AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174550 MtrunA17_Chr1g0194961 98.901 364 4 0 1 364 1 364 0.0 730
Msa0174550 MtrunA17_Chr7g0271721 68.820 356 107 1 8 363 3 354 0.0 516
Msa0174550 MtrunA17_Chr5g0438731 33.829 269 153 6 10 258 36 299 4.61e-40 147
Msa0174550 MtrunA17_Chr5g0438731 40.741 135 72 4 27 159 188 316 2.87e-20 91.7
Msa0174550 MtrunA17_Chr2g0287471 50.000 104 49 2 147 250 28 128 6.67e-24 100
Msa0174550 MtrunA17_Chr2g0287471 38.583 127 70 4 10 131 5 128 2.24e-17 82.4
Msa0174550 MtrunA17_Chr2g0326581 35.616 219 119 8 31 234 290 501 8.10e-24 102
Msa0174550 MtrunA17_Chr2g0326581 37.209 172 88 4 30 200 79 231 4.27e-19 88.6
Msa0174550 MtrunA17_Chr2g0326581 38.857 175 90 7 149 315 80 245 8.53e-18 84.7
Msa0174550 MtrunA17_Chr2g0326581 34.483 116 71 3 30 142 417 530 1.98e-14 74.7
Msa0174550 MtrunA17_Chr1g0200731 40.000 120 69 2 31 149 95 212 3.19e-22 97.8
Msa0174550 MtrunA17_Chr3g0124851 46.602 103 54 1 149 251 379 480 4.68e-22 97.4
Msa0174550 MtrunA17_Chr3g0124851 47.872 94 46 2 168 258 53 146 9.51e-21 93.6
Msa0174550 MtrunA17_Chr3g0124851 37.956 137 75 4 8 137 11 144 3.19e-20 92.0
Msa0174550 MtrunA17_Chr3g0124851 41.860 86 49 1 47 132 396 480 9.31e-16 78.6
Msa0174550 MtrunA17_Chr4g0029181 44.318 88 47 1 149 236 440 525 5.60e-18 85.5
Msa0174550 MtrunA17_Chr4g0029181 38.636 132 77 3 26 156 97 225 1.59e-16 80.9
Msa0174550 MtrunA17_Chr4g0029181 43.885 139 66 5 149 279 102 236 2.33e-16 80.5
Msa0174550 MtrunA17_Chr4g0029181 34.259 108 62 4 30 132 439 542 1.55e-12 68.6
Msa0174550 MtrunA17_Chr4g0041801 33.913 115 62 2 34 134 146 260 6.70e-15 75.9
Msa0174550 MtrunA17_Chr4g0041801 30.851 94 51 2 169 248 162 255 4.15e-11 64.3
Msa0174550 MtrunA17_Chr2g0326241 33.884 121 77 3 18 136 27 146 8.47e-15 71.6
Msa0174550 MtrunA17_Chr2g0326241 29.524 105 73 1 147 251 39 142 5.77e-11 60.5
Msa0174550 MtrunA17_Chr1g0211871 39.535 86 46 2 157 242 78 157 2.06e-13 68.2
Msa0174550 MtrunA17_Chr1g0201781 32.258 93 60 2 156 248 69 158 4.17e-13 67.0
Msa0174550 MtrunA17_Chr1g0201781 36.082 97 55 4 46 141 78 168 8.31e-11 60.5
Msa0174550 MtrunA17_Chr3g0125821 35.955 89 55 1 145 233 66 152 1.22e-12 65.9
Msa0174550 MtrunA17_Chr2g0331681 34.513 113 70 3 34 144 67 177 1.24e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174550 AT2G47470.1 78.788 330 70 0 34 363 28 357 0.0 546
Msa0174550 AT2G47470.4 73.939 330 60 1 34 363 28 331 7.32e-178 497
Msa0174550 AT2G47470.3 80.576 278 54 0 34 311 28 305 7.23e-168 471
Msa0174550 AT2G47470.2 81.590 239 44 0 34 272 28 266 8.90e-147 416
Msa0174550 AT1G04980.1 34.364 291 151 7 27 297 30 300 3.16e-42 153
Msa0174550 AT2G32920.1 33.681 288 154 7 27 297 28 295 1.43e-41 151
Msa0174550 AT5G60640.3 34.884 172 92 4 30 200 104 256 8.23e-23 100
Msa0174550 AT5G60640.3 46.591 88 45 1 149 236 379 464 1.00e-19 90.9
Msa0174550 AT5G60640.3 34.028 144 86 4 29 167 377 516 1.77e-14 75.1
Msa0174550 AT5G60640.1 34.884 172 92 4 30 200 104 256 1.01e-22 100
Msa0174550 AT5G60640.1 34.375 192 107 8 59 236 342 528 8.10e-22 97.4
Msa0174550 AT5G60640.1 34.028 144 86 4 29 167 441 580 2.38e-14 74.7
Msa0174550 AT5G60640.2 34.884 172 92 4 30 200 104 256 1.01e-22 99.8
Msa0174550 AT5G60640.2 34.921 189 104 8 62 236 345 528 8.73e-22 97.1
Msa0174550 AT5G60640.2 40.909 88 45 3 29 113 441 524 5.20e-13 70.5
Msa0174550 AT1G21750.2 47.826 92 45 2 168 256 50 141 7.70e-21 94.0
Msa0174550 AT1G21750.2 34.752 141 77 4 12 137 1 141 2.30e-20 92.8
Msa0174550 AT1G21750.2 41.748 103 59 1 149 251 376 477 1.99e-18 87.0
Msa0174550 AT1G21750.2 39.450 109 55 2 24 132 380 477 9.38e-15 75.9
Msa0174550 AT1G21750.1 41.284 109 63 1 149 257 376 483 8.60e-21 94.0
Msa0174550 AT1G21750.1 47.826 92 45 2 168 256 50 141 1.10e-20 93.6
Msa0174550 AT1G21750.1 34.752 141 77 4 12 137 1 141 2.79e-20 92.4
Msa0174550 AT1G21750.1 38.261 115 60 2 24 138 380 483 4.45e-15 76.6
Msa0174550 AT3G54960.1 34.043 188 111 6 58 234 337 522 1.04e-20 94.0
Msa0174550 AT3G54960.1 34.659 176 95 5 26 200 96 252 2.91e-18 86.7
Msa0174550 AT3G54960.1 34.028 144 89 4 30 169 438 579 1.96e-14 75.1
Msa0174550 AT3G54960.1 31.429 175 103 6 149 315 101 266 2.46e-14 74.7
Msa0174550 AT1G77510.1 37.190 121 75 1 149 269 374 493 2.28e-20 92.8
Msa0174550 AT1G77510.1 35.714 126 77 3 31 152 31 156 1.25e-18 87.4
Msa0174550 AT1G77510.1 35.338 133 76 4 149 272 31 162 1.63e-18 87.0
Msa0174550 AT1G77510.1 44.186 86 47 1 47 132 391 475 2.94e-15 77.4
Msa0174550 AT3G54960.2 34.659 176 95 5 26 200 96 252 1.97e-18 87.0
Msa0174550 AT3G54960.2 32.911 158 95 5 61 207 340 497 5.27e-15 76.6
Msa0174550 AT3G54960.2 31.429 175 103 6 149 315 101 266 1.93e-14 74.7
Msa0174550 AT1G07960.4 34.400 125 78 3 14 135 8 131 1.39e-17 79.3
Msa0174550 AT1G07960.4 28.571 126 88 2 140 265 18 141 3.79e-16 75.1
Msa0174550 AT1G07960.3 34.400 125 78 3 14 135 8 131 1.39e-17 79.3
Msa0174550 AT1G07960.3 28.571 126 88 2 140 265 18 141 3.79e-16 75.1
Msa0174550 AT1G07960.1 34.400 125 78 3 14 135 8 131 1.39e-17 79.3
Msa0174550 AT1G07960.1 28.571 126 88 2 140 265 18 141 3.79e-16 75.1
Msa0174550 AT1G07960.2 34.400 125 78 3 14 135 8 131 1.39e-17 79.3
Msa0174550 AT1G07960.2 28.571 126 88 2 140 265 18 141 3.79e-16 75.1
Msa0174550 AT1G35620.1 31.667 120 79 2 31 149 34 151 2.47e-15 77.4
Msa0174550 AT1G35620.1 37.607 117 59 4 168 283 52 155 3.99e-14 73.6
Msa0174550 AT4G27080.1 34.454 119 64 2 28 132 140 258 1.38e-13 72.0
Msa0174550 AT4G27080.2 34.454 119 64 2 28 132 192 310 1.73e-13 72.0
Msa0174550 AT2G01270.1 33.577 137 70 5 24 139 30 166 6.22e-13 70.1
Msa0174550 AT1G43560.1 32.979 94 60 2 155 248 66 156 1.04e-12 66.2
Msa0174550 AT1G76760.1 33.766 77 49 1 155 231 71 145 9.68e-12 63.5
Msa0174550 AT3G20560.1 30.769 169 87 7 29 181 141 295 1.99e-11 65.5
Msa0174550 AT1G52260.1 34.021 97 61 2 161 256 90 184 2.04e-11 65.5
Msa0174550 AT1G15020.3 31.884 138 71 6 24 139 36 172 7.66e-11 63.9
Msa0174550 AT1G15020.1 31.884 138 71 6 24 139 36 172 7.66e-11 63.9
Msa0174550 AT1G15020.2 31.884 138 71 6 24 139 36 172 8.16e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATATTATAGAACAATTT+TGG 0.055828 1_4:-60225766 Msa0174550:three_prime_UTR
CTGTTTCCTTCGTTGGTTTA+TGG 0.147838 1_4:-60225667 Msa0174550:three_prime_UTR
ACAACTTCGTTGAAGGTTTC+AGG 0.182439 1_4:+60227725 None:intergenic
CGATGTAGTGATTGCAAATT+TGG 0.193790 1_4:-60227306 Msa0174550:CDS
AGTACTTCTTAGAAACTTTC+AGG 0.203871 1_4:+60226311 None:intergenic
GGCTGGGGATGGTCTAATTT+AGG 0.240134 1_4:-60225418 Msa0174550:three_prime_UTR
CACCGGCTTTGTTGCCCTTT+GGG 0.256628 1_4:+60226914 None:intergenic
CTCAACTTCCTCTTCAATTC+GGG 0.267301 1_4:+60226542 None:intergenic
CAGAAAGAAGAAGATGAAAA+TGG 0.277955 1_4:-60230271 Msa0174550:exon
TATAATTAATCAACGAATAA+AGG 0.281432 1_4:+60225534 None:intergenic
ATTTGGATGCCGACAAATAT+AGG 0.282633 1_4:-60227289 Msa0174550:CDS
TCTACATATGCTTGACTTAA+CGG 0.295936 1_4:-60225928 Msa0174550:exon
TCATCTTCTTCTTTCTGTTT+CGG 0.296011 1_4:+60230277 None:intergenic
CTTGGCAATCAAAACAGATT+TGG 0.298806 1_4:+60228943 None:intergenic
TCACCGGCTTTGTTGCCCTT+TGG 0.302925 1_4:+60226913 None:intergenic
AAGAGTGTGTGCAGCAAATA+TGG 0.310178 1_4:-60228403 Msa0174550:CDS
TCTCAACTTCCTCTTCAATT+CGG 0.333016 1_4:+60226541 None:intergenic
AAACTCAACCAAGACATCTT+TGG 0.333568 1_4:+60227691 None:intergenic
GACATTGACATCAAAATTGC+TGG 0.343255 1_4:-60225842 Msa0174550:three_prime_UTR
TGCAGCAAATATGGCGTCTC+TGG 0.357109 1_4:-60228394 Msa0174550:CDS
CCAAAATTGTTCTATAATAT+AGG 0.359717 1_4:+60225766 None:intergenic
GTCAATTCGTCGGCCTTAGC+AGG 0.363199 1_4:+60225970 None:intergenic
AACAAAGCCGGTGAAGATTA+TGG 0.369872 1_4:-60226904 Msa0174550:CDS
TTGGGTTCTAGAGATCCTTT+TGG 0.375047 1_4:+60228349 None:intergenic
GCAGTGGGACACTAGCTTCC+AGG 0.391290 1_4:+60225886 None:intergenic
TTTGGATGCCGACAAATATA+GGG 0.392085 1_4:-60227288 Msa0174550:CDS
AAGGAAGTTGGTCAAGATAA+AGG 0.392677 1_4:-60230138 Msa0174550:CDS
TTAATACATGACAACTACTA+TGG 0.401254 1_4:-60225620 Msa0174550:three_prime_UTR
AAGAGACTTGGATGACTTTG+TGG 0.405410 1_4:-60226875 Msa0174550:CDS
AGCTCAAGGGTTCTGCTTCT+AGG 0.408451 1_4:-60226518 Msa0174550:intron
GATCTCAGGTAAACTACAAC+GGG 0.409396 1_4:+60225721 None:intergenic
AGTGGAAGACTTGGACGAAT+TGG 0.413484 1_4:-60226613 Msa0174550:CDS
AGCCAGGTCCCTATATTTGT+CGG 0.426037 1_4:+60227280 None:intergenic
ATCCAAGACAACTTCGTTGA+AGG 0.433274 1_4:+60227718 None:intergenic
GAAAATTTCGAGAAGGAAGT+TGG 0.442730 1_4:-60230150 Msa0174550:CDS
TTACAATCTGTTTCCTTCGT+TGG 0.446112 1_4:-60225674 Msa0174550:three_prime_UTR
AACCTTCAACGAAGTTGTCT+TGG 0.447834 1_4:-60227720 Msa0174550:CDS
GAAAATTCCTGTAGGTTTGA+AGG 0.449227 1_4:-60228209 Msa0174550:intron
TCTAAGAAGTACTTGGAGAA+AGG 0.455359 1_4:-60226301 Msa0174550:CDS
TTATGGAGGTGGAAGAGACT+TGG 0.456654 1_4:-60226887 Msa0174550:CDS
GAAAGTTTCTAAGAAGTACT+TGG 0.456740 1_4:-60226308 Msa0174550:CDS
TTCCCAAAGGGCAACAAAGC+CGG 0.473546 1_4:-60226916 Msa0174550:CDS
GCAATTTCTACCATCGATCC+TGG 0.474691 1_4:-60225904 Msa0174550:three_prime_UTR
ACGATAGTTAATGCATCATA+AGG 0.475630 1_4:-60225581 Msa0174550:three_prime_UTR
AAATGGAGATGCATCAGATC+TGG 0.477555 1_4:-60230254 Msa0174550:CDS
CCTAGAACGACTACTTGAAA+AGG 0.487467 1_4:-60226248 Msa0174550:intron
TTCTGTATAGGCTGGTATAG+TGG 0.489871 1_4:-60226631 Msa0174550:intron
TTTCTTGAGGGTCAATTCGT+CGG 0.493083 1_4:+60225960 None:intergenic
TTGGAAACCACTGAATCGTT+GGG 0.493402 1_4:+60228368 None:intergenic
TTTGGAAACCACTGAATCGT+TGG 0.494227 1_4:+60228367 None:intergenic
GCCCTTTGGGAAGAACTTCA+AGG 0.495998 1_4:+60226927 None:intergenic
ACCTTGAAGTTCTTCCCAAA+GGG 0.499568 1_4:-60226928 Msa0174550:CDS
GCCGGTGAAGATTATGGAGG+TGG 0.503383 1_4:-60226898 Msa0174550:CDS
TTATGCAGGTATGATGTAAG+TGG 0.507495 1_4:-60226958 Msa0174550:intron
ACGATTCAGTGGTTTCCAAA+AGG 0.517733 1_4:-60228364 Msa0174550:CDS
CTCTTCAATTCGGGCAAACA+CGG 0.519231 1_4:+60226551 None:intergenic
TACCTTGAAGTTCTTCCCAA+AGG 0.520489 1_4:-60226929 Msa0174550:CDS
TCCACCTCCATAATCTTCAC+CGG 0.524594 1_4:+60226897 None:intergenic
ATAAACTTGTCGCATGAAGA+TGG 0.526846 1_4:-60225643 Msa0174550:three_prime_UTR
GGATGAAACCAAAGATGTCT+TGG 0.528319 1_4:-60227699 Msa0174550:CDS
GGCTGGTATAGTGGAAGACT+TGG 0.534298 1_4:-60226622 Msa0174550:CDS
ACATTGACATCAAAATTGCT+GGG 0.538476 1_4:-60225841 Msa0174550:three_prime_UTR
TCGTTGAGTTCTACGCCCCT+TGG 0.544107 1_4:-60230110 Msa0174550:intron
TGCTGATGACAAAGAGAAGA+AGG 0.546178 1_4:-60226574 Msa0174550:CDS
AAAATTCCTGTAGGTTTGAA+GGG 0.547840 1_4:-60228208 Msa0174550:intron
GCAGTCTATCAGCCCTGCTA+AGG 0.553095 1_4:-60225983 Msa0174550:intron
GGAACAAGTCGAGATGCAAA+AGG 0.557736 1_4:-60226832 Msa0174550:CDS
CGTGTTTGCCCGAATTGAAG+AGG 0.560187 1_4:-60226550 Msa0174550:CDS
AGACTTGGACGAATTGGTAA+AGG 0.570577 1_4:-60226607 Msa0174550:CDS
TCAATTCGTCGGCCTTAGCA+GGG 0.573157 1_4:+60225971 None:intergenic
CAACTACTATGGTTAATACA+AGG 0.573319 1_4:-60225609 Msa0174550:three_prime_UTR
TACAGCTCCATCTCATGTAG+TGG 0.576987 1_4:-60227756 Msa0174550:CDS
GCAGCAAATATGGCGTCTCT+GGG 0.581952 1_4:-60228393 Msa0174550:CDS
TTCATCACAAGGAGCTGCAG+TGG 0.584092 1_4:+60225870 None:intergenic
CTGGGTACCCAACGATTCAG+TGG 0.589603 1_4:-60228375 Msa0174550:CDS
GCTGAGTTTGTAAACACAGA+AGG 0.589800 1_4:-60228164 Msa0174550:CDS
AGAGGAAGTTGAGAAGCTCA+AGG 0.591148 1_4:-60226532 Msa0174550:CDS
GTTAGCACCACTACATGAGA+TGG 0.595533 1_4:+60227749 None:intergenic
GACTGAAGAAAATTTCGAGA+AGG 0.599089 1_4:-60230157 Msa0174550:CDS
ATAATCAGCACGTGCTGTAG+CGG 0.600017 1_4:-60230305 Msa0174550:five_prime_UTR
AAAAGGACAGCTTACTTCTG+AGG 0.602957 1_4:-60226815 Msa0174550:intron
GAGGAAGTTGAGAAGCTCAA+GGG 0.606083 1_4:-60226531 Msa0174550:CDS
TGCCGACAAATATAGGGACC+TGG 0.607166 1_4:-60227282 Msa0174550:CDS
AGCTGTAGCAATCTTCACAT+TGG 0.611470 1_4:+60227772 None:intergenic
ACACTAGCTTCCAGGATCGA+TGG 0.613295 1_4:+60225894 None:intergenic
GCTCCGGAATATGAAAAGCT+CGG 0.615790 1_4:-60228983 Msa0174550:CDS
TTTGGGAAGAACTTCAAGGT+AGG 0.618623 1_4:+60226931 None:intergenic
GCAAGTGATTCTGCAGTGCG+TGG 0.619080 1_4:+60228185 None:intergenic
ATCAGTTTCAGCAGACGACG+TGG 0.623698 1_4:-60230187 Msa0174550:CDS
CGATCTCAGGTAAACTACAA+CGG 0.625933 1_4:+60225720 None:intergenic
TCATCACAAGGAGCTGCAGT+GGG 0.644752 1_4:+60225871 None:intergenic
TTTATACCATAAACCAACGA+AGG 0.674319 1_4:+60225661 None:intergenic
GAGTTTGTAAACACAGAAGG+AGG 0.682221 1_4:-60228161 Msa0174550:intron
AATGTCAAACATTCATCACA+AGG 0.685008 1_4:+60225859 None:intergenic
AAAGCCGGTGAAGATTATGG+AGG 0.748922 1_4:-60226901 Msa0174550:CDS
ATCTCAGGTAAACTACAACG+GGG 0.830776 1_4:+60225722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATATAAAAAAT+TGG - chr1_4:60229083-60229102 Msa0174550:intron 0.0%
!! TAATTATCAAAACTAAATTT+CGG + chr1_4:60225908-60225927 None:intergenic 10.0%
!!! TAGTTTTGATAATTAAATTA+AGG - chr1_4:60225913-60225932 Msa0174550:three_prime_UTR 10.0%
!! CAAAATTAATGATTAAAAAA+TGG + chr1_4:60228200-60228219 None:intergenic 10.0%
!!! TTTTTAATATAAAAAATTGG+CGG - chr1_4:60229086-60229105 Msa0174550:intron 10.0%
!!! TTATACTCTTTTAATAGATA+AGG - chr1_4:60226377-60226396 Msa0174550:intron 15.0%
!!! AATATCTTTTAATAGAATGA+AGG - chr1_4:60226483-60226502 Msa0174550:intron 15.0%
!!! ATATCTTTTAATAGAATGAA+GGG - chr1_4:60226484-60226503 Msa0174550:intron 15.0%
!! AGAACTTTAATTAATAATTC+AGG - chr1_4:60226554-60226573 Msa0174550:CDS 15.0%
!!! TTTTCTTAATCTATAACAAA+TGG + chr1_4:60227056-60227075 None:intergenic 15.0%
!!! TATTATTTTCTAAAAAGTCA+AGG + chr1_4:60227511-60227530 None:intergenic 15.0%
!!! CTATATTATAGAACAATTTT+GGG - chr1_4:60230057-60230076 Msa0174550:intron 15.0%
!!! TATATTATAGAACAATTTTG+GGG - chr1_4:60230058-60230077 Msa0174550:intron 15.0%
!! TATAATTAATCAACGAATAA+AGG + chr1_4:60230291-60230310 None:intergenic 15.0%
!!! ATATTCAGTATTTTAAAACT+TGG - chr1_4:60230383-60230402 Msa0174550:five_prime_UTR 15.0%
!!! TAGTTTTATCATCTGATTTA+CGG - chr1_4:60225792-60225811 Msa0174550:three_prime_UTR 20.0%
!! ATGAATTGTTGTAAATGATA+CGG - chr1_4:60225818-60225837 Msa0174550:three_prime_UTR 20.0%
!! TCTCTAATTATTTGATTGAA+GGG + chr1_4:60225991-60226010 None:intergenic 20.0%
!! TTCTCTAATTATTTGATTGA+AGG + chr1_4:60225992-60226011 None:intergenic 20.0%
!! TAAACTCTACTTATATAACA+TGG + chr1_4:60226086-60226105 None:intergenic 20.0%
!! TCTACATTACAAATTACAAA+GGG + chr1_4:60226633-60226652 None:intergenic 20.0%
!! TTCACTTTATCTGTAATAAT+AGG - chr1_4:60226795-60226814 Msa0174550:intron 20.0%
!!! ATTTCTCTGTATTTTTAGTA+AGG - chr1_4:60227084-60227103 Msa0174550:intron 20.0%
!! TATTAAATCATCAATGAGAA+CGG + chr1_4:60227336-60227355 None:intergenic 20.0%
!!! CTAACTTATTAATTTGCTAT+AGG - chr1_4:60227379-60227398 Msa0174550:intron 20.0%
!!! TTGATATGATTTTATATCTC+AGG - chr1_4:60227531-60227550 Msa0174550:intron 20.0%
!! GTTAATCTAATACTTGATTT+CGG - chr1_4:60227591-60227610 Msa0174550:intron 20.0%
!!! TTTTTGAAGTACTTTAATGT+AGG - chr1_4:60227832-60227851 Msa0174550:intron 20.0%
!! AATGGCAATATGATAATTAT+TGG + chr1_4:60228182-60228201 None:intergenic 20.0%
!!! TATTTTAATGCAAAACAAAG+AGG + chr1_4:60228230-60228249 None:intergenic 20.0%
!! CCAACTTTAAATTGATAAAA+AGG + chr1_4:60228401-60228420 None:intergenic 20.0%
!!! CCTTTTTATCAATTTAAAGT+TGG - chr1_4:60228398-60228417 Msa0174550:CDS 20.0%
!!! AACTTTTTCATAAATCTGAA+GGG + chr1_4:60228473-60228492 None:intergenic 20.0%
!!! TTTTTTTTCTCCATTAGATA+CGG - chr1_4:60229479-60229498 Msa0174550:intron 20.0%
!!! ATTGCAAAAAAGTTATTTCA+AGG + chr1_4:60229695-60229714 None:intergenic 20.0%
!! TTTAATTATTTGGTCGTTAA+AGG - chr1_4:60229740-60229759 Msa0174550:intron 20.0%
!!! TTGTAAAAATTTGATAATCG+TGG - chr1_4:60229790-60229809 Msa0174550:intron 20.0%
!! CCAAAATTGTTCTATAATAT+AGG + chr1_4:60230059-60230078 None:intergenic 20.0%
!!! CCTATATTATAGAACAATTT+TGG - chr1_4:60230056-60230075 Msa0174550:intron 20.0%
! CATCAAATCAAAAGCTAAAA+CGG + chr1_4:60225846-60225865 None:intergenic 25.0%
!! AATTATTAACAATCTAGCTC+AGG - chr1_4:60225956-60225975 Msa0174550:CDS 25.0%
! TATTACAATGATAAGACAGT+AGG - chr1_4:60226029-60226048 Msa0174550:intron 25.0%
!!! ACATGGTTATTTTGTGTTTA+CGG + chr1_4:60226069-60226088 None:intergenic 25.0%
! ACGCATAAGTTTATTTACTA+TGG + chr1_4:60226317-60226336 None:intergenic 25.0%
! CTCTACATTACAAATTACAA+AGG + chr1_4:60226634-60226653 None:intergenic 25.0%
! TTTATCTGTAATAATAGGTG+TGG - chr1_4:60226800-60226819 Msa0174550:intron 25.0%
! TTTCAGTTTAATAATCTCCT+CGG + chr1_4:60227014-60227033 None:intergenic 25.0%
!!! CACACGTAATTTTAAAGTAA+AGG - chr1_4:60227223-60227242 Msa0174550:intron 25.0%
!!! ACGTAATTTTAAAGTAAAGG+CGG - chr1_4:60227226-60227245 Msa0174550:intron 25.0%
! GTTAAGAATATAAATTTCCC+AGG + chr1_4:60227268-60227287 None:intergenic 25.0%
!!! ACTTATTAATTTGCTATAGG+TGG - chr1_4:60227382-60227401 Msa0174550:intron 25.0%
! AAAAAATAGATGTGAAATGC+AGG + chr1_4:60227571-60227590 None:intergenic 25.0%
!!! AGTAACAGATGGTTTTAAAA+CGG + chr1_4:60227696-60227715 None:intergenic 25.0%
! ATAGATATTACAGTAACAGA+TGG + chr1_4:60227707-60227726 None:intergenic 25.0%
!! AAAAAAGTATATGATGCTAC+AGG + chr1_4:60227816-60227835 None:intergenic 25.0%
!!! GATTTTTTTAGTTTCTGTGA+TGG - chr1_4:60227913-60227932 Msa0174550:intron 25.0%
! TTGCAATTGTACTATTGTAA+TGG - chr1_4:60227995-60228014 Msa0174550:intron 25.0%
! ATTGTAAATTAGTAATGTCC+TGG - chr1_4:60228249-60228268 Msa0174550:intron 25.0%
!!! TGAACTTTTGTTATTTTGCA+AGG - chr1_4:60228325-60228344 Msa0174550:intron 25.0%
! TGAAAGAGTTATGTTTAACT+TGG - chr1_4:60228434-60228453 Msa0174550:intron 25.0%
!!! ACTTTTTCATAAATCTGAAG+GGG + chr1_4:60228472-60228491 None:intergenic 25.0%
!!! CAACTTTTTCATAAATCTGA+AGG + chr1_4:60228474-60228493 None:intergenic 25.0%
!!! AACCAACTCTTTTTAAGATT+AGG + chr1_4:60228587-60228606 None:intergenic 25.0%
! ATCATTTCAGAATATTGTCA+TGG - chr1_4:60229339-60229358 Msa0174550:intron 25.0%
!!! TTTTTTTCTCCATTAGATAC+GGG - chr1_4:60229480-60229499 Msa0174550:intron 25.0%
! GTTAAACTTGAATTTCTCTT+TGG - chr1_4:60229667-60229686 Msa0174550:intron 25.0%
!! AGACAATATGTTTTTCTTGA+GGG + chr1_4:60229877-60229896 None:intergenic 25.0%
!! TAGACAATATGTTTTTCTTG+AGG + chr1_4:60229878-60229897 None:intergenic 25.0%
! TTAATACATGACAACTACTA+TGG - chr1_4:60230202-60230221 Msa0174550:CDS 25.0%
TCATCTTCTTCTTTCTGTTT+CGG + chr1_4:60225548-60225567 None:intergenic 30.0%
CAGAAAGAAGAAGATGAAAA+TGG - chr1_4:60225551-60225570 Msa0174550:three_prime_UTR 30.0%
AAGATCGAGAAAATTACCAA+GGG + chr1_4:60225731-60225750 None:intergenic 30.0%
! TTTTCATTCACTAAGTGATG+TGG + chr1_4:60226171-60226190 None:intergenic 30.0%
! TTAGGTAATTTGTCAACACA+TGG - chr1_4:60226213-60226232 Msa0174550:intron 30.0%
! CTGGTTTGCATAAAATAAAC+TGG - chr1_4:60226288-60226307 Msa0174550:CDS 30.0%
! TCATCTCGACTATTTGATTT+AGG - chr1_4:60226431-60226450 Msa0174550:intron 30.0%
!! CCTTAATGGATATAGTGTTT+TGG + chr1_4:60226518-60226537 None:intergenic 30.0%
CCAAAACACTATATCCATTA+AGG - chr1_4:60226515-60226534 Msa0174550:intron 30.0%
!!! ATCCATTAAGGTTTTTGAGT+AGG - chr1_4:60226527-60226546 Msa0174550:CDS 30.0%
TTCCTACTCAAAAACCTTAA+TGG + chr1_4:60226532-60226551 None:intergenic 30.0%
CAGATAAAATTTACTGAGCT+TGG + chr1_4:60226929-60226948 None:intergenic 30.0%
TGAAACTTTGACATTTACCA+GGG - chr1_4:60227029-60227048 Msa0174550:intron 30.0%
!!! TAATTTTAAAGTAAAGGCGG+AGG - chr1_4:60227229-60227248 Msa0174550:intron 30.0%
AGAATATAAATTTCCCAGGA+TGG + chr1_4:60227264-60227283 None:intergenic 30.0%
AAAATTCCTGTAGGTTTGAA+GGG - chr1_4:60227614-60227633 Msa0174550:intron 30.0%
! GAAGTACTTTAATGTAGGAT+TGG - chr1_4:60227837-60227856 Msa0174550:intron 30.0%
! ATCTAAAACTCTAGTATCTC+AGG + chr1_4:60227867-60227886 None:intergenic 30.0%
AAATACACAGAAGAGAGAAA+GGG + chr1_4:60227972-60227991 None:intergenic 30.0%
AAAATACACAGAAGAGAGAA+AGG + chr1_4:60227973-60227992 None:intergenic 30.0%
!! TAATGGATTTCCTAAACAGA+GGG - chr1_4:60228012-60228031 Msa0174550:intron 30.0%
TTTCACAAACATTCCATGAT+TGG + chr1_4:60228281-60228300 None:intergenic 30.0%
!!! TTTTGTTATTTTGCAAGGTG+TGG - chr1_4:60228330-60228349 Msa0174550:intron 30.0%
! AGTTGCTGCAGTTTTTAAAT+CGG - chr1_4:60228489-60228508 Msa0174550:intron 30.0%
TGCCTAATCTTAAAAAGAGT+TGG - chr1_4:60228582-60228601 Msa0174550:intron 30.0%
TAAAAAGTGAAGTCCAATAG+AGG - chr1_4:60228629-60228648 Msa0174550:intron 30.0%
GTAGCAAGAAGAAATAATGT+AGG - chr1_4:60228690-60228709 Msa0174550:intron 30.0%
AATGTAGGTACCAAAACAAA+TGG - chr1_4:60228705-60228724 Msa0174550:intron 30.0%
ATGTAGGTACCAAAACAAAT+GGG - chr1_4:60228706-60228725 Msa0174550:intron 30.0%
! AGCATTTTTCCCATTTGTTT+TGG + chr1_4:60228718-60228737 None:intergenic 30.0%
! TTCTGCAATAACTTTTATGC+AGG - chr1_4:60228850-60228869 Msa0174550:intron 30.0%
! GCTTTTATCAATGAGAAATC+TGG - chr1_4:60228969-60228988 Msa0174550:CDS 30.0%
CAAATTAAACAGTTCTCAAG+GGG + chr1_4:60229384-60229403 None:intergenic 30.0%
GCAAATTAAACAGTTCTCAA+GGG + chr1_4:60229385-60229404 None:intergenic 30.0%
TGCAAATTAAACAGTTCTCA+AGG + chr1_4:60229386-60229405 None:intergenic 30.0%
ATTTGCATGCGTATACTTTA+TGG - chr1_4:60229399-60229418 Msa0174550:intron 30.0%
! TTGCTTTAAGCAACATAACA+GGG + chr1_4:60229432-60229451 None:intergenic 30.0%
! TTTGCTTTAAGCAACATAAC+AGG + chr1_4:60229433-60229452 None:intergenic 30.0%
AGTACTTCTTAGAAACTTTC+AGG + chr1_4:60229514-60229533 None:intergenic 30.0%
!! GAAAGTTTCTAAGAAGTACT+TGG - chr1_4:60229514-60229533 Msa0174550:intron 30.0%
! GAGAAATTCAAGTTTAACCA+TGG + chr1_4:60229665-60229684 None:intergenic 30.0%
AAGGAGATTAAGAATTGAAG+TGG - chr1_4:60229759-60229778 Msa0174550:intron 30.0%
AATGTCAAACATTCATCACA+AGG + chr1_4:60229966-60229985 None:intergenic 30.0%
ACATTGACATCAAAATTGCT+GGG - chr1_4:60229981-60230000 Msa0174550:intron 30.0%
!!! ATAGAACAATTTTGGGGTAA+TGG - chr1_4:60230064-60230083 Msa0174550:intron 30.0%
TTTATACCATAAACCAACGA+AGG + chr1_4:60230164-60230183 None:intergenic 30.0%
CAACTACTATGGTTAATACA+AGG - chr1_4:60230213-60230232 Msa0174550:CDS 30.0%
ACGATAGTTAATGCATCATA+AGG - chr1_4:60230241-60230260 Msa0174550:CDS 30.0%
AACTCAAAAATGAACTCAGA+AGG - chr1_4:60230338-60230357 Msa0174550:five_prime_UTR 30.0%
!!! TCAGTATTTTAAAACTTGGC+TGG - chr1_4:60230387-60230406 Msa0174550:five_prime_UTR 30.0%
!!! CAGTATTTTAAAACTTGGCT+GGG - chr1_4:60230388-60230407 Msa0174550:five_prime_UTR 30.0%
!!! AGTATTTTAAAACTTGGCTG+GGG - chr1_4:60230389-60230408 Msa0174550:five_prime_UTR 30.0%
GACTGAAGAAAATTTCGAGA+AGG - chr1_4:60225665-60225684 Msa0174550:three_prime_UTR 35.0%
GAAAATTTCGAGAAGGAAGT+TGG - chr1_4:60225672-60225691 Msa0174550:three_prime_UTR 35.0%
! AAGGAAGTTGGTCAAGATAA+AGG - chr1_4:60225684-60225703 Msa0174550:three_prime_UTR 35.0%
AGATCGAGAAAATTACCAAG+GGG + chr1_4:60225730-60225749 None:intergenic 35.0%
GAAGATCGAGAAAATTACCA+AGG + chr1_4:60225732-60225751 None:intergenic 35.0%
!! TTTTTCTGATTCGCTTCGAT+CGG - chr1_4:60225755-60225774 Msa0174550:three_prime_UTR 35.0%
AAAAACACATGCCTTGTCAT+AGG - chr1_4:60226187-60226206 Msa0174550:intron 35.0%
TTACCTAATGACCTATGACA+AGG + chr1_4:60226201-60226220 None:intergenic 35.0%
!! GATTCTCTTGGGTTGAATAT+AGG - chr1_4:60226345-60226364 Msa0174550:intron 35.0%
AGTAAGTGTTATCTCTAGCT+TGG - chr1_4:60226689-60226708 Msa0174550:intron 35.0%
! TTACCGAGCTTTTCATATTC+CGG + chr1_4:60226845-60226864 None:intergenic 35.0%
CTTGGCAATCAAAACAGATT+TGG + chr1_4:60226882-60226901 None:intergenic 35.0%
!!! CAAATCTGTTTTGATTGCCA+AGG - chr1_4:60226880-60226899 Msa0174550:CDS 35.0%
! AATTTACTGAGCTTGGTAAC+AGG + chr1_4:60226922-60226941 None:intergenic 35.0%
CTGAAACTTTGACATTTACC+AGG - chr1_4:60227028-60227047 Msa0174550:intron 35.0%
AATCTATAACAAATGGACCC+TGG + chr1_4:60227049-60227068 None:intergenic 35.0%
ATCAAGTTCAAGCACAAAGA+AGG + chr1_4:60227301-60227320 None:intergenic 35.0%
!!! TCAAGGTCTTCTCACTTTTT+GGG + chr1_4:60227494-60227513 None:intergenic 35.0%
TGATTTCGGAAAATTCCTGT+AGG - chr1_4:60227605-60227624 Msa0174550:intron 35.0%
GAAAATTCCTGTAGGTTTGA+AGG - chr1_4:60227613-60227632 Msa0174550:intron 35.0%
ACATGTTTGTGTAACTTCCA+AGG - chr1_4:60227750-60227769 Msa0174550:CDS 35.0%
GTCTTTGTGATATTTCCGAA+GGG + chr1_4:60227789-60227808 None:intergenic 35.0%
AGTATATGATGCTACAGGAT+GGG + chr1_4:60227811-60227830 None:intergenic 35.0%
AAGTATATGATGCTACAGGA+TGG + chr1_4:60227812-60227831 None:intergenic 35.0%
!! TGCGCAGATTTTGATGATTT+AGG + chr1_4:60227890-60227909 None:intergenic 35.0%
TGTTGAGCATAACTTTAGCA+TGG - chr1_4:60227936-60227955 Msa0174550:intron 35.0%
AATACACAGAAGAGAGAAAG+GGG + chr1_4:60227971-60227990 None:intergenic 35.0%
!! GTAATGGATTTCCTAAACAG+AGG - chr1_4:60228011-60228030 Msa0174550:intron 35.0%
AAACTCAACCAAGACATCTT+TGG + chr1_4:60228134-60228153 None:intergenic 35.0%
CTGCAATGATATCAACTTAC+AGG + chr1_4:60228375-60228394 None:intergenic 35.0%
CGATGTAGTGATTGCAAATT+TGG - chr1_4:60228516-60228535 Msa0174550:intron 35.0%
ATTTGGATGCCGACAAATAT+AGG - chr1_4:60228533-60228552 Msa0174550:intron 35.0%
TTTGGATGCCGACAAATATA+GGG - chr1_4:60228534-60228553 Msa0174550:intron 35.0%
!! CTAAAACTTACTTTTCAGCC+AGG + chr1_4:60228561-60228580 None:intergenic 35.0%
CAATAGAGGTCAGATTGTTT+GGG - chr1_4:60228643-60228662 Msa0174550:intron 35.0%
AATAGAGGTCAGATTGTTTG+GGG - chr1_4:60228644-60228663 Msa0174550:intron 35.0%
TTATGCAGGTATGATGTAAG+TGG - chr1_4:60228864-60228883 Msa0174550:intron 35.0%
ATATAAAAAATTGGCGGCAG+TGG - chr1_4:60229092-60229111 Msa0174550:intron 35.0%
! CGCACTTGATATTTCTGTAT+AGG - chr1_4:60229179-60229198 Msa0174550:intron 35.0%
! CTTGATATTTCTGTATAGGC+TGG - chr1_4:60229183-60229202 Msa0174550:intron 35.0%
TCTCAACTTCCTCTTCAATT+CGG + chr1_4:60229284-60229303 None:intergenic 35.0%
GTAAATCTTCCCGTATCTAA+TGG + chr1_4:60229492-60229511 None:intergenic 35.0%
!! TCTAAGAAGTACTTGGAGAA+AGG - chr1_4:60229521-60229540 Msa0174550:intron 35.0%
TGCATCAAGTGAAACTTTCA+AGG + chr1_4:60229628-60229647 None:intergenic 35.0%
GCATGAAATGATAAGTTCCA+TGG - chr1_4:60229645-60229664 Msa0174550:intron 35.0%
GACATTGACATCAAAATTGC+TGG - chr1_4:60229980-60229999 Msa0174550:intron 35.0%
TTACAATCTGTTTCCTTCGT+TGG - chr1_4:60230148-60230167 Msa0174550:CDS 35.0%
ATAAACTTGTCGCATGAAGA+TGG - chr1_4:60230179-60230198 Msa0174550:CDS 35.0%
! CTTTTCTACGTTTAGTCACG+TGG + chr1_4:60225449-60225468 None:intergenic 40.0%
AAATGGAGATGCATCAGATC+TGG - chr1_4:60225568-60225587 Msa0174550:three_prime_UTR 40.0%
ATGCCTTGTCATAGGTCATT+AGG - chr1_4:60226195-60226214 Msa0174550:intron 40.0%
ATAAATACGACCATGTGCTC+TGG - chr1_4:60226269-60226288 Msa0174550:CDS 40.0%
TTTATGCAAACCAGAGCACA+TGG + chr1_4:60226282-60226301 None:intergenic 40.0%
CGTCTCAATGTGATTCTCTT+GGG - chr1_4:60226334-60226353 Msa0174550:intron 40.0%
GTTCTTATTGCGAAGCATGT+TGG - chr1_4:60226967-60226986 Msa0174550:intron 40.0%
! AAGAGTGTGTGCAGCAAATA+TGG - chr1_4:60227419-60227438 Msa0174550:intron 40.0%
TTGGAAACCACTGAATCGTT+GGG + chr1_4:60227457-60227476 None:intergenic 40.0%
TTTGGAAACCACTGAATCGT+TGG + chr1_4:60227458-60227477 None:intergenic 40.0%
ACGATTCAGTGGTTTCCAAA+AGG - chr1_4:60227458-60227477 Msa0174550:intron 40.0%
!!! TTGGGTTCTAGAGATCCTTT+TGG + chr1_4:60227476-60227495 None:intergenic 40.0%
!! GTCAAGGTCTTCTCACTTTT+TGG + chr1_4:60227495-60227514 None:intergenic 40.0%
GCTGAGTTTGTAAACACAGA+AGG - chr1_4:60227658-60227677 Msa0174550:intron 40.0%
GAGTTTGTAAACACAGAAGG+AGG - chr1_4:60227661-60227680 Msa0174550:intron 40.0%
TTTGTGATATTTCCGAAGGG+TGG + chr1_4:60227786-60227805 None:intergenic 40.0%
GGTCTTTGTGATATTTCCGA+AGG + chr1_4:60227790-60227809 None:intergenic 40.0%
GTAAGTCAAACCCTCTGTTT+AGG + chr1_4:60228025-60228044 None:intergenic 40.0%
! AAACAGAGGGTTTGACTTAC+AGG - chr1_4:60228025-60228044 Msa0174550:intron 40.0%
AGCTGTAGCAATCTTCACAT+TGG + chr1_4:60228053-60228072 None:intergenic 40.0%
ACAACTTCGTTGAAGGTTTC+AGG + chr1_4:60228100-60228119 None:intergenic 40.0%
AACCTTCAACGAAGTTGTCT+TGG - chr1_4:60228102-60228121 Msa0174550:intron 40.0%
ATCCAAGACAACTTCGTTGA+AGG + chr1_4:60228107-60228126 None:intergenic 40.0%
GGATGAAACCAAAGATGTCT+TGG - chr1_4:60228123-60228142 Msa0174550:intron 40.0%
!! TGGTTGAGTTTTATGCACCA+TGG - chr1_4:60228143-60228162 Msa0174550:intron 40.0%
TTCCATGATTGGATGAAACC+AGG + chr1_4:60228270-60228289 None:intergenic 40.0%
! TGCTGCAGTTTTTAAATCGG+AGG - chr1_4:60228492-60228511 Msa0174550:intron 40.0%
CCAAACAATCTGACCTCTAT+TGG + chr1_4:60228645-60228664 None:intergenic 40.0%
CCAATAGAGGTCAGATTGTT+TGG - chr1_4:60228642-60228661 Msa0174550:intron 40.0%
ATCATGCAGTTTGGTCTAGT+AGG + chr1_4:60228670-60228689 None:intergenic 40.0%
TCTTGCTACATCATGCAGTT+TGG + chr1_4:60228679-60228698 None:intergenic 40.0%
TTTGGGAAGAACTTCAAGGT+AGG + chr1_4:60228894-60228913 None:intergenic 40.0%
TACCTTGAAGTTCTTCCCAA+AGG - chr1_4:60228893-60228912 Msa0174550:intron 40.0%
ACCTTGAAGTTCTTCCCAAA+GGG - chr1_4:60228894-60228913 Msa0174550:intron 40.0%
AACAAAGCCGGTGAAGATTA+TGG - chr1_4:60228918-60228937 Msa0174550:intron 40.0%
AAGAGACTTGGATGACTTTG+TGG - chr1_4:60228947-60228966 Msa0174550:CDS 40.0%
AAAAGGACAGCTTACTTCTG+AGG - chr1_4:60229007-60229026 Msa0174550:CDS 40.0%
TTCTGTATAGGCTGGTATAG+TGG - chr1_4:60229191-60229210 Msa0174550:intron 40.0%
AGACTTGGACGAATTGGTAA+AGG - chr1_4:60229215-60229234 Msa0174550:intron 40.0%
TGCTGATGACAAAGAGAAGA+AGG - chr1_4:60229248-60229267 Msa0174550:intron 40.0%
CTCAACTTCCTCTTCAATTC+GGG + chr1_4:60229283-60229302 None:intergenic 40.0%
!!! CCTTTTCAAGTAGTCGTTCT+AGG + chr1_4:60229577-60229596 None:intergenic 40.0%
CCTAGAACGACTACTTGAAA+AGG - chr1_4:60229574-60229593 Msa0174550:intron 40.0%
TTTCTTGAGGGTCAATTCGT+CGG + chr1_4:60229865-60229884 None:intergenic 40.0%
ATCTCAGGTAAACTACAACG+GGG + chr1_4:60230103-60230122 None:intergenic 40.0%
GATCTCAGGTAAACTACAAC+GGG + chr1_4:60230104-60230123 None:intergenic 40.0%
CGATCTCAGGTAAACTACAA+CGG + chr1_4:60230105-60230124 None:intergenic 40.0%
CCTTCTCAAAAATCGATCTC+AGG + chr1_4:60230118-60230137 None:intergenic 40.0%
!! CCTGAGATCGATTTTTGAGA+AGG - chr1_4:60230115-60230134 Msa0174550:CDS 40.0%
!! CTGTTTCCTTCGTTGGTTTA+TGG - chr1_4:60230155-60230174 Msa0174550:CDS 40.0%
!!! TTTTAAAACTTGGCTGGGGA+TGG - chr1_4:60230393-60230412 Msa0174550:five_prime_UTR 40.0%
ATAATCAGCACGTGCTGTAG+CGG - chr1_4:60225517-60225536 Msa0174550:three_prime_UTR 45.0%
GCGTCTCAATGTGATTCTCT+TGG - chr1_4:60226333-60226352 Msa0174550:intron 45.0%
! ACACTGCAAAAAGCTTGCTC+CGG - chr1_4:60226823-60226842 Msa0174550:CDS 45.0%
GCTCCGGAATATGAAAAGCT+CGG - chr1_4:60226839-60226858 Msa0174550:CDS 45.0%
! TTGGTAACAGGAAAACCAGG+GGG + chr1_4:60226910-60226929 None:intergenic 45.0%
! CTTGGTAACAGGAAAACCAG+GGG + chr1_4:60226911-60226930 None:intergenic 45.0%
! GCTTGGTAACAGGAAAACCA+GGG + chr1_4:60226912-60226931 None:intergenic 45.0%
! AGCTTGGTAACAGGAAAACC+AGG + chr1_4:60226913-60226932 None:intergenic 45.0%
ATTGCGAAGCATGTTGGTGT+TGG - chr1_4:60226973-60226992 Msa0174550:intron 45.0%
! AATCTCCTCGGTTTGTAGAC+AGG + chr1_4:60227002-60227021 None:intergenic 45.0%
ACACACACACAGAATGCAGA+AGG + chr1_4:60227132-60227151 None:intergenic 45.0%
TACAGCTCCATCTCATGTAG+TGG - chr1_4:60228066-60228085 Msa0174550:intron 45.0%
GTTAGCACCACTACATGAGA+TGG + chr1_4:60228076-60228095 None:intergenic 45.0%
TTGGTGAGTAGTGAGTACCA+TGG + chr1_4:60228163-60228182 None:intergenic 45.0%
GTCCTGGTTTCATCCAATCA+TGG - chr1_4:60228265-60228284 Msa0174550:intron 45.0%
AGCCAGGTCCCTATATTTGT+CGG + chr1_4:60228545-60228564 None:intergenic 45.0%
AGCTGCAGTTAGTGAAGACT+TGG - chr1_4:60228791-60228810 Msa0174550:intron 45.0%
TGCAGTTAGTGAAGACTTGG+AGG - chr1_4:60228794-60228813 Msa0174550:intron 45.0%
AGTTAGTGAAGACTTGGAGG+TGG - chr1_4:60228797-60228816 Msa0174550:intron 45.0%
AAAGCCGGTGAAGATTATGG+AGG - chr1_4:60228921-60228940 Msa0174550:intron 45.0%
TCCACCTCCATAATCTTCAC+CGG + chr1_4:60228928-60228947 None:intergenic 45.0%
TTATGGAGGTGGAAGAGACT+TGG - chr1_4:60228935-60228954 Msa0174550:intron 45.0%
GGAACAAGTCGAGATGCAAA+AGG - chr1_4:60228990-60229009 Msa0174550:CDS 45.0%
AGTGGAAGACTTGGACGAAT+TGG - chr1_4:60229209-60229228 Msa0174550:intron 45.0%
CTCTTCAATTCGGGCAAACA+CGG + chr1_4:60229274-60229293 None:intergenic 45.0%
AGAGGAAGTTGAGAAGCTCA+AGG - chr1_4:60229290-60229309 Msa0174550:intron 45.0%
GAGGAAGTTGAGAAGCTCAA+GGG - chr1_4:60229291-60229310 Msa0174550:intron 45.0%
GCAATTTCTACCATCGATCC+TGG - chr1_4:60229918-60229937 Msa0174550:intron 45.0%
! TTGCTGGGAGATTTTCAACG+TGG - chr1_4:60229996-60230015 Msa0174550:intron 45.0%
!!! TTTTACAAATTTTAATTATT+TGG - chr1_4:60229730-60229749 Msa0174550:intron 5.0%
ATCAGTTTCAGCAGACGACG+TGG - chr1_4:60225635-60225654 Msa0174550:three_prime_UTR 50.0%
GGATACCTGTCTACAAACCG+AGG - chr1_4:60226994-60227013 Msa0174550:intron 50.0%
AAGTAAAGGCGGAGGAGAGT+TGG - chr1_4:60227237-60227256 Msa0174550:intron 50.0%
TGCAGCAAATATGGCGTCTC+TGG - chr1_4:60227428-60227447 Msa0174550:intron 50.0%
GCAGCAAATATGGCGTCTCT+GGG - chr1_4:60227429-60227448 Msa0174550:intron 50.0%
AGGGTGGCACTATGTTTCCT+TGG + chr1_4:60227770-60227789 None:intergenic 50.0%
GGAAACATAGTGCCACCCTT+CGG - chr1_4:60227771-60227790 Msa0174550:CDS 50.0%
TGCCGACAAATATAGGGACC+TGG - chr1_4:60228540-60228559 Msa0174550:intron 50.0%
! GCCCTTTGGGAAGAACTTCA+AGG + chr1_4:60228898-60228917 None:intergenic 50.0%
TTCCCAAAGGGCAACAAAGC+CGG - chr1_4:60228906-60228925 Msa0174550:intron 50.0%
AAAATTGGCGGCAGTGGACA+TGG - chr1_4:60229098-60229117 Msa0174550:intron 50.0%
! GGCTGGTATAGTGGAAGACT+TGG - chr1_4:60229200-60229219 Msa0174550:intron 50.0%
CGTGTTTGCCCGAATTGAAG+AGG - chr1_4:60229272-60229291 Msa0174550:intron 50.0%
AGCTCAAGGGTTCTGCTTCT+AGG - chr1_4:60229304-60229323 Msa0174550:intron 50.0%
TCAATTCGTCGGCCTTAGCA+GGG + chr1_4:60229854-60229873 None:intergenic 50.0%
! ACACTAGCTTCCAGGATCGA+TGG + chr1_4:60229931-60229950 None:intergenic 50.0%
TCATCACAAGGAGCTGCAGT+GGG + chr1_4:60229954-60229973 None:intergenic 50.0%
TTCATCACAAGGAGCTGCAG+TGG + chr1_4:60229955-60229974 None:intergenic 50.0%
GGCTGGGGATGGTCTAATTT+AGG - chr1_4:60230404-60230423 Msa0174550:five_prime_UTR 50.0%
TCGTTGAGTTCTACGCCCCT+TGG - chr1_4:60225712-60225731 Msa0174550:three_prime_UTR 55.0%
GAGGAGAGTTGGACCATCCT+GGG - chr1_4:60227248-60227267 Msa0174550:intron 55.0%
CTGGGTACCCAACGATTCAG+TGG - chr1_4:60227447-60227466 Msa0174550:intron 55.0%
GCAAGTGATTCTGCAGTGCG+TGG + chr1_4:60227640-60227659 None:intergenic 55.0%
!! CACCGGCTTTGTTGCCCTTT+GGG + chr1_4:60228911-60228930 None:intergenic 55.0%
!! TCACCGGCTTTGTTGCCCTT+TGG + chr1_4:60228912-60228931 None:intergenic 55.0%
GCCGGTGAAGATTATGGAGG+TGG - chr1_4:60228924-60228943 Msa0174550:intron 55.0%
GCAGTGGACATGGTGGCTTT+GGG - chr1_4:60229108-60229127 Msa0174550:intron 55.0%
! CAGTGGACATGGTGGCTTTG+GGG - chr1_4:60229109-60229128 Msa0174550:intron 55.0%
GCAGTCTATCAGCCCTGCTA+AGG - chr1_4:60229839-60229858 Msa0174550:intron 55.0%
GTCAATTCGTCGGCCTTAGC+AGG + chr1_4:60229855-60229874 None:intergenic 55.0%
GAAAACCAGGGGGCTGACCT+TGG + chr1_4:60226900-60226919 None:intergenic 60.0%
GGAGGAGAGTTGGACCATCC+TGG - chr1_4:60227247-60227266 Msa0174550:intron 60.0%
GCGTGGCCCTTCAAACCTAC+AGG + chr1_4:60227623-60227642 None:intergenic 60.0%
ATTGGCGGCAGTGGACATGG+TGG - chr1_4:60229101-60229120 Msa0174550:intron 60.0%
GGCAGTGGACATGGTGGCTT+TGG - chr1_4:60229107-60229126 Msa0174550:intron 60.0%
!! TGGACATGGTGGCTTTGGGG+TGG - chr1_4:60229112-60229131 Msa0174550:intron 60.0%
!! GGACATGGTGGCTTTGGGGT+GGG - chr1_4:60229113-60229132 Msa0174550:intron 60.0%
!! GGTGGCTTTGGGGTGGGATA+AGG - chr1_4:60229119-60229138 Msa0174550:intron 60.0%
! GCAGTGGGACACTAGCTTCC+AGG + chr1_4:60229939-60229958 None:intergenic 60.0%
GATTGCCAAGGTCAGCCCCC+TGG - chr1_4:60226892-60226911 Msa0174550:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60225411 60230433 60225411 ID=Msa0174550;Name=Msa0174550
chr1_4 mRNA 60225411 60230433 60225411 ID=Msa0174550-mRNA-1;Parent=Msa0174550;Name=Msa0174550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|1|1|11|525|364
chr1_4 exon 60225411 60226001 60225411 ID=Msa0174550-mRNA-1:exon:19054;Parent=Msa0174550-mRNA-1
chr1_4 exon 60226249 60226348 60226249 ID=Msa0174550-mRNA-1:exon:19053;Parent=Msa0174550-mRNA-1
chr1_4 exon 60226519 60226643 60226519 ID=Msa0174550-mRNA-1:exon:19052;Parent=Msa0174550-mRNA-1
chr1_4 exon 60226816 60226972 60226816 ID=Msa0174550-mRNA-1:exon:19051;Parent=Msa0174550-mRNA-1
chr1_4 exon 60227275 60227366 60227275 ID=Msa0174550-mRNA-1:exon:19050;Parent=Msa0174550-mRNA-1
chr1_4 exon 60227470 60227497 60227470 ID=Msa0174550-mRNA-1:exon:19049;Parent=Msa0174550-mRNA-1
chr1_4 exon 60227680 60227797 60227680 ID=Msa0174550-mRNA-1:exon:19048;Parent=Msa0174550-mRNA-1
chr1_4 exon 60228162 60228217 60228162 ID=Msa0174550-mRNA-1:exon:19047;Parent=Msa0174550-mRNA-1
chr1_4 exon 60228346 60228443 60228346 ID=Msa0174550-mRNA-1:exon:19046;Parent=Msa0174550-mRNA-1
chr1_4 exon 60228943 60229027 60228943 ID=Msa0174550-mRNA-1:exon:19045;Parent=Msa0174550-mRNA-1
chr1_4 exon 60230111 60230433 60230111 ID=Msa0174550-mRNA-1:exon:19044;Parent=Msa0174550-mRNA-1
chr1_4 five_prime_UTR 60230281 60230433 60230281 ID=Msa0174550-mRNA-1:five_prime_utr;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60230111 60230280 60230111 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60228943 60229027 60228943 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60228346 60228443 60228346 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60228162 60228217 60228162 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60227680 60227797 60227680 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60227470 60227497 60227470 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60227275 60227366 60227275 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60226816 60226972 60226816 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60226519 60226643 60226519 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60226249 60226348 60226249 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 CDS 60225936 60226001 60225936 ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1
chr1_4 three_prime_UTR 60225411 60225935 60225411 ID=Msa0174550-mRNA-1:three_prime_utr;Parent=Msa0174550-mRNA-1
Gene Sequence

>Msa0174550

ATGAAAATGGAGATGCATCAGATCTGGAGCAGAATAGCATTAGCATCGTTCGCGTTTGCAATTCTATTCGTATCAGTTTCAGCAGACGACGTGGTTGTGCTGACTGAAGAAAATTTCGAGAAGGAAGTTGGTCAAGATAAAGGAGCTCTCGTTGAGTTCTACGCCCCTTGGTGTGGACACTGCAAAAAGCTTGCTCCGGAATATGAAAAGCTCGGTAACAGCTTCAAGAAAGCCAAATCTGTTTTGATTGCCAAGGTGGACTGTGATGAGCATAAGAGTGTGTGCAGCAAATATGGCGTCTCTGGGTACCCAACGATTCAGTGGTTTCCAAAAGGATCTCTAGAACCCAAAAAGTTTGAAGGGCCACGCACTGCAGAATCACTTGCTGAGTTTGTAAACACAGAAGGAGGAACCAATGTGAAGATTGCTACAGCTCCATCTCATGTAGTGGTGCTAACACCTGAAACCTTCAACGAAGTTGTCTTGGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCATGGTGTGGACATTGCAAAAGTCTTGCTCCTATTTATGAAAAAGTTGCTGCAGTTTTTAAATCGGAGGACGATGTAGTGATTGCAAATTTGGATGCCGACAAATATAGGGACCTGGCTGAAAAGTATGATGTAAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCCGGTGAAGATTATGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGCAAAAGGACAGCTTACTTCTGAGGCTGGTATAGTGGAAGACTTGGACGAATTGGTAAAGGAGTTTGTAGCTGCTGATGACAAAGAGAAGAAGGCCGTGTTTGCCCGAATTGAAGAGGAAGTTGAGAAGCTCAAGGGTTCTGCTTCTAGATACGGGAAGATTTACCTGAAAGTTTCTAAGAAGTACTTGGAGAAAGGTTCTGATTATGCTAAGAATGAAATTCAACGCCTAGAACGACTACTTGAAAAGTCTATCAGCCCTGCTAAGGCCGACGAATTGACCCTCAAGAAAAACATATTGTCTACATATGCTTGA

Protein sequence

>Msa0174550

MKMEMHQIWSRIALASFAFAILFVSVSADDVVVLTEENFEKEVGQDKGALVEFYAPWCGHCKKLAPEYEKLGNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVNTEGGTNVKIATAPSHVVVLTPETFNEVVLDETKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAADDKEKKAVFARIEEEVEKLKGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTYA*