Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125240 | XP_003590783.1 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125240 | sp|Q0WUY1|NADKC_ARATH | 65.553 | 479 | 155 | 3 | 42 | 517 | 59 | 530 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125240 | G7I3Y0 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030010 | Msa0125240 | 0.984293 | 3.850988e-160 | -8.615850e-47 |
| Msa0125240 | Msa0161990 | 0.859111 | 5.184305e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125240 | MtrunA17_Chr1g0187021 | 95.777 | 521 | 21 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Msa0125240 | MtrunA17_Chr1g0187051 | 80.230 | 521 | 85 | 4 | 1 | 520 | 1 | 504 | 0.0 | 846 |
| Msa0125240 | MtrunA17_Chr1g0187071 | 70.334 | 509 | 133 | 4 | 12 | 520 | 28 | 518 | 0.0 | 686 |
| Msa0125240 | MtrunA17_Chr1g0184551 | 62.023 | 524 | 178 | 8 | 1 | 516 | 1 | 511 | 0.0 | 646 |
| Msa0125240 | MtrunA17_Chr7g0260781 | 68.508 | 362 | 103 | 4 | 158 | 516 | 17 | 370 | 1.73e-165 | 473 |
| Msa0125240 | MtrunA17_Chr7g0260791 | 48.667 | 150 | 72 | 2 | 15 | 163 | 28 | 173 | 8.47e-41 | 145 |
| Msa0125240 | MtrunA17_Chr1g0187031 | 90.385 | 52 | 5 | 0 | 17 | 68 | 4 | 55 | 6.61e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125240 | AT1G06750.3 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0125240 | AT1G06750.2 | 62.868 | 509 | 169 | 8 | 13 | 516 | 21 | 514 | 0.0 | 613 |
| Msa0125240 | AT1G06750.1 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0125240 | AT1G04280.2 | 65.553 | 479 | 155 | 3 | 42 | 517 | 5 | 476 | 0.0 | 606 |
| Msa0125240 | AT1G04280.1 | 65.553 | 479 | 155 | 3 | 42 | 517 | 59 | 530 | 0.0 | 606 |
| Msa0125240 | AT2G30630.1 | 61.569 | 510 | 176 | 8 | 12 | 516 | 27 | 521 | 0.0 | 600 |
| Msa0125240 | AT2G30630.2 | 59.322 | 531 | 175 | 9 | 12 | 516 | 27 | 542 | 0.0 | 589 |
| Msa0125240 | AT2G30630.3 | 60.104 | 386 | 134 | 8 | 12 | 392 | 27 | 397 | 6.42e-148 | 430 |
Find 150 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAACAAGTTTGCAATATT+TGG | 0.024471 | 1_3:+53651450 | None:intergenic |
| TTTCACACAAAACAGCTTAT+TGG | 0.163896 | 1_3:-53651290 | Msa0125240:intron |
| CGGCTGCTGCCTCGCGTTAC+CGG | 0.199019 | 1_3:-53655937 | Msa0125240:CDS |
| ATGGCTTTGGCAGATCATTT+TGG | 0.259344 | 1_3:-53652190 | Msa0125240:intron |
| TCTTGTCACCTTCAGATTCT+TGG | 0.267503 | 1_3:+53652757 | None:intergenic |
| GTCAGCTACAGCTTCTTCTT+TGG | 0.273218 | 1_3:-53656175 | Msa0125240:five_prime_UTR |
| CCATCCTGAGACTTGTAAAT+TGG | 0.284896 | 1_3:-53650861 | Msa0125240:three_prime_UTR |
| TGGATTTCTGCAGATATTCT+TGG | 0.288413 | 1_3:+53653324 | None:intergenic |
| GTTCTGGCTGCCTCCTTTGC+CGG | 0.296647 | 1_3:-53655971 | Msa0125240:CDS |
| TGAATCTCTCTATGTCAAAT+TGG | 0.306179 | 1_3:-53653252 | Msa0125240:CDS |
| CAAAGCATCTTTGAATATCT+TGG | 0.313200 | 1_3:-53653290 | Msa0125240:CDS |
| TCAACAAGTTTGCAATATTT+GGG | 0.315252 | 1_3:+53651451 | None:intergenic |
| ATATGTAAGTAGATGAAATA+TGG | 0.325496 | 1_3:-53656280 | Msa0125240:five_prime_UTR |
| AGCAGCCGCGGCAATCAAAC+CGG | 0.340708 | 1_3:+53655952 | None:intergenic |
| TCTTCTTCTGCTTCATTCAC+TGG | 0.342257 | 1_3:+53651763 | None:intergenic |
| CGTCCGCCTCACACATGTTC+TGG | 0.358002 | 1_3:-53655987 | Msa0125240:CDS |
| GATGCTTTGATCACATCCTT+TGG | 0.362853 | 1_3:+53653304 | None:intergenic |
| CATGCTTCAAACTGCTGAAT+TGG | 0.363240 | 1_3:-53652069 | Msa0125240:intron |
| CAATGGAACCTGGTTCTGTT+TGG | 0.366252 | 1_3:-53651145 | Msa0125240:CDS |
| GTACAATTAATGAAAATTAC+TGG | 0.366745 | 1_3:-53651789 | Msa0125240:CDS |
| CAAGTTGATAAAACAGAATC+TGG | 0.373214 | 1_3:-53655872 | Msa0125240:CDS |
| ACAGAACCAGGTTCCATTGC+TGG | 0.377964 | 1_3:+53651149 | None:intergenic |
| TTCTGAACACTTGACCTTGA+AGG | 0.379470 | 1_3:+53651104 | None:intergenic |
| CCAACTAGCTCAATTCTATA+AGG | 0.380537 | 1_3:+53651694 | None:intergenic |
| CATGGTGACCCCTAGAGTTA+AGG | 0.381657 | 1_3:+53652096 | None:intergenic |
| ATGGGTGGTGGCATGGGAGC+TGG | 0.387371 | 1_3:-53652623 | Msa0125240:CDS |
| TAAAACAGAATCTGGTCGTT+TGG | 0.388807 | 1_3:-53655864 | Msa0125240:CDS |
| CTCCTCTCACTGAGGGCCAT+GGG | 0.393070 | 1_3:+53652662 | None:intergenic |
| AATACCTTGCTCCATCTTGT+TGG | 0.394670 | 1_3:+53656109 | None:intergenic |
| GAAGAGATGAAAGTAATAAA+TGG | 0.394683 | 1_3:-53652716 | Msa0125240:CDS |
| CACAAACATAAGTACAGAAT+GGG | 0.394745 | 1_3:-53651838 | Msa0125240:CDS |
| AGCTCCATTTGTCATTAGTC+AGG | 0.402460 | 1_3:-53653177 | Msa0125240:intron |
| GGATTTCTGCAGATATTCTT+GGG | 0.404427 | 1_3:+53653325 | None:intergenic |
| CTTTGGCTCTAGTCTATTTG+TGG | 0.405028 | 1_3:-53656158 | Msa0125240:five_prime_UTR |
| ACTCCTCTCACTGAGGGCCA+TGG | 0.405385 | 1_3:+53652661 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 1_3:-53651658 | Msa0125240:CDS |
| TATACCAATTTACAAGTCTC+AGG | 0.414618 | 1_3:+53650857 | None:intergenic |
| GTGTTGGCAGCTAGGCAAAT+AGG | 0.418858 | 1_3:-53653389 | Msa0125240:intron |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 1_3:-53651651 | Msa0125240:intron |
| CCAGGTTCCATTGCTGGGCT+AGG | 0.437394 | 1_3:+53651155 | None:intergenic |
| ATGTTCATGGGTGGTGGCAT+GGG | 0.437437 | 1_3:-53652629 | Msa0125240:CDS |
| TGAATATCTTGGCAATGAAA+AGG | 0.438416 | 1_3:-53653279 | Msa0125240:CDS |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 1_3:-53651736 | Msa0125240:CDS |
| AATGTTCATGGGTGGTGGCA+TGG | 0.442939 | 1_3:-53652630 | Msa0125240:CDS |
| CAAGTGTTCAGAAAGAGTTA+AGG | 0.445444 | 1_3:-53651094 | Msa0125240:CDS |
| ATGGTGACCCCTAGAGTTAA+GGG | 0.446844 | 1_3:+53652097 | None:intergenic |
| GGTTCTGGCAGCAGCCATAT+TGG | 0.447845 | 1_3:+53651029 | None:intergenic |
| TATATAAAGCCCTTAACTCT+AGG | 0.453952 | 1_3:-53652106 | Msa0125240:CDS |
| GAAGCTGAAAGAAATTCTAT+TGG | 0.458873 | 1_3:-53653027 | Msa0125240:CDS |
| CGCGGCAATCAAACCGGCAA+AGG | 0.461673 | 1_3:+53655958 | None:intergenic |
| TTCCATCTGTGAACTTTACA+AGG | 0.465735 | 1_3:-53651180 | Msa0125240:CDS |
| GTAAATTGGTATAAATGAAA+AGG | 0.471849 | 1_3:-53650847 | Msa0125240:three_prime_UTR |
| TTACTAAGATAAGAAAGAAA+AGG | 0.473764 | 1_3:-53650938 | Msa0125240:three_prime_UTR |
| CCACCCATGAACATTAGAAC+TGG | 0.479997 | 1_3:+53652638 | None:intergenic |
| TGAACCTGACTAATGACAAA+TGG | 0.484525 | 1_3:+53653173 | None:intergenic |
| ATATAAAGCCCTTAACTCTA+GGG | 0.487320 | 1_3:-53652105 | Msa0125240:CDS |
| GCAATAGTCTGCTCGACAAA+AGG | 0.487335 | 1_3:+53651877 | None:intergenic |
| AAGTGTTCAGAAAGAGTTAA+GGG | 0.487553 | 1_3:-53651093 | Msa0125240:CDS |
| GACAAAAGGTTCCCATGATA+AGG | 0.487948 | 1_3:+53651891 | None:intergenic |
| GAGTCCAGTTCTAATGTTCA+TGG | 0.488035 | 1_3:-53652642 | Msa0125240:CDS |
| CAAGTCTCAGGATGGTGTGA+TGG | 0.488644 | 1_3:+53650869 | None:intergenic |
| TCATGGACGGTACCTTATCA+TGG | 0.491092 | 1_3:-53651903 | Msa0125240:CDS |
| GACAAGAGTGTTCTCTACTT+TGG | 0.492501 | 1_3:-53652741 | Msa0125240:CDS |
| CCACCGTCGACTCTTGCTTC+CGG | 0.496739 | 1_3:+53655918 | None:intergenic |
| AACAGGAGAGCTATTATGAC+AGG | 0.506463 | 1_3:-53651532 | Msa0125240:intron |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 1_3:-53651441 | Msa0125240:CDS |
| GGCAATCAAACCGGCAAAGG+AGG | 0.512110 | 1_3:+53655961 | None:intergenic |
| AAGACAGTAACACTTGGTTC+TGG | 0.512285 | 1_3:+53651014 | None:intergenic |
| GTTCTAATGTTCATGGGTGG+TGG | 0.513078 | 1_3:-53652635 | Msa0125240:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 1_3:-53651679 | Msa0125240:CDS |
| TCACAAACATAAGTACAGAA+TGG | 0.515042 | 1_3:-53651839 | Msa0125240:CDS |
| CCTTATAGAATTGAGCTAGT+TGG | 0.515063 | 1_3:-53651694 | Msa0125240:CDS |
| ACTTACATATATTAAATAAG+TGG | 0.515405 | 1_3:+53656293 | None:intergenic |
| CCTAGCCCAGCAATGGAACC+TGG | 0.516557 | 1_3:-53651155 | Msa0125240:CDS |
| GGAACCTGGTTCTGTTTGGA+AGG | 0.517649 | 1_3:-53651141 | Msa0125240:CDS |
| TCCTCTCACTGAGGGCCATG+GGG | 0.524414 | 1_3:+53652663 | None:intergenic |
| TAGAGATGATGCAGCATCAG+TGG | 0.527175 | 1_3:+53651960 | None:intergenic |
| AGGAGCAGCTTCAAAGGCTG+TGG | 0.528800 | 1_3:-53652165 | Msa0125240:CDS |
| TTCAAAGGCTGTGGTTGTTG+AGG | 0.529864 | 1_3:-53652156 | Msa0125240:CDS |
| ACACAAAACAGCTTATTGGA+TGG | 0.530711 | 1_3:-53651286 | Msa0125240:intron |
| CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 1_3:-53651418 | Msa0125240:CDS |
| TTCCTTGTAAAGTTCACAGA+TGG | 0.536025 | 1_3:+53651178 | None:intergenic |
| TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 1_3:-53651415 | Msa0125240:CDS |
| TTGGTTAGGAGCAGCTTCAA+AGG | 0.537556 | 1_3:-53652171 | Msa0125240:CDS |
| TGTCGAGCAGACTATTGCTA+TGG | 0.539450 | 1_3:-53651872 | Msa0125240:CDS |
| AAGTCTCAGGATGGTGTGAT+GGG | 0.544656 | 1_3:+53650870 | None:intergenic |
| GTAACGCGAGGCAGCAGCCG+CGG | 0.551342 | 1_3:+53655940 | None:intergenic |
| CAGAACCAGGTTCCATTGCT+GGG | 0.554057 | 1_3:+53651150 | None:intergenic |
| AAATTCTATTGGCAGCTACA+AGG | 0.556844 | 1_3:-53653016 | Msa0125240:intron |
| TAGAATTGAGCTAGTTGGTG+TGG | 0.559029 | 1_3:-53651689 | Msa0125240:CDS |
| CCACTTGATTTGAGTGCTAG+AGG | 0.560233 | 1_3:-53656212 | Msa0125240:five_prime_UTR |
| AATCTCAATCTCCAACAAGA+TGG | 0.565138 | 1_3:-53656120 | Msa0125240:exon |
| CAAAGGGCGAGATGTTATCA+TGG | 0.565583 | 1_3:-53651920 | Msa0125240:CDS |
| TCCCCATGGCCCTCAGTGAG+AGG | 0.570944 | 1_3:-53652664 | Msa0125240:CDS |
| TTCACAAACTAAAGAAGTCA+TGG | 0.573532 | 1_3:-53652687 | Msa0125240:CDS |
| AGTGCTAGAGGTAACAATCA+AGG | 0.575528 | 1_3:-53656200 | Msa0125240:five_prime_UTR |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 1_3:-53651404 | Msa0125240:intron |
| AAATCCTTCCAAACAGAACC+AGG | 0.577494 | 1_3:+53651137 | None:intergenic |
| TATGACAGGAAGGGCAGTGA+GGG | 0.577678 | 1_3:-53651518 | Msa0125240:CDS |
| GGAGAGCTATTATGACAGGA+AGG | 0.580051 | 1_3:-53651528 | Msa0125240:CDS |
| GAAAAGTTCTCCCACTATGT+TGG | 0.580569 | 1_3:-53655833 | Msa0125240:intron |
| AGAAGAAGAACATCAACAAG+AGG | 0.581089 | 1_3:-53651749 | Msa0125240:CDS |
| CAAGGAACCTAGCCCAGCAA+TGG | 0.583071 | 1_3:-53651162 | Msa0125240:CDS |
| GCATTACATACCAACATAGT+GGG | 0.583296 | 1_3:+53655823 | None:intergenic |
| TACAATTAATGAAAATTACT+GGG | 0.585080 | 1_3:-53651788 | Msa0125240:CDS |
| AACTGGACTCCTCTCACTGA+GGG | 0.586342 | 1_3:+53652655 | None:intergenic |
| CAGCTTATTGGATGGAAGGA+GGG | 0.587320 | 1_3:-53651278 | Msa0125240:CDS |
| AAAACAGCTTATTGGATGGA+AGG | 0.588568 | 1_3:-53651282 | Msa0125240:intron |
| CAGAACATGTGTGAGGCGGA+CGG | 0.590928 | 1_3:+53655988 | None:intergenic |
| ATCTCCAACAAGATGGAGCA+AGG | 0.592137 | 1_3:-53656113 | Msa0125240:intron |
| TAGTGGCGGCTCTAAACAAA+GGG | 0.593741 | 1_3:-53651936 | Msa0125240:CDS |
| CTTCATAAGACAGTAACACT+TGG | 0.596432 | 1_3:+53651008 | None:intergenic |
| CATGGACGGTACCTTATCAT+GGG | 0.596728 | 1_3:-53651902 | Msa0125240:CDS |
| TGCATCATCTCTACTAGTGG+CGG | 0.597453 | 1_3:-53651950 | Msa0125240:CDS |
| TAAAGAAGTCATGGTCCCCA+TGG | 0.598959 | 1_3:-53652678 | Msa0125240:CDS |
| TGCTGCATCATCTCTACTAG+TGG | 0.599865 | 1_3:-53651953 | Msa0125240:CDS |
| AGTCCAGTTCTAATGTTCAT+GGG | 0.602486 | 1_3:-53652641 | Msa0125240:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 1_3:-53651735 | Msa0125240:CDS |
| GAGATGAAAGTAATAAATGG+TGG | 0.609786 | 1_3:-53652713 | Msa0125240:CDS |
| CCTCTAGCACTCAAATCAAG+TGG | 0.612479 | 1_3:+53656212 | None:intergenic |
| AATCTACTAGAGGATCCTGT+TGG | 0.613839 | 1_3:-53651248 | Msa0125240:CDS |
| CAGTTTGAAGCATGTCAGCA+TGG | 0.615090 | 1_3:+53652078 | None:intergenic |
| AGCATTACATACCAACATAG+TGG | 0.615576 | 1_3:+53655822 | None:intergenic |
| ACAGCTTATTGGATGGAAGG+AGG | 0.616233 | 1_3:-53651279 | Msa0125240:intron |
| GGATATAAAGTAGCTGAGGA+TGG | 0.616295 | 1_3:-53651811 | Msa0125240:CDS |
| GGTAGGATATAAAGTAGCTG+AGG | 0.616503 | 1_3:-53651815 | Msa0125240:CDS |
| TGGGCAAGTATGCATAACTC+TGG | 0.617131 | 1_3:+53653344 | None:intergenic |
| GGGCGAGATGTTATCATGGA+CGG | 0.617614 | 1_3:-53651916 | Msa0125240:CDS |
| GAGAGCTATTATGACAGGAA+GGG | 0.618202 | 1_3:-53651527 | Msa0125240:CDS |
| GAATATCTGCAGAAATCCAA+AGG | 0.620570 | 1_3:-53653320 | Msa0125240:CDS |
| CTCTTGCTTCCGGTAACGCG+AGG | 0.623457 | 1_3:+53655928 | None:intergenic |
| TGTTCACATACAGGAAACAA+AGG | 0.629269 | 1_3:-53652793 | Msa0125240:intron |
| CTAGTGGCGGCTCTAAACAA+AGG | 0.630500 | 1_3:-53651937 | Msa0125240:CDS |
| AGGATTTGAAGATGCAAGTG+AGG | 0.631153 | 1_3:-53653369 | Msa0125240:CDS |
| GAGAGTAACCAAGAATCTGA+AGG | 0.632638 | 1_3:-53652765 | Msa0125240:CDS |
| CTTTGCCGGTTTGATTGCCG+CGG | 0.633840 | 1_3:-53655957 | Msa0125240:CDS |
| CCAATTTACAAGTCTCAGGA+TGG | 0.634688 | 1_3:+53650861 | None:intergenic |
| CCAGTTCTAATGTTCATGGG+TGG | 0.641784 | 1_3:-53652638 | Msa0125240:CDS |
| TATAAAGCCCTTAACTCTAG+GGG | 0.644037 | 1_3:-53652104 | Msa0125240:CDS |
| CAGCCAGAACATGTGTGAGG+CGG | 0.646050 | 1_3:+53655984 | None:intergenic |
| GGGTGATCACAATCTACTAG+AGG | 0.647681 | 1_3:-53651258 | Msa0125240:CDS |
| AATGAAATGCAAAATAACTG+AGG | 0.656048 | 1_3:+53653207 | None:intergenic |
| TTACCGGAAGCAAGAGTCGA+CGG | 0.658682 | 1_3:-53655921 | Msa0125240:CDS |
| ACAAACATAAGTACAGAATG+GGG | 0.664528 | 1_3:-53651837 | Msa0125240:CDS |
| AGGCAGCCAGAACATGTGTG+AGG | 0.672431 | 1_3:+53655981 | None:intergenic |
| GAACTGGACTCCTCTCACTG+AGG | 0.673724 | 1_3:+53652654 | None:intergenic |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 1_3:-53651734 | Msa0125240:CDS |
| TTATGACAGGAAGGGCAGTG+AGG | 0.719044 | 1_3:-53651519 | Msa0125240:CDS |
| CAAACATAAGTACAGAATGG+GGG | 0.724586 | 1_3:-53651836 | Msa0125240:CDS |
| CCGGAAGCAAGAGTCGACGG+TGG | 0.756030 | 1_3:-53655918 | Msa0125240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTATTTTTA+TGG | - | chr1_3:53656185-53656204 | Msa0125240:five_prime_UTR | 0.0% |
| !!! | TTTTATTTTTTTATTTTTAT+GGG | - | chr1_3:53656186-53656205 | Msa0125240:five_prime_UTR | 0.0% |
| !! | TAATCTATAAATATTTATGT+CGG | - | chr1_3:53651785-53651804 | Msa0125240:CDS | 10.0% |
| !!! | TTTTAATTAACAATTTATGT+GGG | + | chr1_3:53651861-53651880 | None:intergenic | 10.0% |
| !! | AAAATTAAATGATTTGAATT+GGG | + | chr1_3:53652900-53652919 | None:intergenic | 10.0% |
| !! | AAAAATTAAATGATTTGAAT+TGG | + | chr1_3:53652901-53652920 | None:intergenic | 10.0% |
| !!! | TCAAATCATTTAATTTTTTT+TGG | - | chr1_3:53652903-53652922 | Msa0125240:intron | 10.0% |
| !! | ATTCAAAACAATTTATTATT+AGG | + | chr1_3:53653059-53653078 | None:intergenic | 10.0% |
| !!! | TCAAAACAATTTTTTTTTTT+AGG | + | chr1_3:53653083-53653102 | None:intergenic | 10.0% |
| !! | ACTTACATATATTAAATAAG+TGG | + | chr1_3:53650809-53650828 | None:intergenic | 15.0% |
| !! | AAATCACTACTATAATATAA+AGG | - | chr1_3:53651558-53651577 | Msa0125240:intron | 15.0% |
| !! | AAAAGAAAATTCTCATATTA+TGG | - | chr1_3:53651606-53651625 | Msa0125240:intron | 15.0% |
| !! | AAAGAAAATTCTCATATTAT+GGG | - | chr1_3:53651607-53651626 | Msa0125240:intron | 15.0% |
| !! | ATCAAAAAATTGTAACAAAA+TGG | - | chr1_3:53651722-53651741 | Msa0125240:CDS | 15.0% |
| !!! | CTTTTAATTAACAATTTATG+TGG | + | chr1_3:53651862-53651881 | None:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | + | chr1_3:53651992-53652011 | None:intergenic | 15.0% |
| !! | TAGATAATTAAAGATATCAA+CGG | - | chr1_3:53652096-53652115 | Msa0125240:CDS | 15.0% |
| !! | ATACCCAAATAAATATTATT+TGG | - | chr1_3:53652304-53652323 | Msa0125240:intron | 15.0% |
| !! | TACCCAAATAAATATTATTT+GGG | - | chr1_3:53652305-53652324 | Msa0125240:intron | 15.0% |
| !!! | ACATTAACTATTTTCATATA+AGG | - | chr1_3:53652685-53652704 | Msa0125240:CDS | 15.0% |
| !! | ACATTAAGTAAGTATATTAA+TGG | - | chr1_3:53652737-53652756 | Msa0125240:CDS | 15.0% |
| !! | CATTAAGTAAGTATATTAAT+GGG | - | chr1_3:53652738-53652757 | Msa0125240:CDS | 15.0% |
| !! | AAATTAAATGATTTGAATTG+GGG | + | chr1_3:53652899-53652918 | None:intergenic | 15.0% |
| !! | AATCATTTGAATTAACTAAA+TGG | - | chr1_3:53652932-53652951 | Msa0125240:intron | 15.0% |
| !! | AACTTTAGTCTATAAAAATT+AGG | - | chr1_3:53653178-53653197 | Msa0125240:CDS | 15.0% |
| !! | AACATTAATATTTCATTGAA+GGG | + | chr1_3:53653605-53653624 | None:intergenic | 15.0% |
| !!! | CAAAATTCAGAATTTTAATT+TGG | - | chr1_3:53653672-53653691 | Msa0125240:intron | 15.0% |
| !!! | TATAATGATGTAACATTTTA+AGG | + | chr1_3:53654201-53654220 | None:intergenic | 15.0% |
| !! | TTATGCCTAAATAAATATTA+TGG | - | chr1_3:53654890-53654909 | Msa0125240:intron | 15.0% |
| !! | TACAATTAATGAAAATTACT+GGG | - | chr1_3:53655311-53655330 | Msa0125240:intron | 15.0% |
| !! | ACTTTATTAATATACTTTAG+TGG | - | chr1_3:53655494-53655513 | Msa0125240:intron | 15.0% |
| !!! | TTTTTTATTTTTATGGGTTT+TGG | - | chr1_3:53656192-53656211 | Msa0125240:five_prime_UTR | 15.0% |
| !! | ATATGTAAGTAGATGAAATA+TGG | - | chr1_3:53650819-53650838 | Msa0125240:three_prime_UTR | 20.0% |
| !! | AAAGAAAAAAAAGTAGTGTA+AGG | - | chr1_3:53651483-53651502 | Msa0125240:CDS | 20.0% |
| !!! | TTCTTTTGAAGGATAATTTT+AGG | + | chr1_3:53651593-53651612 | None:intergenic | 20.0% |
| !!! | ATATGAGAATTTTCTTTTGA+AGG | + | chr1_3:53651604-53651623 | None:intergenic | 20.0% |
| !! | AAGAAAATTCTCATATTATG+GGG | - | chr1_3:53651608-53651627 | Msa0125240:intron | 20.0% |
| !!! | ATTGGACATGTATTTTAAAA+CGG | + | chr1_3:53651933-53651952 | None:intergenic | 20.0% |
| !! | AAAGAAAGATAATTCAAAAC+AGG | - | chr1_3:53652242-53652261 | Msa0125240:intron | 20.0% |
| !! | AAGAAAGATAATTCAAAACA+GGG | - | chr1_3:53652243-53652262 | Msa0125240:intron | 20.0% |
| !! | TGCCCAAATAATATTTATTT+GGG | + | chr1_3:53652310-53652329 | None:intergenic | 20.0% |
| !! | TACCTAAATCAACATTATTT+GGG | + | chr1_3:53652419-53652438 | None:intergenic | 20.0% |
| !! | ATACCTAAATCAACATTATT+TGG | + | chr1_3:53652420-53652439 | None:intergenic | 20.0% |
| !!! | AACATGTGTCATATTTTTAT+TGG | + | chr1_3:53652517-53652536 | None:intergenic | 20.0% |
| !!! | AACTAAATGGAAATTGATTT+AGG | - | chr1_3:53652945-53652964 | Msa0125240:intron | 20.0% |
| !!! | TTAAGCTTTGAATATTTGAT+AGG | + | chr1_3:53653136-53653155 | None:intergenic | 20.0% |
| !! | TAACTTAATTAAGACTATCT+TGG | + | chr1_3:53653269-53653288 | None:intergenic | 20.0% |
| !! | TGTTTACAAATTTACTCTAA+AGG | + | chr1_3:53653351-53653370 | None:intergenic | 20.0% |
| !! | ACGAATGTAATAAAAAATAG+CGG | - | chr1_3:53653452-53653471 | Msa0125240:intron | 20.0% |
| !! | TAAGAACAAAAATATCAACA+AGG | + | chr1_3:53653543-53653562 | None:intergenic | 20.0% |
| !! | CAACATTAATATTTCATTGA+AGG | + | chr1_3:53653606-53653625 | None:intergenic | 20.0% |
| !! | CAAAGCCATAATATTTATTT+AGG | + | chr1_3:53654898-53654917 | None:intergenic | 20.0% |
| !! | CTAAATAAATATTATGGCTT+TGG | - | chr1_3:53654896-53654915 | Msa0125240:intron | 20.0% |
| !! | GTACAATTAATGAAAATTAC+TGG | - | chr1_3:53655310-53655329 | Msa0125240:intron | 20.0% |
| !!! | TATAGTTAACATTTTCCTTT+TGG | - | chr1_3:53655538-53655557 | Msa0125240:intron | 20.0% |
| !! | TTACTAAGATAAGAAAGAAA+AGG | - | chr1_3:53656161-53656180 | Msa0125240:five_prime_UTR | 20.0% |
| !! | GTAAATTGGTATAAATGAAA+AGG | - | chr1_3:53656252-53656271 | Msa0125240:five_prime_UTR | 20.0% |
| !!! | AGTTCATAATGTTTTTCAGA+TGG | - | chr1_3:53651077-53651096 | Msa0125240:CDS | 25.0% |
| !!! | TAATGTTTTTCAGATGGTAT+TGG | - | chr1_3:53651083-53651102 | Msa0125240:CDS | 25.0% |
| !!! | ATGTAATGCTTCACTTTTTT+TGG | - | chr1_3:53651290-53651309 | Msa0125240:intron | 25.0% |
| !!! | TGTAATGCTTCACTTTTTTT+GGG | - | chr1_3:53651291-53651310 | Msa0125240:intron | 25.0% |
| !! | ATTCATTTCTCTTTTGTTAG+AGG | - | chr1_3:53651761-53651780 | Msa0125240:CDS | 25.0% |
| !! | TTCATTTCTCTTTTGTTAGA+GGG | - | chr1_3:53651762-53651781 | Msa0125240:CDS | 25.0% |
| !!! | ATATTTATGTCGGTGTTTTT+TGG | - | chr1_3:53651795-53651814 | Msa0125240:CDS | 25.0% |
| !! | TTAAATTTTTGTTCAGCGTT+CGG | - | chr1_3:53652202-53652221 | Msa0125240:intron | 25.0% |
| ! | AGAAAGATAATTCAAAACAG+GGG | - | chr1_3:53652244-53652263 | Msa0125240:intron | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | + | chr1_3:53652311-53652330 | None:intergenic | 25.0% |
| ! | TCAATGAAAAAAGTCTTTCA+TGG | + | chr1_3:53652447-53652466 | None:intergenic | 25.0% |
| !!! | GTGTCATATTTTTATTGGTT+GGG | + | chr1_3:53652512-53652531 | None:intergenic | 25.0% |
| !!! | TGTGTCATATTTTTATTGGT+TGG | + | chr1_3:53652513-53652532 | None:intergenic | 25.0% |
| ! | TTGAAATTTCGATACATTGA+AGG | - | chr1_3:53652838-53652857 | Msa0125240:intron | 25.0% |
| ! | AAGGAATATTGTAGATACAA+AGG | - | chr1_3:53652857-53652876 | Msa0125240:intron | 25.0% |
| !! | AAATGGAAATTGATTTAGGT+AGG | - | chr1_3:53652949-53652968 | Msa0125240:intron | 25.0% |
| !! | TATCTGACGTTAATTTGATT+GGG | + | chr1_3:53653023-53653042 | None:intergenic | 25.0% |
| !! | ATATCTGACGTTAATTTGAT+TGG | + | chr1_3:53653024-53653043 | None:intergenic | 25.0% |
| ! | ATCACAAGAATTAAGAAAGT+TGG | + | chr1_3:53653405-53653424 | None:intergenic | 25.0% |
| ! | CGAATGTAATAAAAAATAGC+GGG | - | chr1_3:53653453-53653472 | Msa0125240:intron | 25.0% |
| ! | TTAATATTTCATTGAAGGGA+GGG | + | chr1_3:53653601-53653620 | None:intergenic | 25.0% |
| ! | ATTAATATTTCATTGAAGGG+AGG | + | chr1_3:53653602-53653621 | None:intergenic | 25.0% |
| ! | AATGAAATGCAAAATAACTG+AGG | + | chr1_3:53653895-53653914 | None:intergenic | 25.0% |
| !!! | TCAGTTATTTTGCATTTCAT+TGG | - | chr1_3:53653894-53653913 | Msa0125240:intron | 25.0% |
| ! | TTATAGAGTTAGACAATTCA+AGG | - | chr1_3:53654216-53654235 | Msa0125240:intron | 25.0% |
| ! | GAAGAGATGAAAGTAATAAA+TGG | - | chr1_3:53654383-53654402 | Msa0125240:intron | 25.0% |
| ! | GACATTAAATAATCCAACAA+TGG | + | chr1_3:53654658-53654677 | None:intergenic | 25.0% |
| ! | GATTATTTAATGTCTGCATT+TGG | - | chr1_3:53654664-53654683 | Msa0125240:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | - | chr1_3:53654797-53654816 | Msa0125240:intron | 25.0% |
| ! | AAACATTTCAAAATCTGTAC+AGG | - | chr1_3:53655104-53655123 | Msa0125240:intron | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | - | chr1_3:53655550-53655569 | Msa0125240:intron | 25.0% |
| ! | TCAACAAGTTTGCAATATTT+GGG | + | chr1_3:53655651-53655670 | None:intergenic | 25.0% |
| ! | GATTCTGTTTTATCAACTTG+AGG | + | chr1_3:53651227-53651246 | None:intergenic | 30.0% |
| !! | CAAGTTGATAAAACAGAATC+TGG | - | chr1_3:53651227-53651246 | Msa0125240:CDS | 30.0% |
| ACAGTGAGATTGAAAAAGAA+AGG | + | chr1_3:53651346-53651365 | None:intergenic | 30.0% | |
| !!! | GACATGTATTTTAAAACGGA+GGG | + | chr1_3:53651929-53651948 | None:intergenic | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | + | chr1_3:53651951-53651970 | None:intergenic | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr1_3:53652154-53652173 | Msa0125240:CDS | 30.0% |
| ! | TAAATTTTTGTTCAGCGTTC+GGG | - | chr1_3:53652203-53652222 | Msa0125240:intron | 30.0% |
| !! | TGCCCAAATAATGTTGATTT+AGG | - | chr1_3:53652414-53652433 | Msa0125240:intron | 30.0% |
| GGGTGAAAGAATAATATCTT+AGG | + | chr1_3:53652492-53652511 | None:intergenic | 30.0% | |
| ! | ATAGTTAATGTCAGTGTTGA+AGG | + | chr1_3:53652676-53652695 | None:intergenic | 30.0% |
| AACAAGGTCATTCTTTACTA+GGG | + | chr1_3:53653527-53653546 | None:intergenic | 30.0% | |
| ! | CAAAGCATCTTTGAATATCT+TGG | - | chr1_3:53653809-53653828 | Msa0125240:intron | 30.0% |
| TGAATATCTTGGCAATGAAA+AGG | - | chr1_3:53653820-53653839 | Msa0125240:intron | 30.0% | |
| TGAATCTCTCTATGTCAAAT+TGG | - | chr1_3:53653847-53653866 | Msa0125240:intron | 30.0% | |
| ! | AGTTTTCAGTACCTAGAATT+TGG | + | chr1_3:53654035-53654054 | None:intergenic | 30.0% |
| GAAGCTGAAAGAAATTCTAT+TGG | - | chr1_3:53654072-53654091 | Msa0125240:intron | 30.0% | |
| GAGATGAAAGTAATAAATGG+TGG | - | chr1_3:53654386-53654405 | Msa0125240:intron | 30.0% | |
| TTCACAAACTAAAGAAGTCA+TGG | - | chr1_3:53654412-53654431 | Msa0125240:intron | 30.0% | |
| ATAATCCAACAATGGAATTG+AGG | + | chr1_3:53654650-53654669 | None:intergenic | 30.0% | |
| TATATAAAGCCCTTAACTCT+AGG | - | chr1_3:53654993-53655012 | Msa0125240:intron | 30.0% | |
| ATATAAAGCCCTTAACTCTA+GGG | - | chr1_3:53654994-53655013 | Msa0125240:intron | 30.0% | |
| ACCTTCATGAAATGTTACTA+TGG | - | chr1_3:53655067-53655086 | Msa0125240:intron | 30.0% | |
| ACCATAGTAACATTTCATGA+AGG | + | chr1_3:53655071-53655090 | None:intergenic | 30.0% | |
| TCACAAACATAAGTACAGAA+TGG | - | chr1_3:53655260-53655279 | Msa0125240:intron | 30.0% | |
| CACAAACATAAGTACAGAAT+GGG | - | chr1_3:53655261-53655280 | Msa0125240:intron | 30.0% | |
| ACAAACATAAGTACAGAATG+GGG | - | chr1_3:53655262-53655281 | Msa0125240:intron | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | - | chr1_3:53655364-53655383 | Msa0125240:intron | 30.0% | |
| ATTAGGTGTATATATGCTTG+TGG | - | chr1_3:53655465-53655484 | Msa0125240:intron | 30.0% | |
| TCTCCTGTTAAAATTCCAAA+AGG | + | chr1_3:53655556-53655575 | None:intergenic | 30.0% | |
| GTCAACAAGTTTGCAATATT+TGG | + | chr1_3:53655652-53655671 | None:intergenic | 30.0% | |
| TTTCACACAAAACAGCTTAT+TGG | - | chr1_3:53655809-53655828 | Msa0125240:intron | 30.0% | |
| AAAAGCTTGAAAAATGTAGC+AGG | - | chr1_3:53655878-53655897 | Msa0125240:CDS | 30.0% | |
| AAGTGTTCAGAAAGAGTTAA+GGG | - | chr1_3:53656006-53656025 | Msa0125240:CDS | 30.0% | |
| !!! | GGACTTCTCTATTTTTTGAA+TGG | + | chr1_3:53656035-53656054 | None:intergenic | 30.0% |
| ! | TATTGGTCACATTTTTCTGA+TGG | + | chr1_3:53656056-53656075 | None:intergenic | 30.0% |
| TCAGAAAAATGTGACCAATA+TGG | - | chr1_3:53656056-53656075 | Msa0125240:intron | 30.0% | |
| !!! | TTTTATGGGTTTTGGACTTT+TGG | - | chr1_3:53656200-53656219 | Msa0125240:five_prime_UTR | 30.0% |
| TATACCAATTTACAAGTCTC+AGG | + | chr1_3:53656245-53656264 | None:intergenic | 30.0% | |
| AATCTCAATCTCCAACAAGA+TGG | - | chr1_3:53650979-53650998 | Msa0125240:three_prime_UTR | 35.0% | |
| TAAAACAGAATCTGGTCGTT+TGG | - | chr1_3:53651235-53651254 | Msa0125240:CDS | 35.0% | |
| GCATTACATACCAACATAGT+GGG | + | chr1_3:53651279-53651298 | None:intergenic | 35.0% | |
| AGCATTACATACCAACATAG+TGG | + | chr1_3:53651280-53651299 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGAGGCTATCATTT+TGG | + | chr1_3:53651438-53651457 | None:intergenic | 35.0% |
| ! | AATACACCACTTGAGTTTTG+AGG | + | chr1_3:53651450-53651469 | None:intergenic | 35.0% |
| AGTGGTGTATTAGTCAAAAG+AGG | - | chr1_3:53651459-53651478 | Msa0125240:CDS | 35.0% | |
| !!! | TTTTGAAACTCGACGAACAA+AGG | + | chr1_3:53651833-53651852 | None:intergenic | 35.0% |
| !!! | GGACATGTATTTTAAAACGG+AGG | + | chr1_3:53651930-53651949 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+TGG | - | chr1_3:53652158-53652177 | Msa0125240:CDS | 35.0% |
| !! | ACAGGGGTAATAGTCATTTT+CGG | - | chr1_3:53652260-53652279 | Msa0125240:intron | 35.0% |
| GATAGATTGAAAAACGACTC+TGG | + | chr1_3:53652587-53652606 | None:intergenic | 35.0% | |
| TGGTGAATGAGAGAATTCAT+TGG | + | chr1_3:53653249-53653268 | None:intergenic | 35.0% | |
| ! | GTAATAAAAAATAGCGGGAC+AGG | - | chr1_3:53653458-53653477 | Msa0125240:intron | 35.0% |
| CAACAAGGTCATTCTTTACT+AGG | + | chr1_3:53653528-53653547 | None:intergenic | 35.0% | |
| AATTGTTGCCATATACTAGC+AGG | - | chr1_3:53653564-53653583 | Msa0125240:intron | 35.0% | |
| AAAGCTTACCTGCTAGTATA+TGG | + | chr1_3:53653575-53653594 | None:intergenic | 35.0% | |
| GGATTTCTGCAGATATTCTT+GGG | + | chr1_3:53653777-53653796 | None:intergenic | 35.0% | |
| TGGATTTCTGCAGATATTCT+TGG | + | chr1_3:53653778-53653797 | None:intergenic | 35.0% | |
| GAATATCTGCAGAAATCCAA+AGG | - | chr1_3:53653779-53653798 | Msa0125240:intron | 35.0% | |
| TGAACCTGACTAATGACAAA+TGG | + | chr1_3:53653929-53653948 | None:intergenic | 35.0% | |
| ACGTACTCAATACTTAACTG+AGG | + | chr1_3:53654002-53654021 | None:intergenic | 35.0% | |
| GTATTGAGTACGTCTTTCTT+CGG | - | chr1_3:53654009-53654028 | Msa0125240:intron | 35.0% | |
| AAATTCTATTGGCAGCTACA+AGG | - | chr1_3:53654083-53654102 | Msa0125240:intron | 35.0% | |
| TGCTGTATATGTTCACATAC+AGG | - | chr1_3:53654297-53654316 | Msa0125240:intron | 35.0% | |
| TGTTCACATACAGGAAACAA+AGG | - | chr1_3:53654306-53654325 | Msa0125240:intron | 35.0% | |
| ! | AGTCCAGTTCTAATGTTCAT+GGG | - | chr1_3:53654458-53654477 | Msa0125240:intron | 35.0% |
| TTTGGATCAATCCAACTATG+AGG | - | chr1_3:53654682-53654701 | Msa0125240:intron | 35.0% | |
| !!! | TTTGGCAGATCATTTTGGTT+AGG | - | chr1_3:53654914-53654933 | Msa0125240:intron | 35.0% |
| TATAAAGCCCTTAACTCTAG+GGG | - | chr1_3:53654995-53655014 | Msa0125240:intron | 35.0% | |
| CAAACATAAGTACAGAATGG+GGG | - | chr1_3:53655263-53655282 | Msa0125240:intron | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | - | chr1_3:53655350-53655369 | Msa0125240:intron | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | - | chr1_3:53655363-53655382 | Msa0125240:intron | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | - | chr1_3:53655365-53655384 | Msa0125240:intron | 35.0% | |
| CCAACTAGCTCAATTCTATA+AGG | + | chr1_3:53655408-53655427 | None:intergenic | 35.0% | |
| CCTTATAGAATTGAGCTAGT+TGG | - | chr1_3:53655405-53655424 | Msa0125240:intron | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | - | chr1_3:53655441-53655460 | Msa0125240:intron | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | - | chr1_3:53655448-53655467 | Msa0125240:intron | 35.0% |
| !!! | GTTGATCCTGTTTTTACCTT+TGG | + | chr1_3:53655714-53655733 | None:intergenic | 35.0% |
| TGTAAAATCAATCACAGTCG+AGG | + | chr1_3:53655740-53655759 | None:intergenic | 35.0% | |
| ACACAAAACAGCTTATTGGA+TGG | - | chr1_3:53655813-53655832 | Msa0125240:intron | 35.0% | |
| AAAACAGCTTATTGGATGGA+AGG | - | chr1_3:53655817-53655836 | Msa0125240:intron | 35.0% | |
| ! | TTCAAGCTTTTGATACCAAC+AGG | + | chr1_3:53655869-53655888 | None:intergenic | 35.0% |
| TTCCATCTGTGAACTTTACA+AGG | - | chr1_3:53655919-53655938 | Msa0125240:CDS | 35.0% | |
| TTCCTTGTAAAGTTCACAGA+TGG | + | chr1_3:53655924-53655943 | None:intergenic | 35.0% | |
| ! | ATTTTGTTCTGTCACCTTCA+AGG | - | chr1_3:53655981-53656000 | Msa0125240:CDS | 35.0% |
| CAAGTGTTCAGAAAGAGTTA+AGG | - | chr1_3:53656005-53656024 | Msa0125240:CDS | 35.0% | |
| CTTCATAAGACAGTAACACT+TGG | + | chr1_3:53656094-53656113 | None:intergenic | 35.0% | |
| AGTGCTAGAGGTAACAATCA+AGG | - | chr1_3:53650899-53650918 | Msa0125240:three_prime_UTR | 40.0% | |
| !! | CTTTGGCTCTAGTCTATTTG+TGG | - | chr1_3:53650941-53650960 | Msa0125240:three_prime_UTR | 40.0% |
| AATACCTTGCTCCATCTTGT+TGG | + | chr1_3:53650993-53651012 | None:intergenic | 40.0% | |
| GAAAAGTTCTCCCACTATGT+TGG | - | chr1_3:53651266-53651285 | Msa0125240:CDS | 40.0% | |
| TGATAGCCTCAAAACTCAAG+TGG | - | chr1_3:53651441-53651460 | Msa0125240:CDS | 40.0% | |
| CAACGGTCAAAATTGTGCAT+TGG | - | chr1_3:53652113-53652132 | Msa0125240:CDS | 40.0% | |
| !! | CAGGGGTAATAGTCATTTTC+GGG | - | chr1_3:53652261-53652280 | Msa0125240:intron | 40.0% |
| AACGTCAGATATCACATCAC+TGG | - | chr1_3:53653032-53653051 | Msa0125240:CDS | 40.0% | |
| AGGTCATTCTTTACTAGGGA+TGG | + | chr1_3:53653523-53653542 | None:intergenic | 40.0% | |
| AGGATTTGAAGATGCAAGTG+AGG | - | chr1_3:53653730-53653749 | Msa0125240:intron | 40.0% | |
| GATGCTTTGATCACATCCTT+TGG | + | chr1_3:53653798-53653817 | None:intergenic | 40.0% | |
| AGCTCCATTTGTCATTAGTC+AGG | - | chr1_3:53653922-53653941 | Msa0125240:intron | 40.0% | |
| TCTTTCTTCGGCCAAATTCT+AGG | - | chr1_3:53654021-53654040 | Msa0125240:intron | 40.0% | |
| GAGAGTAACCAAGAATCTGA+AGG | - | chr1_3:53654334-53654353 | Msa0125240:intron | 40.0% | |
| TCTTGTCACCTTCAGATTCT+TGG | + | chr1_3:53654345-53654364 | None:intergenic | 40.0% | |
| !! | GACAAGAGTGTTCTCTACTT+TGG | - | chr1_3:53654358-53654377 | Msa0125240:intron | 40.0% |
| ! | GAGTCCAGTTCTAATGTTCA+TGG | - | chr1_3:53654457-53654476 | Msa0125240:intron | 40.0% |
| AAACCTGCGAGAGTAGAATT+AGG | + | chr1_3:53654550-53654569 | None:intergenic | 40.0% | |
| ATCAATCCAACTATGAGGTG+CGG | - | chr1_3:53654687-53654706 | Msa0125240:intron | 40.0% | |
| TCATGTGTATGACACACGTT+TGG | + | chr1_3:53654733-53654752 | None:intergenic | 40.0% | |
| TTTGCAAGACTCATGCATAC+AGG | + | chr1_3:53654761-53654780 | None:intergenic | 40.0% | |
| ACAAAGTAAGCAGGCATGTA+TGG | + | chr1_3:53654854-53654873 | None:intergenic | 40.0% | |
| GCTCTTACTACAAAGTAAGC+AGG | + | chr1_3:53654863-53654882 | None:intergenic | 40.0% | |
| !!! | ATGGCTTTGGCAGATCATTT+TGG | - | chr1_3:53654909-53654928 | Msa0125240:intron | 40.0% |
| ! | TGTTGAGGCAGATGCTTTTA+AGG | - | chr1_3:53654958-53654977 | Msa0125240:intron | 40.0% |
| CATGCTTCAAACTGCTGAAT+TGG | - | chr1_3:53655030-53655049 | Msa0125240:intron | 40.0% | |
| GACAAAAGGTTCCCATGATA+AGG | + | chr1_3:53655211-53655230 | None:intergenic | 40.0% | |
| GGTAGGATATAAAGTAGCTG+AGG | - | chr1_3:53655284-53655303 | Msa0125240:intron | 40.0% | |
| GGATATAAAGTAGCTGAGGA+TGG | - | chr1_3:53655288-53655307 | Msa0125240:intron | 40.0% | |
| TCTTCTTCTGCTTCATTCAC+TGG | + | chr1_3:53655339-53655358 | None:intergenic | 40.0% | |
| ! | TAGAATTGAGCTAGTTGGTG+TGG | - | chr1_3:53655410-53655429 | Msa0125240:intron | 40.0% |
| AACAGGAGAGCTATTATGAC+AGG | - | chr1_3:53655567-53655586 | Msa0125240:intron | 40.0% | |
| GAGAGCTATTATGACAGGAA+GGG | - | chr1_3:53655572-53655591 | Msa0125240:intron | 40.0% | |
| !!! | GATCCTGTTTTTACCTTTGG+TGG | + | chr1_3:53655711-53655730 | None:intergenic | 40.0% |
| AATCTACTAGAGGATCCTGT+TGG | - | chr1_3:53655851-53655870 | Msa0125240:CDS | 40.0% | |
| AAATCCTTCCAAACAGAACC+AGG | + | chr1_3:53655965-53655984 | None:intergenic | 40.0% | |
| TTCTGAACACTTGACCTTGA+AGG | + | chr1_3:53655998-53656017 | None:intergenic | 40.0% | |
| AAGACAGTAACACTTGGTTC+TGG | + | chr1_3:53656088-53656107 | None:intergenic | 40.0% | |
| CCAATTTACAAGTCTCAGGA+TGG | + | chr1_3:53656241-53656260 | None:intergenic | 40.0% | |
| CCATCCTGAGACTTGTAAAT+TGG | - | chr1_3:53656238-53656257 | Msa0125240:five_prime_UTR | 40.0% | |
| CCTCTAGCACTCAAATCAAG+TGG | + | chr1_3:53650890-53650909 | None:intergenic | 45.0% | |
| ! | CCACTTGATTTGAGTGCTAG+AGG | - | chr1_3:53650887-53650906 | Msa0125240:three_prime_UTR | 45.0% |
| GTCAGCTACAGCTTCTTCTT+TGG | - | chr1_3:53650924-53650943 | Msa0125240:three_prime_UTR | 45.0% | |
| ATCTCCAACAAGATGGAGCA+AGG | - | chr1_3:53650986-53651005 | Msa0125240:three_prime_UTR | 45.0% | |
| ! | CATGTGTGAAGTGCTTGACT+TGG | - | chr1_3:53652136-53652155 | Msa0125240:CDS | 45.0% |
| ! | AAAAATAGCGGGACAGGTAG+CGG | - | chr1_3:53653464-53653483 | Msa0125240:intron | 45.0% |
| TGGGCAAGTATGCATAACTC+TGG | + | chr1_3:53653758-53653777 | None:intergenic | 45.0% | |
| ATTGGCAGCTACAAGGTAAC+TGG | - | chr1_3:53654090-53654109 | Msa0125240:intron | 45.0% | |
| TAAAGAAGTCATGGTCCCCA+TGG | - | chr1_3:53654421-53654440 | Msa0125240:intron | 45.0% | |
| CCACCCATGAACATTAGAAC+TGG | + | chr1_3:53654464-53654483 | None:intergenic | 45.0% | |
| ! | CCAGTTCTAATGTTCATGGG+TGG | - | chr1_3:53654461-53654480 | Msa0125240:intron | 45.0% |
| GTTCTAATGTTCATGGGTGG+TGG | - | chr1_3:53654464-53654483 | Msa0125240:intron | 45.0% | |
| CTGCGAGAGTAGAATTAGGA+TGG | + | chr1_3:53654546-53654565 | None:intergenic | 45.0% | |
| CATCCTAATTCTACTCTCGC+AGG | - | chr1_3:53654544-53654563 | Msa0125240:intron | 45.0% | |
| ACGCACCTCAATTCCATTGT+TGG | - | chr1_3:53654642-53654661 | Msa0125240:intron | 45.0% | |
| CAAGACTCATGCATACAGGA+TGG | + | chr1_3:53654757-53654776 | None:intergenic | 45.0% | |
| TTGGTTAGGAGCAGCTTCAA+AGG | - | chr1_3:53654928-53654947 | Msa0125240:intron | 45.0% | |
| TTCAAAGGCTGTGGTTGTTG+AGG | - | chr1_3:53654943-53654962 | Msa0125240:intron | 45.0% | |
| ATGGTGACCCCTAGAGTTAA+GGG | + | chr1_3:53655005-53655024 | None:intergenic | 45.0% | |
| ! | CAGTTTGAAGCATGTCAGCA+TGG | + | chr1_3:53655024-53655043 | None:intergenic | 45.0% |
| TAGAGATGATGCAGCATCAG+TGG | + | chr1_3:53655142-53655161 | None:intergenic | 45.0% | |
| TGCTGCATCATCTCTACTAG+TGG | - | chr1_3:53655146-53655165 | Msa0125240:intron | 45.0% | |
| TGCATCATCTCTACTAGTGG+CGG | - | chr1_3:53655149-53655168 | Msa0125240:intron | 45.0% | |
| !! | TAGTGGCGGCTCTAAACAAA+GGG | - | chr1_3:53655163-53655182 | Msa0125240:intron | 45.0% |
| CAAAGGGCGAGATGTTATCA+TGG | - | chr1_3:53655179-53655198 | Msa0125240:intron | 45.0% | |
| TCATGGACGGTACCTTATCA+TGG | - | chr1_3:53655196-53655215 | Msa0125240:intron | 45.0% | |
| CATGGACGGTACCTTATCAT+GGG | - | chr1_3:53655197-53655216 | Msa0125240:intron | 45.0% | |
| GCAATAGTCTGCTCGACAAA+AGG | + | chr1_3:53655225-53655244 | None:intergenic | 45.0% | |
| TGTCGAGCAGACTATTGCTA+TGG | - | chr1_3:53655227-53655246 | Msa0125240:intron | 45.0% | |
| CATAAGTACAGAATGGGGGT+AGG | - | chr1_3:53655267-53655286 | Msa0125240:intron | 45.0% | |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | - | chr1_3:53655420-53655439 | Msa0125240:intron | 45.0% |
| GGAGAGCTATTATGACAGGA+AGG | - | chr1_3:53655571-53655590 | Msa0125240:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | - | chr1_3:53655658-53655677 | Msa0125240:intron | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | - | chr1_3:53655681-53655700 | Msa0125240:intron | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | - | chr1_3:53655684-53655703 | Msa0125240:intron | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+AGG | - | chr1_3:53655705-53655724 | Msa0125240:intron | 45.0% | |
| ACAGCTTATTGGATGGAAGG+AGG | - | chr1_3:53655820-53655839 | Msa0125240:intron | 45.0% | |
| CAGCTTATTGGATGGAAGGA+GGG | - | chr1_3:53655821-53655840 | Msa0125240:intron | 45.0% | |
| GGGTGATCACAATCTACTAG+AGG | - | chr1_3:53655841-53655860 | Msa0125240:CDS | 45.0% | |
| !! | CAATGGAACCTGGTTCTGTT+TGG | - | chr1_3:53655954-53655973 | Msa0125240:CDS | 45.0% |
| AAGTCTCAGGATGGTGTGAT+GGG | + | chr1_3:53656232-53656251 | None:intergenic | 45.0% | |
| !!! | ATATTAACAAAATATTTTAA+CGG | - | chr1_3:53652772-53652791 | Msa0125240:CDS | 5.0% |
| !! | AAATAAATATTTAAAAAGTA+AGG | - | chr1_3:53653208-53653227 | Msa0125240:CDS | 5.0% |
| !! | AAAAAATAAAAATGAATAAA+TGG | + | chr1_3:53653956-53653975 | None:intergenic | 5.0% |
| !!! | ACATTTATTTATTTTTAAAT+AGG | - | chr1_3:53654247-53654266 | Msa0125240:intron | 5.0% |
| TTACCGGAAGCAAGAGTCGA+CGG | - | chr1_3:53651178-53651197 | Msa0125240:CDS | 50.0% | |
| GCTTGTGTGTTTGCGTGTGT+TGG | - | chr1_3:53653694-53653713 | Msa0125240:intron | 50.0% | |
| ! | GTGTTGGCAGCTAGGCAAAT+AGG | - | chr1_3:53653710-53653729 | Msa0125240:intron | 50.0% |
| AACTGGACTCCTCTCACTGA+GGG | + | chr1_3:53654447-53654466 | None:intergenic | 50.0% | |
| ! | AATGTTCATGGGTGGTGGCA+TGG | - | chr1_3:53654469-53654488 | Msa0125240:intron | 50.0% |
| ! | ATGTTCATGGGTGGTGGCAT+GGG | - | chr1_3:53654470-53654489 | Msa0125240:intron | 50.0% |
| CATGGTGACCCCTAGAGTTA+AGG | + | chr1_3:53655006-53655025 | None:intergenic | 50.0% | |
| !! | CTAGTGGCGGCTCTAAACAA+AGG | - | chr1_3:53655162-53655181 | Msa0125240:intron | 50.0% |
| GGGCGAGATGTTATCATGGA+CGG | - | chr1_3:53655183-53655202 | Msa0125240:intron | 50.0% | |
| TTATGACAGGAAGGGCAGTG+AGG | - | chr1_3:53655580-53655599 | Msa0125240:intron | 50.0% | |
| TATGACAGGAAGGGCAGTGA+GGG | - | chr1_3:53655581-53655600 | Msa0125240:intron | 50.0% | |
| CAGAACCAGGTTCCATTGCT+GGG | + | chr1_3:53655952-53655971 | None:intergenic | 50.0% | |
| ACAGAACCAGGTTCCATTGC+TGG | + | chr1_3:53655953-53655972 | None:intergenic | 50.0% | |
| !! | GGAACCTGGTTCTGTTTGGA+AGG | - | chr1_3:53655958-53655977 | Msa0125240:CDS | 50.0% |
| CAAGTCTCAGGATGGTGTGA+TGG | + | chr1_3:53656233-53656252 | None:intergenic | 50.0% | |
| CAGAACATGTGTGAGGCGGA+CGG | + | chr1_3:53651114-53651133 | None:intergenic | 55.0% | |
| CAGCCAGAACATGTGTGAGG+CGG | + | chr1_3:53651118-53651137 | None:intergenic | 55.0% | |
| AGGCAGCCAGAACATGTGTG+AGG | + | chr1_3:53651121-53651140 | None:intergenic | 55.0% | |
| GGCAATCAAACCGGCAAAGG+AGG | + | chr1_3:53651141-53651160 | None:intergenic | 55.0% | |
| !! | CTTTGCCGGTTTGATTGCCG+CGG | - | chr1_3:53651142-53651161 | Msa0125240:CDS | 55.0% |
| TGGGGCGTGAGTTCAACTCT+CGG | - | chr1_3:53651626-53651645 | Msa0125240:intron | 55.0% | |
| GTTCAGCGTTCGGGTCAAGT+TGG | - | chr1_3:53652212-53652231 | Msa0125240:intron | 55.0% | |
| ! | GTTTGCGTGTGTTGGCAGCT+AGG | - | chr1_3:53653702-53653721 | Msa0125240:intron | 55.0% |
| GAACTGGACTCCTCTCACTG+AGG | + | chr1_3:53654448-53654467 | None:intergenic | 55.0% | |
| ATCCAACTATGAGGTGCGGC+TGG | - | chr1_3:53654691-53654710 | Msa0125240:intron | 55.0% | |
| AGGAGCAGCTTCAAAGGCTG+TGG | - | chr1_3:53654934-53654953 | Msa0125240:intron | 55.0% | |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | - | chr1_3:53655695-53655714 | Msa0125240:intron | 55.0% |
| CAAGGAACCTAGCCCAGCAA+TGG | - | chr1_3:53655937-53655956 | Msa0125240:CDS | 55.0% | |
| ! | GGTTCTGGCAGCAGCCATAT+TGG | + | chr1_3:53656073-53656092 | None:intergenic | 55.0% |
| CGTCCGCCTCACACATGTTC+TGG | - | chr1_3:53651112-53651131 | Msa0125240:CDS | 60.0% | |
| ! | GTTCTGGCTGCCTCCTTTGC+CGG | - | chr1_3:53651128-53651147 | Msa0125240:CDS | 60.0% |
| CGCGGCAATCAAACCGGCAA+AGG | + | chr1_3:53651144-53651163 | None:intergenic | 60.0% | |
| AGCAGCCGCGGCAATCAAAC+CGG | + | chr1_3:53651150-53651169 | None:intergenic | 60.0% | |
| CTCTTGCTTCCGGTAACGCG+AGG | + | chr1_3:53651174-53651193 | None:intergenic | 60.0% | |
| !! | CCACCGTCGACTCTTGCTTC+CGG | + | chr1_3:53651184-53651203 | None:intergenic | 60.0% |
| TCCTCTCACTGAGGGCCATG+GGG | + | chr1_3:53654439-53654458 | None:intergenic | 60.0% | |
| CTCCTCTCACTGAGGGCCAT+GGG | + | chr1_3:53654440-53654459 | None:intergenic | 60.0% | |
| ACTCCTCTCACTGAGGGCCA+TGG | + | chr1_3:53654441-53654460 | None:intergenic | 60.0% | |
| CTCCAGCCGCACCTCATAGT+TGG | + | chr1_3:53654696-53654715 | None:intergenic | 60.0% | |
| CCAGGTTCCATTGCTGGGCT+AGG | + | chr1_3:53655947-53655966 | None:intergenic | 60.0% | |
| CCTAGCCCAGCAATGGAACC+TGG | - | chr1_3:53655944-53655963 | Msa0125240:CDS | 60.0% | |
| CCGGAAGCAAGAGTCGACGG+TGG | - | chr1_3:53651181-53651200 | Msa0125240:CDS | 65.0% | |
| TCCCCATGGCCCTCAGTGAG+AGG | - | chr1_3:53654435-53654454 | Msa0125240:intron | 65.0% | |
| ! | ATGGGTGGTGGCATGGGAGC+TGG | - | chr1_3:53654476-53654495 | Msa0125240:intron | 65.0% |
| GTAACGCGAGGCAGCAGCCG+CGG | + | chr1_3:53651162-53651181 | None:intergenic | 70.0% | |
| CGGCTGCTGCCTCGCGTTAC+CGG | - | chr1_3:53651162-53651181 | Msa0125240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53650799 | 53656322 | 53650799 | ID=Msa0125240;Name=Msa0125240 |
| chr1_3 | mRNA | 53650799 | 53656322 | 53650799 | ID=Msa0125240-mRNA-1;Parent=Msa0125240;Name=Msa0125240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=199|1|1|1|1|1|9|253|521 |
| chr1_3 | exon | 53650799 | 53651297 | 53650799 | ID=Msa0125240-mRNA-1:exon:16436;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53651405 | 53651549 | 53651405 | ID=Msa0125240-mRNA-1:exon:16435;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53651652 | 53651995 | 53651652 | ID=Msa0125240-mRNA-1:exon:16434;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53652070 | 53652199 | 53652070 | ID=Msa0125240-mRNA-1:exon:16433;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53652590 | 53652802 | 53652590 | ID=Msa0125240-mRNA-1:exon:16432;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53653017 | 53653078 | 53653017 | ID=Msa0125240-mRNA-1:exon:16431;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53653178 | 53653401 | 53653178 | ID=Msa0125240-mRNA-1:exon:16430;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53655834 | 53656025 | 53655834 | ID=Msa0125240-mRNA-1:exon:16429;Parent=Msa0125240-mRNA-1 |
| chr1_3 | exon | 53656114 | 53656322 | 53656114 | ID=Msa0125240-mRNA-1:exon:16428;Parent=Msa0125240-mRNA-1 |
| chr1_3 | five_prime_UTR | 53656124 | 53656322 | 53656124 | ID=Msa0125240-mRNA-1:five_prime_utr;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53656114 | 53656123 | 53656114 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53655834 | 53656025 | 53655834 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53653178 | 53653401 | 53653178 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53653017 | 53653078 | 53653017 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53652590 | 53652802 | 53652590 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53652070 | 53652199 | 53652070 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53651652 | 53651995 | 53651652 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53651405 | 53651549 | 53651405 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | CDS | 53651052 | 53651297 | 53651052 | ID=Msa0125240-mRNA-1:cds;Parent=Msa0125240-mRNA-1 |
| chr1_3 | three_prime_UTR | 53650799 | 53651051 | 53650799 | ID=Msa0125240-mRNA-1:three_prime_utr;Parent=Msa0125240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
