Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030600 | sp|P38661|PDIA6_MEDSA | 97.802 | 364 | 8 | 0 | 1 | 364 | 1 | 364 | 0.0 | 722 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030600 | G7IDU4 | 98.626 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 0.0 | 728 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030600 | Msa0138700 | 0.963490 | 3.784868e-122 | -8.615850e-47 |
Msa0030600 | Msa0174550 | 0.973308 | 3.291691e-136 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030600 | MtrunA17_Chr1g0194961 | 98.626 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 0.0 | 728 |
Msa0030600 | MtrunA17_Chr7g0271721 | 68.820 | 356 | 107 | 1 | 8 | 363 | 3 | 354 | 0.0 | 518 |
Msa0030600 | MtrunA17_Chr5g0438731 | 33.829 | 269 | 153 | 6 | 10 | 258 | 36 | 299 | 2.35e-40 | 148 |
Msa0030600 | MtrunA17_Chr5g0438731 | 40.741 | 135 | 72 | 4 | 27 | 159 | 188 | 316 | 3.04e-20 | 91.7 |
Msa0030600 | MtrunA17_Chr2g0287471 | 50.000 | 104 | 49 | 2 | 147 | 250 | 28 | 128 | 6.41e-24 | 100 |
Msa0030600 | MtrunA17_Chr2g0287471 | 38.583 | 127 | 70 | 4 | 10 | 131 | 5 | 128 | 1.34e-17 | 83.2 |
Msa0030600 | MtrunA17_Chr2g0326581 | 35.616 | 219 | 119 | 8 | 31 | 234 | 290 | 501 | 8.57e-24 | 102 |
Msa0030600 | MtrunA17_Chr2g0326581 | 37.209 | 172 | 88 | 4 | 30 | 200 | 79 | 231 | 4.60e-19 | 88.6 |
Msa0030600 | MtrunA17_Chr2g0326581 | 38.857 | 175 | 90 | 7 | 149 | 315 | 80 | 245 | 9.26e-18 | 84.7 |
Msa0030600 | MtrunA17_Chr2g0326581 | 34.483 | 116 | 71 | 3 | 30 | 142 | 417 | 530 | 2.11e-14 | 74.3 |
Msa0030600 | MtrunA17_Chr1g0200731 | 40.000 | 120 | 69 | 2 | 31 | 149 | 95 | 212 | 3.67e-22 | 97.4 |
Msa0030600 | MtrunA17_Chr3g0124851 | 46.602 | 103 | 54 | 1 | 149 | 251 | 379 | 480 | 4.86e-22 | 97.4 |
Msa0030600 | MtrunA17_Chr3g0124851 | 47.872 | 94 | 46 | 2 | 168 | 258 | 53 | 146 | 1.01e-20 | 93.6 |
Msa0030600 | MtrunA17_Chr3g0124851 | 41.818 | 110 | 61 | 2 | 31 | 137 | 35 | 144 | 3.50e-20 | 91.7 |
Msa0030600 | MtrunA17_Chr3g0124851 | 41.860 | 86 | 49 | 1 | 47 | 132 | 396 | 480 | 9.65e-16 | 78.6 |
Msa0030600 | MtrunA17_Chr4g0029181 | 44.318 | 88 | 47 | 1 | 149 | 236 | 440 | 525 | 5.76e-18 | 85.5 |
Msa0030600 | MtrunA17_Chr4g0029181 | 38.636 | 132 | 77 | 3 | 26 | 156 | 97 | 225 | 1.60e-16 | 80.9 |
Msa0030600 | MtrunA17_Chr4g0029181 | 43.885 | 139 | 66 | 5 | 149 | 279 | 102 | 236 | 2.37e-16 | 80.5 |
Msa0030600 | MtrunA17_Chr4g0029181 | 34.259 | 108 | 62 | 4 | 30 | 132 | 439 | 542 | 1.54e-12 | 68.9 |
Msa0030600 | MtrunA17_Chr2g0326241 | 33.884 | 121 | 77 | 3 | 18 | 136 | 27 | 146 | 6.75e-15 | 71.6 |
Msa0030600 | MtrunA17_Chr2g0326241 | 29.524 | 105 | 73 | 1 | 147 | 251 | 39 | 142 | 5.19e-11 | 60.8 |
Msa0030600 | MtrunA17_Chr4g0041801 | 33.913 | 115 | 62 | 2 | 34 | 134 | 146 | 260 | 6.89e-15 | 75.9 |
Msa0030600 | MtrunA17_Chr4g0041801 | 30.851 | 94 | 51 | 2 | 169 | 248 | 162 | 255 | 4.34e-11 | 63.9 |
Msa0030600 | MtrunA17_Chr1g0211871 | 39.535 | 86 | 46 | 2 | 157 | 242 | 78 | 157 | 1.90e-13 | 68.2 |
Msa0030600 | MtrunA17_Chr1g0201781 | 32.258 | 93 | 60 | 2 | 156 | 248 | 69 | 158 | 3.89e-13 | 67.0 |
Msa0030600 | MtrunA17_Chr1g0201781 | 36.082 | 97 | 55 | 4 | 46 | 141 | 78 | 168 | 7.99e-11 | 60.5 |
Msa0030600 | MtrunA17_Chr3g0125821 | 35.955 | 89 | 55 | 1 | 145 | 233 | 66 | 152 | 1.24e-12 | 65.9 |
Msa0030600 | MtrunA17_Chr2g0331681 | 34.513 | 113 | 70 | 3 | 34 | 144 | 67 | 177 | 1.33e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030600 | AT2G47470.1 | 78.788 | 330 | 70 | 0 | 34 | 363 | 28 | 357 | 0.0 | 547 |
Msa0030600 | AT2G47470.4 | 73.939 | 330 | 60 | 1 | 34 | 363 | 28 | 331 | 7.40e-178 | 497 |
Msa0030600 | AT2G47470.3 | 80.576 | 278 | 54 | 0 | 34 | 311 | 28 | 305 | 5.20e-168 | 472 |
Msa0030600 | AT2G47470.2 | 81.590 | 239 | 44 | 0 | 34 | 272 | 28 | 266 | 7.07e-147 | 416 |
Msa0030600 | AT1G04980.1 | 34.364 | 291 | 151 | 7 | 27 | 297 | 30 | 300 | 3.00e-42 | 153 |
Msa0030600 | AT2G32920.1 | 33.681 | 288 | 154 | 7 | 27 | 297 | 28 | 295 | 1.46e-41 | 151 |
Msa0030600 | AT5G60640.3 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 9.04e-23 | 100 |
Msa0030600 | AT5G60640.3 | 46.591 | 88 | 45 | 1 | 149 | 236 | 379 | 464 | 1.05e-19 | 90.9 |
Msa0030600 | AT5G60640.3 | 34.028 | 144 | 86 | 4 | 29 | 167 | 377 | 516 | 1.87e-14 | 75.1 |
Msa0030600 | AT5G60640.2 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 1.06e-22 | 99.8 |
Msa0030600 | AT5G60640.2 | 34.921 | 189 | 104 | 8 | 62 | 236 | 345 | 528 | 7.45e-22 | 97.4 |
Msa0030600 | AT5G60640.1 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 1.12e-22 | 99.8 |
Msa0030600 | AT5G60640.1 | 34.375 | 192 | 107 | 8 | 59 | 236 | 342 | 528 | 8.48e-22 | 97.4 |
Msa0030600 | AT1G21750.2 | 47.826 | 92 | 45 | 2 | 168 | 256 | 50 | 141 | 7.92e-21 | 94.0 |
Msa0030600 | AT1G21750.2 | 34.752 | 141 | 77 | 4 | 12 | 137 | 1 | 141 | 1.10e-20 | 93.6 |
Msa0030600 | AT1G21750.2 | 41.748 | 103 | 59 | 1 | 149 | 251 | 376 | 477 | 2.02e-18 | 87.0 |
Msa0030600 | AT1G21750.2 | 38.739 | 111 | 57 | 2 | 22 | 132 | 378 | 477 | 4.82e-15 | 76.6 |
Msa0030600 | AT1G21750.1 | 41.284 | 109 | 63 | 1 | 149 | 257 | 376 | 483 | 8.05e-21 | 94.0 |
Msa0030600 | AT1G21750.1 | 47.826 | 92 | 45 | 2 | 168 | 256 | 50 | 141 | 1.01e-20 | 93.6 |
Msa0030600 | AT1G21750.1 | 34.752 | 141 | 77 | 4 | 12 | 137 | 1 | 141 | 1.26e-20 | 93.6 |
Msa0030600 | AT1G21750.1 | 37.607 | 117 | 62 | 2 | 22 | 138 | 378 | 483 | 2.07e-15 | 77.8 |
Msa0030600 | AT3G54960.1 | 34.043 | 188 | 111 | 6 | 58 | 234 | 337 | 522 | 9.95e-21 | 94.0 |
Msa0030600 | AT3G54960.1 | 34.637 | 179 | 97 | 5 | 23 | 200 | 93 | 252 | 1.75e-18 | 87.4 |
Msa0030600 | AT3G54960.1 | 34.028 | 144 | 89 | 4 | 30 | 169 | 438 | 579 | 1.91e-14 | 75.1 |
Msa0030600 | AT3G54960.1 | 31.429 | 175 | 103 | 6 | 149 | 315 | 101 | 266 | 2.62e-14 | 74.7 |
Msa0030600 | AT1G77510.1 | 37.190 | 121 | 75 | 1 | 149 | 269 | 374 | 493 | 2.24e-20 | 92.8 |
Msa0030600 | AT1G77510.1 | 35.714 | 126 | 77 | 3 | 31 | 152 | 31 | 156 | 1.28e-18 | 87.4 |
Msa0030600 | AT1G77510.1 | 35.338 | 133 | 76 | 4 | 149 | 272 | 31 | 162 | 1.72e-18 | 87.0 |
Msa0030600 | AT1G77510.1 | 38.739 | 111 | 57 | 2 | 22 | 132 | 376 | 475 | 1.54e-15 | 78.2 |
Msa0030600 | AT3G54960.2 | 34.637 | 179 | 97 | 5 | 23 | 200 | 93 | 252 | 1.14e-18 | 87.8 |
Msa0030600 | AT3G54960.2 | 32.911 | 158 | 95 | 5 | 61 | 207 | 340 | 497 | 4.90e-15 | 76.6 |
Msa0030600 | AT3G54960.2 | 31.429 | 175 | 103 | 6 | 149 | 315 | 101 | 266 | 1.78e-14 | 75.1 |
Msa0030600 | AT1G07960.4 | 37.383 | 107 | 65 | 2 | 30 | 135 | 26 | 131 | 6.85e-17 | 77.4 |
Msa0030600 | AT1G07960.4 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.87e-16 | 75.1 |
Msa0030600 | AT1G07960.3 | 37.383 | 107 | 65 | 2 | 30 | 135 | 26 | 131 | 6.85e-17 | 77.4 |
Msa0030600 | AT1G07960.3 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.87e-16 | 75.1 |
Msa0030600 | AT1G07960.1 | 37.383 | 107 | 65 | 2 | 30 | 135 | 26 | 131 | 6.85e-17 | 77.4 |
Msa0030600 | AT1G07960.1 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.87e-16 | 75.1 |
Msa0030600 | AT1G07960.2 | 37.383 | 107 | 65 | 2 | 30 | 135 | 26 | 131 | 6.85e-17 | 77.4 |
Msa0030600 | AT1G07960.2 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.87e-16 | 75.1 |
Msa0030600 | AT1G35620.1 | 31.667 | 120 | 79 | 2 | 31 | 149 | 34 | 151 | 2.52e-15 | 77.4 |
Msa0030600 | AT1G35620.1 | 36.496 | 137 | 70 | 6 | 149 | 283 | 34 | 155 | 3.95e-14 | 73.6 |
Msa0030600 | AT4G27080.1 | 34.454 | 119 | 64 | 2 | 28 | 132 | 140 | 258 | 1.35e-13 | 72.4 |
Msa0030600 | AT4G27080.2 | 34.454 | 119 | 64 | 2 | 28 | 132 | 192 | 310 | 1.58e-13 | 72.0 |
Msa0030600 | AT2G01270.1 | 33.577 | 137 | 70 | 5 | 24 | 139 | 30 | 166 | 6.05e-13 | 70.1 |
Msa0030600 | AT1G43560.1 | 32.979 | 94 | 60 | 2 | 155 | 248 | 66 | 156 | 1.11e-12 | 65.9 |
Msa0030600 | AT1G76760.1 | 33.766 | 77 | 49 | 1 | 155 | 231 | 71 | 145 | 1.02e-11 | 63.5 |
Msa0030600 | AT1G52260.1 | 34.021 | 97 | 61 | 2 | 161 | 256 | 90 | 184 | 2.17e-11 | 65.5 |
Msa0030600 | AT3G20560.1 | 30.769 | 169 | 87 | 7 | 29 | 181 | 141 | 295 | 2.18e-11 | 65.5 |
Msa0030600 | AT1G15020.3 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 7.46e-11 | 63.9 |
Msa0030600 | AT1G15020.1 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 7.46e-11 | 63.9 |
Msa0030600 | AT1G15020.2 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 7.53e-11 | 63.9 |
Find 96 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATATTATAGAACAATTT+TGG | 0.055828 | 1_1:+56988635 | Msa0030600:three_prime_UTR |
CTGTTTCCTTCGTTGGTTTA+TGG | 0.147838 | 1_1:+56988734 | Msa0030600:three_prime_UTR |
ACAACTTCGTTGAAGGTTTC+AGG | 0.182439 | 1_1:-56986674 | None:intergenic |
CGATGTAGTGATTGCAAATT+TGG | 0.193790 | 1_1:+56987093 | Msa0030600:CDS |
AGTACTTCTTAGAAACTTTC+AGG | 0.203871 | 1_1:-56988090 | None:intergenic |
GGCTGGGGATGGTCTAATTT+AGG | 0.240134 | 1_1:+56988983 | Msa0030600:three_prime_UTR |
CACCGGCTTTGTTGCCCTTT+GGG | 0.256628 | 1_1:-56987485 | None:intergenic |
CTCAACTTCCTCTTCAATTC+GGG | 0.267301 | 1_1:-56987857 | None:intergenic |
CAGAAAGAAGAAGATGAAAA+TGG | 0.277955 | 1_1:+56984156 | Msa0030600:exon |
TATAATTAATCAACGAATAA+AGG | 0.281432 | 1_1:-56988867 | None:intergenic |
ATTTGGATGCCGACAAATAT+AGG | 0.282633 | 1_1:+56987110 | Msa0030600:CDS |
TCTACATATGCTTGACTTAA+CGG | 0.295936 | 1_1:+56988473 | Msa0030600:exon |
TCATCTTCTTCTTTCTGTTT+CGG | 0.296011 | 1_1:-56984150 | None:intergenic |
CTTGGCAATCAAAACAGATT+TGG | 0.298806 | 1_1:-56985486 | None:intergenic |
TCACCGGCTTTGTTGCCCTT+TGG | 0.302925 | 1_1:-56987486 | None:intergenic |
AAGAGTGTGTGCAGCAAATA+TGG | 0.310178 | 1_1:+56985996 | Msa0030600:CDS |
TCTCAACTTCCTCTTCAATT+CGG | 0.333016 | 1_1:-56987858 | None:intergenic |
AAACTCAACCAAGACATCTT+TGG | 0.333568 | 1_1:-56986708 | None:intergenic |
GACATTGACATCAAAATTGC+TGG | 0.343255 | 1_1:+56988559 | Msa0030600:three_prime_UTR |
TGCAGCAAATATGGCGTCTC+TGG | 0.357109 | 1_1:+56986005 | Msa0030600:CDS |
CCAAAATTGTTCTATAATAT+AGG | 0.359717 | 1_1:-56988635 | None:intergenic |
GTCAATTCGTCGGCCTTAGC+AGG | 0.363199 | 1_1:-56988431 | None:intergenic |
AACAAAGCCGGTGAAGATTA+TGG | 0.369872 | 1_1:+56987495 | Msa0030600:CDS |
TTGGGTTCTAGAGATCCTTT+TGG | 0.375047 | 1_1:-56986050 | None:intergenic |
GCAGTGGGACACTAGCTTCC+AGG | 0.391290 | 1_1:-56988515 | None:intergenic |
TTTGGATGCCGACAAATATA+GGG | 0.392085 | 1_1:+56987111 | Msa0030600:CDS |
AAGGAAGTTGGTCAAGATAA+AGG | 0.392677 | 1_1:+56984289 | Msa0030600:CDS |
TTAATACATGACAACTACTA+TGG | 0.401254 | 1_1:+56988781 | Msa0030600:three_prime_UTR |
AAGAGACTTGGATGACTTTG+TGG | 0.405410 | 1_1:+56987524 | Msa0030600:CDS |
AGCTCAAGGGTTCTGCTTCT+AGG | 0.408451 | 1_1:+56987881 | Msa0030600:CDS |
GATCTCAGGTAAACTACAAC+GGG | 0.409396 | 1_1:-56988680 | None:intergenic |
AGTGGAAGACTTGGACGAAT+TGG | 0.413484 | 1_1:+56987786 | Msa0030600:CDS |
AGCCAGGTCCCTATATTTGT+CGG | 0.426037 | 1_1:-56987119 | None:intergenic |
ATCCAAGACAACTTCGTTGA+AGG | 0.433274 | 1_1:-56986681 | None:intergenic |
GAAAATTTCGAGAAGGAAGT+TGG | 0.442730 | 1_1:+56984277 | Msa0030600:CDS |
TTACAATCTGTTTCCTTCGT+TGG | 0.446112 | 1_1:+56988727 | Msa0030600:three_prime_UTR |
AACCTTCAACGAAGTTGTCT+TGG | 0.447834 | 1_1:+56986679 | Msa0030600:CDS |
GAAAATTCCTGTAGGTTTGA+AGG | 0.449227 | 1_1:+56986190 | Msa0030600:intron |
TCTAAGAAGTACTTGGAGAA+AGG | 0.455359 | 1_1:+56988100 | Msa0030600:CDS |
TTATGGAGGTGGAAGAGACT+TGG | 0.456654 | 1_1:+56987512 | Msa0030600:CDS |
GAAAGTTTCTAAGAAGTACT+TGG | 0.456740 | 1_1:+56988093 | Msa0030600:CDS |
TTCCCAAAGGGCAACAAAGC+CGG | 0.473546 | 1_1:+56987483 | Msa0030600:CDS |
GCAATTTCTACCATCGATCC+TGG | 0.474691 | 1_1:+56988497 | Msa0030600:three_prime_UTR |
ACGATAGTTAATGCATCATA+AGG | 0.475630 | 1_1:+56988820 | Msa0030600:three_prime_UTR |
AAATGGAGATGCATCAGATC+TGG | 0.477555 | 1_1:+56984173 | Msa0030600:CDS |
CCTAGAACGACTACTTGAAA+AGG | 0.487467 | 1_1:+56988153 | Msa0030600:CDS |
TTCTGTATAGGCTGGTATAG+TGG | 0.489871 | 1_1:+56987768 | Msa0030600:intron |
TTTCTTGAGGGTCAATTCGT+CGG | 0.493083 | 1_1:-56988441 | None:intergenic |
TTGGAAACCACTGAATCGTT+GGG | 0.493402 | 1_1:-56986031 | None:intergenic |
TTTGGAAACCACTGAATCGT+TGG | 0.494227 | 1_1:-56986032 | None:intergenic |
GCCCTTTGGGAAGAACTTCA+AGG | 0.495998 | 1_1:-56987472 | None:intergenic |
ACCTTGAAGTTCTTCCCAAA+GGG | 0.499568 | 1_1:+56987471 | Msa0030600:CDS |
GCCGGTGAAGATTATGGAGG+TGG | 0.503383 | 1_1:+56987501 | Msa0030600:CDS |
TTATGCAGGTATGATGTAAG+TGG | 0.507495 | 1_1:+56987441 | Msa0030600:intron |
ACGATTCAGTGGTTTCCAAA+AGG | 0.517733 | 1_1:+56986035 | Msa0030600:CDS |
CTCTTCAATTCGGGCAAACA+CGG | 0.519231 | 1_1:-56987848 | None:intergenic |
TACCTTGAAGTTCTTCCCAA+AGG | 0.520489 | 1_1:+56987470 | Msa0030600:CDS |
TCCACCTCCATAATCTTCAC+CGG | 0.524594 | 1_1:-56987502 | None:intergenic |
ATAAACTTGTCGCATGAAGA+TGG | 0.526846 | 1_1:+56988758 | Msa0030600:three_prime_UTR |
GGATGAAACCAAAGATGTCT+TGG | 0.528319 | 1_1:+56986700 | Msa0030600:CDS |
GGCTGGTATAGTGGAAGACT+TGG | 0.534298 | 1_1:+56987777 | Msa0030600:intron |
ACATTGACATCAAAATTGCT+GGG | 0.538476 | 1_1:+56988560 | Msa0030600:three_prime_UTR |
TCGTTGAGTTCTACGCCCCT+TGG | 0.544107 | 1_1:+56984317 | Msa0030600:CDS |
TGCTGATGACAAAGAGAAGA+AGG | 0.546178 | 1_1:+56987825 | Msa0030600:CDS |
AAAATTCCTGTAGGTTTGAA+GGG | 0.547840 | 1_1:+56986191 | Msa0030600:intron |
GCAGTCTATCAGCCCTGCTA+AGG | 0.553095 | 1_1:+56988418 | Msa0030600:intron |
GGAACAAGTCGAGATGCAAA+AGG | 0.557736 | 1_1:+56987567 | Msa0030600:CDS |
CGTGTTTGCCCGAATTGAAG+AGG | 0.560187 | 1_1:+56987849 | Msa0030600:CDS |
AGACTTGGACGAATTGGTAA+AGG | 0.570577 | 1_1:+56987792 | Msa0030600:CDS |
TCAATTCGTCGGCCTTAGCA+GGG | 0.573157 | 1_1:-56988430 | None:intergenic |
CAACTACTATGGTTAATACA+AGG | 0.573319 | 1_1:+56988792 | Msa0030600:three_prime_UTR |
TACAGCTCCATCTCATGTAG+TGG | 0.576987 | 1_1:+56986643 | Msa0030600:CDS |
GCAGCAAATATGGCGTCTCT+GGG | 0.581952 | 1_1:+56986006 | Msa0030600:CDS |
TTCATCACAAGGAGCTGCAG+TGG | 0.584092 | 1_1:-56988531 | None:intergenic |
CTGGGTACCCAACGATTCAG+TGG | 0.589603 | 1_1:+56986024 | Msa0030600:CDS |
GCTGAGTTTGTAAACACAGA+AGG | 0.589800 | 1_1:+56986235 | Msa0030600:CDS |
AGAGGAAGTTGAGAAGCTCA+AGG | 0.591148 | 1_1:+56987867 | Msa0030600:CDS |
GTTAGCACCACTACATGAGA+TGG | 0.595533 | 1_1:-56986650 | None:intergenic |
GACTGAAGAAAATTTCGAGA+AGG | 0.599089 | 1_1:+56984270 | Msa0030600:CDS |
ATAATCAGCACGTGCTGTAG+CGG | 0.600017 | 1_1:+56984122 | Msa0030600:five_prime_UTR |
AAAAGGACAGCTTACTTCTG+AGG | 0.602957 | 1_1:+56987584 | Msa0030600:CDS |
GAGGAAGTTGAGAAGCTCAA+GGG | 0.606083 | 1_1:+56987868 | Msa0030600:CDS |
TGCCGACAAATATAGGGACC+TGG | 0.607166 | 1_1:+56987117 | Msa0030600:CDS |
AGCTGTAGCAATCTTCACAT+TGG | 0.611470 | 1_1:-56986627 | None:intergenic |
ACACTAGCTTCCAGGATCGA+TGG | 0.613295 | 1_1:-56988507 | None:intergenic |
GCTCCGGAATATGAAAAGCT+CGG | 0.615790 | 1_1:+56985446 | Msa0030600:CDS |
TTTGGGAAGAACTTCAAGGT+AGG | 0.618623 | 1_1:-56987468 | None:intergenic |
GCAAGTGATTCTGCAGTGCG+TGG | 0.619080 | 1_1:-56986214 | None:intergenic |
CGATCTCAGGTAAACTACAA+CGG | 0.625933 | 1_1:-56988681 | None:intergenic |
TCATCACAAGGAGCTGCAGT+GGG | 0.644752 | 1_1:-56988530 | None:intergenic |
ATCAGTTTCAGCAGACGACG+TGG | 0.654164 | 1_1:+56984240 | Msa0030600:CDS |
TTTATACCATAAACCAACGA+AGG | 0.674319 | 1_1:-56988740 | None:intergenic |
GAGTTTGTAAACACAGAAGG+AGG | 0.682221 | 1_1:+56986238 | Msa0030600:CDS |
AATGTCAAACATTCATCACA+AGG | 0.685008 | 1_1:-56988542 | None:intergenic |
AAAGCCGGTGAAGATTATGG+AGG | 0.748922 | 1_1:+56987498 | Msa0030600:CDS |
ATCTCAGGTAAACTACAACG+GGG | 0.830776 | 1_1:-56988679 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTATCAAAACTAAATTT+CGG | - | chr1_1:56984513-56984532 | None:intergenic | 10.0% |
!!! | TAGTTTTGATAATTAAATTA+AGG | + | chr1_1:56984518-56984537 | Msa0030600:intron | 10.0% |
!! | CAAAATTAATGATTAAAAAA+TGG | - | chr1_1:56986777-56986796 | None:intergenic | 10.0% |
!!! | TTATACTCTTTTAATAGATA+AGG | + | chr1_1:56984984-56985003 | Msa0030600:intron | 15.0% |
!!! | AATATCTTTTAATAGAATGA+AGG | + | chr1_1:56985090-56985109 | Msa0030600:intron | 15.0% |
!!! | ATATCTTTTAATAGAATGAA+GGG | + | chr1_1:56985091-56985110 | Msa0030600:intron | 15.0% |
!! | AGAACTTTAATTAATAATTC+AGG | + | chr1_1:56985161-56985180 | Msa0030600:intron | 15.0% |
!!! | TTTTCTTAATCTATAACAAA+TGG | - | chr1_1:56985663-56985682 | None:intergenic | 15.0% |
!!! | TATTATTTTCTAAAAAGTCA+AGG | - | chr1_1:56986088-56986107 | None:intergenic | 15.0% |
!!! | TTTTTCATATAAAAAATTGG+CGG | + | chr1_1:56987663-56987682 | Msa0030600:intron | 15.0% |
!!! | CTATATTATAGAACAATTTT+GGG | + | chr1_1:56988636-56988655 | Msa0030600:three_prime_UTR | 15.0% |
!!! | TATATTATAGAACAATTTTG+GGG | + | chr1_1:56988637-56988656 | Msa0030600:three_prime_UTR | 15.0% |
!! | TATAATTAATCAACGAATAA+AGG | - | chr1_1:56988870-56988889 | None:intergenic | 15.0% |
!!! | ATATTCAGTATTTTAAAACT+TGG | + | chr1_1:56988962-56988981 | Msa0030600:three_prime_UTR | 15.0% |
!!! | TAGTTTTATCATCTGATTTA+CGG | + | chr1_1:56984397-56984416 | Msa0030600:intron | 20.0% |
!! | ATGAATTGTTGTAAATGATA+CGG | + | chr1_1:56984423-56984442 | Msa0030600:intron | 20.0% |
!! | TCTCTAATTATTTGATTGAA+GGG | - | chr1_1:56984598-56984617 | None:intergenic | 20.0% |
!! | TTCTCTAATTATTTGATTGA+AGG | - | chr1_1:56984599-56984618 | None:intergenic | 20.0% |
!! | TAAACTCTACTTATATAACA+TGG | - | chr1_1:56984693-56984712 | None:intergenic | 20.0% |
!! | TCTACATTACAAATTACAAA+GGG | - | chr1_1:56985240-56985259 | None:intergenic | 20.0% |
!! | TTCACTTTATCTGTAATAAT+AGG | + | chr1_1:56985402-56985421 | Msa0030600:intron | 20.0% |
!!! | ATTTCTCTGTATTTTTAGTA+AGG | + | chr1_1:56985691-56985710 | Msa0030600:intron | 20.0% |
!! | TATTAAATCATCAATGAGAA+CGG | - | chr1_1:56985913-56985932 | None:intergenic | 20.0% |
!!! | CTAACTTATTAATTTGCTAT+AGG | + | chr1_1:56985956-56985975 | Msa0030600:intron | 20.0% |
!!! | TTGATATGATTTTATATCTC+AGG | + | chr1_1:56986108-56986127 | Msa0030600:intron | 20.0% |
!! | GTTAATCTAATACTTGATTT+CGG | + | chr1_1:56986168-56986187 | Msa0030600:intron | 20.0% |
!!! | TTTTTGAAGTACTTTAATGT+AGG | + | chr1_1:56986409-56986428 | Msa0030600:intron | 20.0% |
!! | AATGGCAATATGATAATTAT+TGG | - | chr1_1:56986759-56986778 | None:intergenic | 20.0% |
!!! | TATTTTAATGCAAAACAAAG+AGG | - | chr1_1:56986807-56986826 | None:intergenic | 20.0% |
!! | CCAACTTTAAATTGATAAAA+AGG | - | chr1_1:56986978-56986997 | None:intergenic | 20.0% |
!!! | CCTTTTTATCAATTTAAAGT+TGG | + | chr1_1:56986975-56986994 | Msa0030600:intron | 20.0% |
!!! | AACTTTTTCATAAATCTGAA+GGG | - | chr1_1:56987050-56987069 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTCCATTAGATA+CGG | + | chr1_1:56988058-56988077 | Msa0030600:intron | 20.0% |
!!! | ATTGCAAAAAAGTTATTTCA+AGG | - | chr1_1:56988274-56988293 | None:intergenic | 20.0% |
!! | TTTAATTATTTGGTCGTTAA+AGG | + | chr1_1:56988319-56988338 | Msa0030600:intron | 20.0% |
!!! | TTGTAAAAATTTGATAATCG+TGG | + | chr1_1:56988369-56988388 | Msa0030600:intron | 20.0% |
!! | CCAAAATTGTTCTATAATAT+AGG | - | chr1_1:56988638-56988657 | None:intergenic | 20.0% |
!!! | CCTATATTATAGAACAATTT+TGG | + | chr1_1:56988635-56988654 | Msa0030600:three_prime_UTR | 20.0% |
! | CATCAAATCAAAAGCTAAAA+CGG | - | chr1_1:56984451-56984470 | None:intergenic | 25.0% |
!! | AATTATTAACAATCTAGCTC+AGG | + | chr1_1:56984564-56984583 | Msa0030600:intron | 25.0% |
! | TATTACAATGATAAGACAGT+AGG | + | chr1_1:56984636-56984655 | Msa0030600:intron | 25.0% |
!!! | ACATGGTTATTTTGTGTTTA+CGG | - | chr1_1:56984676-56984695 | None:intergenic | 25.0% |
! | ACGCATAAGTTTATTTACTA+TGG | - | chr1_1:56984924-56984943 | None:intergenic | 25.0% |
! | CTCTACATTACAAATTACAA+AGG | - | chr1_1:56985241-56985260 | None:intergenic | 25.0% |
! | TTTATCTGTAATAATAGGTG+TGG | + | chr1_1:56985407-56985426 | Msa0030600:intron | 25.0% |
! | TTTCAGTTTAATAATCTCCT+CGG | - | chr1_1:56985621-56985640 | None:intergenic | 25.0% |
!!! | CACACGTAATTTTAAAGTAA+AGG | + | chr1_1:56985800-56985819 | Msa0030600:intron | 25.0% |
!!! | ACGTAATTTTAAAGTAAAGG+CGG | + | chr1_1:56985803-56985822 | Msa0030600:intron | 25.0% |
! | GTTAAGAATATAAATTTCCC+AGG | - | chr1_1:56985845-56985864 | None:intergenic | 25.0% |
!!! | ACTTATTAATTTGCTATAGG+TGG | + | chr1_1:56985959-56985978 | Msa0030600:intron | 25.0% |
! | AAAAAATAGATGTGAAATGC+AGG | - | chr1_1:56986148-56986167 | None:intergenic | 25.0% |
!!! | AGTAACAGATGGTTTTAAAA+CGG | - | chr1_1:56986273-56986292 | None:intergenic | 25.0% |
! | ATAGATATTACAGTAACAGA+TGG | - | chr1_1:56986284-56986303 | None:intergenic | 25.0% |
!! | AAAAAAGTATATGATGCTAC+AGG | - | chr1_1:56986393-56986412 | None:intergenic | 25.0% |
!!! | GATTTTTTTAGTTTCTGTGA+TGG | + | chr1_1:56986490-56986509 | Msa0030600:intron | 25.0% |
! | TTGCAATTGTACTATTGTAA+TGG | + | chr1_1:56986572-56986591 | Msa0030600:intron | 25.0% |
! | ATTGTAAATTAGTAATGTCC+TGG | + | chr1_1:56986826-56986845 | Msa0030600:intron | 25.0% |
!!! | TGAACTTTTGTTATTTTGCA+AGG | + | chr1_1:56986902-56986921 | Msa0030600:intron | 25.0% |
! | TGAAAGAGTTATGTTTAACT+TGG | + | chr1_1:56987011-56987030 | Msa0030600:intron | 25.0% |
!!! | ACTTTTTCATAAATCTGAAG+GGG | - | chr1_1:56987049-56987068 | None:intergenic | 25.0% |
!!! | CAACTTTTTCATAAATCTGA+AGG | - | chr1_1:56987051-56987070 | None:intergenic | 25.0% |
!!! | AACCAACTCTTTTTAAGATT+AGG | - | chr1_1:56987164-56987183 | None:intergenic | 25.0% |
! | ATCATTTCAGAATATTGTCA+TGG | + | chr1_1:56987916-56987935 | Msa0030600:intron | 25.0% |
!!! | TTTTTTTCTCCATTAGATAC+GGG | + | chr1_1:56988059-56988078 | Msa0030600:intron | 25.0% |
! | GTTAAACTTGAATTTCTCTT+TGG | + | chr1_1:56988246-56988265 | Msa0030600:intron | 25.0% |
!! | AGACAATATGTTTTTCTTGA+GGG | - | chr1_1:56988456-56988475 | None:intergenic | 25.0% |
!! | TAGACAATATGTTTTTCTTG+AGG | - | chr1_1:56988457-56988476 | None:intergenic | 25.0% |
! | TTAATACATGACAACTACTA+TGG | + | chr1_1:56988781-56988800 | Msa0030600:three_prime_UTR | 25.0% |
TCATCTTCTTCTTTCTGTTT+CGG | - | chr1_1:56984153-56984172 | None:intergenic | 30.0% | |
CAGAAAGAAGAAGATGAAAA+TGG | + | chr1_1:56984156-56984175 | Msa0030600:exon | 30.0% | |
AAGATCGAGAAAATTACCAA+GGG | - | chr1_1:56984336-56984355 | None:intergenic | 30.0% | |
! | TTTTCATTCACTAAGTGATG+TGG | - | chr1_1:56984778-56984797 | None:intergenic | 30.0% |
TCATAGGTCATTAGGTAATT+TGG | + | chr1_1:56984810-56984829 | Msa0030600:intron | 30.0% | |
! | CTGGTTTGCATAAAATAAAC+TGG | + | chr1_1:56984895-56984914 | Msa0030600:intron | 30.0% |
! | TCATCTCGACTATTTGATTT+AGG | + | chr1_1:56985038-56985057 | Msa0030600:intron | 30.0% |
!! | CCTTAATGGATATAGTGTTT+TGG | - | chr1_1:56985125-56985144 | None:intergenic | 30.0% |
CCAAAACACTATATCCATTA+AGG | + | chr1_1:56985122-56985141 | Msa0030600:intron | 30.0% | |
!!! | ATCCATTAAGGTTTTTGAGT+AGG | + | chr1_1:56985134-56985153 | Msa0030600:intron | 30.0% |
TTCCTACTCAAAAACCTTAA+TGG | - | chr1_1:56985139-56985158 | None:intergenic | 30.0% | |
CAGATAAAATTTACTGAGCT+TGG | - | chr1_1:56985536-56985555 | None:intergenic | 30.0% | |
TGAAACTTTGACATTTACCA+GGG | + | chr1_1:56985636-56985655 | Msa0030600:intron | 30.0% | |
!!! | TAATTTTAAAGTAAAGGCGG+AGG | + | chr1_1:56985806-56985825 | Msa0030600:intron | 30.0% |
AGAATATAAATTTCCCAGGA+TGG | - | chr1_1:56985841-56985860 | None:intergenic | 30.0% | |
AAAATTCCTGTAGGTTTGAA+GGG | + | chr1_1:56986191-56986210 | Msa0030600:intron | 30.0% | |
! | GAAGTACTTTAATGTAGGAT+TGG | + | chr1_1:56986414-56986433 | Msa0030600:intron | 30.0% |
! | ATCTAAAACTCTAGTATCTC+AGG | - | chr1_1:56986444-56986463 | None:intergenic | 30.0% |
AAATACACAGAAGAGAGAAA+GGG | - | chr1_1:56986549-56986568 | None:intergenic | 30.0% | |
AAAATACACAGAAGAGAGAA+AGG | - | chr1_1:56986550-56986569 | None:intergenic | 30.0% | |
!! | TAATGGATTTCCTAAACAGA+GGG | + | chr1_1:56986589-56986608 | Msa0030600:intron | 30.0% |
TTTCACAAACATTCCATGAT+TGG | - | chr1_1:56986858-56986877 | None:intergenic | 30.0% | |
!!! | TTTTGTTATTTTGCAAGGTG+TGG | + | chr1_1:56986907-56986926 | Msa0030600:intron | 30.0% |
! | AGTTGCTGCAGTTTTTAAAT+CGG | + | chr1_1:56987066-56987085 | Msa0030600:CDS | 30.0% |
TGCCTAATCTTAAAAAGAGT+TGG | + | chr1_1:56987159-56987178 | Msa0030600:intron | 30.0% | |
TAAAAAGTGAAGTCCAATAG+AGG | + | chr1_1:56987206-56987225 | Msa0030600:intron | 30.0% | |
GTAGCAAGAAGAAATAATGT+AGG | + | chr1_1:56987267-56987286 | Msa0030600:intron | 30.0% | |
AATGTAGGTACCAAAACAAA+TGG | + | chr1_1:56987282-56987301 | Msa0030600:intron | 30.0% | |
ATGTAGGTACCAAAACAAAT+GGG | + | chr1_1:56987283-56987302 | Msa0030600:intron | 30.0% | |
! | AGCATTTTTCCCATTTGTTT+TGG | - | chr1_1:56987295-56987314 | None:intergenic | 30.0% |
! | TTCTGCAATAACTTTTATGC+AGG | + | chr1_1:56987427-56987446 | Msa0030600:intron | 30.0% |
! | GCTTTTATCAATGAGAAATC+TGG | + | chr1_1:56987546-56987565 | Msa0030600:CDS | 30.0% |
CAAATTAAACAGTTCTCAAG+GGG | - | chr1_1:56987961-56987980 | None:intergenic | 30.0% | |
GCAAATTAAACAGTTCTCAA+GGG | - | chr1_1:56987962-56987981 | None:intergenic | 30.0% | |
TGCAAATTAAACAGTTCTCA+AGG | - | chr1_1:56987963-56987982 | None:intergenic | 30.0% | |
ATTTGCATGCGTATACTTTA+TGG | + | chr1_1:56987976-56987995 | Msa0030600:intron | 30.0% | |
! | TTGCTTTAAGCAACATAACA+GGG | - | chr1_1:56988009-56988028 | None:intergenic | 30.0% |
! | TTTGCTTTAAGCAACATAAC+AGG | - | chr1_1:56988010-56988029 | None:intergenic | 30.0% |
AGTACTTCTTAGAAACTTTC+AGG | - | chr1_1:56988093-56988112 | None:intergenic | 30.0% | |
!! | GAAAGTTTCTAAGAAGTACT+TGG | + | chr1_1:56988093-56988112 | Msa0030600:CDS | 30.0% |
! | GAGAAATTCAAGTTTAACCA+AGG | - | chr1_1:56988244-56988263 | None:intergenic | 30.0% |
AAGGAGATTAAGAATTGAAG+TGG | + | chr1_1:56988338-56988357 | Msa0030600:intron | 30.0% | |
TCTACATATGCTTGACTTAA+CGG | + | chr1_1:56988473-56988492 | Msa0030600:exon | 30.0% | |
AATGTCAAACATTCATCACA+AGG | - | chr1_1:56988545-56988564 | None:intergenic | 30.0% | |
ACATTGACATCAAAATTGCT+GGG | + | chr1_1:56988560-56988579 | Msa0030600:three_prime_UTR | 30.0% | |
!!! | ATAGAACAATTTTGGGGTAA+TGG | + | chr1_1:56988643-56988662 | Msa0030600:three_prime_UTR | 30.0% |
TTTATACCATAAACCAACGA+AGG | - | chr1_1:56988743-56988762 | None:intergenic | 30.0% | |
CAACTACTATGGTTAATACA+AGG | + | chr1_1:56988792-56988811 | Msa0030600:three_prime_UTR | 30.0% | |
ACGATAGTTAATGCATCATA+AGG | + | chr1_1:56988820-56988839 | Msa0030600:three_prime_UTR | 30.0% | |
AACTCAAAAATGAACTCAGA+AGG | + | chr1_1:56988917-56988936 | Msa0030600:three_prime_UTR | 30.0% | |
!!! | TCAGTATTTTAAAACTTGGC+TGG | + | chr1_1:56988966-56988985 | Msa0030600:three_prime_UTR | 30.0% |
!!! | CAGTATTTTAAAACTTGGCT+GGG | + | chr1_1:56988967-56988986 | Msa0030600:three_prime_UTR | 30.0% |
!!! | AGTATTTTAAAACTTGGCTG+GGG | + | chr1_1:56988968-56988987 | Msa0030600:three_prime_UTR | 30.0% |
GACTGAAGAAAATTTCGAGA+AGG | + | chr1_1:56984270-56984289 | Msa0030600:CDS | 35.0% | |
GAAAATTTCGAGAAGGAAGT+TGG | + | chr1_1:56984277-56984296 | Msa0030600:CDS | 35.0% | |
! | AAGGAAGTTGGTCAAGATAA+AGG | + | chr1_1:56984289-56984308 | Msa0030600:CDS | 35.0% |
AGATCGAGAAAATTACCAAG+GGG | - | chr1_1:56984335-56984354 | None:intergenic | 35.0% | |
GAAGATCGAGAAAATTACCA+AGG | - | chr1_1:56984337-56984356 | None:intergenic | 35.0% | |
!! | TTTTTCTGATTCGCTTCGAT+CGG | + | chr1_1:56984360-56984379 | Msa0030600:intron | 35.0% |
AAAAACACATGCCTTGTCAT+AGG | + | chr1_1:56984794-56984813 | Msa0030600:intron | 35.0% | |
TTACCTAATGACCTATGACA+AGG | - | chr1_1:56984808-56984827 | None:intergenic | 35.0% | |
TTAGGTAATTTGGCAACACA+TGG | + | chr1_1:56984820-56984839 | Msa0030600:intron | 35.0% | |
!! | GATTCTCTTGGGTTGAATAT+AGG | + | chr1_1:56984952-56984971 | Msa0030600:intron | 35.0% |
AGTAAGTGTTATCTCTAGCT+TGG | + | chr1_1:56985296-56985315 | Msa0030600:intron | 35.0% | |
! | TTACCGAGCTTTTCATATTC+CGG | - | chr1_1:56985452-56985471 | None:intergenic | 35.0% |
CTTGGCAATCAAAACAGATT+TGG | - | chr1_1:56985489-56985508 | None:intergenic | 35.0% | |
!!! | CAAATCTGTTTTGATTGCCA+AGG | + | chr1_1:56985487-56985506 | Msa0030600:CDS | 35.0% |
! | AATTTACTGAGCTTGGTAAC+AGG | - | chr1_1:56985529-56985548 | None:intergenic | 35.0% |
CTGAAACTTTGACATTTACC+AGG | + | chr1_1:56985635-56985654 | Msa0030600:intron | 35.0% | |
AATCTATAACAAATGGACCC+TGG | - | chr1_1:56985656-56985675 | None:intergenic | 35.0% | |
ATCAAGTTCAAGCACAAAGA+TGG | - | chr1_1:56985878-56985897 | None:intergenic | 35.0% | |
!!! | TCAAGGTCTTCTCACTTTTT+GGG | - | chr1_1:56986071-56986090 | None:intergenic | 35.0% |
TGATTTCGGAAAATTCCTGT+AGG | + | chr1_1:56986182-56986201 | Msa0030600:intron | 35.0% | |
GAAAATTCCTGTAGGTTTGA+AGG | + | chr1_1:56986190-56986209 | Msa0030600:intron | 35.0% | |
ACATGTTTGTGTAACTTCCA+AGG | + | chr1_1:56986327-56986346 | Msa0030600:intron | 35.0% | |
GTCTTTGTGATATTTCCGAA+GGG | - | chr1_1:56986366-56986385 | None:intergenic | 35.0% | |
AGTATATGATGCTACAGGAT+GGG | - | chr1_1:56986388-56986407 | None:intergenic | 35.0% | |
AAGTATATGATGCTACAGGA+TGG | - | chr1_1:56986389-56986408 | None:intergenic | 35.0% | |
!! | TGCGCAGATTTTGATGATTT+AGG | - | chr1_1:56986467-56986486 | None:intergenic | 35.0% |
TGTTGAGCATAACTTTAGCA+TGG | + | chr1_1:56986513-56986532 | Msa0030600:intron | 35.0% | |
AATACACAGAAGAGAGAAAG+GGG | - | chr1_1:56986548-56986567 | None:intergenic | 35.0% | |
!! | GTAATGGATTTCCTAAACAG+AGG | + | chr1_1:56986588-56986607 | Msa0030600:intron | 35.0% |
AAACTCAACCAAGACATCTT+TGG | - | chr1_1:56986711-56986730 | None:intergenic | 35.0% | |
CTGCAATGATATCAACTTAC+AGG | - | chr1_1:56986952-56986971 | None:intergenic | 35.0% | |
CGATGTAGTGATTGCAAATT+TGG | + | chr1_1:56987093-56987112 | Msa0030600:CDS | 35.0% | |
ATTTGGATGCCGACAAATAT+AGG | + | chr1_1:56987110-56987129 | Msa0030600:CDS | 35.0% | |
TTTGGATGCCGACAAATATA+GGG | + | chr1_1:56987111-56987130 | Msa0030600:CDS | 35.0% | |
!! | CTAAAACTTACTTTTCAGCC+AGG | - | chr1_1:56987138-56987157 | None:intergenic | 35.0% |
CAATAGAGGTCAGATTGTTT+GGG | + | chr1_1:56987220-56987239 | Msa0030600:intron | 35.0% | |
AATAGAGGTCAGATTGTTTG+GGG | + | chr1_1:56987221-56987240 | Msa0030600:intron | 35.0% | |
TTATGCAGGTATGATGTAAG+TGG | + | chr1_1:56987441-56987460 | Msa0030600:intron | 35.0% | |
ATATAAAAAATTGGCGGCAG+TGG | + | chr1_1:56987669-56987688 | Msa0030600:intron | 35.0% | |
! | CGCACTTGATATTTCTGTAT+AGG | + | chr1_1:56987756-56987775 | Msa0030600:intron | 35.0% |
! | CTTGATATTTCTGTATAGGC+TGG | + | chr1_1:56987760-56987779 | Msa0030600:intron | 35.0% |
TCTCAACTTCCTCTTCAATT+CGG | - | chr1_1:56987861-56987880 | None:intergenic | 35.0% | |
GTAAATCTTCCCGTATCTAA+TGG | - | chr1_1:56988071-56988090 | None:intergenic | 35.0% | |
!! | TCTAAGAAGTACTTGGAGAA+AGG | + | chr1_1:56988100-56988119 | Msa0030600:CDS | 35.0% |
TGCATCAAGTGAAACTTTCA+AGG | - | chr1_1:56988207-56988226 | None:intergenic | 35.0% | |
GCATGAAATGATAAGTTCCT+TGG | + | chr1_1:56988224-56988243 | Msa0030600:intron | 35.0% | |
GACATTGACATCAAAATTGC+TGG | + | chr1_1:56988559-56988578 | Msa0030600:three_prime_UTR | 35.0% | |
TTACAATCTGTTTCCTTCGT+TGG | + | chr1_1:56988727-56988746 | Msa0030600:three_prime_UTR | 35.0% | |
ATAAACTTGTCGCATGAAGA+TGG | + | chr1_1:56988758-56988777 | Msa0030600:three_prime_UTR | 35.0% | |
! | CTTTTCTACGTTTAGTCACG+TGG | - | chr1_1:56984054-56984073 | None:intergenic | 40.0% |
AAATGGAGATGCATCAGATC+TGG | + | chr1_1:56984173-56984192 | Msa0030600:CDS | 40.0% | |
ATGCCTTGTCATAGGTCATT+AGG | + | chr1_1:56984802-56984821 | Msa0030600:intron | 40.0% | |
ATAAATACGACCATGTGCTC+TGG | + | chr1_1:56984876-56984895 | Msa0030600:intron | 40.0% | |
TTTATGCAAACCAGAGCACA+TGG | - | chr1_1:56984889-56984908 | None:intergenic | 40.0% | |
CGTCTCAATGTGATTCTCTT+GGG | + | chr1_1:56984941-56984960 | Msa0030600:intron | 40.0% | |
GTTCTTATTGCGAAGCATGT+TGG | + | chr1_1:56985574-56985593 | Msa0030600:intron | 40.0% | |
! | AAGAGTGTGTGCAGCAAATA+TGG | + | chr1_1:56985996-56986015 | Msa0030600:CDS | 40.0% |
TTGGAAACCACTGAATCGTT+GGG | - | chr1_1:56986034-56986053 | None:intergenic | 40.0% | |
TTTGGAAACCACTGAATCGT+TGG | - | chr1_1:56986035-56986054 | None:intergenic | 40.0% | |
ACGATTCAGTGGTTTCCAAA+AGG | + | chr1_1:56986035-56986054 | Msa0030600:CDS | 40.0% | |
!!! | TTGGGTTCTAGAGATCCTTT+TGG | - | chr1_1:56986053-56986072 | None:intergenic | 40.0% |
!! | GTCAAGGTCTTCTCACTTTT+TGG | - | chr1_1:56986072-56986091 | None:intergenic | 40.0% |
GCTGAGTTTGTAAACACAGA+AGG | + | chr1_1:56986235-56986254 | Msa0030600:CDS | 40.0% | |
GAGTTTGTAAACACAGAAGG+AGG | + | chr1_1:56986238-56986257 | Msa0030600:CDS | 40.0% | |
TTTGTGATATTTCCGAAGGG+TGG | - | chr1_1:56986363-56986382 | None:intergenic | 40.0% | |
GGTCTTTGTGATATTTCCGA+AGG | - | chr1_1:56986367-56986386 | None:intergenic | 40.0% | |
GTAAGTCAAACCCTCTGTTT+AGG | - | chr1_1:56986602-56986621 | None:intergenic | 40.0% | |
! | AAACAGAGGGTTTGACTTAC+AGG | + | chr1_1:56986602-56986621 | Msa0030600:intron | 40.0% |
AGCTGTAGCAATCTTCACAT+TGG | - | chr1_1:56986630-56986649 | None:intergenic | 40.0% | |
ACAACTTCGTTGAAGGTTTC+AGG | - | chr1_1:56986677-56986696 | None:intergenic | 40.0% | |
AACCTTCAACGAAGTTGTCT+TGG | + | chr1_1:56986679-56986698 | Msa0030600:CDS | 40.0% | |
ATCCAAGACAACTTCGTTGA+AGG | - | chr1_1:56986684-56986703 | None:intergenic | 40.0% | |
GGATGAAACCAAAGATGTCT+TGG | + | chr1_1:56986700-56986719 | Msa0030600:CDS | 40.0% | |
!! | TGGTTGAGTTTTATGCACCA+TGG | + | chr1_1:56986720-56986739 | Msa0030600:CDS | 40.0% |
TTCCATGATTGGATGAAACC+AGG | - | chr1_1:56986847-56986866 | None:intergenic | 40.0% | |
! | TGCTGCAGTTTTTAAATCGG+AGG | + | chr1_1:56987069-56987088 | Msa0030600:CDS | 40.0% |
CCAAACAATCTGACCTCTAT+TGG | - | chr1_1:56987222-56987241 | None:intergenic | 40.0% | |
CCAATAGAGGTCAGATTGTT+TGG | + | chr1_1:56987219-56987238 | Msa0030600:intron | 40.0% | |
ATCATGCAGTTTGGTCTAGT+AGG | - | chr1_1:56987247-56987266 | None:intergenic | 40.0% | |
TCTTGCTACATCATGCAGTT+TGG | - | chr1_1:56987256-56987275 | None:intergenic | 40.0% | |
TTTGGGAAGAACTTCAAGGT+AGG | - | chr1_1:56987471-56987490 | None:intergenic | 40.0% | |
TACCTTGAAGTTCTTCCCAA+AGG | + | chr1_1:56987470-56987489 | Msa0030600:CDS | 40.0% | |
ACCTTGAAGTTCTTCCCAAA+GGG | + | chr1_1:56987471-56987490 | Msa0030600:CDS | 40.0% | |
AACAAAGCCGGTGAAGATTA+TGG | + | chr1_1:56987495-56987514 | Msa0030600:CDS | 40.0% | |
AAGAGACTTGGATGACTTTG+TGG | + | chr1_1:56987524-56987543 | Msa0030600:CDS | 40.0% | |
AAAAGGACAGCTTACTTCTG+AGG | + | chr1_1:56987584-56987603 | Msa0030600:CDS | 40.0% | |
TTCTGTATAGGCTGGTATAG+TGG | + | chr1_1:56987768-56987787 | Msa0030600:intron | 40.0% | |
AGACTTGGACGAATTGGTAA+AGG | + | chr1_1:56987792-56987811 | Msa0030600:CDS | 40.0% | |
TGCTGATGACAAAGAGAAGA+AGG | + | chr1_1:56987825-56987844 | Msa0030600:CDS | 40.0% | |
CTCAACTTCCTCTTCAATTC+GGG | - | chr1_1:56987860-56987879 | None:intergenic | 40.0% | |
!!! | CCTTTTCAAGTAGTCGTTCT+AGG | - | chr1_1:56988156-56988175 | None:intergenic | 40.0% |
CCTAGAACGACTACTTGAAA+AGG | + | chr1_1:56988153-56988172 | Msa0030600:CDS | 40.0% | |
TTTCTTGAGGGTCAATTCGT+CGG | - | chr1_1:56988444-56988463 | None:intergenic | 40.0% | |
ATCTCAGGTAAACTACAACG+GGG | - | chr1_1:56988682-56988701 | None:intergenic | 40.0% | |
GATCTCAGGTAAACTACAAC+GGG | - | chr1_1:56988683-56988702 | None:intergenic | 40.0% | |
CGATCTCAGGTAAACTACAA+CGG | - | chr1_1:56988684-56988703 | None:intergenic | 40.0% | |
CCTTCTCAAAAATCGATCTC+AGG | - | chr1_1:56988697-56988716 | None:intergenic | 40.0% | |
!! | CCTGAGATCGATTTTTGAGA+AGG | + | chr1_1:56988694-56988713 | Msa0030600:three_prime_UTR | 40.0% |
!! | CTGTTTCCTTCGTTGGTTTA+TGG | + | chr1_1:56988734-56988753 | Msa0030600:three_prime_UTR | 40.0% |
!!! | TTTTAAAACTTGGCTGGGGA+TGG | + | chr1_1:56988972-56988991 | Msa0030600:three_prime_UTR | 40.0% |
ATAATCAGCACGTGCTGTAG+CGG | + | chr1_1:56984122-56984141 | Msa0030600:five_prime_UTR | 45.0% | |
GCGTCTCAATGTGATTCTCT+TGG | + | chr1_1:56984940-56984959 | Msa0030600:intron | 45.0% | |
! | ACACTGCAAAAAGCTTGCTC+CGG | + | chr1_1:56985430-56985449 | Msa0030600:CDS | 45.0% |
GCTCCGGAATATGAAAAGCT+CGG | + | chr1_1:56985446-56985465 | Msa0030600:CDS | 45.0% | |
! | TTGGTAACAGGAAAACCAGG+GGG | - | chr1_1:56985517-56985536 | None:intergenic | 45.0% |
! | CTTGGTAACAGGAAAACCAG+GGG | - | chr1_1:56985518-56985537 | None:intergenic | 45.0% |
! | GCTTGGTAACAGGAAAACCA+GGG | - | chr1_1:56985519-56985538 | None:intergenic | 45.0% |
! | AGCTTGGTAACAGGAAAACC+AGG | - | chr1_1:56985520-56985539 | None:intergenic | 45.0% |
ATTGCGAAGCATGTTGGTGT+TGG | + | chr1_1:56985580-56985599 | Msa0030600:intron | 45.0% | |
! | AATCTCCTCGGTTTGTAGAC+AGG | - | chr1_1:56985609-56985628 | None:intergenic | 45.0% |
ACACACACACAGAATGCAGA+AGG | - | chr1_1:56985739-56985758 | None:intergenic | 45.0% | |
TACAGCTCCATCTCATGTAG+TGG | + | chr1_1:56986643-56986662 | Msa0030600:CDS | 45.0% | |
GTTAGCACCACTACATGAGA+TGG | - | chr1_1:56986653-56986672 | None:intergenic | 45.0% | |
TTGGTGAGTAGTGAGTACCA+TGG | - | chr1_1:56986740-56986759 | None:intergenic | 45.0% | |
GTCCTGGTTTCATCCAATCA+TGG | + | chr1_1:56986842-56986861 | Msa0030600:intron | 45.0% | |
AGCCAGGTCCCTATATTTGT+CGG | - | chr1_1:56987122-56987141 | None:intergenic | 45.0% | |
AGCTGCAGTTAGTGAAGACT+TGG | + | chr1_1:56987368-56987387 | Msa0030600:intron | 45.0% | |
TGCAGTTAGTGAAGACTTGG+AGG | + | chr1_1:56987371-56987390 | Msa0030600:intron | 45.0% | |
AGTTAGTGAAGACTTGGAGG+TGG | + | chr1_1:56987374-56987393 | Msa0030600:intron | 45.0% | |
AAAGCCGGTGAAGATTATGG+AGG | + | chr1_1:56987498-56987517 | Msa0030600:CDS | 45.0% | |
TCCACCTCCATAATCTTCAC+CGG | - | chr1_1:56987505-56987524 | None:intergenic | 45.0% | |
TTATGGAGGTGGAAGAGACT+TGG | + | chr1_1:56987512-56987531 | Msa0030600:CDS | 45.0% | |
GGAACAAGTCGAGATGCAAA+AGG | + | chr1_1:56987567-56987586 | Msa0030600:CDS | 45.0% | |
AGTGGAAGACTTGGACGAAT+TGG | + | chr1_1:56987786-56987805 | Msa0030600:CDS | 45.0% | |
CTCTTCAATTCGGGCAAACA+CGG | - | chr1_1:56987851-56987870 | None:intergenic | 45.0% | |
AGAGGAAGTTGAGAAGCTCA+AGG | + | chr1_1:56987867-56987886 | Msa0030600:CDS | 45.0% | |
GAGGAAGTTGAGAAGCTCAA+GGG | + | chr1_1:56987868-56987887 | Msa0030600:CDS | 45.0% | |
GCAATTTCTACCATCGATCC+TGG | + | chr1_1:56988497-56988516 | Msa0030600:three_prime_UTR | 45.0% | |
! | TTGCTGGGAGATTTTCAACG+TGG | + | chr1_1:56988575-56988594 | Msa0030600:three_prime_UTR | 45.0% |
!!! | ATTTTTTTCATATAAAAAAT+TGG | + | chr1_1:56987660-56987679 | Msa0030600:intron | 5.0% |
!!! | TTTTACAAATTTTAATTATT+TGG | + | chr1_1:56988309-56988328 | Msa0030600:intron | 5.0% |
ATCAGTTTCAGCAGACGACG+TGG | + | chr1_1:56984240-56984259 | Msa0030600:CDS | 50.0% | |
GGATACCTGTCTACAAACCG+AGG | + | chr1_1:56985601-56985620 | Msa0030600:intron | 50.0% | |
AAGTAAAGGCGGAGGAGAGT+TGG | + | chr1_1:56985814-56985833 | Msa0030600:intron | 50.0% | |
TGCAGCAAATATGGCGTCTC+TGG | + | chr1_1:56986005-56986024 | Msa0030600:CDS | 50.0% | |
GCAGCAAATATGGCGTCTCT+GGG | + | chr1_1:56986006-56986025 | Msa0030600:CDS | 50.0% | |
AGGGTGGCACTATGTTTCCT+TGG | - | chr1_1:56986347-56986366 | None:intergenic | 50.0% | |
GGAAACATAGTGCCACCCTT+CGG | + | chr1_1:56986348-56986367 | Msa0030600:intron | 50.0% | |
TGCCGACAAATATAGGGACC+TGG | + | chr1_1:56987117-56987136 | Msa0030600:CDS | 50.0% | |
! | GCCCTTTGGGAAGAACTTCA+AGG | - | chr1_1:56987475-56987494 | None:intergenic | 50.0% |
TTCCCAAAGGGCAACAAAGC+CGG | + | chr1_1:56987483-56987502 | Msa0030600:CDS | 50.0% | |
AAAATTGGCGGCAGTGGACA+TGG | + | chr1_1:56987675-56987694 | Msa0030600:intron | 50.0% | |
! | GGCTGGTATAGTGGAAGACT+TGG | + | chr1_1:56987777-56987796 | Msa0030600:intron | 50.0% |
CGTGTTTGCCCGAATTGAAG+AGG | + | chr1_1:56987849-56987868 | Msa0030600:CDS | 50.0% | |
AGCTCAAGGGTTCTGCTTCT+AGG | + | chr1_1:56987881-56987900 | Msa0030600:CDS | 50.0% | |
TCAATTCGTCGGCCTTAGCA+GGG | - | chr1_1:56988433-56988452 | None:intergenic | 50.0% | |
! | ACACTAGCTTCCAGGATCGA+TGG | - | chr1_1:56988510-56988529 | None:intergenic | 50.0% |
TCATCACAAGGAGCTGCAGT+GGG | - | chr1_1:56988533-56988552 | None:intergenic | 50.0% | |
TTCATCACAAGGAGCTGCAG+TGG | - | chr1_1:56988534-56988553 | None:intergenic | 50.0% | |
GGCTGGGGATGGTCTAATTT+AGG | + | chr1_1:56988983-56989002 | Msa0030600:three_prime_UTR | 50.0% | |
TCGTTGAGTTCTACGCCCCT+TGG | + | chr1_1:56984317-56984336 | Msa0030600:CDS | 55.0% | |
GAGGAGAGTTGGACCATCCT+GGG | + | chr1_1:56985825-56985844 | Msa0030600:intron | 55.0% | |
CTGGGTACCCAACGATTCAG+TGG | + | chr1_1:56986024-56986043 | Msa0030600:CDS | 55.0% | |
GCAAGTGATTCTGCAGTGCG+TGG | - | chr1_1:56986217-56986236 | None:intergenic | 55.0% | |
!! | CACCGGCTTTGTTGCCCTTT+GGG | - | chr1_1:56987488-56987507 | None:intergenic | 55.0% |
!! | TCACCGGCTTTGTTGCCCTT+TGG | - | chr1_1:56987489-56987508 | None:intergenic | 55.0% |
GCCGGTGAAGATTATGGAGG+TGG | + | chr1_1:56987501-56987520 | Msa0030600:CDS | 55.0% | |
GCAGTGGACATGGTGGCTTT+GGG | + | chr1_1:56987685-56987704 | Msa0030600:intron | 55.0% | |
! | CAGTGGACATGGTGGCTTTG+GGG | + | chr1_1:56987686-56987705 | Msa0030600:intron | 55.0% |
GCAGTCTATCAGCCCTGCTA+AGG | + | chr1_1:56988418-56988437 | Msa0030600:intron | 55.0% | |
GTCAATTCGTCGGCCTTAGC+AGG | - | chr1_1:56988434-56988453 | None:intergenic | 55.0% | |
GAAAACCAGGGGGCTGACCT+TGG | - | chr1_1:56985507-56985526 | None:intergenic | 60.0% | |
GGAGGAGAGTTGGACCATCC+TGG | + | chr1_1:56985824-56985843 | Msa0030600:intron | 60.0% | |
GCGTGGCCCTTCAAACCTAC+AGG | - | chr1_1:56986200-56986219 | None:intergenic | 60.0% | |
ATTGGCGGCAGTGGACATGG+TGG | + | chr1_1:56987678-56987697 | Msa0030600:intron | 60.0% | |
GGCAGTGGACATGGTGGCTT+TGG | + | chr1_1:56987684-56987703 | Msa0030600:intron | 60.0% | |
!! | TGGACATGGTGGCTTTGGGG+TGG | + | chr1_1:56987689-56987708 | Msa0030600:intron | 60.0% |
!! | GGACATGGTGGCTTTGGGGT+GGG | + | chr1_1:56987690-56987709 | Msa0030600:intron | 60.0% |
!! | GGTGGCTTTGGGGTGGGATA+AGG | + | chr1_1:56987696-56987715 | Msa0030600:intron | 60.0% |
! | GCAGTGGGACACTAGCTTCC+AGG | - | chr1_1:56988518-56988537 | None:intergenic | 60.0% |
GATTGCCAAGGTCAGCCCCC+TGG | + | chr1_1:56985499-56985518 | Msa0030600:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 56984016 | 56989012 | 56984016 | ID=Msa0030600;Name=Msa0030600 |
chr1_1 | mRNA | 56984016 | 56989012 | 56984016 | ID=Msa0030600-mRNA-1;Parent=Msa0030600;Name=Msa0030600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|1|1|11|525|364 |
chr1_1 | exon | 56984016 | 56984338 | 56984016 | ID=Msa0030600-mRNA-1:exon:17115;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56985424 | 56985508 | 56985424 | ID=Msa0030600-mRNA-1:exon:17116;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56985978 | 56986075 | 56985978 | ID=Msa0030600-mRNA-1:exon:17117;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56986204 | 56986259 | 56986204 | ID=Msa0030600-mRNA-1:exon:17118;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56986624 | 56986741 | 56986624 | ID=Msa0030600-mRNA-1:exon:17119;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56986924 | 56986951 | 56986924 | ID=Msa0030600-mRNA-1:exon:17120;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56987055 | 56987146 | 56987055 | ID=Msa0030600-mRNA-1:exon:17121;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56987449 | 56987605 | 56987449 | ID=Msa0030600-mRNA-1:exon:17122;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56987778 | 56987902 | 56987778 | ID=Msa0030600-mRNA-1:exon:17123;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56988075 | 56988174 | 56988075 | ID=Msa0030600-mRNA-1:exon:17124;Parent=Msa0030600-mRNA-1 |
chr1_1 | exon | 56988422 | 56989012 | 56988422 | ID=Msa0030600-mRNA-1:exon:17125;Parent=Msa0030600-mRNA-1 |
chr1_1 | five_prime_UTR | 56984016 | 56984168 | 56984016 | ID=Msa0030600-mRNA-1:five_prime_utr;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56984169 | 56984338 | 56984169 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56985424 | 56985508 | 56985424 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56985978 | 56986075 | 56985978 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56986204 | 56986259 | 56986204 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56986624 | 56986741 | 56986624 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56986924 | 56986951 | 56986924 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56987055 | 56987146 | 56987055 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56987449 | 56987605 | 56987449 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56987778 | 56987902 | 56987778 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56988075 | 56988174 | 56988075 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | CDS | 56988422 | 56988487 | 56988422 | ID=Msa0030600-mRNA-1:cds;Parent=Msa0030600-mRNA-1 |
chr1_1 | three_prime_UTR | 56988488 | 56989012 | 56988488 | ID=Msa0030600-mRNA-1:three_prime_utr;Parent=Msa0030600-mRNA-1 |
Gene Sequence |
Protein sequence |