| TTCACAAACTAAAGAAGTCA+TGG | - | chr1_1:55885524-55885543 | Msa0030010:intron | 30.0% | |
| ATAATCCAACAATGGAATTG+AGG | + | chr1_1:55885762-55885781 | None:intergenic | 30.0% | |
| TATATAAAGCCCTTAACTCT+AGG | - | chr1_1:55886105-55886124 | Msa0030010:intron | 30.0% | |
| ATATAAAGCCCTTAACTCTA+GGG | - | chr1_1:55886106-55886125 | Msa0030010:intron | 30.0% | |
| ACCTTCATGAAATGTTACTA+TGG | - | chr1_1:55886179-55886198 | Msa0030010:intron | 30.0% | |
| ACCATAGTAACATTTCATGA+AGG | + | chr1_1:55886183-55886202 | None:intergenic | 30.0% | |
| TCACAAACATAAGTACAGAA+TGG | - | chr1_1:55886372-55886391 | Msa0030010:intron | 30.0% | |
| CACAAACATAAGTACAGAAT+GGG | - | chr1_1:55886373-55886392 | Msa0030010:intron | 30.0% | |
| ACAAACATAAGTACAGAATG+GGG | - | chr1_1:55886374-55886393 | Msa0030010:intron | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | - | chr1_1:55886476-55886495 | Msa0030010:intron | 30.0% | |
| ATTAGGTGTATATATGCTTG+TGG | - | chr1_1:55886577-55886596 | Msa0030010:intron | 30.0% | |
| TCTCCTGTTAAAATTCCAAA+AGG | + | chr1_1:55886668-55886687 | None:intergenic | 30.0% | |
| GTCAACAAGTTTGCAATATT+TGG | + | chr1_1:55886764-55886783 | None:intergenic | 30.0% | |
| TTTCACACAAAACAGCTTAT+TGG | - | chr1_1:55886921-55886940 | Msa0030010:intron | 30.0% | |
| AAAAGCTTGAAAAATGTAGC+AGG | - | chr1_1:55886990-55887009 | Msa0030010:CDS | 30.0% | |
| AAGTGTTCAGAAAGAGTTAA+GGG | - | chr1_1:55887118-55887137 | Msa0030010:intron | 30.0% | |
| !!! | GGACTTCTCTATTTTTTGAA+TGG | + | chr1_1:55887147-55887166 | None:intergenic | 30.0% |
| ! | TATTGGTCACATTTTTCTGA+TGG | + | chr1_1:55887168-55887187 | None:intergenic | 30.0% |
| TCAGAAAAATGTGACCAATA+TGG | - | chr1_1:55887168-55887187 | Msa0030010:intron | 30.0% | |
| !!! | TTTTATGGGTTTTGGACTTT+TGG | - | chr1_1:55887312-55887331 | Msa0030010:five_prime_UTR | 30.0% |
| TATACCAATTTACAAGTCTC+AGG | + | chr1_1:55887357-55887376 | None:intergenic | 30.0% | |
| AATCTCAATCTCCAACAAGA+TGG | - | chr1_1:55882360-55882379 | Msa0030010:three_prime_UTR | 35.0% | |
| TAAAACAGAATCTGGTCGTT+TGG | - | chr1_1:55882617-55882636 | Msa0030010:CDS | 35.0% | |
| GCATTACATACCAACATAGT+GGG | + | chr1_1:55882661-55882680 | None:intergenic | 35.0% | |
| AGCATTACATACCAACATAG+TGG | + | chr1_1:55882662-55882681 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGAGGCTATCATTT+TGG | + | chr1_1:55882817-55882836 | None:intergenic | 35.0% |
| ! | AATACACCACTTGAGTTTTG+AGG | + | chr1_1:55882829-55882848 | None:intergenic | 35.0% |
| AGTGGTGTATTAGTCAAAAG+AGG | - | chr1_1:55882838-55882857 | Msa0030010:CDS | 35.0% | |
| !!! | TTTTGAAACTCGACGAACAA+AGG | + | chr1_1:55883245-55883264 | None:intergenic | 35.0% |
| ATCTGCAAAATCAACTGTGT+TGG | - | chr1_1:55883386-55883405 | Msa0030010:intron | 35.0% | |
| !! | ACAGGGGTAATAGTCATTTT+CGG | - | chr1_1:55883463-55883482 | Msa0030010:CDS | 35.0% |
| GATAGATTGAAAAACGACTC+TGG | + | chr1_1:55883697-55883716 | None:intergenic | 35.0% | |
| TGGTGAATGAGAGAATTCAT+TGG | + | chr1_1:55884361-55884380 | None:intergenic | 35.0% | |
| ! | GTAATAAAAAATAGCGGGAC+AGG | - | chr1_1:55884570-55884589 | Msa0030010:CDS | 35.0% |
| CAACAAGGTCATTCTTTACT+AGG | + | chr1_1:55884640-55884659 | None:intergenic | 35.0% | |
| AATTGTTGCCATATACTAGC+AGG | - | chr1_1:55884676-55884695 | Msa0030010:CDS | 35.0% | |
| AAAGCTTACCTGCTAGTATA+TGG | + | chr1_1:55884687-55884706 | None:intergenic | 35.0% | |
| !! | AGCTCCATTTGTTATTAGTC+AGG | - | chr1_1:55885034-55885053 | Msa0030010:intron | 35.0% |
| ACGTACTCAATACTTAACTG+AGG | + | chr1_1:55885114-55885133 | None:intergenic | 35.0% | |
| GTATTGAGTACGTCTTTCTT+CGG | - | chr1_1:55885121-55885140 | Msa0030010:intron | 35.0% | |
| AAATTCTATTGGCAGCTACA+AGG | - | chr1_1:55885195-55885214 | Msa0030010:intron | 35.0% | |
| TGCTGTATATGTTCACATAC+AGG | - | chr1_1:55885409-55885428 | Msa0030010:intron | 35.0% | |
| TGTTCACATACAGGAAACAA+AGG | - | chr1_1:55885418-55885437 | Msa0030010:intron | 35.0% | |
| ! | AGTCCAGTTCTAATGTTCAT+GGG | - | chr1_1:55885570-55885589 | Msa0030010:intron | 35.0% |
| TTTGGATCAATCCAACTATG+AGG | - | chr1_1:55885794-55885813 | Msa0030010:intron | 35.0% | |
| !!! | TTTGGCAGATCATTTTGGTT+AGG | - | chr1_1:55886026-55886045 | Msa0030010:intron | 35.0% |
| TATAAAGCCCTTAACTCTAG+GGG | - | chr1_1:55886107-55886126 | Msa0030010:intron | 35.0% | |
| CAAACATAAGTACAGAATGG+GGG | - | chr1_1:55886375-55886394 | Msa0030010:intron | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | - | chr1_1:55886462-55886481 | Msa0030010:intron | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | - | chr1_1:55886475-55886494 | Msa0030010:intron | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | - | chr1_1:55886477-55886496 | Msa0030010:intron | 35.0% | |
| CCAACTAGCTCAATTCTATA+AGG | + | chr1_1:55886520-55886539 | None:intergenic | 35.0% | |
| CCTTATAGAATTGAGCTAGT+TGG | - | chr1_1:55886517-55886536 | Msa0030010:intron | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | - | chr1_1:55886553-55886572 | Msa0030010:intron | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | - | chr1_1:55886560-55886579 | Msa0030010:intron | 35.0% |
| !!! | GTTGATCCTGTTTTTACCTT+TGG | + | chr1_1:55886826-55886845 | None:intergenic | 35.0% |
| TGTAAAATCAATCACAGTCG+AGG | + | chr1_1:55886852-55886871 | None:intergenic | 35.0% | |
| ACACAAAACAGCTTATTGGA+TGG | - | chr1_1:55886925-55886944 | Msa0030010:intron | 35.0% | |
| AAAACAGCTTATTGGATGGA+AGG | - | chr1_1:55886929-55886948 | Msa0030010:intron | 35.0% | |
| ! | TTCAAGCTTTTGATACCAAC+AGG | + | chr1_1:55886981-55887000 | None:intergenic | 35.0% |
| TTCCATCTGTGAACTTTACA+AGG | - | chr1_1:55887031-55887050 | Msa0030010:CDS | 35.0% | |
| TTCCTTGTAAAGTTCACAGA+TGG | + | chr1_1:55887036-55887055 | None:intergenic | 35.0% | |
| ! | ATTTTGTTCTGTCACCTTCA+AGG | - | chr1_1:55887093-55887112 | Msa0030010:CDS | 35.0% |
| CAAGTGTTCAGAAAGAGTTA+AGG | - | chr1_1:55887117-55887136 | Msa0030010:intron | 35.0% | |
| CTTCATAAGACAGTAACACT+TGG | + | chr1_1:55887206-55887225 | None:intergenic | 35.0% | |
| AGTGCTAGAGGTAACAATCA+AGG | - | chr1_1:55882278-55882297 | Msa0030010:three_prime_UTR | 40.0% | |
| !! | CTTTGGCTCTAGTCTATTTG+TGG | - | chr1_1:55882320-55882339 | Msa0030010:three_prime_UTR | 40.0% |
| AATACCTTGCTCCATCTTGT+TGG | + | chr1_1:55882374-55882393 | None:intergenic | 40.0% | |
| GAAAAGTTCTCCCACTATGT+TGG | - | chr1_1:55882648-55882667 | Msa0030010:CDS | 40.0% | |
| TGATAGCCTCAAAACTCAAG+TGG | - | chr1_1:55882820-55882839 | Msa0030010:CDS | 40.0% | |
| ! | AAATCAACTGTGTTGGTCCT+AGG | - | chr1_1:55883393-55883412 | Msa0030010:intron | 40.0% |
| ! | AATCAACTGTGTTGGTCCTA+GGG | - | chr1_1:55883394-55883413 | Msa0030010:intron | 40.0% |
| !! | CAGGGGTAATAGTCATTTTC+GGG | - | chr1_1:55883464-55883483 | Msa0030010:CDS | 40.0% |
| AACGTCAGATATCACATCAC+TGG | - | chr1_1:55884144-55884163 | Msa0030010:CDS | 40.0% | |
| AGGTCATTCTTTACTAGGGA+TGG | + | chr1_1:55884635-55884654 | None:intergenic | 40.0% | |
| AGGATTTGAAGATGCAAGTG+AGG | - | chr1_1:55884842-55884861 | Msa0030010:intron | 40.0% | |
| GATGCTTTGATCACATCCTT+TGG | + | chr1_1:55884910-55884929 | None:intergenic | 40.0% | |
| TCTTTCTTCGGCCAAATTCT+AGG | - | chr1_1:55885133-55885152 | Msa0030010:intron | 40.0% | |
| GAGAGTAACCAAGAATCTGA+AGG | - | chr1_1:55885446-55885465 | Msa0030010:intron | 40.0% | |
| TCTTGTCACCTTCAGATTCT+TGG | + | chr1_1:55885457-55885476 | None:intergenic | 40.0% | |
| !! | GACAAGAGTGTTCTCTACTT+TGG | - | chr1_1:55885470-55885489 | Msa0030010:intron | 40.0% |
| ! | GAGTCCAGTTCTAATGTTCA+TGG | - | chr1_1:55885569-55885588 | Msa0030010:intron | 40.0% |
| AAACCTGCGAGAGTAGAATT+AGG | + | chr1_1:55885662-55885681 | None:intergenic | 40.0% | |
| ATCAATCCAACTATGAGGTG+CGG | - | chr1_1:55885799-55885818 | Msa0030010:intron | 40.0% | |
| TCATGTGTATGACACACGTT+TGG | + | chr1_1:55885845-55885864 | None:intergenic | 40.0% | |
| TTTGCAAGACTCATGCATAC+AGG | + | chr1_1:55885873-55885892 | None:intergenic | 40.0% | |
| ACAAAGTAAGCAGGCATGTA+TGG | + | chr1_1:55885966-55885985 | None:intergenic | 40.0% | |
| GCTCTTACTACAAAGTAAGC+AGG | + | chr1_1:55885975-55885994 | None:intergenic | 40.0% | |
| !!! | ATGGCTTTGGCAGATCATTT+TGG | - | chr1_1:55886021-55886040 | Msa0030010:intron | 40.0% |
| ! | TGTTGAGGCAGATGCTTTTA+AGG | - | chr1_1:55886070-55886089 | Msa0030010:intron | 40.0% |
| CATGCTTCAAACTGCTGAAT+TGG | - | chr1_1:55886142-55886161 | Msa0030010:intron | 40.0% | |
| GACAAAAGGTTCCCATGATA+AGG | + | chr1_1:55886323-55886342 | None:intergenic | 40.0% | |
| GGTAGGATATAAAGTAGCTG+AGG | - | chr1_1:55886396-55886415 | Msa0030010:intron | 40.0% | |
| GGATATAAAGTAGCTGAGGA+TGG | - | chr1_1:55886400-55886419 | Msa0030010:intron | 40.0% | |
| TCTTCTTCTGCTTCATTCAC+TGG | + | chr1_1:55886451-55886470 | None:intergenic | 40.0% | |
| ! | TAGAATTGAGCTAGTTGGTG+TGG | - | chr1_1:55886522-55886541 | Msa0030010:intron | 40.0% |
| AACAGGAGAGCTATTATGAC+AGG | - | chr1_1:55886679-55886698 | Msa0030010:intron | 40.0% | |
| GAGAGCTATTATGACAGGAA+GGG | - | chr1_1:55886684-55886703 | Msa0030010:intron | 40.0% | |
| !!! | GATCCTGTTTTTACCTTTGG+TGG | + | chr1_1:55886823-55886842 | None:intergenic | 40.0% |
| AATCTACTAGAGGATCCTGT+TGG | - | chr1_1:55886963-55886982 | Msa0030010:CDS | 40.0% | |
| AAATCCTTCCAAACAGAACC+AGG | + | chr1_1:55887077-55887096 | None:intergenic | 40.0% | |
| TTCTGAACACTTGACCTTGA+AGG | + | chr1_1:55887110-55887129 | None:intergenic | 40.0% | |
| AAGACAGTAACACTTGGTTC+TGG | + | chr1_1:55887200-55887219 | None:intergenic | 40.0% | |
| CCAATTTACAAGTCTCAGGA+TGG | + | chr1_1:55887353-55887372 | None:intergenic | 40.0% | |
| CCATCCTGAGACTTGTAAAT+TGG | - | chr1_1:55887350-55887369 | Msa0030010:five_prime_UTR | 40.0% | |
| CCTCTAGCACTCAAATCAAG+TGG | + | chr1_1:55882269-55882288 | None:intergenic | 45.0% | |
| ! | CCACTTGATTTGAGTGCTAG+AGG | - | chr1_1:55882266-55882285 | Msa0030010:three_prime_UTR | 45.0% |
| GTCAGCTACAGCTTCTTCTT+TGG | - | chr1_1:55882303-55882322 | Msa0030010:three_prime_UTR | 45.0% | |
| ATCTCCAACAAGATGGAGCA+AGG | - | chr1_1:55882367-55882386 | Msa0030010:three_prime_UTR | 45.0% | |
| TTTCGGGAGAAAGTCTTGCA+TGG | - | chr1_1:55883480-55883499 | Msa0030010:CDS | 45.0% | |
| TTCGGGAGAAAGTCTTGCAT+GGG | - | chr1_1:55883481-55883500 | Msa0030010:CDS | 45.0% | |
| ! | AAAAATAGCGGGACAGGTAG+CGG | - | chr1_1:55884576-55884595 | Msa0030010:CDS | 45.0% |
| TGGGCAAGTATGCATAACTC+TGG | + | chr1_1:55884870-55884889 | None:intergenic | 45.0% | |
| ATTGGCAGCTACAAGGTAAC+TGG | - | chr1_1:55885202-55885221 | Msa0030010:intron | 45.0% | |
| TAAAGAAGTCATGGTCCCCA+TGG | - | chr1_1:55885533-55885552 | Msa0030010:intron | 45.0% | |
| CCACCCATGAACATTAGAAC+TGG | + | chr1_1:55885576-55885595 | None:intergenic | 45.0% | |
| ! | CCAGTTCTAATGTTCATGGG+TGG | - | chr1_1:55885573-55885592 | Msa0030010:intron | 45.0% |
| GTTCTAATGTTCATGGGTGG+TGG | - | chr1_1:55885576-55885595 | Msa0030010:intron | 45.0% | |
| CTGCGAGAGTAGAATTAGGA+TGG | + | chr1_1:55885658-55885677 | None:intergenic | 45.0% | |
| CATCCTAATTCTACTCTCGC+AGG | - | chr1_1:55885656-55885675 | Msa0030010:intron | 45.0% | |
| ACGCACCTCAATTCCATTGT+TGG | - | chr1_1:55885754-55885773 | Msa0030010:intron | 45.0% | |
| CAAGACTCATGCATACAGGA+TGG | + | chr1_1:55885869-55885888 | None:intergenic | 45.0% | |
| TTGGTTAGGAGCAGCTTCAA+AGG | - | chr1_1:55886040-55886059 | Msa0030010:intron | 45.0% | |
| TTCAAAGGCTGTGGTTGTTG+AGG | - | chr1_1:55886055-55886074 | Msa0030010:intron | 45.0% | |
| ATGGTGACCCCTAGAGTTAA+GGG | + | chr1_1:55886117-55886136 | None:intergenic | 45.0% | |
| ! | CAGTTTGAAGCATGTCAGCA+TGG | + | chr1_1:55886136-55886155 | None:intergenic | 45.0% |
| TAGAGATGATGCAGCATCAG+TGG | + | chr1_1:55886254-55886273 | None:intergenic | 45.0% | |
| TGCTGCATCATCTCTACTAG+TGG | - | chr1_1:55886258-55886277 | Msa0030010:intron | 45.0% | |
| TGCATCATCTCTACTAGTGG+CGG | - | chr1_1:55886261-55886280 | Msa0030010:intron | 45.0% | |
| !! | TAGTGGCGGCTCTAAACAAA+GGG | - | chr1_1:55886275-55886294 | Msa0030010:intron | 45.0% |
| CAAAGGGCGAGATGTTATCA+TGG | - | chr1_1:55886291-55886310 | Msa0030010:intron | 45.0% | |
| TCATGGACGGTACCTTATCA+TGG | - | chr1_1:55886308-55886327 | Msa0030010:intron | 45.0% | |
| CATGGACGGTACCTTATCAT+GGG | - | chr1_1:55886309-55886328 | Msa0030010:intron | 45.0% | |
| GCAATAGTCTGCTCGACAAA+AGG | + | chr1_1:55886337-55886356 | None:intergenic | 45.0% | |
| TGTCGAGCAGACTATTGCTA+TGG | - | chr1_1:55886339-55886358 | Msa0030010:intron | 45.0% | |
| CATAAGTACAGAATGGGGGT+AGG | - | chr1_1:55886379-55886398 | Msa0030010:intron | 45.0% | |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | - | chr1_1:55886532-55886551 | Msa0030010:intron | 45.0% |
| GGAGAGCTATTATGACAGGA+AGG | - | chr1_1:55886683-55886702 | Msa0030010:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | - | chr1_1:55886770-55886789 | Msa0030010:intron | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | - | chr1_1:55886793-55886812 | Msa0030010:intron | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | - | chr1_1:55886796-55886815 | Msa0030010:intron | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+AGG | - | chr1_1:55886817-55886836 | Msa0030010:intron | 45.0% | |
| ACAGCTTATTGGATGGAAGG+AGG | - | chr1_1:55886932-55886951 | Msa0030010:intron | 45.0% | |
| CAGCTTATTGGATGGAAGGA+GGG | - | chr1_1:55886933-55886952 | Msa0030010:intron | 45.0% | |
| GGGTGATCACAATCTACTAG+AGG | - | chr1_1:55886953-55886972 | Msa0030010:CDS | 45.0% | |
| !! | CAATGGAACCTGGTTCTGTT+TGG | - | chr1_1:55887066-55887085 | Msa0030010:CDS | 45.0% |
| AAGTCTCAGGATGGTGTGAT+GGG | + | chr1_1:55887344-55887363 | None:intergenic | 45.0% | |
| !!! | ATATTAACAAAATATTTTAA+CGG | - | chr1_1:55883882-55883901 | Msa0030010:intron | 5.0% |
| !!! | AAATCATTTAATTTTTTTTT+GGG | - | chr1_1:55884015-55884034 | Msa0030010:CDS | 5.0% |
| !! | AAATAAATATTTAAAAAGTA+AGG | - | chr1_1:55884320-55884339 | Msa0030010:intron | 5.0% |
| !! | AAAAAATAAAAATGAATAAA+TGG | + | chr1_1:55885068-55885087 | None:intergenic | 5.0% |
| !!! | ACATTTATTTATTTTTAAAT+AGG | - | chr1_1:55885359-55885378 | Msa0030010:intron | 5.0% |
| TTACCGGAAGCAAGAGTCGA+CGG | - | chr1_1:55882560-55882579 | Msa0030010:CDS | 50.0% | |
| GCTTGTGTGTTTGCGTGTGT+TGG | - | chr1_1:55884806-55884825 | Msa0030010:intron | 50.0% | |
| ! | GTGTTGGCAGCTAGGCAAAT+AGG | - | chr1_1:55884822-55884841 | Msa0030010:intron | 50.0% |
| AACTGGACTCCTCTCACTGA+GGG | + | chr1_1:55885559-55885578 | None:intergenic | 50.0% | |
| ! | AATGTTCATGGGTGGTGGCA+TGG | - | chr1_1:55885581-55885600 | Msa0030010:intron | 50.0% |
| ! | ATGTTCATGGGTGGTGGCAT+GGG | - | chr1_1:55885582-55885601 | Msa0030010:intron | 50.0% |
| CATGGTGACCCCTAGAGTTA+AGG | + | chr1_1:55886118-55886137 | None:intergenic | 50.0% | |
| !! | CTAGTGGCGGCTCTAAACAA+AGG | - | chr1_1:55886274-55886293 | Msa0030010:intron | 50.0% |
| GGGCGAGATGTTATCATGGA+CGG | - | chr1_1:55886295-55886314 | Msa0030010:intron | 50.0% | |
| TTATGACAGGAAGGGCAGTG+AGG | - | chr1_1:55886692-55886711 | Msa0030010:intron | 50.0% | |
| TATGACAGGAAGGGCAGTGA+GGG | - | chr1_1:55886693-55886712 | Msa0030010:intron | 50.0% | |
| CAGAACCAGGTTCCATTGCT+GGG | + | chr1_1:55887064-55887083 | None:intergenic | 50.0% | |
| ACAGAACCAGGTTCCATTGC+TGG | + | chr1_1:55887065-55887084 | None:intergenic | 50.0% | |
| !! | GGAACCTGGTTCTGTTTGGA+AGG | - | chr1_1:55887070-55887089 | Msa0030010:CDS | 50.0% |
| CAAGTCTCAGGATGGTGTGA+TGG | + | chr1_1:55887345-55887364 | None:intergenic | 50.0% | |
| CAGAACATGTGTGAGGCGGA+CGG | + | chr1_1:55882496-55882515 | None:intergenic | 55.0% | |
| CAGCCAGAACATGTGTGAGG+CGG | + | chr1_1:55882500-55882519 | None:intergenic | 55.0% | |
| AGGCAGCCAGAACATGTGTG+AGG | + | chr1_1:55882503-55882522 | None:intergenic | 55.0% | |
| GGCAATCAAACCGGCAAAGG+AGG | + | chr1_1:55882523-55882542 | None:intergenic | 55.0% | |
| !! | CTTTGCCGGTTTGATTGCCG+CGG | - | chr1_1:55882524-55882543 | Msa0030010:CDS | 55.0% |
| TGGTCCTAGGGATTGCGTTC+CGG | - | chr1_1:55883406-55883425 | Msa0030010:intron | 55.0% | |
| TTGACCGGAACGCAATCCCT+AGG | + | chr1_1:55883413-55883432 | None:intergenic | 55.0% | |
| GGATTGCGTTCCGGTCAAGT+TGG | - | chr1_1:55883415-55883434 | Msa0030010:intron | 55.0% | |
| ! | GTTTGCGTGTGTTGGCAGCT+AGG | - | chr1_1:55884814-55884833 | Msa0030010:intron | 55.0% |
| GAACTGGACTCCTCTCACTG+AGG | + | chr1_1:55885560-55885579 | None:intergenic | 55.0% | |
| ATCCAACTATGAGGTGCGGC+TGG | - | chr1_1:55885803-55885822 | Msa0030010:intron | 55.0% | |
| AGGAGCAGCTTCAAAGGCTG+TGG | - | chr1_1:55886046-55886065 | Msa0030010:intron | 55.0% | |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | - | chr1_1:55886807-55886826 | Msa0030010:intron | 55.0% |
| CAAGGAACCTAGCCCAGCAA+TGG | - | chr1_1:55887049-55887068 | Msa0030010:CDS | 55.0% | |
| ! | GGTTCTGGCAGCAGCCATAT+TGG | + | chr1_1:55887185-55887204 | None:intergenic | 55.0% |
| CGTCCGCCTCACACATGTTC+TGG | - | chr1_1:55882494-55882513 | Msa0030010:CDS | 60.0% | |
| ! | GTTCTGGCTGCCTCCTTTGC+CGG | - | chr1_1:55882510-55882529 | Msa0030010:CDS | 60.0% |
| CGCGGCAATCAAACCGGCAA+AGG | + | chr1_1:55882526-55882545 | None:intergenic | 60.0% | |
| AGCAGCCGCGGCAATCAAAC+CGG | + | chr1_1:55882532-55882551 | None:intergenic | 60.0% | |
| CTCTTGCTTCCGGTAACGCG+AGG | + | chr1_1:55882556-55882575 | None:intergenic | 60.0% | |
| !! | CCACCGTCGACTCTTGCTTC+CGG | + | chr1_1:55882566-55882585 | None:intergenic | 60.0% |
| TCCTCTCACTGAGGGCCATG+GGG | + | chr1_1:55885551-55885570 | None:intergenic | 60.0% | |
| CTCCTCTCACTGAGGGCCAT+GGG | + | chr1_1:55885552-55885571 | None:intergenic | 60.0% | |
| ACTCCTCTCACTGAGGGCCA+TGG | + | chr1_1:55885553-55885572 | None:intergenic | 60.0% | |
| CTCCAGCCGCACCTCATAGT+TGG | + | chr1_1:55885808-55885827 | None:intergenic | 60.0% | |
| CCAGGTTCCATTGCTGGGCT+AGG | + | chr1_1:55887059-55887078 | None:intergenic | 60.0% | |
| CCTAGCCCAGCAATGGAACC+TGG | - | chr1_1:55887056-55887075 | Msa0030010:CDS | 60.0% | |
| CCGGAAGCAAGAGTCGACGG+TGG | - | chr1_1:55882563-55882582 | Msa0030010:CDS | 65.0% | |
| TCCCCATGGCCCTCAGTGAG+AGG | - | chr1_1:55885547-55885566 | Msa0030010:intron | 65.0% | |
| ! | ATGGGTGGTGGCATGGGAGC+TGG | - | chr1_1:55885588-55885607 | Msa0030010:intron | 65.0% |
| GTAACGCGAGGCAGCAGCCG+CGG | + | chr1_1:55882544-55882563 | None:intergenic | 70.0% | |
| CGGCTGCTGCCTCGCGTTAC+CGG | - | chr1_1:55882544-55882563 | Msa0030010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55882178 | 55887434 | 55882178 | ID=Msa0030010;Name=Msa0030010 |
| chr1_1 | mRNA | 55882178 | 55887434 | 55882178 | ID=Msa0030010-mRNA-1;Parent=Msa0030010;Name=Msa0030010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=201|1|1|1|1|1|9|253|521 |
| chr1_1 | exon | 55882178 | 55882676 | 55882178 | ID=Msa0030010-mRNA-1:exon:16677;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55882784 | 55882928 | 55882784 | ID=Msa0030010-mRNA-1:exon:16676;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55883031 | 55883374 | 55883031 | ID=Msa0030010-mRNA-1:exon:16675;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55883449 | 55883578 | 55883449 | ID=Msa0030010-mRNA-1:exon:16674;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55883969 | 55884181 | 55883969 | ID=Msa0030010-mRNA-1:exon:16673;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55884396 | 55884457 | 55884396 | ID=Msa0030010-mRNA-1:exon:16672;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55884557 | 55884780 | 55884557 | ID=Msa0030010-mRNA-1:exon:16671;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55886943 | 55887134 | 55886943 | ID=Msa0030010-mRNA-1:exon:16670;Parent=Msa0030010-mRNA-1 |
| chr1_1 | exon | 55887224 | 55887434 | 55887224 | ID=Msa0030010-mRNA-1:exon:16669;Parent=Msa0030010-mRNA-1 |
| chr1_1 | five_prime_UTR | 55887234 | 55887434 | 55887234 | ID=Msa0030010-mRNA-1:five_prime_utr;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55887224 | 55887233 | 55887224 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55886943 | 55887134 | 55886943 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55884557 | 55884780 | 55884557 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55884396 | 55884457 | 55884396 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55883969 | 55884181 | 55883969 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55883449 | 55883578 | 55883449 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55883031 | 55883374 | 55883031 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55882784 | 55882928 | 55882784 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | CDS | 55882431 | 55882676 | 55882431 | ID=Msa0030010-mRNA-1:cds;Parent=Msa0030010-mRNA-1 |
| chr1_1 | three_prime_UTR | 55882178 | 55882430 | 55882178 | ID=Msa0030010-mRNA-1:three_prime_utr;Parent=Msa0030010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
