Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777040 | sp|B0ZB57|OMT3_HUMLU | 59.889 | 359 | 138 | 3 | 6 | 359 | 19 | 376 | 1.68e-161 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777040 | G7KFK0 | 96.970 | 363 | 11 | 0 | 1 | 363 | 1 | 363 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030440 | Msa0777040 | 0.814820 | 1.268225e-51 | -8.615850e-47 |
| Msa0735070 | Msa0777040 | 0.918950 | 8.269656e-87 | -8.615850e-47 |
| Msa0777040 | Msa0814140 | 0.879548 | 1.138976e-69 | -8.615850e-47 |
| Msa0777040 | Msa1150150 | 0.801310 | 9.561933e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777040 | MtrunA17_Chr5g0432301 | 96.970 | 363 | 11 | 0 | 1 | 363 | 1 | 363 | 0.0 | 734 |
| Msa0777040 | MtrunA17_Chr5g0432251 | 85.515 | 359 | 51 | 1 | 1 | 359 | 1 | 358 | 0.0 | 638 |
| Msa0777040 | MtrunA17_Chr5g0432241 | 83.565 | 359 | 59 | 0 | 1 | 359 | 1 | 359 | 0.0 | 626 |
| Msa0777040 | MtrunA17_Chr5g0432211 | 75.487 | 359 | 73 | 2 | 1 | 359 | 1 | 344 | 0.0 | 546 |
| Msa0777040 | MtrunA17_Chr5g0432261 | 71.588 | 359 | 69 | 3 | 1 | 359 | 1 | 326 | 0.0 | 519 |
| Msa0777040 | MtrunA17_Chr4g0040621 | 61.389 | 360 | 132 | 4 | 1 | 359 | 15 | 368 | 2.90e-160 | 453 |
| Msa0777040 | MtrunA17_Chr4g0014681 | 51.233 | 365 | 169 | 6 | 1 | 359 | 1 | 362 | 9.90e-119 | 348 |
| Msa0777040 | MtrunA17_Chr4g0014561 | 50.685 | 365 | 171 | 6 | 1 | 359 | 1 | 362 | 5.27e-117 | 343 |
| Msa0777040 | MtrunA17_Chr4g0046361 | 46.875 | 352 | 181 | 5 | 12 | 359 | 11 | 360 | 3.30e-113 | 333 |
| Msa0777040 | MtrunA17_Chr4g0014641 | 49.036 | 363 | 174 | 6 | 3 | 359 | 5 | 362 | 1.11e-111 | 330 |
| Msa0777040 | MtrunA17_Chr1g0188391 | 45.879 | 364 | 188 | 7 | 1 | 359 | 1 | 360 | 9.24e-111 | 327 |
| Msa0777040 | MtrunA17_Chr7g0223231 | 44.167 | 360 | 191 | 5 | 1 | 360 | 1 | 350 | 1.06e-107 | 319 |
| Msa0777040 | MtrunA17_Chr7g0223241 | 44.167 | 360 | 191 | 5 | 1 | 360 | 1 | 350 | 1.58e-106 | 316 |
| Msa0777040 | MtrunA17_Chr7g0219141 | 44.875 | 361 | 187 | 6 | 3 | 359 | 4 | 356 | 1.67e-106 | 317 |
| Msa0777040 | MtrunA17_Chr4g0046341 | 46.703 | 364 | 183 | 6 | 3 | 359 | 4 | 363 | 6.00e-106 | 315 |
| Msa0777040 | MtrunA17_Chr7g0219161 | 45.245 | 347 | 184 | 5 | 3 | 348 | 4 | 345 | 2.44e-104 | 311 |
| Msa0777040 | MtrunA17_Chr4g0046531 | 44.699 | 349 | 188 | 4 | 12 | 359 | 11 | 355 | 1.04e-97 | 305 |
| Msa0777040 | MtrunA17_Chr4g0046531 | 43.553 | 349 | 192 | 4 | 12 | 359 | 373 | 717 | 5.41e-95 | 298 |
| Msa0777040 | MtrunA17_Chr4g0014661 | 46.724 | 351 | 179 | 5 | 12 | 359 | 11 | 356 | 8.15e-97 | 291 |
| Msa0777040 | MtrunA17_Chr1g0188371 | 43.440 | 343 | 188 | 5 | 1 | 340 | 1 | 340 | 6.06e-93 | 283 |
| Msa0777040 | MtrunA17_Chr4g0014591 | 44.444 | 351 | 187 | 5 | 12 | 359 | 11 | 356 | 1.66e-90 | 275 |
| Msa0777040 | MtrunA17_Chr3g0121301 | 40.059 | 337 | 195 | 4 | 21 | 356 | 27 | 357 | 8.30e-82 | 253 |
| Msa0777040 | MtrunA17_Chr4g0021981 | 38.968 | 349 | 203 | 6 | 15 | 359 | 25 | 367 | 2.98e-79 | 247 |
| Msa0777040 | MtrunA17_Chr4g0022021 | 39.255 | 349 | 202 | 7 | 15 | 359 | 25 | 367 | 7.31e-75 | 236 |
| Msa0777040 | MtrunA17_Chr4g0014601 | 41.732 | 254 | 141 | 4 | 12 | 262 | 11 | 260 | 5.60e-65 | 207 |
| Msa0777040 | MtrunA17_Chr7g0276411 | 32.515 | 326 | 201 | 10 | 31 | 345 | 30 | 347 | 3.25e-52 | 177 |
| Msa0777040 | MtrunA17_Chr7g0276401 | 33.438 | 320 | 201 | 8 | 32 | 345 | 47 | 360 | 3.23e-50 | 172 |
| Msa0777040 | MtrunA17_Chr3g0128011 | 31.677 | 322 | 207 | 9 | 32 | 346 | 88 | 403 | 1.54e-49 | 171 |
| Msa0777040 | MtrunA17_Chr8g0345851 | 36.704 | 267 | 161 | 6 | 95 | 359 | 29 | 289 | 6.72e-49 | 166 |
| Msa0777040 | MtrunA17_Chr8g0367441 | 36.066 | 244 | 150 | 4 | 99 | 341 | 120 | 358 | 1.19e-48 | 168 |
| Msa0777040 | MtrunA17_Chr8g0367501 | 31.642 | 335 | 214 | 9 | 20 | 345 | 20 | 348 | 1.05e-47 | 166 |
| Msa0777040 | MtrunA17_Chr8g0367491 | 30.124 | 322 | 212 | 6 | 32 | 345 | 45 | 361 | 1.37e-46 | 162 |
| Msa0777040 | MtrunA17_Chr5g0448091 | 31.077 | 325 | 208 | 10 | 32 | 347 | 33 | 350 | 6.72e-46 | 160 |
| Msa0777040 | MtrunA17_Chr7g0219171 | 54.887 | 133 | 58 | 2 | 227 | 359 | 117 | 247 | 1.20e-44 | 154 |
| Msa0777040 | MtrunA17_Chr7g0219171 | 44.954 | 109 | 56 | 1 | 12 | 120 | 11 | 115 | 1.57e-21 | 92.4 |
| Msa0777040 | MtrunA17_Chr7g0218261 | 30.117 | 342 | 223 | 9 | 27 | 359 | 33 | 367 | 1.22e-44 | 157 |
| Msa0777040 | MtrunA17_Chr8g0367451 | 31.447 | 318 | 205 | 7 | 32 | 341 | 45 | 357 | 2.70e-44 | 156 |
| Msa0777040 | MtrunA17_Chr1g0200491 | 29.217 | 332 | 217 | 8 | 27 | 347 | 34 | 358 | 1.44e-43 | 154 |
| Msa0777040 | MtrunA17_Chr2g0307521 | 30.088 | 339 | 213 | 10 | 34 | 359 | 35 | 362 | 1.44e-43 | 154 |
| Msa0777040 | MtrunA17_Chr7g0218301 | 29.513 | 349 | 222 | 9 | 27 | 359 | 34 | 374 | 2.70e-43 | 154 |
| Msa0777040 | MtrunA17_Chr7g0218271 | 29.885 | 348 | 222 | 11 | 27 | 359 | 34 | 374 | 6.42e-43 | 153 |
| Msa0777040 | MtrunA17_Chr7g0218131 | 29.032 | 341 | 229 | 8 | 27 | 359 | 34 | 369 | 2.60e-41 | 148 |
| Msa0777040 | MtrunA17_Chr7g0218181 | 28.446 | 341 | 228 | 9 | 27 | 359 | 34 | 366 | 3.71e-41 | 148 |
| Msa0777040 | MtrunA17_Chr1g0163601 | 29.101 | 378 | 240 | 10 | 1 | 359 | 1 | 369 | 7.15e-41 | 147 |
| Msa0777040 | MtrunA17_Chr1g0163611 | 35.814 | 215 | 131 | 4 | 147 | 359 | 160 | 369 | 1.20e-39 | 144 |
| Msa0777040 | MtrunA17_Chr3g0085201 | 29.261 | 352 | 233 | 9 | 1 | 346 | 1 | 342 | 3.61e-39 | 142 |
| Msa0777040 | MtrunA17_Chr7g0218211 | 28.152 | 341 | 232 | 8 | 27 | 359 | 33 | 368 | 8.16e-39 | 142 |
| Msa0777040 | MtrunA17_Chr8g0367381 | 38.919 | 185 | 103 | 5 | 147 | 328 | 149 | 326 | 7.87e-38 | 138 |
| Msa0777040 | MtrunA17_Chr1g0163621 | 29.191 | 346 | 227 | 9 | 26 | 359 | 44 | 383 | 1.04e-37 | 139 |
| Msa0777040 | MtrunA17_Chr3g0085211 | 29.969 | 327 | 213 | 8 | 29 | 347 | 38 | 356 | 9.89e-37 | 136 |
| Msa0777040 | MtrunA17_Chr2g0314271 | 30.841 | 321 | 207 | 8 | 32 | 345 | 27 | 339 | 2.74e-36 | 134 |
| Msa0777040 | MtrunA17_Chr3g0130061 | 27.794 | 349 | 234 | 10 | 8 | 345 | 2 | 343 | 1.95e-32 | 124 |
| Msa0777040 | MtrunA17_Chr3g0130011 | 27.747 | 364 | 243 | 12 | 8 | 359 | 2 | 357 | 1.49e-30 | 119 |
| Msa0777040 | MtrunA17_Chr6g0482291 | 34.483 | 174 | 100 | 5 | 173 | 345 | 1 | 161 | 1.03e-23 | 96.7 |
| Msa0777040 | MtrunA17_Chr8g0367401 | 39.091 | 110 | 66 | 1 | 150 | 259 | 2 | 110 | 9.37e-22 | 90.1 |
| Msa0777040 | MtrunA17_Chr4g0014611 | 59.000 | 100 | 40 | 1 | 260 | 359 | 8 | 106 | 3.00e-21 | 87.8 |
| Msa0777040 | MtrunA17_Chr8g0367461 | 43.878 | 98 | 50 | 3 | 246 | 342 | 1 | 94 | 4.77e-19 | 81.6 |
| Msa0777040 | MtrunA17_Chr4g0014671 | 58.095 | 105 | 43 | 1 | 255 | 359 | 30 | 133 | 5.74e-17 | 76.6 |
| Msa0777040 | MtrunA17_Chr4g0011691 | 45.361 | 97 | 48 | 3 | 261 | 356 | 140 | 232 | 6.64e-17 | 79.3 |
| Msa0777040 | MtrunA17_Chr8g0367391 | 37.383 | 107 | 61 | 3 | 237 | 341 | 13 | 115 | 4.42e-15 | 71.6 |
| Msa0777040 | MtrunA17_Chr8g0367421 | 32.727 | 110 | 56 | 2 | 150 | 259 | 2 | 93 | 8.16e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777040 | AT4G35160.1 | 35.753 | 372 | 216 | 10 | 4 | 359 | 16 | 380 | 8.75e-66 | 213 |
| Msa0777040 | AT4G35150.1 | 33.425 | 365 | 191 | 9 | 4 | 359 | 2 | 323 | 1.68e-61 | 200 |
| Msa0777040 | AT5G54160.1 | 32.812 | 320 | 204 | 8 | 32 | 346 | 34 | 347 | 2.28e-52 | 177 |
| Msa0777040 | AT1G51990.2 | 32.523 | 329 | 203 | 8 | 44 | 359 | 39 | 361 | 3.87e-48 | 167 |
| Msa0777040 | AT1G51990.1 | 32.523 | 329 | 203 | 8 | 44 | 359 | 39 | 361 | 7.21e-48 | 166 |
| Msa0777040 | AT1G77520.1 | 30.343 | 379 | 225 | 11 | 2 | 359 | 20 | 380 | 1.18e-43 | 155 |
| Msa0777040 | AT1G33030.1 | 32.622 | 328 | 196 | 12 | 32 | 346 | 21 | 336 | 3.12e-40 | 145 |
| Msa0777040 | AT1G63140.2 | 32.172 | 373 | 226 | 12 | 2 | 359 | 20 | 380 | 2.87e-39 | 144 |
| Msa0777040 | AT1G63140.4 | 32.172 | 373 | 226 | 12 | 2 | 359 | 40 | 400 | 5.01e-39 | 143 |
| Msa0777040 | AT3G53140.1 | 31.077 | 325 | 206 | 9 | 32 | 345 | 27 | 344 | 7.09e-39 | 142 |
| Msa0777040 | AT1G77530.1 | 31.635 | 373 | 228 | 12 | 2 | 359 | 20 | 380 | 2.88e-38 | 141 |
| Msa0777040 | AT5G53810.1 | 31.232 | 349 | 208 | 11 | 32 | 359 | 40 | 377 | 3.71e-37 | 138 |
| Msa0777040 | AT1G21130.1 | 31.024 | 332 | 198 | 13 | 32 | 345 | 40 | 358 | 5.99e-35 | 132 |
| Msa0777040 | AT1G21110.1 | 30.091 | 329 | 199 | 13 | 32 | 342 | 40 | 355 | 6.11e-33 | 126 |
| Msa0777040 | AT1G21100.1 | 29.129 | 333 | 205 | 11 | 32 | 346 | 40 | 359 | 7.73e-33 | 126 |
| Msa0777040 | AT1G21120.1 | 30.030 | 333 | 202 | 13 | 32 | 346 | 40 | 359 | 1.44e-32 | 125 |
| Msa0777040 | AT1G21120.2 | 30.030 | 333 | 202 | 13 | 32 | 346 | 88 | 407 | 3.18e-32 | 125 |
| Msa0777040 | AT1G62900.1 | 38.462 | 208 | 123 | 3 | 153 | 359 | 1 | 204 | 3.98e-32 | 120 |
| Msa0777040 | AT5G37170.2 | 34.272 | 213 | 128 | 7 | 151 | 359 | 29 | 233 | 7.22e-32 | 120 |
| Msa0777040 | AT5G37170.1 | 34.272 | 213 | 128 | 7 | 151 | 359 | 129 | 333 | 1.44e-31 | 122 |
| Msa0777040 | AT1G76790.1 | 28.440 | 327 | 207 | 7 | 32 | 341 | 30 | 346 | 1.07e-30 | 120 |
| Msa0777040 | AT5G37170.3 | 35.079 | 191 | 114 | 6 | 173 | 359 | 1 | 185 | 5.76e-28 | 108 |
| Msa0777040 | AT1G63140.1 | 28.676 | 272 | 171 | 9 | 2 | 259 | 40 | 302 | 1.15e-17 | 83.2 |
| Msa0777040 | AT1G33030.2 | 28.870 | 239 | 152 | 8 | 32 | 259 | 21 | 252 | 4.49e-17 | 80.5 |
| Msa0777040 | AT1G33030.3 | 28.870 | 239 | 152 | 8 | 32 | 259 | 21 | 252 | 6.68e-17 | 80.5 |
| Msa0777040 | AT1G21130.2 | 26.749 | 243 | 155 | 9 | 32 | 259 | 40 | 274 | 2.32e-12 | 67.4 |
Find 69 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATTCTCTTGATTATTT+TGG | 0.038368 | 5_2:-55753958 | None:intergenic |
| TCAATTAGTTTCCAATTTAT+TGG | 0.157383 | 5_2:+55754480 | Msa0777040:CDS |
| GTTAACATATACTCAATTTC+TGG | 0.174426 | 5_2:-55754232 | None:intergenic |
| GCACTTCTCAACCAATAAAT+TGG | 0.202449 | 5_2:-55754491 | None:intergenic |
| CAATTTAACCCATTCTTTCT+TGG | 0.222335 | 5_2:-55755834 | None:intergenic |
| ACAGCTCTTAACCCTAAAAT+TGG | 0.269525 | 5_2:-55755893 | None:intergenic |
| CGACACACGGGATGTTGTTA+TGG | 0.290673 | 5_2:+55754395 | Msa0777040:CDS |
| CCATGGTTGTGTATGATATC+TGG | 0.301298 | 5_2:-55754076 | None:intergenic |
| GATCTCCCACATGTTGTTGA+TGG | 0.305202 | 5_2:+55754622 | Msa0777040:CDS |
| TGCAAAATCATTCCCACAAA+TGG | 0.347819 | 5_2:+55754585 | Msa0777040:CDS |
| TGCCACGGATTCATCATAAC+TGG | 0.358498 | 5_2:-55754325 | None:intergenic |
| GTTGATGTTGGAGGAGGAAC+AGG | 0.362777 | 5_2:+55754544 | Msa0777040:CDS |
| TGCATCTAGATTATTACTTA+AGG | 0.368848 | 5_2:+55754258 | Msa0777040:CDS |
| GTTCAATGAATTTGAGTCAT+TGG | 0.391032 | 5_2:+55754522 | Msa0777040:CDS |
| CAATTTATTTAATGAGTCAA+TGG | 0.392635 | 5_2:+55754447 | Msa0777040:CDS |
| GCTTTGAGCCTTGAGCAAAT+TGG | 0.420837 | 5_2:-55753984 | None:intergenic |
| AACAAAATTGCATCTGTTGG+CGG | 0.431252 | 5_2:-55754700 | None:intergenic |
| AAGAGAGAACCAAGAAAGAA+TGG | 0.431260 | 5_2:+55755825 | Msa0777040:CDS |
| TGGAGGAGGAACAGGGACTA+TGG | 0.434351 | 5_2:+55754552 | Msa0777040:CDS |
| AGAAATTGAGTATATGTTAA+CGG | 0.434868 | 5_2:+55754234 | Msa0777040:CDS |
| GACACACGGGATGTTGTTAT+GGG | 0.439136 | 5_2:+55754396 | Msa0777040:CDS |
| ACGAATGGTGTCACACTCAT+TGG | 0.441378 | 5_2:-55754286 | None:intergenic |
| CTTCTTTGATATGTTGATGA+TGG | 0.447651 | 5_2:+55755787 | Msa0777040:CDS |
| CTTAAATGTGTAGTTGACTT+AGG | 0.449531 | 5_2:+55754049 | Msa0777040:CDS |
| AGTGAGAAGCTAAGATATGT+TGG | 0.452323 | 5_2:+55754655 | Msa0777040:CDS |
| AACACAATGCACTCCATTTG+TGG | 0.453290 | 5_2:-55754598 | None:intergenic |
| TTTGAGTCATTGGTTGATGT+TGG | 0.460976 | 5_2:+55754532 | Msa0777040:CDS |
| AAAGAAAGGTAAAGAAGGAA+AGG | 0.487837 | 5_2:+55755697 | Msa0777040:CDS |
| TTCAACAAAATTGCATCTGT+TGG | 0.490404 | 5_2:-55754703 | None:intergenic |
| ATGGTGTTAGATTGTGAGAA+GGG | 0.493895 | 5_2:+55755734 | Msa0777040:CDS |
| TATCTTGTAGTCACTAAAAC+CGG | 0.495764 | 5_2:-55755867 | None:intergenic |
| GAAGATATTAAAGAATTGTA+AGG | 0.505831 | 5_2:+55755664 | Msa0777040:CDS |
| TTGATGATGGTAACACTCAC+TGG | 0.510994 | 5_2:+55755800 | Msa0777040:CDS |
| ACACAATGCACTCCATTTGT+GGG | 0.515239 | 5_2:-55754597 | None:intergenic |
| TGTAGTGGATATTGCATGAC+TGG | 0.519677 | 5_2:+55755624 | Msa0777040:intron |
| CATGGTGTTAGATTGTGAGA+AGG | 0.520696 | 5_2:+55755733 | Msa0777040:CDS |
| AGAGAGAACCAAGAAAGAAT+GGG | 0.522205 | 5_2:+55755826 | Msa0777040:CDS |
| CATGTTGTTGATGGCTTGCA+AGG | 0.523711 | 5_2:+55754631 | Msa0777040:CDS |
| TGTTGCTTCCAATTTGCTCA+AGG | 0.535107 | 5_2:+55753976 | Msa0777040:CDS |
| GAAGGGAGACAATAATGAAT+CGG | 0.547439 | 5_2:+55755751 | Msa0777040:CDS |
| ATAGCAAAGAAAGGTAAAGA+AGG | 0.550930 | 5_2:+55755692 | Msa0777040:CDS |
| GAGTCATTGGTTGATGTTGG+AGG | 0.554899 | 5_2:+55754535 | Msa0777040:CDS |
| CGTGGCATCAATTCTCTATG+TGG | 0.558108 | 5_2:+55754341 | Msa0777040:CDS |
| CGCATCAAGCGATAGATGCA+AGG | 0.562811 | 5_2:-55754157 | None:intergenic |
| TGCAAGCCATCAACAACATG+TGG | 0.566861 | 5_2:-55754628 | None:intergenic |
| AGAAGCTAAGATATGTTGGT+GGG | 0.573478 | 5_2:+55754659 | Msa0777040:CDS |
| TCGAGCATCGCGTACACGAA+TGG | 0.574656 | 5_2:-55754301 | None:intergenic |
| ATGCGAATCATGACTCACTC+TGG | 0.576549 | 5_2:+55754175 | Msa0777040:CDS |
| AAGGATGCAATAGCAAAGAA+AGG | 0.578531 | 5_2:+55755683 | Msa0777040:CDS |
| GTAGTCACTAAAACCGGCCG+AGG | 0.580559 | 5_2:-55755861 | None:intergenic |
| GTTAAATTGATATCCTCGGC+CGG | 0.582802 | 5_2:+55755848 | Msa0777040:CDS |
| ATGGGTTAAATTGATATCCT+CGG | 0.589713 | 5_2:+55755844 | Msa0777040:CDS |
| TTTATTGGTTGAGAAGTGCA+AGG | 0.591471 | 5_2:+55754495 | Msa0777040:CDS |
| TTATTGGTTGAGAAGTGCAA+GGG | 0.594326 | 5_2:+55754496 | Msa0777040:CDS |
| TCAAGGCTCAAAGCCACGTA+TGG | 0.597244 | 5_2:+55753993 | Msa0777040:CDS |
| CACATAGAGAATTGATGCCA+CGG | 0.606841 | 5_2:-55754340 | None:intergenic |
| GCCACGGATTCATCATAACT+GGG | 0.617476 | 5_2:-55754324 | None:intergenic |
| GAGAAGCTAAGATATGTTGG+TGG | 0.617907 | 5_2:+55754658 | Msa0777040:CDS |
| ACATCATTTGAAACGACACA+CGG | 0.621968 | 5_2:+55754382 | Msa0777040:CDS |
| TGAAAATGTGATTCCATACG+TGG | 0.623179 | 5_2:-55754006 | None:intergenic |
| TCATTGGTTGATGTTGGAGG+AGG | 0.629765 | 5_2:+55754538 | Msa0777040:CDS |
| CTTCTCTCAACAAAATGTTG+CGG | 0.629768 | 5_2:+55754201 | Msa0777040:CDS |
| CCAGATATCATACACAACCA+TGG | 0.643900 | 5_2:+55754076 | Msa0777040:CDS |
| GAAGCTAAGATATGTTGGTG+GGG | 0.652324 | 5_2:+55754660 | Msa0777040:CDS |
| TTGATGTTGGAGGAGGAACA+GGG | 0.660754 | 5_2:+55754545 | Msa0777040:CDS |
| ACCCAGTTATGATGAATCCG+TGG | 0.665584 | 5_2:+55754323 | Msa0777040:CDS |
| CATCATTTGAAACGACACAC+GGG | 0.671406 | 5_2:+55754383 | Msa0777040:CDS |
| GCAAGCCATCAACAACATGT+GGG | 0.673393 | 5_2:-55754627 | None:intergenic |
| AAAGGTAGTTATCATAGACA+TGG | 0.689933 | 5_2:+55755715 | Msa0777040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_2:55754869-55754888 | Msa0777040:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_2:55754870-55754889 | Msa0777040:intron | 10.0% |
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_2:55754869-55754888 | Msa0777040:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_2:55754870-55754889 | Msa0777040:intron | 10.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_2:55754871-55754890 | Msa0777040:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_2:55755182-55755201 | Msa0777040:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_2:55755389-55755408 | None:intergenic | 15.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_2:55754871-55754890 | Msa0777040:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_2:55755182-55755201 | Msa0777040:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_2:55755389-55755408 | None:intergenic | 15.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_2:55753960-55753979 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_2:55754234-55754253 | Msa0777040:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_2:55754447-55754466 | Msa0777040:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_2:55754480-55754499 | Msa0777040:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_2:55754858-55754877 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_2:55754918-55754937 | Msa0777040:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_2:55754949-55754968 | Msa0777040:intron | 20.0% |
| !! | ACTTCTTACATAAAAAATGT+TGG | - | chr5_2:55755037-55755056 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_2:55755493-55755512 | Msa0777040:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_2:55755532-55755551 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_2:55755533-55755552 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_2:55755545-55755564 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_2:55755664-55755683 | Msa0777040:CDS | 20.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_2:55753960-55753979 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_2:55754234-55754253 | Msa0777040:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_2:55754447-55754466 | Msa0777040:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_2:55754480-55754499 | Msa0777040:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_2:55754858-55754877 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_2:55754918-55754937 | Msa0777040:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_2:55754949-55754968 | Msa0777040:intron | 20.0% |
| !! | ACTTCTTACATAAAAAATGT+TGG | - | chr5_2:55755037-55755056 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_2:55755493-55755512 | Msa0777040:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_2:55755532-55755551 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_2:55755533-55755552 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_2:55755545-55755564 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_2:55755664-55755683 | Msa0777040:CDS | 20.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_2:55753961-55753980 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_2:55754235-55754254 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_2:55754258-55754277 | Msa0777040:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_2:55754752-55754771 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_2:55754757-55754776 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_2:55754975-55754994 | Msa0777040:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_2:55755131-55755150 | Msa0777040:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_2:55755132-55755151 | Msa0777040:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_2:55755467-55755486 | Msa0777040:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_2:55755468-55755487 | Msa0777040:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_2:55755609-55755628 | Msa0777040:intron | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_2:55755881-55755900 | Msa0777040:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_2:55755882-55755901 | Msa0777040:CDS | 25.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_2:55753961-55753980 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_2:55754235-55754254 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_2:55754258-55754277 | Msa0777040:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_2:55754752-55754771 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_2:55754757-55754776 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_2:55754975-55754994 | Msa0777040:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_2:55755131-55755150 | Msa0777040:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_2:55755132-55755151 | Msa0777040:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_2:55755467-55755486 | Msa0777040:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_2:55755468-55755487 | Msa0777040:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_2:55755609-55755628 | Msa0777040:intron | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_2:55755881-55755900 | Msa0777040:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_2:55755882-55755901 | Msa0777040:CDS | 25.0% |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_2:55754049-55754068 | Msa0777040:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_2:55754522-55754541 | Msa0777040:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_2:55754706-55754725 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_2:55754705-55754724 | Msa0777040:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_2:55755074-55755093 | Msa0777040:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_2:55755130-55755149 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_2:55755379-55755398 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_2:55755506-55755525 | Msa0777040:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_2:55755692-55755711 | Msa0777040:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_2:55755697-55755716 | Msa0777040:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_2:55755715-55755734 | Msa0777040:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_2:55755787-55755806 | Msa0777040:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_2:55755837-55755856 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_2:55755844-55755863 | Msa0777040:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_2:55755870-55755889 | None:intergenic | 30.0% | |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_2:55754049-55754068 | Msa0777040:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_2:55754522-55754541 | Msa0777040:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_2:55754706-55754725 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_2:55754705-55754724 | Msa0777040:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_2:55755074-55755093 | Msa0777040:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_2:55755130-55755149 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_2:55755379-55755398 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_2:55755506-55755525 | Msa0777040:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_2:55755692-55755711 | Msa0777040:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_2:55755697-55755716 | Msa0777040:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_2:55755715-55755734 | Msa0777040:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_2:55755787-55755806 | Msa0777040:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_2:55755837-55755856 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_2:55755844-55755863 | Msa0777040:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_2:55755870-55755889 | None:intergenic | 30.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_2:55754009-55754028 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_2:55754112-55754131 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_2:55754147-55754166 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_2:55754148-55754167 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_2:55754201-55754220 | Msa0777040:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_2:55754382-55754401 | Msa0777040:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_2:55754494-55754513 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_2:55754495-55754514 | Msa0777040:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_2:55754496-55754515 | Msa0777040:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_2:55754532-55754551 | Msa0777040:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_2:55754585-55754604 | Msa0777040:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_2:55754655-55754674 | Msa0777040:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_2:55754659-55754678 | Msa0777040:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_2:55754703-55754722 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_2:55754795-55754814 | Msa0777040:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_2:55755376-55755395 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_2:55755508-55755527 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_2:55755683-55755702 | Msa0777040:CDS | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_2:55755734-55755753 | Msa0777040:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_2:55755751-55755770 | Msa0777040:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_2:55755825-55755844 | Msa0777040:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_2:55755826-55755845 | Msa0777040:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_2:55755896-55755915 | None:intergenic | 35.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_2:55754009-55754028 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_2:55754112-55754131 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_2:55754147-55754166 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_2:55754148-55754167 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_2:55754201-55754220 | Msa0777040:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_2:55754382-55754401 | Msa0777040:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_2:55754494-55754513 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_2:55754495-55754514 | Msa0777040:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_2:55754496-55754515 | Msa0777040:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_2:55754532-55754551 | Msa0777040:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_2:55754585-55754604 | Msa0777040:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_2:55754655-55754674 | Msa0777040:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_2:55754659-55754678 | Msa0777040:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_2:55754703-55754722 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_2:55754795-55754814 | Msa0777040:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_2:55755376-55755395 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_2:55755508-55755527 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_2:55755683-55755702 | Msa0777040:CDS | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_2:55755734-55755753 | Msa0777040:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_2:55755751-55755770 | Msa0777040:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_2:55755825-55755844 | Msa0777040:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_2:55755826-55755845 | Msa0777040:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_2:55755896-55755915 | None:intergenic | 35.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_2:55753976-55753995 | Msa0777040:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_2:55754079-55754098 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_2:55754076-55754095 | Msa0777040:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_2:55754107-55754126 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_2:55754343-55754362 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_2:55754383-55754402 | Msa0777040:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_2:55754600-55754619 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_2:55754601-55754620 | None:intergenic | 40.0% | |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_2:55754658-55754677 | Msa0777040:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_2:55754660-55754679 | Msa0777040:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_2:55754800-55754819 | Msa0777040:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_2:55754808-55754827 | Msa0777040:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_2:55755227-55755246 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_2:55755228-55755247 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_2:55755228-55755247 | Msa0777040:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_2:55755237-55755256 | Msa0777040:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_2:55755241-55755260 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_2:55755281-55755300 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_2:55755282-55755301 | Msa0777040:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_2:55755624-55755643 | Msa0777040:intron | 40.0% |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_2:55755733-55755752 | Msa0777040:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_2:55755800-55755819 | Msa0777040:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_2:55755848-55755867 | Msa0777040:CDS | 40.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_2:55753976-55753995 | Msa0777040:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_2:55754079-55754098 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_2:55754076-55754095 | Msa0777040:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_2:55754107-55754126 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_2:55754343-55754362 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_2:55754383-55754402 | Msa0777040:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_2:55754600-55754619 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_2:55754601-55754620 | None:intergenic | 40.0% | |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_2:55754658-55754677 | Msa0777040:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_2:55754660-55754679 | Msa0777040:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_2:55754800-55754819 | Msa0777040:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_2:55754808-55754827 | Msa0777040:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_2:55755227-55755246 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_2:55755228-55755247 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_2:55755228-55755247 | Msa0777040:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_2:55755237-55755256 | Msa0777040:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_2:55755241-55755260 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_2:55755281-55755300 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_2:55755282-55755301 | Msa0777040:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_2:55755624-55755643 | Msa0777040:intron | 40.0% |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_2:55755733-55755752 | Msa0777040:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_2:55755800-55755819 | Msa0777040:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_2:55755848-55755867 | Msa0777040:CDS | 40.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_2:55753987-55754006 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_2:55754096-55754115 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_2:55754139-55754158 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_2:55754144-55754163 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_2:55754175-55754194 | Msa0777040:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_2:55754289-55754308 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_2:55754323-55754342 | Msa0777040:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_2:55754327-55754346 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_2:55754328-55754347 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_2:55754341-55754360 | Msa0777040:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_2:55754396-55754415 | Msa0777040:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_2:55754535-55754554 | Msa0777040:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_2:55754538-55754557 | Msa0777040:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_2:55754545-55754564 | Msa0777040:CDS | 45.0% | |
| GATCTCCCACATGTTGTTGA+TGG | + | chr5_2:55754622-55754641 | Msa0777040:CDS | 45.0% | |
| GCAAGCCATCAACAACATGT+GGG | - | chr5_2:55754630-55754649 | None:intergenic | 45.0% | |
| TGCAAGCCATCAACAACATG+TGG | - | chr5_2:55754631-55754650 | None:intergenic | 45.0% | |
| !! | CATGTTGTTGATGGCTTGCA+AGG | + | chr5_2:55754631-55754650 | Msa0777040:CDS | 45.0% |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_2:55755233-55755252 | None:intergenic | 45.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_2:55753987-55754006 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_2:55754096-55754115 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_2:55754139-55754158 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_2:55754144-55754163 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_2:55754175-55754194 | Msa0777040:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_2:55754289-55754308 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_2:55754323-55754342 | Msa0777040:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_2:55754327-55754346 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_2:55754328-55754347 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_2:55754341-55754360 | Msa0777040:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_2:55754396-55754415 | Msa0777040:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_2:55754535-55754554 | Msa0777040:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_2:55754538-55754557 | Msa0777040:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_2:55754545-55754564 | Msa0777040:CDS | 45.0% | |
| GATCTCCCACATGTTGTTGA+TGG | + | chr5_2:55754622-55754641 | Msa0777040:CDS | 45.0% | |
| GCAAGCCATCAACAACATGT+GGG | - | chr5_2:55754630-55754649 | None:intergenic | 45.0% | |
| TGCAAGCCATCAACAACATG+TGG | - | chr5_2:55754631-55754650 | None:intergenic | 45.0% | |
| !! | CATGTTGTTGATGGCTTGCA+AGG | + | chr5_2:55754631-55754650 | Msa0777040:CDS | 45.0% |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_2:55755233-55755252 | None:intergenic | 45.0% | |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_2:55754913-55754932 | Msa0777040:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_2:55754914-55754933 | Msa0777040:intron | 5.0% |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_2:55754913-55754932 | Msa0777040:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_2:55754914-55754933 | Msa0777040:intron | 5.0% |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_2:55753993-55754012 | Msa0777040:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_2:55754160-55754179 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_2:55754395-55754414 | Msa0777040:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_2:55754544-55754563 | Msa0777040:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_2:55755286-55755305 | Msa0777040:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_2:55755308-55755327 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_2:55755313-55755332 | Msa0777040:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_2:55755317-55755336 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_2:55755318-55755337 | None:intergenic | 50.0% | |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_2:55753993-55754012 | Msa0777040:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_2:55754160-55754179 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_2:55754395-55754414 | Msa0777040:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_2:55754544-55754563 | Msa0777040:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_2:55755286-55755305 | Msa0777040:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_2:55755308-55755327 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_2:55755313-55755332 | Msa0777040:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_2:55755317-55755336 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_2:55755318-55755337 | None:intergenic | 50.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_2:55754304-55754323 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_2:55754552-55754571 | Msa0777040:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_2:55755297-55755316 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_2:55755298-55755317 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_2:55755303-55755322 | Msa0777040:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_2:55755304-55755323 | Msa0777040:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_2:55755307-55755326 | Msa0777040:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_2:55755864-55755883 | None:intergenic | 55.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_2:55754304-55754323 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_2:55754552-55754571 | Msa0777040:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_2:55755297-55755316 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_2:55755298-55755317 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_2:55755303-55755322 | Msa0777040:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_2:55755304-55755323 | Msa0777040:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_2:55755307-55755326 | Msa0777040:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_2:55755864-55755883 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 55753950 | 55755943 | 55753950 | ID=Msa0777040;Name=Msa0777040 |
| chr5_2 | mRNA | 55753950 | 55755943 | 55753950 | ID=Msa0777040-mRNA-1;Parent=Msa0777040;Name=Msa0777040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|363 |
| chr5_2 | exon | 55753950 | 55754726 | 55753950 | ID=Msa0777040-mRNA-1:exon:16472;Parent=Msa0777040-mRNA-1 |
| chr5_2 | exon | 55755629 | 55755943 | 55755629 | ID=Msa0777040-mRNA-1:exon:16473;Parent=Msa0777040-mRNA-1 |
| chr5_2 | CDS | 55753950 | 55754726 | 55753950 | ID=Msa0777040-mRNA-1:cds;Parent=Msa0777040-mRNA-1 |
| chr5_2 | CDS | 55755629 | 55755943 | 55755629 | ID=Msa0777040-mRNA-1:cds;Parent=Msa0777040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
