Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030440 | sp|P27061|PPA1_SOLLC | 39.906 | 213 | 125 | 3 | 42 | 252 | 43 | 254 | 2.46e-55 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030440 | Msa0777040 | 0.814820 | 1.268225e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030440 | MtrunA17_Chr1g0186301 | 98.419 | 253 | 4 | 0 | 1 | 253 | 10 | 262 | 0.0 | 518 |
| Msa0030440 | MtrunA17_Chr1g0168451 | 72.549 | 255 | 67 | 2 | 1 | 253 | 13 | 266 | 3.75e-136 | 384 |
| Msa0030440 | MtrunA17_Chr6g0487381 | 39.815 | 216 | 127 | 3 | 40 | 253 | 38 | 252 | 1.53e-54 | 176 |
| Msa0030440 | MtrunA17_Chr8g0356021 | 40.000 | 220 | 127 | 4 | 36 | 253 | 43 | 259 | 1.56e-54 | 176 |
| Msa0030440 | MtrunA17_Chr8g0340031 | 40.741 | 216 | 124 | 3 | 40 | 252 | 35 | 249 | 4.18e-51 | 167 |
| Msa0030440 | MtrunA17_Chr8g0340821 | 39.015 | 264 | 136 | 8 | 10 | 253 | 3 | 261 | 1.28e-50 | 166 |
| Msa0030440 | MtrunA17_Chr8g0340811 | 40.930 | 215 | 122 | 5 | 42 | 253 | 52 | 264 | 3.31e-49 | 162 |
| Msa0030440 | MtrunA17_Chr8g0334461 | 35.747 | 221 | 134 | 5 | 41 | 253 | 67 | 287 | 1.17e-41 | 144 |
| Msa0030440 | MtrunA17_Chr8g0340021 | 43.802 | 121 | 67 | 1 | 133 | 252 | 32 | 152 | 1.15e-28 | 106 |
| Msa0030440 | MtrunA17_Chr3g0113091 | 25.600 | 250 | 174 | 6 | 5 | 246 | 44 | 289 | 4.92e-18 | 81.6 |
| Msa0030440 | MtrunA17_Chr5g0436371 | 25.764 | 229 | 154 | 5 | 29 | 249 | 67 | 287 | 6.03e-18 | 81.3 |
| Msa0030440 | MtrunA17_Chr8g0356651 | 36.220 | 127 | 64 | 4 | 10 | 121 | 3 | 127 | 1.55e-17 | 77.4 |
| Msa0030440 | MtrunA17_Chr7g0265641 | 37.255 | 102 | 63 | 1 | 130 | 230 | 9 | 110 | 5.21e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030440 | AT1G04040.1 | 50.185 | 271 | 117 | 5 | 1 | 253 | 1 | 271 | 1.81e-90 | 268 |
| Msa0030440 | AT5G44020.1 | 49.606 | 254 | 110 | 4 | 18 | 253 | 19 | 272 | 2.12e-85 | 256 |
| Msa0030440 | AT4G25150.1 | 38.976 | 254 | 143 | 5 | 10 | 252 | 7 | 259 | 3.29e-56 | 181 |
| Msa0030440 | AT5G51260.1 | 38.785 | 214 | 128 | 3 | 41 | 252 | 44 | 256 | 1.39e-54 | 176 |
| Msa0030440 | AT2G38600.2 | 40.741 | 216 | 124 | 3 | 40 | 252 | 36 | 250 | 1.43e-53 | 174 |
| Msa0030440 | AT2G38600.1 | 40.741 | 216 | 124 | 3 | 40 | 252 | 36 | 250 | 1.43e-53 | 174 |
| Msa0030440 | AT4G29270.1 | 38.281 | 256 | 151 | 5 | 4 | 253 | 2 | 256 | 3.53e-53 | 173 |
| Msa0030440 | AT4G29260.1 | 38.785 | 214 | 128 | 2 | 41 | 252 | 42 | 254 | 4.30e-53 | 172 |
| Msa0030440 | AT5G24780.1 | 40.179 | 224 | 126 | 7 | 33 | 252 | 49 | 268 | 7.32e-44 | 149 |
| Msa0030440 | AT5G24770.1 | 41.256 | 223 | 123 | 8 | 34 | 252 | 45 | 263 | 1.67e-43 | 148 |
| Msa0030440 | AT5G51260.2 | 37.580 | 157 | 95 | 3 | 41 | 195 | 44 | 199 | 3.22e-37 | 130 |
| Msa0030440 | AT5G24780.2 | 37.725 | 167 | 98 | 5 | 33 | 195 | 49 | 213 | 6.40e-27 | 104 |
| Msa0030440 | AT5G24770.2 | 38.554 | 166 | 96 | 6 | 34 | 195 | 45 | 208 | 1.40e-26 | 102 |
| Msa0030440 | AT2G39920.2 | 24.903 | 257 | 156 | 7 | 5 | 250 | 43 | 273 | 5.36e-14 | 70.5 |
| Msa0030440 | AT2G39920.4 | 24.806 | 258 | 156 | 8 | 5 | 250 | 43 | 274 | 2.48e-12 | 65.9 |
| Msa0030440 | AT2G39920.3 | 24.806 | 258 | 156 | 8 | 5 | 250 | 43 | 274 | 2.48e-12 | 65.9 |
| Msa0030440 | AT2G39920.1 | 24.806 | 258 | 156 | 8 | 5 | 250 | 43 | 274 | 2.48e-12 | 65.9 |
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAGTCTGCAACAGTTAA+AGG | 0.250546 | 1_1:+56811728 | None:intergenic |
| CTAGTAAAGGTTATCGCATT+TGG | 0.263701 | 1_1:-56810922 | Msa0030440:CDS |
| GAGAACATTTGTTTGTAGTT+TGG | 0.292028 | 1_1:-56811771 | Msa0030440:CDS |
| GCAACATAGTACATTGGATT+TGG | 0.308043 | 1_1:+56810833 | None:intergenic |
| TAGTAAAGGTTATCGCATTT+GGG | 0.310269 | 1_1:-56810921 | Msa0030440:CDS |
| GAAAATTAATGTGACAGCTT+TGG | 0.353636 | 1_1:-56811290 | Msa0030440:CDS |
| GATCAATTCAGCAGCATTGC+AGG | 0.367644 | 1_1:-56810887 | Msa0030440:CDS |
| TGAAGAATTATTGTGAAAGT+TGG | 0.375923 | 1_1:-56811664 | Msa0030440:CDS |
| AGCAGCATTGCAGGGAATAC+TGG | 0.387568 | 1_1:-56810878 | Msa0030440:CDS |
| CAGAGATCCTACTAATGAAT+TGG | 0.387904 | 1_1:-56810987 | Msa0030440:CDS |
| ATGTATTCAGTACATTCTTC+AGG | 0.399887 | 1_1:+56811596 | None:intergenic |
| ATCTTTCTTTAGATTGCAGC+TGG | 0.416936 | 1_1:+56811496 | None:intergenic |
| ACTGACACCAATTCATTAGT+AGG | 0.454204 | 1_1:+56810980 | None:intergenic |
| AATTAATGTGACAGCTTTGG+AGG | 0.462685 | 1_1:-56811287 | Msa0030440:CDS |
| CTCAATGAGTAGTCAAGAGC+AGG | 0.471346 | 1_1:+56811241 | None:intergenic |
| TTCCTTTAACTGTTGCAGAC+TGG | 0.473657 | 1_1:-56811730 | Msa0030440:CDS |
| ATGTGACAGCTTTGGAGGAA+TGG | 0.483119 | 1_1:-56811282 | Msa0030440:CDS |
| AGAAAGATGGCAATGATGCT+TGG | 0.484472 | 1_1:-56811481 | Msa0030440:CDS |
| GTCGGTTACCATGGATGGAC+AGG | 0.486849 | 1_1:-56811121 | Msa0030440:CDS |
| TACAAAGTATTCTTGTAGAA+AGG | 0.487401 | 1_1:+56811422 | None:intergenic |
| AAGAACAACTGAAGAATGCT+TGG | 0.488722 | 1_1:-56811531 | Msa0030440:CDS |
| CTTGTCAATGTCGGTTACCA+TGG | 0.532283 | 1_1:-56811130 | Msa0030440:CDS |
| CTGCTCTTGACTACTCATTG+AGG | 0.535078 | 1_1:-56811240 | Msa0030440:CDS |
| AGCTGCAATCTAAAGAAAGA+TGG | 0.543913 | 1_1:-56811494 | Msa0030440:CDS |
| TCAATGTCGGTTACCATGGA+TGG | 0.552946 | 1_1:-56811126 | Msa0030440:CDS |
| TACTAATGAATTGGTGTCAG+TGG | 0.553434 | 1_1:-56810978 | Msa0030440:CDS |
| AAATAAGACCTGTCCATCCA+TGG | 0.563157 | 1_1:+56811113 | None:intergenic |
| TTCAATGAGATTAAATCTAG+AGG | 0.577610 | 1_1:-56811214 | Msa0030440:CDS |
| ATCGATAACCTTGTCAATGT+CGG | 0.598011 | 1_1:-56811139 | Msa0030440:CDS |
| ATCAATTCAGCAGCATTGCA+GGG | 0.602331 | 1_1:-56810886 | Msa0030440:CDS |
| AACTAGGCAACATAGTACAT+TGG | 0.610933 | 1_1:+56810827 | None:intergenic |
| TTTGGAGGAATGGATGAGCA+AGG | 0.618099 | 1_1:-56811272 | Msa0030440:CDS |
| TCAATGAGTAGTCAAGAGCA+GGG | 0.620486 | 1_1:+56811242 | None:intergenic |
| AGTAAAGGTTATCGCATTTG+GGG | 0.626651 | 1_1:-56810920 | Msa0030440:CDS |
| CATGGTAACCGACATTGACA+AGG | 0.639278 | 1_1:+56811131 | None:intergenic |
| TTGGAGGAATGGATGAGCAA+GGG | 0.640975 | 1_1:-56811271 | Msa0030440:CDS |
| TTAAATCAGAAGACACACAA+TGG | 0.653897 | 1_1:-56811701 | Msa0030440:CDS |
| AGCATTGCAGGGAATACTGG+CGG | 0.687448 | 1_1:-56810875 | Msa0030440:CDS |
| CAATGAGTAGTCAAGAGCAG+GGG | 0.699429 | 1_1:+56811243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAATATTTTACTAGTAA+AGG | - | chr1_1:56811670-56811689 | Msa0030440:CDS | 15.0% |
| !!! | AGAAAATATTTTACTAGTAA+AGG | - | chr1_1:56811670-56811689 | Msa0030440:CDS | 15.0% |
| !!! | ATTAAGATCATTTTGATTTC+TGG | - | chr1_1:56811415-56811434 | Msa0030440:intron | 20.0% |
| !!! | TTAAGATCATTTTGATTTCT+GGG | - | chr1_1:56811416-56811435 | Msa0030440:intron | 20.0% |
| !! | AATTAGTTAGATATAAAGAG+AGG | + | chr1_1:56811542-56811561 | None:intergenic | 20.0% |
| !!! | ATTAAGATCATTTTGATTTC+TGG | - | chr1_1:56811415-56811434 | Msa0030440:intron | 20.0% |
| !!! | TTAAGATCATTTTGATTTCT+GGG | - | chr1_1:56811416-56811435 | Msa0030440:intron | 20.0% |
| !! | AATTAGTTAGATATAAAGAG+AGG | + | chr1_1:56811542-56811561 | None:intergenic | 20.0% |
| ! | TGAAGAATTATTGTGAAAGT+TGG | - | chr1_1:56810941-56810960 | Msa0030440:CDS | 25.0% |
| !! | TACAAAGTATTCTTGTAGAA+AGG | + | chr1_1:56811186-56811205 | None:intergenic | 25.0% |
| ! | TTCTACAAGAATACTTTGTA+TGG | - | chr1_1:56811186-56811205 | Msa0030440:CDS | 25.0% |
| !! | AAACGATTAGTTGATTAAGA+TGG | + | chr1_1:56811224-56811243 | None:intergenic | 25.0% |
| ! | TTCAATGAGATTAAATCTAG+AGG | - | chr1_1:56811391-56811410 | Msa0030440:intron | 25.0% |
| ! | GATTTAGTTAAACTGTTATG+AGG | + | chr1_1:56811582-56811601 | None:intergenic | 25.0% |
| ! | TGAAGAATTATTGTGAAAGT+TGG | - | chr1_1:56810941-56810960 | Msa0030440:CDS | 25.0% |
| !! | TACAAAGTATTCTTGTAGAA+AGG | + | chr1_1:56811186-56811205 | None:intergenic | 25.0% |
| ! | TTCTACAAGAATACTTTGTA+TGG | - | chr1_1:56811186-56811205 | Msa0030440:CDS | 25.0% |
| !! | AAACGATTAGTTGATTAAGA+TGG | + | chr1_1:56811224-56811243 | None:intergenic | 25.0% |
| ! | TTCAATGAGATTAAATCTAG+AGG | - | chr1_1:56811391-56811410 | Msa0030440:intron | 25.0% |
| ! | GATTTAGTTAAACTGTTATG+AGG | + | chr1_1:56811582-56811601 | None:intergenic | 25.0% |
| GAGAACATTTGTTTGTAGTT+TGG | - | chr1_1:56810834-56810853 | Msa0030440:CDS | 30.0% | |
| TTAAATCAGAAGACACACAA+TGG | - | chr1_1:56810904-56810923 | Msa0030440:CDS | 30.0% | |
| ATGTATTCAGTACATTCTTC+AGG | + | chr1_1:56811012-56811031 | None:intergenic | 30.0% | |
| ! | ACCCTTTTATTGACAACATA+GGG | - | chr1_1:56811288-56811307 | Msa0030440:CDS | 30.0% |
| GAAAATTAATGTGACAGCTT+TGG | - | chr1_1:56811315-56811334 | Msa0030440:intron | 30.0% | |
| TAAACTGTTATGAGGAACAA+AGG | + | chr1_1:56811574-56811593 | None:intergenic | 30.0% | |
| TAGTAAAGGTTATCGCATTT+GGG | - | chr1_1:56811684-56811703 | Msa0030440:CDS | 30.0% | |
| GAGAACATTTGTTTGTAGTT+TGG | - | chr1_1:56810834-56810853 | Msa0030440:CDS | 30.0% | |
| TTAAATCAGAAGACACACAA+TGG | - | chr1_1:56810904-56810923 | Msa0030440:CDS | 30.0% | |
| ATGTATTCAGTACATTCTTC+AGG | + | chr1_1:56811012-56811031 | None:intergenic | 30.0% | |
| ! | ACCCTTTTATTGACAACATA+GGG | - | chr1_1:56811288-56811307 | Msa0030440:CDS | 30.0% |
| GAAAATTAATGTGACAGCTT+TGG | - | chr1_1:56811315-56811334 | Msa0030440:intron | 30.0% | |
| TAAACTGTTATGAGGAACAA+AGG | + | chr1_1:56811574-56811593 | None:intergenic | 30.0% | |
| TAGTAAAGGTTATCGCATTT+GGG | - | chr1_1:56811684-56811703 | Msa0030440:CDS | 30.0% | |
| AAGAACAACTGAAGAATGCT+TGG | - | chr1_1:56811074-56811093 | Msa0030440:intron | 35.0% | |
| ATCTTTCTTTAGATTGCAGC+TGG | + | chr1_1:56811112-56811131 | None:intergenic | 35.0% | |
| AGCTGCAATCTAAAGAAAGA+TGG | - | chr1_1:56811111-56811130 | Msa0030440:CDS | 35.0% | |
| ! | GACCCTTTTATTGACAACAT+AGG | - | chr1_1:56811287-56811306 | Msa0030440:CDS | 35.0% |
| CCCCTATGTTGTCAATAAAA+GGG | + | chr1_1:56811292-56811311 | None:intergenic | 35.0% | |
| ! | CCCTTTTATTGACAACATAG+GGG | - | chr1_1:56811289-56811308 | Msa0030440:CDS | 35.0% |
| TCCCCTATGTTGTCAATAAA+AGG | + | chr1_1:56811293-56811312 | None:intergenic | 35.0% | |
| ! | AATTAATGTGACAGCTTTGG+AGG | - | chr1_1:56811318-56811337 | Msa0030440:intron | 35.0% |
| !!! | AGATCATTTTGATTTCTGGG+AGG | - | chr1_1:56811419-56811438 | Msa0030440:intron | 35.0% |
| ATCGATAACCTTGTCAATGT+CGG | - | chr1_1:56811466-56811485 | Msa0030440:CDS | 35.0% | |
| GATATAAAGAGAGGAAAAGC+TGG | + | chr1_1:56811533-56811552 | None:intergenic | 35.0% | |
| CAGAGATCCTACTAATGAAT+TGG | - | chr1_1:56811618-56811637 | Msa0030440:CDS | 35.0% | |
| ACTGACACCAATTCATTAGT+AGG | + | chr1_1:56811628-56811647 | None:intergenic | 35.0% | |
| !! | TACTAATGAATTGGTGTCAG+TGG | - | chr1_1:56811627-56811646 | Msa0030440:CDS | 35.0% |
| CTAGTAAAGGTTATCGCATT+TGG | - | chr1_1:56811683-56811702 | Msa0030440:CDS | 35.0% | |
| AGTAAAGGTTATCGCATTTG+GGG | - | chr1_1:56811685-56811704 | Msa0030440:CDS | 35.0% | |
| GCAACATAGTACATTGGATT+TGG | + | chr1_1:56811775-56811794 | None:intergenic | 35.0% | |
| AAGAACAACTGAAGAATGCT+TGG | - | chr1_1:56811074-56811093 | Msa0030440:intron | 35.0% | |
| ATCTTTCTTTAGATTGCAGC+TGG | + | chr1_1:56811112-56811131 | None:intergenic | 35.0% | |
| AGCTGCAATCTAAAGAAAGA+TGG | - | chr1_1:56811111-56811130 | Msa0030440:CDS | 35.0% | |
| ! | GACCCTTTTATTGACAACAT+AGG | - | chr1_1:56811287-56811306 | Msa0030440:CDS | 35.0% |
| CCCCTATGTTGTCAATAAAA+GGG | + | chr1_1:56811292-56811311 | None:intergenic | 35.0% | |
| ! | CCCTTTTATTGACAACATAG+GGG | - | chr1_1:56811289-56811308 | Msa0030440:CDS | 35.0% |
| TCCCCTATGTTGTCAATAAA+AGG | + | chr1_1:56811293-56811312 | None:intergenic | 35.0% | |
| ! | AATTAATGTGACAGCTTTGG+AGG | - | chr1_1:56811318-56811337 | Msa0030440:intron | 35.0% |
| !!! | AGATCATTTTGATTTCTGGG+AGG | - | chr1_1:56811419-56811438 | Msa0030440:intron | 35.0% |
| ATCGATAACCTTGTCAATGT+CGG | - | chr1_1:56811466-56811485 | Msa0030440:CDS | 35.0% | |
| GATATAAAGAGAGGAAAAGC+TGG | + | chr1_1:56811533-56811552 | None:intergenic | 35.0% | |
| CAGAGATCCTACTAATGAAT+TGG | - | chr1_1:56811618-56811637 | Msa0030440:CDS | 35.0% | |
| ACTGACACCAATTCATTAGT+AGG | + | chr1_1:56811628-56811647 | None:intergenic | 35.0% | |
| !! | TACTAATGAATTGGTGTCAG+TGG | - | chr1_1:56811627-56811646 | Msa0030440:CDS | 35.0% |
| CTAGTAAAGGTTATCGCATT+TGG | - | chr1_1:56811683-56811702 | Msa0030440:CDS | 35.0% | |
| AGTAAAGGTTATCGCATTTG+GGG | - | chr1_1:56811685-56811704 | Msa0030440:CDS | 35.0% | |
| GCAACATAGTACATTGGATT+TGG | + | chr1_1:56811775-56811794 | None:intergenic | 35.0% | |
| TTCCTTTAACTGTTGCAGAC+TGG | - | chr1_1:56810875-56810894 | Msa0030440:CDS | 40.0% | |
| TTCCAGTCTGCAACAGTTAA+AGG | + | chr1_1:56810880-56810899 | None:intergenic | 40.0% | |
| AGAAAGATGGCAATGATGCT+TGG | - | chr1_1:56811124-56811143 | Msa0030440:CDS | 40.0% | |
| TCAATGAGTAGTCAAGAGCA+GGG | + | chr1_1:56811366-56811385 | None:intergenic | 40.0% | |
| !!! | TCATTTTGATTTCTGGGAGG+AGG | - | chr1_1:56811422-56811441 | Msa0030440:intron | 40.0% |
| !!! | CATTTTGATTTCTGGGAGGA+GGG | - | chr1_1:56811423-56811442 | Msa0030440:intron | 40.0% |
| AAATAAGACCTGTCCATCCA+TGG | + | chr1_1:56811495-56811514 | None:intergenic | 40.0% | |
| !!! | GATGGACAGGTCTTATTTTG+AGG | - | chr1_1:56811497-56811516 | Msa0030440:CDS | 40.0% |
| CATTAGTAGGATCTCTGCAA+TGG | + | chr1_1:56811615-56811634 | None:intergenic | 40.0% | |
| ! | TATCGCATTTGGGGAGTTTT+AGG | - | chr1_1:56811694-56811713 | Msa0030440:CDS | 40.0% |
| ATCAATTCAGCAGCATTGCA+GGG | - | chr1_1:56811719-56811738 | Msa0030440:CDS | 40.0% | |
| TTCCTTTAACTGTTGCAGAC+TGG | - | chr1_1:56810875-56810894 | Msa0030440:CDS | 40.0% | |
| TTCCAGTCTGCAACAGTTAA+AGG | + | chr1_1:56810880-56810899 | None:intergenic | 40.0% | |
| AGAAAGATGGCAATGATGCT+TGG | - | chr1_1:56811124-56811143 | Msa0030440:CDS | 40.0% | |
| TCAATGAGTAGTCAAGAGCA+GGG | + | chr1_1:56811366-56811385 | None:intergenic | 40.0% | |
| !!! | TCATTTTGATTTCTGGGAGG+AGG | - | chr1_1:56811422-56811441 | Msa0030440:intron | 40.0% |
| !!! | CATTTTGATTTCTGGGAGGA+GGG | - | chr1_1:56811423-56811442 | Msa0030440:intron | 40.0% |
| AAATAAGACCTGTCCATCCA+TGG | + | chr1_1:56811495-56811514 | None:intergenic | 40.0% | |
| !!! | GATGGACAGGTCTTATTTTG+AGG | - | chr1_1:56811497-56811516 | Msa0030440:CDS | 40.0% |
| CATTAGTAGGATCTCTGCAA+TGG | + | chr1_1:56811615-56811634 | None:intergenic | 40.0% | |
| ! | TATCGCATTTGGGGAGTTTT+AGG | - | chr1_1:56811694-56811713 | Msa0030440:CDS | 40.0% |
| ATCAATTCAGCAGCATTGCA+GGG | - | chr1_1:56811719-56811738 | Msa0030440:CDS | 40.0% | |
| !! | ATGTGACAGCTTTGGAGGAA+TGG | - | chr1_1:56811323-56811342 | Msa0030440:intron | 45.0% |
| TTTGGAGGAATGGATGAGCA+AGG | - | chr1_1:56811333-56811352 | Msa0030440:intron | 45.0% | |
| TTGGAGGAATGGATGAGCAA+GGG | - | chr1_1:56811334-56811353 | Msa0030440:intron | 45.0% | |
| CAATGAGTAGTCAAGAGCAG+GGG | + | chr1_1:56811365-56811384 | None:intergenic | 45.0% | |
| CTCAATGAGTAGTCAAGAGC+AGG | + | chr1_1:56811367-56811386 | None:intergenic | 45.0% | |
| CTGCTCTTGACTACTCATTG+AGG | - | chr1_1:56811365-56811384 | Msa0030440:intron | 45.0% | |
| CATGGTAACCGACATTGACA+AGG | + | chr1_1:56811477-56811496 | None:intergenic | 45.0% | |
| ! | CTTGTCAATGTCGGTTACCA+TGG | - | chr1_1:56811475-56811494 | Msa0030440:CDS | 45.0% |
| ! | TCAATGTCGGTTACCATGGA+TGG | - | chr1_1:56811479-56811498 | Msa0030440:CDS | 45.0% |
| AGTAGGATCTCTGCAATGGA+GGG | + | chr1_1:56811611-56811630 | None:intergenic | 45.0% | |
| TAGTAGGATCTCTGCAATGG+AGG | + | chr1_1:56811612-56811631 | None:intergenic | 45.0% | |
| GATCAATTCAGCAGCATTGC+AGG | - | chr1_1:56811718-56811737 | Msa0030440:CDS | 45.0% | |
| !! | ATGTGACAGCTTTGGAGGAA+TGG | - | chr1_1:56811323-56811342 | Msa0030440:intron | 45.0% |
| TTTGGAGGAATGGATGAGCA+AGG | - | chr1_1:56811333-56811352 | Msa0030440:intron | 45.0% | |
| TTGGAGGAATGGATGAGCAA+GGG | - | chr1_1:56811334-56811353 | Msa0030440:intron | 45.0% | |
| CAATGAGTAGTCAAGAGCAG+GGG | + | chr1_1:56811365-56811384 | None:intergenic | 45.0% | |
| CTCAATGAGTAGTCAAGAGC+AGG | + | chr1_1:56811367-56811386 | None:intergenic | 45.0% | |
| CTGCTCTTGACTACTCATTG+AGG | - | chr1_1:56811365-56811384 | Msa0030440:intron | 45.0% | |
| CATGGTAACCGACATTGACA+AGG | + | chr1_1:56811477-56811496 | None:intergenic | 45.0% | |
| ! | CTTGTCAATGTCGGTTACCA+TGG | - | chr1_1:56811475-56811494 | Msa0030440:CDS | 45.0% |
| ! | TCAATGTCGGTTACCATGGA+TGG | - | chr1_1:56811479-56811498 | Msa0030440:CDS | 45.0% |
| AGTAGGATCTCTGCAATGGA+GGG | + | chr1_1:56811611-56811630 | None:intergenic | 45.0% | |
| TAGTAGGATCTCTGCAATGG+AGG | + | chr1_1:56811612-56811631 | None:intergenic | 45.0% | |
| GATCAATTCAGCAGCATTGC+AGG | - | chr1_1:56811718-56811737 | Msa0030440:CDS | 45.0% | |
| ATCTCTGCAATGGAGGGAGA+GGG | + | chr1_1:56811605-56811624 | None:intergenic | 50.0% | |
| AGCAGCATTGCAGGGAATAC+TGG | - | chr1_1:56811727-56811746 | Msa0030440:CDS | 50.0% | |
| AGCATTGCAGGGAATACTGG+CGG | - | chr1_1:56811730-56811749 | Msa0030440:CDS | 50.0% | |
| ATCTCTGCAATGGAGGGAGA+GGG | + | chr1_1:56811605-56811624 | None:intergenic | 50.0% | |
| AGCAGCATTGCAGGGAATAC+TGG | - | chr1_1:56811727-56811746 | Msa0030440:CDS | 50.0% | |
| AGCATTGCAGGGAATACTGG+CGG | - | chr1_1:56811730-56811749 | Msa0030440:CDS | 50.0% | |
| GTCGGTTACCATGGATGGAC+AGG | - | chr1_1:56811484-56811503 | Msa0030440:CDS | 55.0% | |
| TCTCTGCAATGGAGGGAGAG+GGG | + | chr1_1:56811604-56811623 | None:intergenic | 55.0% | |
| GATCTCTGCAATGGAGGGAG+AGG | + | chr1_1:56811606-56811625 | None:intergenic | 55.0% | |
| GTCGGTTACCATGGATGGAC+AGG | - | chr1_1:56811484-56811503 | Msa0030440:CDS | 55.0% | |
| TCTCTGCAATGGAGGGAGAG+GGG | + | chr1_1:56811604-56811623 | None:intergenic | 55.0% | |
| GATCTCTGCAATGGAGGGAG+AGG | + | chr1_1:56811606-56811625 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56810829 | 56811798 | 56810829 | ID=Msa0030440;Name=Msa0030440 |
| chr1_1 | mRNA | 56810829 | 56811798 | 56810829 | ID=Msa0030440-mRNA-1;Parent=Msa0030440;Name=Msa0030440-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|253 |
| chr1_1 | exon | 56811425 | 56811798 | 56811425 | ID=Msa0030440-mRNA-1:exon:17074;Parent=Msa0030440-mRNA-1 |
| chr1_1 | exon | 56811109 | 56811318 | 56811109 | ID=Msa0030440-mRNA-1:exon:17073;Parent=Msa0030440-mRNA-1 |
| chr1_1 | exon | 56810829 | 56811006 | 56810829 | ID=Msa0030440-mRNA-1:exon:17072;Parent=Msa0030440-mRNA-1 |
| chr1_1 | CDS | 56811425 | 56811798 | 56811425 | ID=Msa0030440-mRNA-1:cds;Parent=Msa0030440-mRNA-1 |
| chr1_1 | CDS | 56811109 | 56811318 | 56811109 | ID=Msa0030440-mRNA-1:cds;Parent=Msa0030440-mRNA-1 |
| chr1_1 | CDS | 56810829 | 56811006 | 56810829 | ID=Msa0030440-mRNA-1:cds;Parent=Msa0030440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
