AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030600 MtrunA17_Chr1g0194961 98.626 364 5 0 1 364 1 364 0.0 728
Msa0030600 MtrunA17_Chr7g0271721 68.820 356 107 1 8 363 3 354 0.0 518
Msa0030600 MtrunA17_Chr5g0438731 33.829 269 153 6 10 258 36 299 2.35e-40 148
Msa0030600 MtrunA17_Chr5g0438731 40.741 135 72 4 27 159 188 316 3.04e-20 91.7
Msa0030600 MtrunA17_Chr2g0287471 50.000 104 49 2 147 250 28 128 6.41e-24 100
Msa0030600 MtrunA17_Chr2g0287471 38.583 127 70 4 10 131 5 128 1.34e-17 83.2
Msa0030600 MtrunA17_Chr2g0326581 35.616 219 119 8 31 234 290 501 8.57e-24 102
Msa0030600 MtrunA17_Chr2g0326581 37.209 172 88 4 30 200 79 231 4.60e-19 88.6
Msa0030600 MtrunA17_Chr2g0326581 38.857 175 90 7 149 315 80 245 9.26e-18 84.7
Msa0030600 MtrunA17_Chr2g0326581 34.483 116 71 3 30 142 417 530 2.11e-14 74.3
Msa0030600 MtrunA17_Chr1g0200731 40.000 120 69 2 31 149 95 212 3.67e-22 97.4
Msa0030600 MtrunA17_Chr3g0124851 46.602 103 54 1 149 251 379 480 4.86e-22 97.4
Msa0030600 MtrunA17_Chr3g0124851 47.872 94 46 2 168 258 53 146 1.01e-20 93.6
Msa0030600 MtrunA17_Chr3g0124851 41.818 110 61 2 31 137 35 144 3.50e-20 91.7
Msa0030600 MtrunA17_Chr3g0124851 41.860 86 49 1 47 132 396 480 9.65e-16 78.6
Msa0030600 MtrunA17_Chr4g0029181 44.318 88 47 1 149 236 440 525 5.76e-18 85.5
Msa0030600 MtrunA17_Chr4g0029181 38.636 132 77 3 26 156 97 225 1.60e-16 80.9
Msa0030600 MtrunA17_Chr4g0029181 43.885 139 66 5 149 279 102 236 2.37e-16 80.5
Msa0030600 MtrunA17_Chr4g0029181 34.259 108 62 4 30 132 439 542 1.54e-12 68.9
Msa0030600 MtrunA17_Chr2g0326241 33.884 121 77 3 18 136 27 146 6.75e-15 71.6
Msa0030600 MtrunA17_Chr2g0326241 29.524 105 73 1 147 251 39 142 5.19e-11 60.8
Msa0030600 MtrunA17_Chr4g0041801 33.913 115 62 2 34 134 146 260 6.89e-15 75.9
Msa0030600 MtrunA17_Chr4g0041801 30.851 94 51 2 169 248 162 255 4.34e-11 63.9
Msa0030600 MtrunA17_Chr1g0211871 39.535 86 46 2 157 242 78 157 1.90e-13 68.2
Msa0030600 MtrunA17_Chr1g0201781 32.258 93 60 2 156 248 69 158 3.89e-13 67.0
Msa0030600 MtrunA17_Chr1g0201781 36.082 97 55 4 46 141 78 168 7.99e-11 60.5
Msa0030600 MtrunA17_Chr3g0125821 35.955 89 55 1 145 233 66 152 1.24e-12 65.9
Msa0030600 MtrunA17_Chr2g0331681 34.513 113 70 3 34 144 67 177 1.33e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030600 AT2G47470.1 78.788 330 70 0 34 363 28 357 0.0 547
Msa0030600 AT2G47470.4 73.939 330 60 1 34 363 28 331 7.40e-178 497
Msa0030600 AT2G47470.3 80.576 278 54 0 34 311 28 305 5.20e-168 472
Msa0030600 AT2G47470.2 81.590 239 44 0 34 272 28 266 7.07e-147 416
Msa0030600 AT1G04980.1 34.364 291 151 7 27 297 30 300 3.00e-42 153
Msa0030600 AT2G32920.1 33.681 288 154 7 27 297 28 295 1.46e-41 151
Msa0030600 AT5G60640.3 34.884 172 92 4 30 200 104 256 9.04e-23 100
Msa0030600 AT5G60640.3 46.591 88 45 1 149 236 379 464 1.05e-19 90.9
Msa0030600 AT5G60640.3 34.028 144 86 4 29 167 377 516 1.87e-14 75.1
Msa0030600 AT5G60640.2 34.884 172 92 4 30 200 104 256 1.06e-22 99.8
Msa0030600 AT5G60640.2 34.921 189 104 8 62 236 345 528 7.45e-22 97.4
Msa0030600 AT5G60640.1 34.884 172 92 4 30 200 104 256 1.12e-22 99.8
Msa0030600 AT5G60640.1 34.375 192 107 8 59 236 342 528 8.48e-22 97.4
Msa0030600 AT1G21750.2 47.826 92 45 2 168 256 50 141 7.92e-21 94.0
Msa0030600 AT1G21750.2 34.752 141 77 4 12 137 1 141 1.10e-20 93.6
Msa0030600 AT1G21750.2 41.748 103 59 1 149 251 376 477 2.02e-18 87.0
Msa0030600 AT1G21750.2 38.739 111 57 2 22 132 378 477 4.82e-15 76.6
Msa0030600 AT1G21750.1 41.284 109 63 1 149 257 376 483 8.05e-21 94.0
Msa0030600 AT1G21750.1 47.826 92 45 2 168 256 50 141 1.01e-20 93.6
Msa0030600 AT1G21750.1 34.752 141 77 4 12 137 1 141 1.26e-20 93.6
Msa0030600 AT1G21750.1 37.607 117 62 2 22 138 378 483 2.07e-15 77.8
Msa0030600 AT3G54960.1 34.043 188 111 6 58 234 337 522 9.95e-21 94.0
Msa0030600 AT3G54960.1 34.637 179 97 5 23 200 93 252 1.75e-18 87.4
Msa0030600 AT3G54960.1 34.028 144 89 4 30 169 438 579 1.91e-14 75.1
Msa0030600 AT3G54960.1 31.429 175 103 6 149 315 101 266 2.62e-14 74.7
Msa0030600 AT1G77510.1 37.190 121 75 1 149 269 374 493 2.24e-20 92.8
Msa0030600 AT1G77510.1 35.714 126 77 3 31 152 31 156 1.28e-18 87.4
Msa0030600 AT1G77510.1 35.338 133 76 4 149 272 31 162 1.72e-18 87.0
Msa0030600 AT1G77510.1 38.739 111 57 2 22 132 376 475 1.54e-15 78.2
Msa0030600 AT3G54960.2 34.637 179 97 5 23 200 93 252 1.14e-18 87.8
Msa0030600 AT3G54960.2 32.911 158 95 5 61 207 340 497 4.90e-15 76.6
Msa0030600 AT3G54960.2 31.429 175 103 6 149 315 101 266 1.78e-14 75.1
Msa0030600 AT1G07960.4 37.383 107 65 2 30 135 26 131 6.85e-17 77.4
Msa0030600 AT1G07960.4 28.571 126 88 2 140 265 18 141 3.87e-16 75.1
Msa0030600 AT1G07960.3 37.383 107 65 2 30 135 26 131 6.85e-17 77.4
Msa0030600 AT1G07960.3 28.571 126 88 2 140 265 18 141 3.87e-16 75.1
Msa0030600 AT1G07960.1 37.383 107 65 2 30 135 26 131 6.85e-17 77.4
Msa0030600 AT1G07960.1 28.571 126 88 2 140 265 18 141 3.87e-16 75.1
Msa0030600 AT1G07960.2 37.383 107 65 2 30 135 26 131 6.85e-17 77.4
Msa0030600 AT1G07960.2 28.571 126 88 2 140 265 18 141 3.87e-16 75.1
Msa0030600 AT1G35620.1 31.667 120 79 2 31 149 34 151 2.52e-15 77.4
Msa0030600 AT1G35620.1 36.496 137 70 6 149 283 34 155 3.95e-14 73.6
Msa0030600 AT4G27080.1 34.454 119 64 2 28 132 140 258 1.35e-13 72.4
Msa0030600 AT4G27080.2 34.454 119 64 2 28 132 192 310 1.58e-13 72.0
Msa0030600 AT2G01270.1 33.577 137 70 5 24 139 30 166 6.05e-13 70.1
Msa0030600 AT1G43560.1 32.979 94 60 2 155 248 66 156 1.11e-12 65.9
Msa0030600 AT1G76760.1 33.766 77 49 1 155 231 71 145 1.02e-11 63.5
Msa0030600 AT1G52260.1 34.021 97 61 2 161 256 90 184 2.17e-11 65.5
Msa0030600 AT3G20560.1 30.769 169 87 7 29 181 141 295 2.18e-11 65.5
Msa0030600 AT1G15020.3 31.884 138 71 6 24 139 36 172 7.46e-11 63.9
Msa0030600 AT1G15020.1 31.884 138 71 6 24 139 36 172 7.46e-11 63.9
Msa0030600 AT1G15020.2 31.884 138 71 6 24 139 36 172 7.53e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATATTATAGAACAATTT+TGG 0.055828 1_1:+56988635 Msa0030600:three_prime_UTR
CTGTTTCCTTCGTTGGTTTA+TGG 0.147838 1_1:+56988734 Msa0030600:three_prime_UTR
ACAACTTCGTTGAAGGTTTC+AGG 0.182439 1_1:-56986674 None:intergenic
CGATGTAGTGATTGCAAATT+TGG 0.193790 1_1:+56987093 Msa0030600:CDS
AGTACTTCTTAGAAACTTTC+AGG 0.203871 1_1:-56988090 None:intergenic
GGCTGGGGATGGTCTAATTT+AGG 0.240134 1_1:+56988983 Msa0030600:three_prime_UTR
CACCGGCTTTGTTGCCCTTT+GGG 0.256628 1_1:-56987485 None:intergenic
CTCAACTTCCTCTTCAATTC+GGG 0.267301 1_1:-56987857 None:intergenic
CAGAAAGAAGAAGATGAAAA+TGG 0.277955 1_1:+56984156 Msa0030600:exon
TATAATTAATCAACGAATAA+AGG 0.281432 1_1:-56988867 None:intergenic
ATTTGGATGCCGACAAATAT+AGG 0.282633 1_1:+56987110 Msa0030600:CDS
TCTACATATGCTTGACTTAA+CGG 0.295936 1_1:+56988473 Msa0030600:exon
TCATCTTCTTCTTTCTGTTT+CGG 0.296011 1_1:-56984150 None:intergenic
CTTGGCAATCAAAACAGATT+TGG 0.298806 1_1:-56985486 None:intergenic
TCACCGGCTTTGTTGCCCTT+TGG 0.302925 1_1:-56987486 None:intergenic
AAGAGTGTGTGCAGCAAATA+TGG 0.310178 1_1:+56985996 Msa0030600:CDS
TCTCAACTTCCTCTTCAATT+CGG 0.333016 1_1:-56987858 None:intergenic
AAACTCAACCAAGACATCTT+TGG 0.333568 1_1:-56986708 None:intergenic
GACATTGACATCAAAATTGC+TGG 0.343255 1_1:+56988559 Msa0030600:three_prime_UTR
TGCAGCAAATATGGCGTCTC+TGG 0.357109 1_1:+56986005 Msa0030600:CDS
CCAAAATTGTTCTATAATAT+AGG 0.359717 1_1:-56988635 None:intergenic
GTCAATTCGTCGGCCTTAGC+AGG 0.363199 1_1:-56988431 None:intergenic
AACAAAGCCGGTGAAGATTA+TGG 0.369872 1_1:+56987495 Msa0030600:CDS
TTGGGTTCTAGAGATCCTTT+TGG 0.375047 1_1:-56986050 None:intergenic
GCAGTGGGACACTAGCTTCC+AGG 0.391290 1_1:-56988515 None:intergenic
TTTGGATGCCGACAAATATA+GGG 0.392085 1_1:+56987111 Msa0030600:CDS
AAGGAAGTTGGTCAAGATAA+AGG 0.392677 1_1:+56984289 Msa0030600:CDS
TTAATACATGACAACTACTA+TGG 0.401254 1_1:+56988781 Msa0030600:three_prime_UTR
AAGAGACTTGGATGACTTTG+TGG 0.405410 1_1:+56987524 Msa0030600:CDS
AGCTCAAGGGTTCTGCTTCT+AGG 0.408451 1_1:+56987881 Msa0030600:CDS
GATCTCAGGTAAACTACAAC+GGG 0.409396 1_1:-56988680 None:intergenic
AGTGGAAGACTTGGACGAAT+TGG 0.413484 1_1:+56987786 Msa0030600:CDS
AGCCAGGTCCCTATATTTGT+CGG 0.426037 1_1:-56987119 None:intergenic
ATCCAAGACAACTTCGTTGA+AGG 0.433274 1_1:-56986681 None:intergenic
GAAAATTTCGAGAAGGAAGT+TGG 0.442730 1_1:+56984277 Msa0030600:CDS
TTACAATCTGTTTCCTTCGT+TGG 0.446112 1_1:+56988727 Msa0030600:three_prime_UTR
AACCTTCAACGAAGTTGTCT+TGG 0.447834 1_1:+56986679 Msa0030600:CDS
GAAAATTCCTGTAGGTTTGA+AGG 0.449227 1_1:+56986190 Msa0030600:intron
TCTAAGAAGTACTTGGAGAA+AGG 0.455359 1_1:+56988100 Msa0030600:CDS
TTATGGAGGTGGAAGAGACT+TGG 0.456654 1_1:+56987512 Msa0030600:CDS
GAAAGTTTCTAAGAAGTACT+TGG 0.456740 1_1:+56988093 Msa0030600:CDS
TTCCCAAAGGGCAACAAAGC+CGG 0.473546 1_1:+56987483 Msa0030600:CDS
GCAATTTCTACCATCGATCC+TGG 0.474691 1_1:+56988497 Msa0030600:three_prime_UTR
ACGATAGTTAATGCATCATA+AGG 0.475630 1_1:+56988820 Msa0030600:three_prime_UTR
AAATGGAGATGCATCAGATC+TGG 0.477555 1_1:+56984173 Msa0030600:CDS
CCTAGAACGACTACTTGAAA+AGG 0.487467 1_1:+56988153 Msa0030600:CDS
TTCTGTATAGGCTGGTATAG+TGG 0.489871 1_1:+56987768 Msa0030600:intron
TTTCTTGAGGGTCAATTCGT+CGG 0.493083 1_1:-56988441 None:intergenic
TTGGAAACCACTGAATCGTT+GGG 0.493402 1_1:-56986031 None:intergenic
TTTGGAAACCACTGAATCGT+TGG 0.494227 1_1:-56986032 None:intergenic
GCCCTTTGGGAAGAACTTCA+AGG 0.495998 1_1:-56987472 None:intergenic
ACCTTGAAGTTCTTCCCAAA+GGG 0.499568 1_1:+56987471 Msa0030600:CDS
GCCGGTGAAGATTATGGAGG+TGG 0.503383 1_1:+56987501 Msa0030600:CDS
TTATGCAGGTATGATGTAAG+TGG 0.507495 1_1:+56987441 Msa0030600:intron
ACGATTCAGTGGTTTCCAAA+AGG 0.517733 1_1:+56986035 Msa0030600:CDS
CTCTTCAATTCGGGCAAACA+CGG 0.519231 1_1:-56987848 None:intergenic
TACCTTGAAGTTCTTCCCAA+AGG 0.520489 1_1:+56987470 Msa0030600:CDS
TCCACCTCCATAATCTTCAC+CGG 0.524594 1_1:-56987502 None:intergenic
ATAAACTTGTCGCATGAAGA+TGG 0.526846 1_1:+56988758 Msa0030600:three_prime_UTR
GGATGAAACCAAAGATGTCT+TGG 0.528319 1_1:+56986700 Msa0030600:CDS
GGCTGGTATAGTGGAAGACT+TGG 0.534298 1_1:+56987777 Msa0030600:intron
ACATTGACATCAAAATTGCT+GGG 0.538476 1_1:+56988560 Msa0030600:three_prime_UTR
TCGTTGAGTTCTACGCCCCT+TGG 0.544107 1_1:+56984317 Msa0030600:CDS
TGCTGATGACAAAGAGAAGA+AGG 0.546178 1_1:+56987825 Msa0030600:CDS
AAAATTCCTGTAGGTTTGAA+GGG 0.547840 1_1:+56986191 Msa0030600:intron
GCAGTCTATCAGCCCTGCTA+AGG 0.553095 1_1:+56988418 Msa0030600:intron
GGAACAAGTCGAGATGCAAA+AGG 0.557736 1_1:+56987567 Msa0030600:CDS
CGTGTTTGCCCGAATTGAAG+AGG 0.560187 1_1:+56987849 Msa0030600:CDS
AGACTTGGACGAATTGGTAA+AGG 0.570577 1_1:+56987792 Msa0030600:CDS
TCAATTCGTCGGCCTTAGCA+GGG 0.573157 1_1:-56988430 None:intergenic
CAACTACTATGGTTAATACA+AGG 0.573319 1_1:+56988792 Msa0030600:three_prime_UTR
TACAGCTCCATCTCATGTAG+TGG 0.576987 1_1:+56986643 Msa0030600:CDS
GCAGCAAATATGGCGTCTCT+GGG 0.581952 1_1:+56986006 Msa0030600:CDS
TTCATCACAAGGAGCTGCAG+TGG 0.584092 1_1:-56988531 None:intergenic
CTGGGTACCCAACGATTCAG+TGG 0.589603 1_1:+56986024 Msa0030600:CDS
GCTGAGTTTGTAAACACAGA+AGG 0.589800 1_1:+56986235 Msa0030600:CDS
AGAGGAAGTTGAGAAGCTCA+AGG 0.591148 1_1:+56987867 Msa0030600:CDS
GTTAGCACCACTACATGAGA+TGG 0.595533 1_1:-56986650 None:intergenic
GACTGAAGAAAATTTCGAGA+AGG 0.599089 1_1:+56984270 Msa0030600:CDS
ATAATCAGCACGTGCTGTAG+CGG 0.600017 1_1:+56984122 Msa0030600:five_prime_UTR
AAAAGGACAGCTTACTTCTG+AGG 0.602957 1_1:+56987584 Msa0030600:CDS
GAGGAAGTTGAGAAGCTCAA+GGG 0.606083 1_1:+56987868 Msa0030600:CDS
TGCCGACAAATATAGGGACC+TGG 0.607166 1_1:+56987117 Msa0030600:CDS
AGCTGTAGCAATCTTCACAT+TGG 0.611470 1_1:-56986627 None:intergenic
ACACTAGCTTCCAGGATCGA+TGG 0.613295 1_1:-56988507 None:intergenic
GCTCCGGAATATGAAAAGCT+CGG 0.615790 1_1:+56985446 Msa0030600:CDS
TTTGGGAAGAACTTCAAGGT+AGG 0.618623 1_1:-56987468 None:intergenic
GCAAGTGATTCTGCAGTGCG+TGG 0.619080 1_1:-56986214 None:intergenic
CGATCTCAGGTAAACTACAA+CGG 0.625933 1_1:-56988681 None:intergenic
TCATCACAAGGAGCTGCAGT+GGG 0.644752 1_1:-56988530 None:intergenic
ATCAGTTTCAGCAGACGACG+TGG 0.654164 1_1:+56984240 Msa0030600:CDS
TTTATACCATAAACCAACGA+AGG 0.674319 1_1:-56988740 None:intergenic
GAGTTTGTAAACACAGAAGG+AGG 0.682221 1_1:+56986238 Msa0030600:CDS
AATGTCAAACATTCATCACA+AGG 0.685008 1_1:-56988542 None:intergenic
AAAGCCGGTGAAGATTATGG+AGG 0.748922 1_1:+56987498 Msa0030600:CDS
ATCTCAGGTAAACTACAACG+GGG 0.830776 1_1:-56988679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATCAAAACTAAATTT+CGG - chr1_1:56984513-56984532 None:intergenic 10.0%
!!! TAGTTTTGATAATTAAATTA+AGG + chr1_1:56984518-56984537 Msa0030600:intron 10.0%
!! CAAAATTAATGATTAAAAAA+TGG - chr1_1:56986777-56986796 None:intergenic 10.0%
!!! TTATACTCTTTTAATAGATA+AGG + chr1_1:56984984-56985003 Msa0030600:intron 15.0%
!!! AATATCTTTTAATAGAATGA+AGG + chr1_1:56985090-56985109 Msa0030600:intron 15.0%
!!! ATATCTTTTAATAGAATGAA+GGG + chr1_1:56985091-56985110 Msa0030600:intron 15.0%
!! AGAACTTTAATTAATAATTC+AGG + chr1_1:56985161-56985180 Msa0030600:intron 15.0%
!!! TTTTCTTAATCTATAACAAA+TGG - chr1_1:56985663-56985682 None:intergenic 15.0%
!!! TATTATTTTCTAAAAAGTCA+AGG - chr1_1:56986088-56986107 None:intergenic 15.0%
!!! TTTTTCATATAAAAAATTGG+CGG + chr1_1:56987663-56987682 Msa0030600:intron 15.0%
!!! CTATATTATAGAACAATTTT+GGG + chr1_1:56988636-56988655 Msa0030600:three_prime_UTR 15.0%
!!! TATATTATAGAACAATTTTG+GGG + chr1_1:56988637-56988656 Msa0030600:three_prime_UTR 15.0%
!! TATAATTAATCAACGAATAA+AGG - chr1_1:56988870-56988889 None:intergenic 15.0%
!!! ATATTCAGTATTTTAAAACT+TGG + chr1_1:56988962-56988981 Msa0030600:three_prime_UTR 15.0%
!!! TAGTTTTATCATCTGATTTA+CGG + chr1_1:56984397-56984416 Msa0030600:intron 20.0%
!! ATGAATTGTTGTAAATGATA+CGG + chr1_1:56984423-56984442 Msa0030600:intron 20.0%
!! TCTCTAATTATTTGATTGAA+GGG - chr1_1:56984598-56984617 None:intergenic 20.0%
!! TTCTCTAATTATTTGATTGA+AGG - chr1_1:56984599-56984618 None:intergenic 20.0%
!! TAAACTCTACTTATATAACA+TGG - chr1_1:56984693-56984712 None:intergenic 20.0%
!! TCTACATTACAAATTACAAA+GGG - chr1_1:56985240-56985259 None:intergenic 20.0%
!! TTCACTTTATCTGTAATAAT+AGG + chr1_1:56985402-56985421 Msa0030600:intron 20.0%
!!! ATTTCTCTGTATTTTTAGTA+AGG + chr1_1:56985691-56985710 Msa0030600:intron 20.0%
!! TATTAAATCATCAATGAGAA+CGG - chr1_1:56985913-56985932 None:intergenic 20.0%
!!! CTAACTTATTAATTTGCTAT+AGG + chr1_1:56985956-56985975 Msa0030600:intron 20.0%
!!! TTGATATGATTTTATATCTC+AGG + chr1_1:56986108-56986127 Msa0030600:intron 20.0%
!! GTTAATCTAATACTTGATTT+CGG + chr1_1:56986168-56986187 Msa0030600:intron 20.0%
!!! TTTTTGAAGTACTTTAATGT+AGG + chr1_1:56986409-56986428 Msa0030600:intron 20.0%
!! AATGGCAATATGATAATTAT+TGG - chr1_1:56986759-56986778 None:intergenic 20.0%
!!! TATTTTAATGCAAAACAAAG+AGG - chr1_1:56986807-56986826 None:intergenic 20.0%
!! CCAACTTTAAATTGATAAAA+AGG - chr1_1:56986978-56986997 None:intergenic 20.0%
!!! CCTTTTTATCAATTTAAAGT+TGG + chr1_1:56986975-56986994 Msa0030600:intron 20.0%
!!! AACTTTTTCATAAATCTGAA+GGG - chr1_1:56987050-56987069 None:intergenic 20.0%
!!! TTTTTTTTCTCCATTAGATA+CGG + chr1_1:56988058-56988077 Msa0030600:intron 20.0%
!!! ATTGCAAAAAAGTTATTTCA+AGG - chr1_1:56988274-56988293 None:intergenic 20.0%
!! TTTAATTATTTGGTCGTTAA+AGG + chr1_1:56988319-56988338 Msa0030600:intron 20.0%
!!! TTGTAAAAATTTGATAATCG+TGG + chr1_1:56988369-56988388 Msa0030600:intron 20.0%
!! CCAAAATTGTTCTATAATAT+AGG - chr1_1:56988638-56988657 None:intergenic 20.0%
!!! CCTATATTATAGAACAATTT+TGG + chr1_1:56988635-56988654 Msa0030600:three_prime_UTR 20.0%
! CATCAAATCAAAAGCTAAAA+CGG - chr1_1:56984451-56984470 None:intergenic 25.0%
!! AATTATTAACAATCTAGCTC+AGG + chr1_1:56984564-56984583 Msa0030600:intron 25.0%
! TATTACAATGATAAGACAGT+AGG + chr1_1:56984636-56984655 Msa0030600:intron 25.0%
!!! ACATGGTTATTTTGTGTTTA+CGG - chr1_1:56984676-56984695 None:intergenic 25.0%
! ACGCATAAGTTTATTTACTA+TGG - chr1_1:56984924-56984943 None:intergenic 25.0%
! CTCTACATTACAAATTACAA+AGG - chr1_1:56985241-56985260 None:intergenic 25.0%
! TTTATCTGTAATAATAGGTG+TGG + chr1_1:56985407-56985426 Msa0030600:intron 25.0%
! TTTCAGTTTAATAATCTCCT+CGG - chr1_1:56985621-56985640 None:intergenic 25.0%
!!! CACACGTAATTTTAAAGTAA+AGG + chr1_1:56985800-56985819 Msa0030600:intron 25.0%
!!! ACGTAATTTTAAAGTAAAGG+CGG + chr1_1:56985803-56985822 Msa0030600:intron 25.0%
! GTTAAGAATATAAATTTCCC+AGG - chr1_1:56985845-56985864 None:intergenic 25.0%
!!! ACTTATTAATTTGCTATAGG+TGG + chr1_1:56985959-56985978 Msa0030600:intron 25.0%
! AAAAAATAGATGTGAAATGC+AGG - chr1_1:56986148-56986167 None:intergenic 25.0%
!!! AGTAACAGATGGTTTTAAAA+CGG - chr1_1:56986273-56986292 None:intergenic 25.0%
! ATAGATATTACAGTAACAGA+TGG - chr1_1:56986284-56986303 None:intergenic 25.0%
!! AAAAAAGTATATGATGCTAC+AGG - chr1_1:56986393-56986412 None:intergenic 25.0%
!!! GATTTTTTTAGTTTCTGTGA+TGG + chr1_1:56986490-56986509 Msa0030600:intron 25.0%
! TTGCAATTGTACTATTGTAA+TGG + chr1_1:56986572-56986591 Msa0030600:intron 25.0%
! ATTGTAAATTAGTAATGTCC+TGG + chr1_1:56986826-56986845 Msa0030600:intron 25.0%
!!! TGAACTTTTGTTATTTTGCA+AGG + chr1_1:56986902-56986921 Msa0030600:intron 25.0%
! TGAAAGAGTTATGTTTAACT+TGG + chr1_1:56987011-56987030 Msa0030600:intron 25.0%
!!! ACTTTTTCATAAATCTGAAG+GGG - chr1_1:56987049-56987068 None:intergenic 25.0%
!!! CAACTTTTTCATAAATCTGA+AGG - chr1_1:56987051-56987070 None:intergenic 25.0%
!!! AACCAACTCTTTTTAAGATT+AGG - chr1_1:56987164-56987183 None:intergenic 25.0%
! ATCATTTCAGAATATTGTCA+TGG + chr1_1:56987916-56987935 Msa0030600:intron 25.0%
!!! TTTTTTTCTCCATTAGATAC+GGG + chr1_1:56988059-56988078 Msa0030600:intron 25.0%
! GTTAAACTTGAATTTCTCTT+TGG + chr1_1:56988246-56988265 Msa0030600:intron 25.0%
!! AGACAATATGTTTTTCTTGA+GGG - chr1_1:56988456-56988475 None:intergenic 25.0%
!! TAGACAATATGTTTTTCTTG+AGG - chr1_1:56988457-56988476 None:intergenic 25.0%
! TTAATACATGACAACTACTA+TGG + chr1_1:56988781-56988800 Msa0030600:three_prime_UTR 25.0%
TCATCTTCTTCTTTCTGTTT+CGG - chr1_1:56984153-56984172 None:intergenic 30.0%
CAGAAAGAAGAAGATGAAAA+TGG + chr1_1:56984156-56984175 Msa0030600:exon 30.0%
AAGATCGAGAAAATTACCAA+GGG - chr1_1:56984336-56984355 None:intergenic 30.0%
! TTTTCATTCACTAAGTGATG+TGG - chr1_1:56984778-56984797 None:intergenic 30.0%
TCATAGGTCATTAGGTAATT+TGG + chr1_1:56984810-56984829 Msa0030600:intron 30.0%
! CTGGTTTGCATAAAATAAAC+TGG + chr1_1:56984895-56984914 Msa0030600:intron 30.0%
! TCATCTCGACTATTTGATTT+AGG + chr1_1:56985038-56985057 Msa0030600:intron 30.0%
!! CCTTAATGGATATAGTGTTT+TGG - chr1_1:56985125-56985144 None:intergenic 30.0%
CCAAAACACTATATCCATTA+AGG + chr1_1:56985122-56985141 Msa0030600:intron 30.0%
!!! ATCCATTAAGGTTTTTGAGT+AGG + chr1_1:56985134-56985153 Msa0030600:intron 30.0%
TTCCTACTCAAAAACCTTAA+TGG - chr1_1:56985139-56985158 None:intergenic 30.0%
CAGATAAAATTTACTGAGCT+TGG - chr1_1:56985536-56985555 None:intergenic 30.0%
TGAAACTTTGACATTTACCA+GGG + chr1_1:56985636-56985655 Msa0030600:intron 30.0%
!!! TAATTTTAAAGTAAAGGCGG+AGG + chr1_1:56985806-56985825 Msa0030600:intron 30.0%
AGAATATAAATTTCCCAGGA+TGG - chr1_1:56985841-56985860 None:intergenic 30.0%
AAAATTCCTGTAGGTTTGAA+GGG + chr1_1:56986191-56986210 Msa0030600:intron 30.0%
! GAAGTACTTTAATGTAGGAT+TGG + chr1_1:56986414-56986433 Msa0030600:intron 30.0%
! ATCTAAAACTCTAGTATCTC+AGG - chr1_1:56986444-56986463 None:intergenic 30.0%
AAATACACAGAAGAGAGAAA+GGG - chr1_1:56986549-56986568 None:intergenic 30.0%
AAAATACACAGAAGAGAGAA+AGG - chr1_1:56986550-56986569 None:intergenic 30.0%
!! TAATGGATTTCCTAAACAGA+GGG + chr1_1:56986589-56986608 Msa0030600:intron 30.0%
TTTCACAAACATTCCATGAT+TGG - chr1_1:56986858-56986877 None:intergenic 30.0%
!!! TTTTGTTATTTTGCAAGGTG+TGG + chr1_1:56986907-56986926 Msa0030600:intron 30.0%
! AGTTGCTGCAGTTTTTAAAT+CGG + chr1_1:56987066-56987085 Msa0030600:CDS 30.0%
TGCCTAATCTTAAAAAGAGT+TGG + chr1_1:56987159-56987178 Msa0030600:intron 30.0%
TAAAAAGTGAAGTCCAATAG+AGG + chr1_1:56987206-56987225 Msa0030600:intron 30.0%
GTAGCAAGAAGAAATAATGT+AGG + chr1_1:56987267-56987286 Msa0030600:intron 30.0%
AATGTAGGTACCAAAACAAA+TGG + chr1_1:56987282-56987301 Msa0030600:intron 30.0%
ATGTAGGTACCAAAACAAAT+GGG + chr1_1:56987283-56987302 Msa0030600:intron 30.0%
! AGCATTTTTCCCATTTGTTT+TGG - chr1_1:56987295-56987314 None:intergenic 30.0%
! TTCTGCAATAACTTTTATGC+AGG + chr1_1:56987427-56987446 Msa0030600:intron 30.0%
! GCTTTTATCAATGAGAAATC+TGG + chr1_1:56987546-56987565 Msa0030600:CDS 30.0%
CAAATTAAACAGTTCTCAAG+GGG - chr1_1:56987961-56987980 None:intergenic 30.0%
GCAAATTAAACAGTTCTCAA+GGG - chr1_1:56987962-56987981 None:intergenic 30.0%
TGCAAATTAAACAGTTCTCA+AGG - chr1_1:56987963-56987982 None:intergenic 30.0%
ATTTGCATGCGTATACTTTA+TGG + chr1_1:56987976-56987995 Msa0030600:intron 30.0%
! TTGCTTTAAGCAACATAACA+GGG - chr1_1:56988009-56988028 None:intergenic 30.0%
! TTTGCTTTAAGCAACATAAC+AGG - chr1_1:56988010-56988029 None:intergenic 30.0%
AGTACTTCTTAGAAACTTTC+AGG - chr1_1:56988093-56988112 None:intergenic 30.0%
!! GAAAGTTTCTAAGAAGTACT+TGG + chr1_1:56988093-56988112 Msa0030600:CDS 30.0%
! GAGAAATTCAAGTTTAACCA+AGG - chr1_1:56988244-56988263 None:intergenic 30.0%
AAGGAGATTAAGAATTGAAG+TGG + chr1_1:56988338-56988357 Msa0030600:intron 30.0%
TCTACATATGCTTGACTTAA+CGG + chr1_1:56988473-56988492 Msa0030600:exon 30.0%
AATGTCAAACATTCATCACA+AGG - chr1_1:56988545-56988564 None:intergenic 30.0%
ACATTGACATCAAAATTGCT+GGG + chr1_1:56988560-56988579 Msa0030600:three_prime_UTR 30.0%
!!! ATAGAACAATTTTGGGGTAA+TGG + chr1_1:56988643-56988662 Msa0030600:three_prime_UTR 30.0%
TTTATACCATAAACCAACGA+AGG - chr1_1:56988743-56988762 None:intergenic 30.0%
CAACTACTATGGTTAATACA+AGG + chr1_1:56988792-56988811 Msa0030600:three_prime_UTR 30.0%
ACGATAGTTAATGCATCATA+AGG + chr1_1:56988820-56988839 Msa0030600:three_prime_UTR 30.0%
AACTCAAAAATGAACTCAGA+AGG + chr1_1:56988917-56988936 Msa0030600:three_prime_UTR 30.0%
!!! TCAGTATTTTAAAACTTGGC+TGG + chr1_1:56988966-56988985 Msa0030600:three_prime_UTR 30.0%
!!! CAGTATTTTAAAACTTGGCT+GGG + chr1_1:56988967-56988986 Msa0030600:three_prime_UTR 30.0%
!!! AGTATTTTAAAACTTGGCTG+GGG + chr1_1:56988968-56988987 Msa0030600:three_prime_UTR 30.0%
GACTGAAGAAAATTTCGAGA+AGG + chr1_1:56984270-56984289 Msa0030600:CDS 35.0%
GAAAATTTCGAGAAGGAAGT+TGG + chr1_1:56984277-56984296 Msa0030600:CDS 35.0%
! AAGGAAGTTGGTCAAGATAA+AGG + chr1_1:56984289-56984308 Msa0030600:CDS 35.0%
AGATCGAGAAAATTACCAAG+GGG - chr1_1:56984335-56984354 None:intergenic 35.0%
GAAGATCGAGAAAATTACCA+AGG - chr1_1:56984337-56984356 None:intergenic 35.0%
!! TTTTTCTGATTCGCTTCGAT+CGG + chr1_1:56984360-56984379 Msa0030600:intron 35.0%
AAAAACACATGCCTTGTCAT+AGG + chr1_1:56984794-56984813 Msa0030600:intron 35.0%
TTACCTAATGACCTATGACA+AGG - chr1_1:56984808-56984827 None:intergenic 35.0%
TTAGGTAATTTGGCAACACA+TGG + chr1_1:56984820-56984839 Msa0030600:intron 35.0%
!! GATTCTCTTGGGTTGAATAT+AGG + chr1_1:56984952-56984971 Msa0030600:intron 35.0%
AGTAAGTGTTATCTCTAGCT+TGG + chr1_1:56985296-56985315 Msa0030600:intron 35.0%
! TTACCGAGCTTTTCATATTC+CGG - chr1_1:56985452-56985471 None:intergenic 35.0%
CTTGGCAATCAAAACAGATT+TGG - chr1_1:56985489-56985508 None:intergenic 35.0%
!!! CAAATCTGTTTTGATTGCCA+AGG + chr1_1:56985487-56985506 Msa0030600:CDS 35.0%
! AATTTACTGAGCTTGGTAAC+AGG - chr1_1:56985529-56985548 None:intergenic 35.0%
CTGAAACTTTGACATTTACC+AGG + chr1_1:56985635-56985654 Msa0030600:intron 35.0%
AATCTATAACAAATGGACCC+TGG - chr1_1:56985656-56985675 None:intergenic 35.0%
ATCAAGTTCAAGCACAAAGA+TGG - chr1_1:56985878-56985897 None:intergenic 35.0%
!!! TCAAGGTCTTCTCACTTTTT+GGG - chr1_1:56986071-56986090 None:intergenic 35.0%
TGATTTCGGAAAATTCCTGT+AGG + chr1_1:56986182-56986201 Msa0030600:intron 35.0%
GAAAATTCCTGTAGGTTTGA+AGG + chr1_1:56986190-56986209 Msa0030600:intron 35.0%
ACATGTTTGTGTAACTTCCA+AGG + chr1_1:56986327-56986346 Msa0030600:intron 35.0%
GTCTTTGTGATATTTCCGAA+GGG - chr1_1:56986366-56986385 None:intergenic 35.0%
AGTATATGATGCTACAGGAT+GGG - chr1_1:56986388-56986407 None:intergenic 35.0%
AAGTATATGATGCTACAGGA+TGG - chr1_1:56986389-56986408 None:intergenic 35.0%
!! TGCGCAGATTTTGATGATTT+AGG - chr1_1:56986467-56986486 None:intergenic 35.0%
TGTTGAGCATAACTTTAGCA+TGG + chr1_1:56986513-56986532 Msa0030600:intron 35.0%
AATACACAGAAGAGAGAAAG+GGG - chr1_1:56986548-56986567 None:intergenic 35.0%
!! GTAATGGATTTCCTAAACAG+AGG + chr1_1:56986588-56986607 Msa0030600:intron 35.0%
AAACTCAACCAAGACATCTT+TGG - chr1_1:56986711-56986730 None:intergenic 35.0%
CTGCAATGATATCAACTTAC+AGG - chr1_1:56986952-56986971 None:intergenic 35.0%
CGATGTAGTGATTGCAAATT+TGG + chr1_1:56987093-56987112 Msa0030600:CDS 35.0%
ATTTGGATGCCGACAAATAT+AGG + chr1_1:56987110-56987129 Msa0030600:CDS 35.0%
TTTGGATGCCGACAAATATA+GGG + chr1_1:56987111-56987130 Msa0030600:CDS 35.0%
!! CTAAAACTTACTTTTCAGCC+AGG - chr1_1:56987138-56987157 None:intergenic 35.0%
CAATAGAGGTCAGATTGTTT+GGG + chr1_1:56987220-56987239 Msa0030600:intron 35.0%
AATAGAGGTCAGATTGTTTG+GGG + chr1_1:56987221-56987240 Msa0030600:intron 35.0%
TTATGCAGGTATGATGTAAG+TGG + chr1_1:56987441-56987460 Msa0030600:intron 35.0%
ATATAAAAAATTGGCGGCAG+TGG + chr1_1:56987669-56987688 Msa0030600:intron 35.0%
! CGCACTTGATATTTCTGTAT+AGG + chr1_1:56987756-56987775 Msa0030600:intron 35.0%
! CTTGATATTTCTGTATAGGC+TGG + chr1_1:56987760-56987779 Msa0030600:intron 35.0%
TCTCAACTTCCTCTTCAATT+CGG - chr1_1:56987861-56987880 None:intergenic 35.0%
GTAAATCTTCCCGTATCTAA+TGG - chr1_1:56988071-56988090 None:intergenic 35.0%
!! TCTAAGAAGTACTTGGAGAA+AGG + chr1_1:56988100-56988119 Msa0030600:CDS 35.0%
TGCATCAAGTGAAACTTTCA+AGG - chr1_1:56988207-56988226 None:intergenic 35.0%
GCATGAAATGATAAGTTCCT+TGG + chr1_1:56988224-56988243 Msa0030600:intron 35.0%
GACATTGACATCAAAATTGC+TGG + chr1_1:56988559-56988578 Msa0030600:three_prime_UTR 35.0%
TTACAATCTGTTTCCTTCGT+TGG + chr1_1:56988727-56988746 Msa0030600:three_prime_UTR 35.0%
ATAAACTTGTCGCATGAAGA+TGG + chr1_1:56988758-56988777 Msa0030600:three_prime_UTR 35.0%
! CTTTTCTACGTTTAGTCACG+TGG - chr1_1:56984054-56984073 None:intergenic 40.0%
AAATGGAGATGCATCAGATC+TGG + chr1_1:56984173-56984192 Msa0030600:CDS 40.0%
ATGCCTTGTCATAGGTCATT+AGG + chr1_1:56984802-56984821 Msa0030600:intron 40.0%
ATAAATACGACCATGTGCTC+TGG + chr1_1:56984876-56984895 Msa0030600:intron 40.0%
TTTATGCAAACCAGAGCACA+TGG - chr1_1:56984889-56984908 None:intergenic 40.0%
CGTCTCAATGTGATTCTCTT+GGG + chr1_1:56984941-56984960 Msa0030600:intron 40.0%
GTTCTTATTGCGAAGCATGT+TGG + chr1_1:56985574-56985593 Msa0030600:intron 40.0%
! AAGAGTGTGTGCAGCAAATA+TGG + chr1_1:56985996-56986015 Msa0030600:CDS 40.0%
TTGGAAACCACTGAATCGTT+GGG - chr1_1:56986034-56986053 None:intergenic 40.0%
TTTGGAAACCACTGAATCGT+TGG - chr1_1:56986035-56986054 None:intergenic 40.0%
ACGATTCAGTGGTTTCCAAA+AGG + chr1_1:56986035-56986054 Msa0030600:CDS 40.0%
!!! TTGGGTTCTAGAGATCCTTT+TGG - chr1_1:56986053-56986072 None:intergenic 40.0%
!! GTCAAGGTCTTCTCACTTTT+TGG - chr1_1:56986072-56986091 None:intergenic 40.0%
GCTGAGTTTGTAAACACAGA+AGG + chr1_1:56986235-56986254 Msa0030600:CDS 40.0%
GAGTTTGTAAACACAGAAGG+AGG + chr1_1:56986238-56986257 Msa0030600:CDS 40.0%
TTTGTGATATTTCCGAAGGG+TGG - chr1_1:56986363-56986382 None:intergenic 40.0%
GGTCTTTGTGATATTTCCGA+AGG - chr1_1:56986367-56986386 None:intergenic 40.0%
GTAAGTCAAACCCTCTGTTT+AGG - chr1_1:56986602-56986621 None:intergenic 40.0%
! AAACAGAGGGTTTGACTTAC+AGG + chr1_1:56986602-56986621 Msa0030600:intron 40.0%
AGCTGTAGCAATCTTCACAT+TGG - chr1_1:56986630-56986649 None:intergenic 40.0%
ACAACTTCGTTGAAGGTTTC+AGG - chr1_1:56986677-56986696 None:intergenic 40.0%
AACCTTCAACGAAGTTGTCT+TGG + chr1_1:56986679-56986698 Msa0030600:CDS 40.0%
ATCCAAGACAACTTCGTTGA+AGG - chr1_1:56986684-56986703 None:intergenic 40.0%
GGATGAAACCAAAGATGTCT+TGG + chr1_1:56986700-56986719 Msa0030600:CDS 40.0%
!! TGGTTGAGTTTTATGCACCA+TGG + chr1_1:56986720-56986739 Msa0030600:CDS 40.0%
TTCCATGATTGGATGAAACC+AGG - chr1_1:56986847-56986866 None:intergenic 40.0%
! TGCTGCAGTTTTTAAATCGG+AGG + chr1_1:56987069-56987088 Msa0030600:CDS 40.0%
CCAAACAATCTGACCTCTAT+TGG - chr1_1:56987222-56987241 None:intergenic 40.0%
CCAATAGAGGTCAGATTGTT+TGG + chr1_1:56987219-56987238 Msa0030600:intron 40.0%
ATCATGCAGTTTGGTCTAGT+AGG - chr1_1:56987247-56987266 None:intergenic 40.0%
TCTTGCTACATCATGCAGTT+TGG - chr1_1:56987256-56987275 None:intergenic 40.0%
TTTGGGAAGAACTTCAAGGT+AGG - chr1_1:56987471-56987490 None:intergenic 40.0%
TACCTTGAAGTTCTTCCCAA+AGG + chr1_1:56987470-56987489 Msa0030600:CDS 40.0%
ACCTTGAAGTTCTTCCCAAA+GGG + chr1_1:56987471-56987490 Msa0030600:CDS 40.0%
AACAAAGCCGGTGAAGATTA+TGG + chr1_1:56987495-56987514 Msa0030600:CDS 40.0%
AAGAGACTTGGATGACTTTG+TGG + chr1_1:56987524-56987543 Msa0030600:CDS 40.0%
AAAAGGACAGCTTACTTCTG+AGG + chr1_1:56987584-56987603 Msa0030600:CDS 40.0%
TTCTGTATAGGCTGGTATAG+TGG + chr1_1:56987768-56987787 Msa0030600:intron 40.0%
AGACTTGGACGAATTGGTAA+AGG + chr1_1:56987792-56987811 Msa0030600:CDS 40.0%
TGCTGATGACAAAGAGAAGA+AGG + chr1_1:56987825-56987844 Msa0030600:CDS 40.0%
CTCAACTTCCTCTTCAATTC+GGG - chr1_1:56987860-56987879 None:intergenic 40.0%
!!! CCTTTTCAAGTAGTCGTTCT+AGG - chr1_1:56988156-56988175 None:intergenic 40.0%
CCTAGAACGACTACTTGAAA+AGG + chr1_1:56988153-56988172 Msa0030600:CDS 40.0%
TTTCTTGAGGGTCAATTCGT+CGG - chr1_1:56988444-56988463 None:intergenic 40.0%
ATCTCAGGTAAACTACAACG+GGG - chr1_1:56988682-56988701 None:intergenic 40.0%
GATCTCAGGTAAACTACAAC+GGG - chr1_1:56988683-56988702 None:intergenic 40.0%
CGATCTCAGGTAAACTACAA+CGG - chr1_1:56988684-56988703 None:intergenic 40.0%
CCTTCTCAAAAATCGATCTC+AGG - chr1_1:56988697-56988716 None:intergenic 40.0%
!! CCTGAGATCGATTTTTGAGA+AGG + chr1_1:56988694-56988713 Msa0030600:three_prime_UTR 40.0%
!! CTGTTTCCTTCGTTGGTTTA+TGG + chr1_1:56988734-56988753 Msa0030600:three_prime_UTR 40.0%
!!! TTTTAAAACTTGGCTGGGGA+TGG + chr1_1:56988972-56988991 Msa0030600:three_prime_UTR 40.0%
ATAATCAGCACGTGCTGTAG+CGG + chr1_1:56984122-56984141 Msa0030600:five_prime_UTR 45.0%
GCGTCTCAATGTGATTCTCT+TGG + chr1_1:56984940-56984959 Msa0030600:intron 45.0%
! ACACTGCAAAAAGCTTGCTC+CGG + chr1_1:56985430-56985449 Msa0030600:CDS 45.0%
GCTCCGGAATATGAAAAGCT+CGG + chr1_1:56985446-56985465 Msa0030600:CDS 45.0%
! TTGGTAACAGGAAAACCAGG+GGG - chr1_1:56985517-56985536 None:intergenic 45.0%
! CTTGGTAACAGGAAAACCAG+GGG - chr1_1:56985518-56985537 None:intergenic 45.0%
! GCTTGGTAACAGGAAAACCA+GGG - chr1_1:56985519-56985538 None:intergenic 45.0%
! AGCTTGGTAACAGGAAAACC+AGG - chr1_1:56985520-56985539 None:intergenic 45.0%
ATTGCGAAGCATGTTGGTGT+TGG + chr1_1:56985580-56985599 Msa0030600:intron 45.0%
! AATCTCCTCGGTTTGTAGAC+AGG - chr1_1:56985609-56985628 None:intergenic 45.0%
ACACACACACAGAATGCAGA+AGG - chr1_1:56985739-56985758 None:intergenic 45.0%
TACAGCTCCATCTCATGTAG+TGG + chr1_1:56986643-56986662 Msa0030600:CDS 45.0%
GTTAGCACCACTACATGAGA+TGG - chr1_1:56986653-56986672 None:intergenic 45.0%
TTGGTGAGTAGTGAGTACCA+TGG - chr1_1:56986740-56986759 None:intergenic 45.0%
GTCCTGGTTTCATCCAATCA+TGG + chr1_1:56986842-56986861 Msa0030600:intron 45.0%
AGCCAGGTCCCTATATTTGT+CGG - chr1_1:56987122-56987141 None:intergenic 45.0%
AGCTGCAGTTAGTGAAGACT+TGG + chr1_1:56987368-56987387 Msa0030600:intron 45.0%
TGCAGTTAGTGAAGACTTGG+AGG + chr1_1:56987371-56987390 Msa0030600:intron 45.0%
AGTTAGTGAAGACTTGGAGG+TGG + chr1_1:56987374-56987393 Msa0030600:intron 45.0%
AAAGCCGGTGAAGATTATGG+AGG + chr1_1:56987498-56987517 Msa0030600:CDS 45.0%
TCCACCTCCATAATCTTCAC+CGG - chr1_1:56987505-56987524 None:intergenic 45.0%
TTATGGAGGTGGAAGAGACT+TGG + chr1_1:56987512-56987531 Msa0030600:CDS 45.0%
GGAACAAGTCGAGATGCAAA+AGG + chr1_1:56987567-56987586 Msa0030600:CDS 45.0%
AGTGGAAGACTTGGACGAAT+TGG + chr1_1:56987786-56987805 Msa0030600:CDS 45.0%
CTCTTCAATTCGGGCAAACA+CGG - chr1_1:56987851-56987870 None:intergenic 45.0%
AGAGGAAGTTGAGAAGCTCA+AGG + chr1_1:56987867-56987886 Msa0030600:CDS 45.0%
GAGGAAGTTGAGAAGCTCAA+GGG + chr1_1:56987868-56987887 Msa0030600:CDS 45.0%
GCAATTTCTACCATCGATCC+TGG + chr1_1:56988497-56988516 Msa0030600:three_prime_UTR 45.0%
! TTGCTGGGAGATTTTCAACG+TGG + chr1_1:56988575-56988594 Msa0030600:three_prime_UTR 45.0%
!!! ATTTTTTTCATATAAAAAAT+TGG + chr1_1:56987660-56987679 Msa0030600:intron 5.0%
!!! TTTTACAAATTTTAATTATT+TGG + chr1_1:56988309-56988328 Msa0030600:intron 5.0%
ATCAGTTTCAGCAGACGACG+TGG + chr1_1:56984240-56984259 Msa0030600:CDS 50.0%
GGATACCTGTCTACAAACCG+AGG + chr1_1:56985601-56985620 Msa0030600:intron 50.0%
AAGTAAAGGCGGAGGAGAGT+TGG + chr1_1:56985814-56985833 Msa0030600:intron 50.0%
TGCAGCAAATATGGCGTCTC+TGG + chr1_1:56986005-56986024 Msa0030600:CDS 50.0%
GCAGCAAATATGGCGTCTCT+GGG + chr1_1:56986006-56986025 Msa0030600:CDS 50.0%
AGGGTGGCACTATGTTTCCT+TGG - chr1_1:56986347-56986366 None:intergenic 50.0%
GGAAACATAGTGCCACCCTT+CGG + chr1_1:56986348-56986367 Msa0030600:intron 50.0%
TGCCGACAAATATAGGGACC+TGG + chr1_1:56987117-56987136 Msa0030600:CDS 50.0%
! GCCCTTTGGGAAGAACTTCA+AGG - chr1_1:56987475-56987494 None:intergenic 50.0%
TTCCCAAAGGGCAACAAAGC+CGG + chr1_1:56987483-56987502 Msa0030600:CDS 50.0%
AAAATTGGCGGCAGTGGACA+TGG + chr1_1:56987675-56987694 Msa0030600:intron 50.0%
! GGCTGGTATAGTGGAAGACT+TGG + chr1_1:56987777-56987796 Msa0030600:intron 50.0%
CGTGTTTGCCCGAATTGAAG+AGG + chr1_1:56987849-56987868 Msa0030600:CDS 50.0%
AGCTCAAGGGTTCTGCTTCT+AGG + chr1_1:56987881-56987900 Msa0030600:CDS 50.0%
TCAATTCGTCGGCCTTAGCA+GGG - chr1_1:56988433-56988452 None:intergenic 50.0%
! ACACTAGCTTCCAGGATCGA+TGG - chr1_1:56988510-56988529 None:intergenic 50.0%
TCATCACAAGGAGCTGCAGT+GGG - chr1_1:56988533-56988552 None:intergenic 50.0%
TTCATCACAAGGAGCTGCAG+TGG - chr1_1:56988534-56988553 None:intergenic 50.0%
GGCTGGGGATGGTCTAATTT+AGG + chr1_1:56988983-56989002 Msa0030600:three_prime_UTR 50.0%
TCGTTGAGTTCTACGCCCCT+TGG + chr1_1:56984317-56984336 Msa0030600:CDS 55.0%
GAGGAGAGTTGGACCATCCT+GGG + chr1_1:56985825-56985844 Msa0030600:intron 55.0%
CTGGGTACCCAACGATTCAG+TGG + chr1_1:56986024-56986043 Msa0030600:CDS 55.0%
GCAAGTGATTCTGCAGTGCG+TGG - chr1_1:56986217-56986236 None:intergenic 55.0%
!! CACCGGCTTTGTTGCCCTTT+GGG - chr1_1:56987488-56987507 None:intergenic 55.0%
!! TCACCGGCTTTGTTGCCCTT+TGG - chr1_1:56987489-56987508 None:intergenic 55.0%
GCCGGTGAAGATTATGGAGG+TGG + chr1_1:56987501-56987520 Msa0030600:CDS 55.0%
GCAGTGGACATGGTGGCTTT+GGG + chr1_1:56987685-56987704 Msa0030600:intron 55.0%
! CAGTGGACATGGTGGCTTTG+GGG + chr1_1:56987686-56987705 Msa0030600:intron 55.0%
GCAGTCTATCAGCCCTGCTA+AGG + chr1_1:56988418-56988437 Msa0030600:intron 55.0%
GTCAATTCGTCGGCCTTAGC+AGG - chr1_1:56988434-56988453 None:intergenic 55.0%
GAAAACCAGGGGGCTGACCT+TGG - chr1_1:56985507-56985526 None:intergenic 60.0%
GGAGGAGAGTTGGACCATCC+TGG + chr1_1:56985824-56985843 Msa0030600:intron 60.0%
GCGTGGCCCTTCAAACCTAC+AGG - chr1_1:56986200-56986219 None:intergenic 60.0%
ATTGGCGGCAGTGGACATGG+TGG + chr1_1:56987678-56987697 Msa0030600:intron 60.0%
GGCAGTGGACATGGTGGCTT+TGG + chr1_1:56987684-56987703 Msa0030600:intron 60.0%
!! TGGACATGGTGGCTTTGGGG+TGG + chr1_1:56987689-56987708 Msa0030600:intron 60.0%
!! GGACATGGTGGCTTTGGGGT+GGG + chr1_1:56987690-56987709 Msa0030600:intron 60.0%
!! GGTGGCTTTGGGGTGGGATA+AGG + chr1_1:56987696-56987715 Msa0030600:intron 60.0%
! GCAGTGGGACACTAGCTTCC+AGG - chr1_1:56988518-56988537 None:intergenic 60.0%
GATTGCCAAGGTCAGCCCCC+TGG + chr1_1:56985499-56985518 Msa0030600:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56984016 56989012 56984016 ID=Msa0030600;Name=Msa0030600
chr1_1 mRNA 56984016 56989012 56984016 ID=Msa0030600-mRNA-1;Parent=Msa0030600;Name=Msa0030600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|1|1|11|525|364
chr1_1 exon 56984016 56984338 56984016 ID=Msa0030600-mRNA-1:exon:17115;Parent=Msa0030600-mRNA-1
chr1_1 exon 56985424 56985508 56985424 ID=Msa0030600-mRNA-1:exon:17116;Parent=Msa0030600-mRNA-1
chr1_1 exon 56985978 56986075 56985978 ID=Msa0030600-mRNA-1:exon:17117;Parent=Msa0030600-mRNA-1
chr1_1 exon 56986204 56986259 56986204 ID=Msa0030600-mRNA-1:exon:17118;Parent=Msa0030600-mRNA-1
chr1_1 exon 56986624 56986741 56986624 ID=Msa0030600-mRNA-1:exon:17119;Parent=Msa0030600-mRNA-1
chr1_1 exon 56986924 56986951 56986924 ID=Msa0030600-mRNA-1:exon:17120;Parent=Msa0030600-mRNA-1
chr1_1 exon 56987055 56987146 56987055 ID=Msa0030600-mRNA-1:exon:17121;Parent=Msa0030600-mRNA-1
chr1_1 exon 56987449 56987605 56987449 ID=Msa0030600-mRNA-1:exon:17122;Parent=Msa0030600-mRNA-1
chr1_1 exon 56987778 56987902 56987778 ID=Msa0030600-mRNA-1:exon:17123;Parent=Msa0030600-mRNA-1
chr1_1 exon 56988075 56988174 56988075 ID=Msa0030600-mRNA-1:exon:17124;Parent=Msa0030600-mRNA-1
chr1_1 exon 56988422 56989012 56988422 ID=Msa0030600-mRNA-1:exon:17125;Parent=Msa0030600-mRNA-1
chr1_1 five_prime_UTR 56984016 56984168 56984016 ID=Msa0030600-mRNA-1:five_prime_utr;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56984169 56984338 56984169 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56985424 56985508 56985424 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56985978 56986075 56985978 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56986204 56986259 56986204 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56986624 56986741 56986624 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56986924 56986951 56986924 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56987055 56987146 56987055 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56987449 56987605 56987449 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56987778 56987902 56987778 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56988075 56988174 56988075 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 CDS 56988422 56988487 56988422 ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1
chr1_1 three_prime_UTR 56988488 56989012 56988488 ID=Msa0030600-mRNA-1:three_prime_utr;Parent=Msa0030600-mRNA-1
Gene Sequence

>Msa0030600

ATGAAAATGGAGATGCATCAGATCTGGAGCAGAATAGCATTAGCATCGTTCGCGTTTGCAATTCTATTAGTATCAGTTTCAGCAGACGACGTGGTTGTGCTGACTGAAGAAAATTTCGAGAAGGAAGTTGGTCAAGATAAAGGAGCTCTCGTTGAGTTCTACGCCCCTTGGTGTGGACACTGCAAAAAGCTTGCTCCGGAATATGAAAAGCTCGGTAACAGCTTCAAGAAAGCCAAATCTGTTTTGATTGCCAAGGTGGACTGTGATGAGCATAAGAGTGTGTGCAGCAAATATGGCGTCTCTGGGTACCCAACGATTCAGTGGTTTCCAAAAGGATCTCTAGAACCCAAAAAGTTTGAAGGGCCACGCACTGCAGAATCACTTGCTGAGTTTGTAAACACAGAAGGAGGAACCAATGTGAAGATTGCTACAGCTCCATCTCATGTAGTGGTGCTAACACCTGAAACCTTCAACGAAGTTGTCTTGGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCATGGTGTGGACATTGCAAAAGTCTTGCTCCTATTTATGAAAAAGTTGCTGCAGTTTTTAAATCGGAGGACGATGTAGTGATTGCAAATTTGGATGCCGACAAATATAGGGACCTGGCTGAAAAGTATGATGTAAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCCGGTGAAGATTATGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGCAAAAGGACAGCTTACTTCTGAGGCTGGTATAGTGGAAGACTTGGACGAATTGGTAAAGGAGTTTGTAGCTGCTGATGACAAAGAGAAGAAGGCCGTGTTTGCCCGAATTGAAGAGGAAGTTGAGAAGCTCAAGGGTTCTGCTTCTAGATACGGGAAGATTTACCTGAAAGTTTCTAAGAAGTACTTGGAGAAAGGTTCTGATTATGCTAAGAATGAAATTCAACGCCTAGAACGACTACTTGAAAAGTCTATCAGCCCTGCTAAGGCCGACGAATTGACCCTCAAGAAAAACATATTGTCTACATATGCTTGA

Protein sequence

>Msa0030600

MKMEMHQIWSRIALASFAFAILLVSVSADDVVVLTEENFEKEVGQDKGALVEFYAPWCGHCKKLAPEYEKLGNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVNTEGGTNVKIATAPSHVVVLTPETFNEVVLDETKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAADDKEKKAVFARIEEEVEKLKGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTYA*