Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0174550 | sp|P38661|PDIA6_MEDSA | 98.077 | 364 | 7 | 0 | 1 | 364 | 1 | 364 | 0.0 | 724 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0174550 | G7IDU4 | 98.901 | 364 | 4 | 0 | 1 | 364 | 1 | 364 | 0.0 | 730 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030600 | Msa0174550 | 0.973308 | 3.291691e-136 | -8.615850e-47 |
Msa0138700 | Msa0174550 | 0.942143 | 1.210705e-101 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0174550 | MtrunA17_Chr1g0194961 | 98.901 | 364 | 4 | 0 | 1 | 364 | 1 | 364 | 0.0 | 730 |
Msa0174550 | MtrunA17_Chr7g0271721 | 68.820 | 356 | 107 | 1 | 8 | 363 | 3 | 354 | 0.0 | 516 |
Msa0174550 | MtrunA17_Chr5g0438731 | 33.829 | 269 | 153 | 6 | 10 | 258 | 36 | 299 | 4.61e-40 | 147 |
Msa0174550 | MtrunA17_Chr5g0438731 | 40.741 | 135 | 72 | 4 | 27 | 159 | 188 | 316 | 2.87e-20 | 91.7 |
Msa0174550 | MtrunA17_Chr2g0287471 | 50.000 | 104 | 49 | 2 | 147 | 250 | 28 | 128 | 6.67e-24 | 100 |
Msa0174550 | MtrunA17_Chr2g0287471 | 38.583 | 127 | 70 | 4 | 10 | 131 | 5 | 128 | 2.24e-17 | 82.4 |
Msa0174550 | MtrunA17_Chr2g0326581 | 35.616 | 219 | 119 | 8 | 31 | 234 | 290 | 501 | 8.10e-24 | 102 |
Msa0174550 | MtrunA17_Chr2g0326581 | 37.209 | 172 | 88 | 4 | 30 | 200 | 79 | 231 | 4.27e-19 | 88.6 |
Msa0174550 | MtrunA17_Chr2g0326581 | 38.857 | 175 | 90 | 7 | 149 | 315 | 80 | 245 | 8.53e-18 | 84.7 |
Msa0174550 | MtrunA17_Chr2g0326581 | 34.483 | 116 | 71 | 3 | 30 | 142 | 417 | 530 | 1.98e-14 | 74.7 |
Msa0174550 | MtrunA17_Chr1g0200731 | 40.000 | 120 | 69 | 2 | 31 | 149 | 95 | 212 | 3.19e-22 | 97.8 |
Msa0174550 | MtrunA17_Chr3g0124851 | 46.602 | 103 | 54 | 1 | 149 | 251 | 379 | 480 | 4.68e-22 | 97.4 |
Msa0174550 | MtrunA17_Chr3g0124851 | 47.872 | 94 | 46 | 2 | 168 | 258 | 53 | 146 | 9.51e-21 | 93.6 |
Msa0174550 | MtrunA17_Chr3g0124851 | 37.956 | 137 | 75 | 4 | 8 | 137 | 11 | 144 | 3.19e-20 | 92.0 |
Msa0174550 | MtrunA17_Chr3g0124851 | 41.860 | 86 | 49 | 1 | 47 | 132 | 396 | 480 | 9.31e-16 | 78.6 |
Msa0174550 | MtrunA17_Chr4g0029181 | 44.318 | 88 | 47 | 1 | 149 | 236 | 440 | 525 | 5.60e-18 | 85.5 |
Msa0174550 | MtrunA17_Chr4g0029181 | 38.636 | 132 | 77 | 3 | 26 | 156 | 97 | 225 | 1.59e-16 | 80.9 |
Msa0174550 | MtrunA17_Chr4g0029181 | 43.885 | 139 | 66 | 5 | 149 | 279 | 102 | 236 | 2.33e-16 | 80.5 |
Msa0174550 | MtrunA17_Chr4g0029181 | 34.259 | 108 | 62 | 4 | 30 | 132 | 439 | 542 | 1.55e-12 | 68.6 |
Msa0174550 | MtrunA17_Chr4g0041801 | 33.913 | 115 | 62 | 2 | 34 | 134 | 146 | 260 | 6.70e-15 | 75.9 |
Msa0174550 | MtrunA17_Chr4g0041801 | 30.851 | 94 | 51 | 2 | 169 | 248 | 162 | 255 | 4.15e-11 | 64.3 |
Msa0174550 | MtrunA17_Chr2g0326241 | 33.884 | 121 | 77 | 3 | 18 | 136 | 27 | 146 | 8.47e-15 | 71.6 |
Msa0174550 | MtrunA17_Chr2g0326241 | 29.524 | 105 | 73 | 1 | 147 | 251 | 39 | 142 | 5.77e-11 | 60.5 |
Msa0174550 | MtrunA17_Chr1g0211871 | 39.535 | 86 | 46 | 2 | 157 | 242 | 78 | 157 | 2.06e-13 | 68.2 |
Msa0174550 | MtrunA17_Chr1g0201781 | 32.258 | 93 | 60 | 2 | 156 | 248 | 69 | 158 | 4.17e-13 | 67.0 |
Msa0174550 | MtrunA17_Chr1g0201781 | 36.082 | 97 | 55 | 4 | 46 | 141 | 78 | 168 | 8.31e-11 | 60.5 |
Msa0174550 | MtrunA17_Chr3g0125821 | 35.955 | 89 | 55 | 1 | 145 | 233 | 66 | 152 | 1.22e-12 | 65.9 |
Msa0174550 | MtrunA17_Chr2g0331681 | 34.513 | 113 | 70 | 3 | 34 | 144 | 67 | 177 | 1.24e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0174550 | AT2G47470.1 | 78.788 | 330 | 70 | 0 | 34 | 363 | 28 | 357 | 0.0 | 546 |
Msa0174550 | AT2G47470.4 | 73.939 | 330 | 60 | 1 | 34 | 363 | 28 | 331 | 7.32e-178 | 497 |
Msa0174550 | AT2G47470.3 | 80.576 | 278 | 54 | 0 | 34 | 311 | 28 | 305 | 7.23e-168 | 471 |
Msa0174550 | AT2G47470.2 | 81.590 | 239 | 44 | 0 | 34 | 272 | 28 | 266 | 8.90e-147 | 416 |
Msa0174550 | AT1G04980.1 | 34.364 | 291 | 151 | 7 | 27 | 297 | 30 | 300 | 3.16e-42 | 153 |
Msa0174550 | AT2G32920.1 | 33.681 | 288 | 154 | 7 | 27 | 297 | 28 | 295 | 1.43e-41 | 151 |
Msa0174550 | AT5G60640.3 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 8.23e-23 | 100 |
Msa0174550 | AT5G60640.3 | 46.591 | 88 | 45 | 1 | 149 | 236 | 379 | 464 | 1.00e-19 | 90.9 |
Msa0174550 | AT5G60640.3 | 34.028 | 144 | 86 | 4 | 29 | 167 | 377 | 516 | 1.77e-14 | 75.1 |
Msa0174550 | AT5G60640.1 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 1.01e-22 | 100 |
Msa0174550 | AT5G60640.1 | 34.375 | 192 | 107 | 8 | 59 | 236 | 342 | 528 | 8.10e-22 | 97.4 |
Msa0174550 | AT5G60640.1 | 34.028 | 144 | 86 | 4 | 29 | 167 | 441 | 580 | 2.38e-14 | 74.7 |
Msa0174550 | AT5G60640.2 | 34.884 | 172 | 92 | 4 | 30 | 200 | 104 | 256 | 1.01e-22 | 99.8 |
Msa0174550 | AT5G60640.2 | 34.921 | 189 | 104 | 8 | 62 | 236 | 345 | 528 | 8.73e-22 | 97.1 |
Msa0174550 | AT5G60640.2 | 40.909 | 88 | 45 | 3 | 29 | 113 | 441 | 524 | 5.20e-13 | 70.5 |
Msa0174550 | AT1G21750.2 | 47.826 | 92 | 45 | 2 | 168 | 256 | 50 | 141 | 7.70e-21 | 94.0 |
Msa0174550 | AT1G21750.2 | 34.752 | 141 | 77 | 4 | 12 | 137 | 1 | 141 | 2.30e-20 | 92.8 |
Msa0174550 | AT1G21750.2 | 41.748 | 103 | 59 | 1 | 149 | 251 | 376 | 477 | 1.99e-18 | 87.0 |
Msa0174550 | AT1G21750.2 | 39.450 | 109 | 55 | 2 | 24 | 132 | 380 | 477 | 9.38e-15 | 75.9 |
Msa0174550 | AT1G21750.1 | 41.284 | 109 | 63 | 1 | 149 | 257 | 376 | 483 | 8.60e-21 | 94.0 |
Msa0174550 | AT1G21750.1 | 47.826 | 92 | 45 | 2 | 168 | 256 | 50 | 141 | 1.10e-20 | 93.6 |
Msa0174550 | AT1G21750.1 | 34.752 | 141 | 77 | 4 | 12 | 137 | 1 | 141 | 2.79e-20 | 92.4 |
Msa0174550 | AT1G21750.1 | 38.261 | 115 | 60 | 2 | 24 | 138 | 380 | 483 | 4.45e-15 | 76.6 |
Msa0174550 | AT3G54960.1 | 34.043 | 188 | 111 | 6 | 58 | 234 | 337 | 522 | 1.04e-20 | 94.0 |
Msa0174550 | AT3G54960.1 | 34.659 | 176 | 95 | 5 | 26 | 200 | 96 | 252 | 2.91e-18 | 86.7 |
Msa0174550 | AT3G54960.1 | 34.028 | 144 | 89 | 4 | 30 | 169 | 438 | 579 | 1.96e-14 | 75.1 |
Msa0174550 | AT3G54960.1 | 31.429 | 175 | 103 | 6 | 149 | 315 | 101 | 266 | 2.46e-14 | 74.7 |
Msa0174550 | AT1G77510.1 | 37.190 | 121 | 75 | 1 | 149 | 269 | 374 | 493 | 2.28e-20 | 92.8 |
Msa0174550 | AT1G77510.1 | 35.714 | 126 | 77 | 3 | 31 | 152 | 31 | 156 | 1.25e-18 | 87.4 |
Msa0174550 | AT1G77510.1 | 35.338 | 133 | 76 | 4 | 149 | 272 | 31 | 162 | 1.63e-18 | 87.0 |
Msa0174550 | AT1G77510.1 | 44.186 | 86 | 47 | 1 | 47 | 132 | 391 | 475 | 2.94e-15 | 77.4 |
Msa0174550 | AT3G54960.2 | 34.659 | 176 | 95 | 5 | 26 | 200 | 96 | 252 | 1.97e-18 | 87.0 |
Msa0174550 | AT3G54960.2 | 32.911 | 158 | 95 | 5 | 61 | 207 | 340 | 497 | 5.27e-15 | 76.6 |
Msa0174550 | AT3G54960.2 | 31.429 | 175 | 103 | 6 | 149 | 315 | 101 | 266 | 1.93e-14 | 74.7 |
Msa0174550 | AT1G07960.4 | 34.400 | 125 | 78 | 3 | 14 | 135 | 8 | 131 | 1.39e-17 | 79.3 |
Msa0174550 | AT1G07960.4 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.79e-16 | 75.1 |
Msa0174550 | AT1G07960.3 | 34.400 | 125 | 78 | 3 | 14 | 135 | 8 | 131 | 1.39e-17 | 79.3 |
Msa0174550 | AT1G07960.3 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.79e-16 | 75.1 |
Msa0174550 | AT1G07960.1 | 34.400 | 125 | 78 | 3 | 14 | 135 | 8 | 131 | 1.39e-17 | 79.3 |
Msa0174550 | AT1G07960.1 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.79e-16 | 75.1 |
Msa0174550 | AT1G07960.2 | 34.400 | 125 | 78 | 3 | 14 | 135 | 8 | 131 | 1.39e-17 | 79.3 |
Msa0174550 | AT1G07960.2 | 28.571 | 126 | 88 | 2 | 140 | 265 | 18 | 141 | 3.79e-16 | 75.1 |
Msa0174550 | AT1G35620.1 | 31.667 | 120 | 79 | 2 | 31 | 149 | 34 | 151 | 2.47e-15 | 77.4 |
Msa0174550 | AT1G35620.1 | 37.607 | 117 | 59 | 4 | 168 | 283 | 52 | 155 | 3.99e-14 | 73.6 |
Msa0174550 | AT4G27080.1 | 34.454 | 119 | 64 | 2 | 28 | 132 | 140 | 258 | 1.38e-13 | 72.0 |
Msa0174550 | AT4G27080.2 | 34.454 | 119 | 64 | 2 | 28 | 132 | 192 | 310 | 1.73e-13 | 72.0 |
Msa0174550 | AT2G01270.1 | 33.577 | 137 | 70 | 5 | 24 | 139 | 30 | 166 | 6.22e-13 | 70.1 |
Msa0174550 | AT1G43560.1 | 32.979 | 94 | 60 | 2 | 155 | 248 | 66 | 156 | 1.04e-12 | 66.2 |
Msa0174550 | AT1G76760.1 | 33.766 | 77 | 49 | 1 | 155 | 231 | 71 | 145 | 9.68e-12 | 63.5 |
Msa0174550 | AT3G20560.1 | 30.769 | 169 | 87 | 7 | 29 | 181 | 141 | 295 | 1.99e-11 | 65.5 |
Msa0174550 | AT1G52260.1 | 34.021 | 97 | 61 | 2 | 161 | 256 | 90 | 184 | 2.04e-11 | 65.5 |
Msa0174550 | AT1G15020.3 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 7.66e-11 | 63.9 |
Msa0174550 | AT1G15020.1 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 7.66e-11 | 63.9 |
Msa0174550 | AT1G15020.2 | 31.884 | 138 | 71 | 6 | 24 | 139 | 36 | 172 | 8.16e-11 | 63.9 |
Find 96 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATATTATAGAACAATTT+TGG | 0.055828 | 1_4:-60225766 | Msa0174550:three_prime_UTR |
CTGTTTCCTTCGTTGGTTTA+TGG | 0.147838 | 1_4:-60225667 | Msa0174550:three_prime_UTR |
ACAACTTCGTTGAAGGTTTC+AGG | 0.182439 | 1_4:+60227725 | None:intergenic |
CGATGTAGTGATTGCAAATT+TGG | 0.193790 | 1_4:-60227306 | Msa0174550:CDS |
AGTACTTCTTAGAAACTTTC+AGG | 0.203871 | 1_4:+60226311 | None:intergenic |
GGCTGGGGATGGTCTAATTT+AGG | 0.240134 | 1_4:-60225418 | Msa0174550:three_prime_UTR |
CACCGGCTTTGTTGCCCTTT+GGG | 0.256628 | 1_4:+60226914 | None:intergenic |
CTCAACTTCCTCTTCAATTC+GGG | 0.267301 | 1_4:+60226542 | None:intergenic |
CAGAAAGAAGAAGATGAAAA+TGG | 0.277955 | 1_4:-60230271 | Msa0174550:exon |
TATAATTAATCAACGAATAA+AGG | 0.281432 | 1_4:+60225534 | None:intergenic |
ATTTGGATGCCGACAAATAT+AGG | 0.282633 | 1_4:-60227289 | Msa0174550:CDS |
TCTACATATGCTTGACTTAA+CGG | 0.295936 | 1_4:-60225928 | Msa0174550:exon |
TCATCTTCTTCTTTCTGTTT+CGG | 0.296011 | 1_4:+60230277 | None:intergenic |
CTTGGCAATCAAAACAGATT+TGG | 0.298806 | 1_4:+60228943 | None:intergenic |
TCACCGGCTTTGTTGCCCTT+TGG | 0.302925 | 1_4:+60226913 | None:intergenic |
AAGAGTGTGTGCAGCAAATA+TGG | 0.310178 | 1_4:-60228403 | Msa0174550:CDS |
TCTCAACTTCCTCTTCAATT+CGG | 0.333016 | 1_4:+60226541 | None:intergenic |
AAACTCAACCAAGACATCTT+TGG | 0.333568 | 1_4:+60227691 | None:intergenic |
GACATTGACATCAAAATTGC+TGG | 0.343255 | 1_4:-60225842 | Msa0174550:three_prime_UTR |
TGCAGCAAATATGGCGTCTC+TGG | 0.357109 | 1_4:-60228394 | Msa0174550:CDS |
CCAAAATTGTTCTATAATAT+AGG | 0.359717 | 1_4:+60225766 | None:intergenic |
GTCAATTCGTCGGCCTTAGC+AGG | 0.363199 | 1_4:+60225970 | None:intergenic |
AACAAAGCCGGTGAAGATTA+TGG | 0.369872 | 1_4:-60226904 | Msa0174550:CDS |
TTGGGTTCTAGAGATCCTTT+TGG | 0.375047 | 1_4:+60228349 | None:intergenic |
GCAGTGGGACACTAGCTTCC+AGG | 0.391290 | 1_4:+60225886 | None:intergenic |
TTTGGATGCCGACAAATATA+GGG | 0.392085 | 1_4:-60227288 | Msa0174550:CDS |
AAGGAAGTTGGTCAAGATAA+AGG | 0.392677 | 1_4:-60230138 | Msa0174550:CDS |
TTAATACATGACAACTACTA+TGG | 0.401254 | 1_4:-60225620 | Msa0174550:three_prime_UTR |
AAGAGACTTGGATGACTTTG+TGG | 0.405410 | 1_4:-60226875 | Msa0174550:CDS |
AGCTCAAGGGTTCTGCTTCT+AGG | 0.408451 | 1_4:-60226518 | Msa0174550:intron |
GATCTCAGGTAAACTACAAC+GGG | 0.409396 | 1_4:+60225721 | None:intergenic |
AGTGGAAGACTTGGACGAAT+TGG | 0.413484 | 1_4:-60226613 | Msa0174550:CDS |
AGCCAGGTCCCTATATTTGT+CGG | 0.426037 | 1_4:+60227280 | None:intergenic |
ATCCAAGACAACTTCGTTGA+AGG | 0.433274 | 1_4:+60227718 | None:intergenic |
GAAAATTTCGAGAAGGAAGT+TGG | 0.442730 | 1_4:-60230150 | Msa0174550:CDS |
TTACAATCTGTTTCCTTCGT+TGG | 0.446112 | 1_4:-60225674 | Msa0174550:three_prime_UTR |
AACCTTCAACGAAGTTGTCT+TGG | 0.447834 | 1_4:-60227720 | Msa0174550:CDS |
GAAAATTCCTGTAGGTTTGA+AGG | 0.449227 | 1_4:-60228209 | Msa0174550:intron |
TCTAAGAAGTACTTGGAGAA+AGG | 0.455359 | 1_4:-60226301 | Msa0174550:CDS |
TTATGGAGGTGGAAGAGACT+TGG | 0.456654 | 1_4:-60226887 | Msa0174550:CDS |
GAAAGTTTCTAAGAAGTACT+TGG | 0.456740 | 1_4:-60226308 | Msa0174550:CDS |
TTCCCAAAGGGCAACAAAGC+CGG | 0.473546 | 1_4:-60226916 | Msa0174550:CDS |
GCAATTTCTACCATCGATCC+TGG | 0.474691 | 1_4:-60225904 | Msa0174550:three_prime_UTR |
ACGATAGTTAATGCATCATA+AGG | 0.475630 | 1_4:-60225581 | Msa0174550:three_prime_UTR |
AAATGGAGATGCATCAGATC+TGG | 0.477555 | 1_4:-60230254 | Msa0174550:CDS |
CCTAGAACGACTACTTGAAA+AGG | 0.487467 | 1_4:-60226248 | Msa0174550:intron |
TTCTGTATAGGCTGGTATAG+TGG | 0.489871 | 1_4:-60226631 | Msa0174550:intron |
TTTCTTGAGGGTCAATTCGT+CGG | 0.493083 | 1_4:+60225960 | None:intergenic |
TTGGAAACCACTGAATCGTT+GGG | 0.493402 | 1_4:+60228368 | None:intergenic |
TTTGGAAACCACTGAATCGT+TGG | 0.494227 | 1_4:+60228367 | None:intergenic |
GCCCTTTGGGAAGAACTTCA+AGG | 0.495998 | 1_4:+60226927 | None:intergenic |
ACCTTGAAGTTCTTCCCAAA+GGG | 0.499568 | 1_4:-60226928 | Msa0174550:CDS |
GCCGGTGAAGATTATGGAGG+TGG | 0.503383 | 1_4:-60226898 | Msa0174550:CDS |
TTATGCAGGTATGATGTAAG+TGG | 0.507495 | 1_4:-60226958 | Msa0174550:intron |
ACGATTCAGTGGTTTCCAAA+AGG | 0.517733 | 1_4:-60228364 | Msa0174550:CDS |
CTCTTCAATTCGGGCAAACA+CGG | 0.519231 | 1_4:+60226551 | None:intergenic |
TACCTTGAAGTTCTTCCCAA+AGG | 0.520489 | 1_4:-60226929 | Msa0174550:CDS |
TCCACCTCCATAATCTTCAC+CGG | 0.524594 | 1_4:+60226897 | None:intergenic |
ATAAACTTGTCGCATGAAGA+TGG | 0.526846 | 1_4:-60225643 | Msa0174550:three_prime_UTR |
GGATGAAACCAAAGATGTCT+TGG | 0.528319 | 1_4:-60227699 | Msa0174550:CDS |
GGCTGGTATAGTGGAAGACT+TGG | 0.534298 | 1_4:-60226622 | Msa0174550:CDS |
ACATTGACATCAAAATTGCT+GGG | 0.538476 | 1_4:-60225841 | Msa0174550:three_prime_UTR |
TCGTTGAGTTCTACGCCCCT+TGG | 0.544107 | 1_4:-60230110 | Msa0174550:intron |
TGCTGATGACAAAGAGAAGA+AGG | 0.546178 | 1_4:-60226574 | Msa0174550:CDS |
AAAATTCCTGTAGGTTTGAA+GGG | 0.547840 | 1_4:-60228208 | Msa0174550:intron |
GCAGTCTATCAGCCCTGCTA+AGG | 0.553095 | 1_4:-60225983 | Msa0174550:intron |
GGAACAAGTCGAGATGCAAA+AGG | 0.557736 | 1_4:-60226832 | Msa0174550:CDS |
CGTGTTTGCCCGAATTGAAG+AGG | 0.560187 | 1_4:-60226550 | Msa0174550:CDS |
AGACTTGGACGAATTGGTAA+AGG | 0.570577 | 1_4:-60226607 | Msa0174550:CDS |
TCAATTCGTCGGCCTTAGCA+GGG | 0.573157 | 1_4:+60225971 | None:intergenic |
CAACTACTATGGTTAATACA+AGG | 0.573319 | 1_4:-60225609 | Msa0174550:three_prime_UTR |
TACAGCTCCATCTCATGTAG+TGG | 0.576987 | 1_4:-60227756 | Msa0174550:CDS |
GCAGCAAATATGGCGTCTCT+GGG | 0.581952 | 1_4:-60228393 | Msa0174550:CDS |
TTCATCACAAGGAGCTGCAG+TGG | 0.584092 | 1_4:+60225870 | None:intergenic |
CTGGGTACCCAACGATTCAG+TGG | 0.589603 | 1_4:-60228375 | Msa0174550:CDS |
GCTGAGTTTGTAAACACAGA+AGG | 0.589800 | 1_4:-60228164 | Msa0174550:CDS |
AGAGGAAGTTGAGAAGCTCA+AGG | 0.591148 | 1_4:-60226532 | Msa0174550:CDS |
GTTAGCACCACTACATGAGA+TGG | 0.595533 | 1_4:+60227749 | None:intergenic |
GACTGAAGAAAATTTCGAGA+AGG | 0.599089 | 1_4:-60230157 | Msa0174550:CDS |
ATAATCAGCACGTGCTGTAG+CGG | 0.600017 | 1_4:-60230305 | Msa0174550:five_prime_UTR |
AAAAGGACAGCTTACTTCTG+AGG | 0.602957 | 1_4:-60226815 | Msa0174550:intron |
GAGGAAGTTGAGAAGCTCAA+GGG | 0.606083 | 1_4:-60226531 | Msa0174550:CDS |
TGCCGACAAATATAGGGACC+TGG | 0.607166 | 1_4:-60227282 | Msa0174550:CDS |
AGCTGTAGCAATCTTCACAT+TGG | 0.611470 | 1_4:+60227772 | None:intergenic |
ACACTAGCTTCCAGGATCGA+TGG | 0.613295 | 1_4:+60225894 | None:intergenic |
GCTCCGGAATATGAAAAGCT+CGG | 0.615790 | 1_4:-60228983 | Msa0174550:CDS |
TTTGGGAAGAACTTCAAGGT+AGG | 0.618623 | 1_4:+60226931 | None:intergenic |
GCAAGTGATTCTGCAGTGCG+TGG | 0.619080 | 1_4:+60228185 | None:intergenic |
ATCAGTTTCAGCAGACGACG+TGG | 0.623698 | 1_4:-60230187 | Msa0174550:CDS |
CGATCTCAGGTAAACTACAA+CGG | 0.625933 | 1_4:+60225720 | None:intergenic |
TCATCACAAGGAGCTGCAGT+GGG | 0.644752 | 1_4:+60225871 | None:intergenic |
TTTATACCATAAACCAACGA+AGG | 0.674319 | 1_4:+60225661 | None:intergenic |
GAGTTTGTAAACACAGAAGG+AGG | 0.682221 | 1_4:-60228161 | Msa0174550:intron |
AATGTCAAACATTCATCACA+AGG | 0.685008 | 1_4:+60225859 | None:intergenic |
AAAGCCGGTGAAGATTATGG+AGG | 0.748922 | 1_4:-60226901 | Msa0174550:CDS |
ATCTCAGGTAAACTACAACG+GGG | 0.830776 | 1_4:+60225722 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTAATATAAAAAAT+TGG | - | chr1_4:60229083-60229102 | Msa0174550:intron | 0.0% |
!! | TAATTATCAAAACTAAATTT+CGG | + | chr1_4:60225908-60225927 | None:intergenic | 10.0% |
!!! | TAGTTTTGATAATTAAATTA+AGG | - | chr1_4:60225913-60225932 | Msa0174550:three_prime_UTR | 10.0% |
!! | CAAAATTAATGATTAAAAAA+TGG | + | chr1_4:60228200-60228219 | None:intergenic | 10.0% |
!!! | TTTTTAATATAAAAAATTGG+CGG | - | chr1_4:60229086-60229105 | Msa0174550:intron | 10.0% |
!!! | TTATACTCTTTTAATAGATA+AGG | - | chr1_4:60226377-60226396 | Msa0174550:intron | 15.0% |
!!! | AATATCTTTTAATAGAATGA+AGG | - | chr1_4:60226483-60226502 | Msa0174550:intron | 15.0% |
!!! | ATATCTTTTAATAGAATGAA+GGG | - | chr1_4:60226484-60226503 | Msa0174550:intron | 15.0% |
!! | AGAACTTTAATTAATAATTC+AGG | - | chr1_4:60226554-60226573 | Msa0174550:CDS | 15.0% |
!!! | TTTTCTTAATCTATAACAAA+TGG | + | chr1_4:60227056-60227075 | None:intergenic | 15.0% |
!!! | TATTATTTTCTAAAAAGTCA+AGG | + | chr1_4:60227511-60227530 | None:intergenic | 15.0% |
!!! | CTATATTATAGAACAATTTT+GGG | - | chr1_4:60230057-60230076 | Msa0174550:intron | 15.0% |
!!! | TATATTATAGAACAATTTTG+GGG | - | chr1_4:60230058-60230077 | Msa0174550:intron | 15.0% |
!! | TATAATTAATCAACGAATAA+AGG | + | chr1_4:60230291-60230310 | None:intergenic | 15.0% |
!!! | ATATTCAGTATTTTAAAACT+TGG | - | chr1_4:60230383-60230402 | Msa0174550:five_prime_UTR | 15.0% |
!!! | TAGTTTTATCATCTGATTTA+CGG | - | chr1_4:60225792-60225811 | Msa0174550:three_prime_UTR | 20.0% |
!! | ATGAATTGTTGTAAATGATA+CGG | - | chr1_4:60225818-60225837 | Msa0174550:three_prime_UTR | 20.0% |
!! | TCTCTAATTATTTGATTGAA+GGG | + | chr1_4:60225991-60226010 | None:intergenic | 20.0% |
!! | TTCTCTAATTATTTGATTGA+AGG | + | chr1_4:60225992-60226011 | None:intergenic | 20.0% |
!! | TAAACTCTACTTATATAACA+TGG | + | chr1_4:60226086-60226105 | None:intergenic | 20.0% |
!! | TCTACATTACAAATTACAAA+GGG | + | chr1_4:60226633-60226652 | None:intergenic | 20.0% |
!! | TTCACTTTATCTGTAATAAT+AGG | - | chr1_4:60226795-60226814 | Msa0174550:intron | 20.0% |
!!! | ATTTCTCTGTATTTTTAGTA+AGG | - | chr1_4:60227084-60227103 | Msa0174550:intron | 20.0% |
!! | TATTAAATCATCAATGAGAA+CGG | + | chr1_4:60227336-60227355 | None:intergenic | 20.0% |
!!! | CTAACTTATTAATTTGCTAT+AGG | - | chr1_4:60227379-60227398 | Msa0174550:intron | 20.0% |
!!! | TTGATATGATTTTATATCTC+AGG | - | chr1_4:60227531-60227550 | Msa0174550:intron | 20.0% |
!! | GTTAATCTAATACTTGATTT+CGG | - | chr1_4:60227591-60227610 | Msa0174550:intron | 20.0% |
!!! | TTTTTGAAGTACTTTAATGT+AGG | - | chr1_4:60227832-60227851 | Msa0174550:intron | 20.0% |
!! | AATGGCAATATGATAATTAT+TGG | + | chr1_4:60228182-60228201 | None:intergenic | 20.0% |
!!! | TATTTTAATGCAAAACAAAG+AGG | + | chr1_4:60228230-60228249 | None:intergenic | 20.0% |
!! | CCAACTTTAAATTGATAAAA+AGG | + | chr1_4:60228401-60228420 | None:intergenic | 20.0% |
!!! | CCTTTTTATCAATTTAAAGT+TGG | - | chr1_4:60228398-60228417 | Msa0174550:CDS | 20.0% |
!!! | AACTTTTTCATAAATCTGAA+GGG | + | chr1_4:60228473-60228492 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTCCATTAGATA+CGG | - | chr1_4:60229479-60229498 | Msa0174550:intron | 20.0% |
!!! | ATTGCAAAAAAGTTATTTCA+AGG | + | chr1_4:60229695-60229714 | None:intergenic | 20.0% |
!! | TTTAATTATTTGGTCGTTAA+AGG | - | chr1_4:60229740-60229759 | Msa0174550:intron | 20.0% |
!!! | TTGTAAAAATTTGATAATCG+TGG | - | chr1_4:60229790-60229809 | Msa0174550:intron | 20.0% |
!! | CCAAAATTGTTCTATAATAT+AGG | + | chr1_4:60230059-60230078 | None:intergenic | 20.0% |
!!! | CCTATATTATAGAACAATTT+TGG | - | chr1_4:60230056-60230075 | Msa0174550:intron | 20.0% |
! | CATCAAATCAAAAGCTAAAA+CGG | + | chr1_4:60225846-60225865 | None:intergenic | 25.0% |
!! | AATTATTAACAATCTAGCTC+AGG | - | chr1_4:60225956-60225975 | Msa0174550:CDS | 25.0% |
! | TATTACAATGATAAGACAGT+AGG | - | chr1_4:60226029-60226048 | Msa0174550:intron | 25.0% |
!!! | ACATGGTTATTTTGTGTTTA+CGG | + | chr1_4:60226069-60226088 | None:intergenic | 25.0% |
! | ACGCATAAGTTTATTTACTA+TGG | + | chr1_4:60226317-60226336 | None:intergenic | 25.0% |
! | CTCTACATTACAAATTACAA+AGG | + | chr1_4:60226634-60226653 | None:intergenic | 25.0% |
! | TTTATCTGTAATAATAGGTG+TGG | - | chr1_4:60226800-60226819 | Msa0174550:intron | 25.0% |
! | TTTCAGTTTAATAATCTCCT+CGG | + | chr1_4:60227014-60227033 | None:intergenic | 25.0% |
!!! | CACACGTAATTTTAAAGTAA+AGG | - | chr1_4:60227223-60227242 | Msa0174550:intron | 25.0% |
!!! | ACGTAATTTTAAAGTAAAGG+CGG | - | chr1_4:60227226-60227245 | Msa0174550:intron | 25.0% |
! | GTTAAGAATATAAATTTCCC+AGG | + | chr1_4:60227268-60227287 | None:intergenic | 25.0% |
!!! | ACTTATTAATTTGCTATAGG+TGG | - | chr1_4:60227382-60227401 | Msa0174550:intron | 25.0% |
! | AAAAAATAGATGTGAAATGC+AGG | + | chr1_4:60227571-60227590 | None:intergenic | 25.0% |
!!! | AGTAACAGATGGTTTTAAAA+CGG | + | chr1_4:60227696-60227715 | None:intergenic | 25.0% |
! | ATAGATATTACAGTAACAGA+TGG | + | chr1_4:60227707-60227726 | None:intergenic | 25.0% |
!! | AAAAAAGTATATGATGCTAC+AGG | + | chr1_4:60227816-60227835 | None:intergenic | 25.0% |
!!! | GATTTTTTTAGTTTCTGTGA+TGG | - | chr1_4:60227913-60227932 | Msa0174550:intron | 25.0% |
! | TTGCAATTGTACTATTGTAA+TGG | - | chr1_4:60227995-60228014 | Msa0174550:intron | 25.0% |
! | ATTGTAAATTAGTAATGTCC+TGG | - | chr1_4:60228249-60228268 | Msa0174550:intron | 25.0% |
!!! | TGAACTTTTGTTATTTTGCA+AGG | - | chr1_4:60228325-60228344 | Msa0174550:intron | 25.0% |
! | TGAAAGAGTTATGTTTAACT+TGG | - | chr1_4:60228434-60228453 | Msa0174550:intron | 25.0% |
!!! | ACTTTTTCATAAATCTGAAG+GGG | + | chr1_4:60228472-60228491 | None:intergenic | 25.0% |
!!! | CAACTTTTTCATAAATCTGA+AGG | + | chr1_4:60228474-60228493 | None:intergenic | 25.0% |
!!! | AACCAACTCTTTTTAAGATT+AGG | + | chr1_4:60228587-60228606 | None:intergenic | 25.0% |
! | ATCATTTCAGAATATTGTCA+TGG | - | chr1_4:60229339-60229358 | Msa0174550:intron | 25.0% |
!!! | TTTTTTTCTCCATTAGATAC+GGG | - | chr1_4:60229480-60229499 | Msa0174550:intron | 25.0% |
! | GTTAAACTTGAATTTCTCTT+TGG | - | chr1_4:60229667-60229686 | Msa0174550:intron | 25.0% |
!! | AGACAATATGTTTTTCTTGA+GGG | + | chr1_4:60229877-60229896 | None:intergenic | 25.0% |
!! | TAGACAATATGTTTTTCTTG+AGG | + | chr1_4:60229878-60229897 | None:intergenic | 25.0% |
! | TTAATACATGACAACTACTA+TGG | - | chr1_4:60230202-60230221 | Msa0174550:CDS | 25.0% |
TCATCTTCTTCTTTCTGTTT+CGG | + | chr1_4:60225548-60225567 | None:intergenic | 30.0% | |
CAGAAAGAAGAAGATGAAAA+TGG | - | chr1_4:60225551-60225570 | Msa0174550:three_prime_UTR | 30.0% | |
AAGATCGAGAAAATTACCAA+GGG | + | chr1_4:60225731-60225750 | None:intergenic | 30.0% | |
! | TTTTCATTCACTAAGTGATG+TGG | + | chr1_4:60226171-60226190 | None:intergenic | 30.0% |
! | TTAGGTAATTTGTCAACACA+TGG | - | chr1_4:60226213-60226232 | Msa0174550:intron | 30.0% |
! | CTGGTTTGCATAAAATAAAC+TGG | - | chr1_4:60226288-60226307 | Msa0174550:CDS | 30.0% |
! | TCATCTCGACTATTTGATTT+AGG | - | chr1_4:60226431-60226450 | Msa0174550:intron | 30.0% |
!! | CCTTAATGGATATAGTGTTT+TGG | + | chr1_4:60226518-60226537 | None:intergenic | 30.0% |
CCAAAACACTATATCCATTA+AGG | - | chr1_4:60226515-60226534 | Msa0174550:intron | 30.0% | |
!!! | ATCCATTAAGGTTTTTGAGT+AGG | - | chr1_4:60226527-60226546 | Msa0174550:CDS | 30.0% |
TTCCTACTCAAAAACCTTAA+TGG | + | chr1_4:60226532-60226551 | None:intergenic | 30.0% | |
CAGATAAAATTTACTGAGCT+TGG | + | chr1_4:60226929-60226948 | None:intergenic | 30.0% | |
TGAAACTTTGACATTTACCA+GGG | - | chr1_4:60227029-60227048 | Msa0174550:intron | 30.0% | |
!!! | TAATTTTAAAGTAAAGGCGG+AGG | - | chr1_4:60227229-60227248 | Msa0174550:intron | 30.0% |
AGAATATAAATTTCCCAGGA+TGG | + | chr1_4:60227264-60227283 | None:intergenic | 30.0% | |
AAAATTCCTGTAGGTTTGAA+GGG | - | chr1_4:60227614-60227633 | Msa0174550:intron | 30.0% | |
! | GAAGTACTTTAATGTAGGAT+TGG | - | chr1_4:60227837-60227856 | Msa0174550:intron | 30.0% |
! | ATCTAAAACTCTAGTATCTC+AGG | + | chr1_4:60227867-60227886 | None:intergenic | 30.0% |
AAATACACAGAAGAGAGAAA+GGG | + | chr1_4:60227972-60227991 | None:intergenic | 30.0% | |
AAAATACACAGAAGAGAGAA+AGG | + | chr1_4:60227973-60227992 | None:intergenic | 30.0% | |
!! | TAATGGATTTCCTAAACAGA+GGG | - | chr1_4:60228012-60228031 | Msa0174550:intron | 30.0% |
TTTCACAAACATTCCATGAT+TGG | + | chr1_4:60228281-60228300 | None:intergenic | 30.0% | |
!!! | TTTTGTTATTTTGCAAGGTG+TGG | - | chr1_4:60228330-60228349 | Msa0174550:intron | 30.0% |
! | AGTTGCTGCAGTTTTTAAAT+CGG | - | chr1_4:60228489-60228508 | Msa0174550:intron | 30.0% |
TGCCTAATCTTAAAAAGAGT+TGG | - | chr1_4:60228582-60228601 | Msa0174550:intron | 30.0% | |
TAAAAAGTGAAGTCCAATAG+AGG | - | chr1_4:60228629-60228648 | Msa0174550:intron | 30.0% | |
GTAGCAAGAAGAAATAATGT+AGG | - | chr1_4:60228690-60228709 | Msa0174550:intron | 30.0% | |
AATGTAGGTACCAAAACAAA+TGG | - | chr1_4:60228705-60228724 | Msa0174550:intron | 30.0% | |
ATGTAGGTACCAAAACAAAT+GGG | - | chr1_4:60228706-60228725 | Msa0174550:intron | 30.0% | |
! | AGCATTTTTCCCATTTGTTT+TGG | + | chr1_4:60228718-60228737 | None:intergenic | 30.0% |
! | TTCTGCAATAACTTTTATGC+AGG | - | chr1_4:60228850-60228869 | Msa0174550:intron | 30.0% |
! | GCTTTTATCAATGAGAAATC+TGG | - | chr1_4:60228969-60228988 | Msa0174550:CDS | 30.0% |
CAAATTAAACAGTTCTCAAG+GGG | + | chr1_4:60229384-60229403 | None:intergenic | 30.0% | |
GCAAATTAAACAGTTCTCAA+GGG | + | chr1_4:60229385-60229404 | None:intergenic | 30.0% | |
TGCAAATTAAACAGTTCTCA+AGG | + | chr1_4:60229386-60229405 | None:intergenic | 30.0% | |
ATTTGCATGCGTATACTTTA+TGG | - | chr1_4:60229399-60229418 | Msa0174550:intron | 30.0% | |
! | TTGCTTTAAGCAACATAACA+GGG | + | chr1_4:60229432-60229451 | None:intergenic | 30.0% |
! | TTTGCTTTAAGCAACATAAC+AGG | + | chr1_4:60229433-60229452 | None:intergenic | 30.0% |
AGTACTTCTTAGAAACTTTC+AGG | + | chr1_4:60229514-60229533 | None:intergenic | 30.0% | |
!! | GAAAGTTTCTAAGAAGTACT+TGG | - | chr1_4:60229514-60229533 | Msa0174550:intron | 30.0% |
! | GAGAAATTCAAGTTTAACCA+TGG | + | chr1_4:60229665-60229684 | None:intergenic | 30.0% |
AAGGAGATTAAGAATTGAAG+TGG | - | chr1_4:60229759-60229778 | Msa0174550:intron | 30.0% | |
AATGTCAAACATTCATCACA+AGG | + | chr1_4:60229966-60229985 | None:intergenic | 30.0% | |
ACATTGACATCAAAATTGCT+GGG | - | chr1_4:60229981-60230000 | Msa0174550:intron | 30.0% | |
!!! | ATAGAACAATTTTGGGGTAA+TGG | - | chr1_4:60230064-60230083 | Msa0174550:intron | 30.0% |
TTTATACCATAAACCAACGA+AGG | + | chr1_4:60230164-60230183 | None:intergenic | 30.0% | |
CAACTACTATGGTTAATACA+AGG | - | chr1_4:60230213-60230232 | Msa0174550:CDS | 30.0% | |
ACGATAGTTAATGCATCATA+AGG | - | chr1_4:60230241-60230260 | Msa0174550:CDS | 30.0% | |
AACTCAAAAATGAACTCAGA+AGG | - | chr1_4:60230338-60230357 | Msa0174550:five_prime_UTR | 30.0% | |
!!! | TCAGTATTTTAAAACTTGGC+TGG | - | chr1_4:60230387-60230406 | Msa0174550:five_prime_UTR | 30.0% |
!!! | CAGTATTTTAAAACTTGGCT+GGG | - | chr1_4:60230388-60230407 | Msa0174550:five_prime_UTR | 30.0% |
!!! | AGTATTTTAAAACTTGGCTG+GGG | - | chr1_4:60230389-60230408 | Msa0174550:five_prime_UTR | 30.0% |
GACTGAAGAAAATTTCGAGA+AGG | - | chr1_4:60225665-60225684 | Msa0174550:three_prime_UTR | 35.0% | |
GAAAATTTCGAGAAGGAAGT+TGG | - | chr1_4:60225672-60225691 | Msa0174550:three_prime_UTR | 35.0% | |
! | AAGGAAGTTGGTCAAGATAA+AGG | - | chr1_4:60225684-60225703 | Msa0174550:three_prime_UTR | 35.0% |
AGATCGAGAAAATTACCAAG+GGG | + | chr1_4:60225730-60225749 | None:intergenic | 35.0% | |
GAAGATCGAGAAAATTACCA+AGG | + | chr1_4:60225732-60225751 | None:intergenic | 35.0% | |
!! | TTTTTCTGATTCGCTTCGAT+CGG | - | chr1_4:60225755-60225774 | Msa0174550:three_prime_UTR | 35.0% |
AAAAACACATGCCTTGTCAT+AGG | - | chr1_4:60226187-60226206 | Msa0174550:intron | 35.0% | |
TTACCTAATGACCTATGACA+AGG | + | chr1_4:60226201-60226220 | None:intergenic | 35.0% | |
!! | GATTCTCTTGGGTTGAATAT+AGG | - | chr1_4:60226345-60226364 | Msa0174550:intron | 35.0% |
AGTAAGTGTTATCTCTAGCT+TGG | - | chr1_4:60226689-60226708 | Msa0174550:intron | 35.0% | |
! | TTACCGAGCTTTTCATATTC+CGG | + | chr1_4:60226845-60226864 | None:intergenic | 35.0% |
CTTGGCAATCAAAACAGATT+TGG | + | chr1_4:60226882-60226901 | None:intergenic | 35.0% | |
!!! | CAAATCTGTTTTGATTGCCA+AGG | - | chr1_4:60226880-60226899 | Msa0174550:CDS | 35.0% |
! | AATTTACTGAGCTTGGTAAC+AGG | + | chr1_4:60226922-60226941 | None:intergenic | 35.0% |
CTGAAACTTTGACATTTACC+AGG | - | chr1_4:60227028-60227047 | Msa0174550:intron | 35.0% | |
AATCTATAACAAATGGACCC+TGG | + | chr1_4:60227049-60227068 | None:intergenic | 35.0% | |
ATCAAGTTCAAGCACAAAGA+AGG | + | chr1_4:60227301-60227320 | None:intergenic | 35.0% | |
!!! | TCAAGGTCTTCTCACTTTTT+GGG | + | chr1_4:60227494-60227513 | None:intergenic | 35.0% |
TGATTTCGGAAAATTCCTGT+AGG | - | chr1_4:60227605-60227624 | Msa0174550:intron | 35.0% | |
GAAAATTCCTGTAGGTTTGA+AGG | - | chr1_4:60227613-60227632 | Msa0174550:intron | 35.0% | |
ACATGTTTGTGTAACTTCCA+AGG | - | chr1_4:60227750-60227769 | Msa0174550:CDS | 35.0% | |
GTCTTTGTGATATTTCCGAA+GGG | + | chr1_4:60227789-60227808 | None:intergenic | 35.0% | |
AGTATATGATGCTACAGGAT+GGG | + | chr1_4:60227811-60227830 | None:intergenic | 35.0% | |
AAGTATATGATGCTACAGGA+TGG | + | chr1_4:60227812-60227831 | None:intergenic | 35.0% | |
!! | TGCGCAGATTTTGATGATTT+AGG | + | chr1_4:60227890-60227909 | None:intergenic | 35.0% |
TGTTGAGCATAACTTTAGCA+TGG | - | chr1_4:60227936-60227955 | Msa0174550:intron | 35.0% | |
AATACACAGAAGAGAGAAAG+GGG | + | chr1_4:60227971-60227990 | None:intergenic | 35.0% | |
!! | GTAATGGATTTCCTAAACAG+AGG | - | chr1_4:60228011-60228030 | Msa0174550:intron | 35.0% |
AAACTCAACCAAGACATCTT+TGG | + | chr1_4:60228134-60228153 | None:intergenic | 35.0% | |
CTGCAATGATATCAACTTAC+AGG | + | chr1_4:60228375-60228394 | None:intergenic | 35.0% | |
CGATGTAGTGATTGCAAATT+TGG | - | chr1_4:60228516-60228535 | Msa0174550:intron | 35.0% | |
ATTTGGATGCCGACAAATAT+AGG | - | chr1_4:60228533-60228552 | Msa0174550:intron | 35.0% | |
TTTGGATGCCGACAAATATA+GGG | - | chr1_4:60228534-60228553 | Msa0174550:intron | 35.0% | |
!! | CTAAAACTTACTTTTCAGCC+AGG | + | chr1_4:60228561-60228580 | None:intergenic | 35.0% |
CAATAGAGGTCAGATTGTTT+GGG | - | chr1_4:60228643-60228662 | Msa0174550:intron | 35.0% | |
AATAGAGGTCAGATTGTTTG+GGG | - | chr1_4:60228644-60228663 | Msa0174550:intron | 35.0% | |
TTATGCAGGTATGATGTAAG+TGG | - | chr1_4:60228864-60228883 | Msa0174550:intron | 35.0% | |
ATATAAAAAATTGGCGGCAG+TGG | - | chr1_4:60229092-60229111 | Msa0174550:intron | 35.0% | |
! | CGCACTTGATATTTCTGTAT+AGG | - | chr1_4:60229179-60229198 | Msa0174550:intron | 35.0% |
! | CTTGATATTTCTGTATAGGC+TGG | - | chr1_4:60229183-60229202 | Msa0174550:intron | 35.0% |
TCTCAACTTCCTCTTCAATT+CGG | + | chr1_4:60229284-60229303 | None:intergenic | 35.0% | |
GTAAATCTTCCCGTATCTAA+TGG | + | chr1_4:60229492-60229511 | None:intergenic | 35.0% | |
!! | TCTAAGAAGTACTTGGAGAA+AGG | - | chr1_4:60229521-60229540 | Msa0174550:intron | 35.0% |
TGCATCAAGTGAAACTTTCA+AGG | + | chr1_4:60229628-60229647 | None:intergenic | 35.0% | |
GCATGAAATGATAAGTTCCA+TGG | - | chr1_4:60229645-60229664 | Msa0174550:intron | 35.0% | |
GACATTGACATCAAAATTGC+TGG | - | chr1_4:60229980-60229999 | Msa0174550:intron | 35.0% | |
TTACAATCTGTTTCCTTCGT+TGG | - | chr1_4:60230148-60230167 | Msa0174550:CDS | 35.0% | |
ATAAACTTGTCGCATGAAGA+TGG | - | chr1_4:60230179-60230198 | Msa0174550:CDS | 35.0% | |
! | CTTTTCTACGTTTAGTCACG+TGG | + | chr1_4:60225449-60225468 | None:intergenic | 40.0% |
AAATGGAGATGCATCAGATC+TGG | - | chr1_4:60225568-60225587 | Msa0174550:three_prime_UTR | 40.0% | |
ATGCCTTGTCATAGGTCATT+AGG | - | chr1_4:60226195-60226214 | Msa0174550:intron | 40.0% | |
ATAAATACGACCATGTGCTC+TGG | - | chr1_4:60226269-60226288 | Msa0174550:CDS | 40.0% | |
TTTATGCAAACCAGAGCACA+TGG | + | chr1_4:60226282-60226301 | None:intergenic | 40.0% | |
CGTCTCAATGTGATTCTCTT+GGG | - | chr1_4:60226334-60226353 | Msa0174550:intron | 40.0% | |
GTTCTTATTGCGAAGCATGT+TGG | - | chr1_4:60226967-60226986 | Msa0174550:intron | 40.0% | |
! | AAGAGTGTGTGCAGCAAATA+TGG | - | chr1_4:60227419-60227438 | Msa0174550:intron | 40.0% |
TTGGAAACCACTGAATCGTT+GGG | + | chr1_4:60227457-60227476 | None:intergenic | 40.0% | |
TTTGGAAACCACTGAATCGT+TGG | + | chr1_4:60227458-60227477 | None:intergenic | 40.0% | |
ACGATTCAGTGGTTTCCAAA+AGG | - | chr1_4:60227458-60227477 | Msa0174550:intron | 40.0% | |
!!! | TTGGGTTCTAGAGATCCTTT+TGG | + | chr1_4:60227476-60227495 | None:intergenic | 40.0% |
!! | GTCAAGGTCTTCTCACTTTT+TGG | + | chr1_4:60227495-60227514 | None:intergenic | 40.0% |
GCTGAGTTTGTAAACACAGA+AGG | - | chr1_4:60227658-60227677 | Msa0174550:intron | 40.0% | |
GAGTTTGTAAACACAGAAGG+AGG | - | chr1_4:60227661-60227680 | Msa0174550:intron | 40.0% | |
TTTGTGATATTTCCGAAGGG+TGG | + | chr1_4:60227786-60227805 | None:intergenic | 40.0% | |
GGTCTTTGTGATATTTCCGA+AGG | + | chr1_4:60227790-60227809 | None:intergenic | 40.0% | |
GTAAGTCAAACCCTCTGTTT+AGG | + | chr1_4:60228025-60228044 | None:intergenic | 40.0% | |
! | AAACAGAGGGTTTGACTTAC+AGG | - | chr1_4:60228025-60228044 | Msa0174550:intron | 40.0% |
AGCTGTAGCAATCTTCACAT+TGG | + | chr1_4:60228053-60228072 | None:intergenic | 40.0% | |
ACAACTTCGTTGAAGGTTTC+AGG | + | chr1_4:60228100-60228119 | None:intergenic | 40.0% | |
AACCTTCAACGAAGTTGTCT+TGG | - | chr1_4:60228102-60228121 | Msa0174550:intron | 40.0% | |
ATCCAAGACAACTTCGTTGA+AGG | + | chr1_4:60228107-60228126 | None:intergenic | 40.0% | |
GGATGAAACCAAAGATGTCT+TGG | - | chr1_4:60228123-60228142 | Msa0174550:intron | 40.0% | |
!! | TGGTTGAGTTTTATGCACCA+TGG | - | chr1_4:60228143-60228162 | Msa0174550:intron | 40.0% |
TTCCATGATTGGATGAAACC+AGG | + | chr1_4:60228270-60228289 | None:intergenic | 40.0% | |
! | TGCTGCAGTTTTTAAATCGG+AGG | - | chr1_4:60228492-60228511 | Msa0174550:intron | 40.0% |
CCAAACAATCTGACCTCTAT+TGG | + | chr1_4:60228645-60228664 | None:intergenic | 40.0% | |
CCAATAGAGGTCAGATTGTT+TGG | - | chr1_4:60228642-60228661 | Msa0174550:intron | 40.0% | |
ATCATGCAGTTTGGTCTAGT+AGG | + | chr1_4:60228670-60228689 | None:intergenic | 40.0% | |
TCTTGCTACATCATGCAGTT+TGG | + | chr1_4:60228679-60228698 | None:intergenic | 40.0% | |
TTTGGGAAGAACTTCAAGGT+AGG | + | chr1_4:60228894-60228913 | None:intergenic | 40.0% | |
TACCTTGAAGTTCTTCCCAA+AGG | - | chr1_4:60228893-60228912 | Msa0174550:intron | 40.0% | |
ACCTTGAAGTTCTTCCCAAA+GGG | - | chr1_4:60228894-60228913 | Msa0174550:intron | 40.0% | |
AACAAAGCCGGTGAAGATTA+TGG | - | chr1_4:60228918-60228937 | Msa0174550:intron | 40.0% | |
AAGAGACTTGGATGACTTTG+TGG | - | chr1_4:60228947-60228966 | Msa0174550:CDS | 40.0% | |
AAAAGGACAGCTTACTTCTG+AGG | - | chr1_4:60229007-60229026 | Msa0174550:CDS | 40.0% | |
TTCTGTATAGGCTGGTATAG+TGG | - | chr1_4:60229191-60229210 | Msa0174550:intron | 40.0% | |
AGACTTGGACGAATTGGTAA+AGG | - | chr1_4:60229215-60229234 | Msa0174550:intron | 40.0% | |
TGCTGATGACAAAGAGAAGA+AGG | - | chr1_4:60229248-60229267 | Msa0174550:intron | 40.0% | |
CTCAACTTCCTCTTCAATTC+GGG | + | chr1_4:60229283-60229302 | None:intergenic | 40.0% | |
!!! | CCTTTTCAAGTAGTCGTTCT+AGG | + | chr1_4:60229577-60229596 | None:intergenic | 40.0% |
CCTAGAACGACTACTTGAAA+AGG | - | chr1_4:60229574-60229593 | Msa0174550:intron | 40.0% | |
TTTCTTGAGGGTCAATTCGT+CGG | + | chr1_4:60229865-60229884 | None:intergenic | 40.0% | |
ATCTCAGGTAAACTACAACG+GGG | + | chr1_4:60230103-60230122 | None:intergenic | 40.0% | |
GATCTCAGGTAAACTACAAC+GGG | + | chr1_4:60230104-60230123 | None:intergenic | 40.0% | |
CGATCTCAGGTAAACTACAA+CGG | + | chr1_4:60230105-60230124 | None:intergenic | 40.0% | |
CCTTCTCAAAAATCGATCTC+AGG | + | chr1_4:60230118-60230137 | None:intergenic | 40.0% | |
!! | CCTGAGATCGATTTTTGAGA+AGG | - | chr1_4:60230115-60230134 | Msa0174550:CDS | 40.0% |
!! | CTGTTTCCTTCGTTGGTTTA+TGG | - | chr1_4:60230155-60230174 | Msa0174550:CDS | 40.0% |
!!! | TTTTAAAACTTGGCTGGGGA+TGG | - | chr1_4:60230393-60230412 | Msa0174550:five_prime_UTR | 40.0% |
ATAATCAGCACGTGCTGTAG+CGG | - | chr1_4:60225517-60225536 | Msa0174550:three_prime_UTR | 45.0% | |
GCGTCTCAATGTGATTCTCT+TGG | - | chr1_4:60226333-60226352 | Msa0174550:intron | 45.0% | |
! | ACACTGCAAAAAGCTTGCTC+CGG | - | chr1_4:60226823-60226842 | Msa0174550:CDS | 45.0% |
GCTCCGGAATATGAAAAGCT+CGG | - | chr1_4:60226839-60226858 | Msa0174550:CDS | 45.0% | |
! | TTGGTAACAGGAAAACCAGG+GGG | + | chr1_4:60226910-60226929 | None:intergenic | 45.0% |
! | CTTGGTAACAGGAAAACCAG+GGG | + | chr1_4:60226911-60226930 | None:intergenic | 45.0% |
! | GCTTGGTAACAGGAAAACCA+GGG | + | chr1_4:60226912-60226931 | None:intergenic | 45.0% |
! | AGCTTGGTAACAGGAAAACC+AGG | + | chr1_4:60226913-60226932 | None:intergenic | 45.0% |
ATTGCGAAGCATGTTGGTGT+TGG | - | chr1_4:60226973-60226992 | Msa0174550:intron | 45.0% | |
! | AATCTCCTCGGTTTGTAGAC+AGG | + | chr1_4:60227002-60227021 | None:intergenic | 45.0% |
ACACACACACAGAATGCAGA+AGG | + | chr1_4:60227132-60227151 | None:intergenic | 45.0% | |
TACAGCTCCATCTCATGTAG+TGG | - | chr1_4:60228066-60228085 | Msa0174550:intron | 45.0% | |
GTTAGCACCACTACATGAGA+TGG | + | chr1_4:60228076-60228095 | None:intergenic | 45.0% | |
TTGGTGAGTAGTGAGTACCA+TGG | + | chr1_4:60228163-60228182 | None:intergenic | 45.0% | |
GTCCTGGTTTCATCCAATCA+TGG | - | chr1_4:60228265-60228284 | Msa0174550:intron | 45.0% | |
AGCCAGGTCCCTATATTTGT+CGG | + | chr1_4:60228545-60228564 | None:intergenic | 45.0% | |
AGCTGCAGTTAGTGAAGACT+TGG | - | chr1_4:60228791-60228810 | Msa0174550:intron | 45.0% | |
TGCAGTTAGTGAAGACTTGG+AGG | - | chr1_4:60228794-60228813 | Msa0174550:intron | 45.0% | |
AGTTAGTGAAGACTTGGAGG+TGG | - | chr1_4:60228797-60228816 | Msa0174550:intron | 45.0% | |
AAAGCCGGTGAAGATTATGG+AGG | - | chr1_4:60228921-60228940 | Msa0174550:intron | 45.0% | |
TCCACCTCCATAATCTTCAC+CGG | + | chr1_4:60228928-60228947 | None:intergenic | 45.0% | |
TTATGGAGGTGGAAGAGACT+TGG | - | chr1_4:60228935-60228954 | Msa0174550:intron | 45.0% | |
GGAACAAGTCGAGATGCAAA+AGG | - | chr1_4:60228990-60229009 | Msa0174550:CDS | 45.0% | |
AGTGGAAGACTTGGACGAAT+TGG | - | chr1_4:60229209-60229228 | Msa0174550:intron | 45.0% | |
CTCTTCAATTCGGGCAAACA+CGG | + | chr1_4:60229274-60229293 | None:intergenic | 45.0% | |
AGAGGAAGTTGAGAAGCTCA+AGG | - | chr1_4:60229290-60229309 | Msa0174550:intron | 45.0% | |
GAGGAAGTTGAGAAGCTCAA+GGG | - | chr1_4:60229291-60229310 | Msa0174550:intron | 45.0% | |
GCAATTTCTACCATCGATCC+TGG | - | chr1_4:60229918-60229937 | Msa0174550:intron | 45.0% | |
! | TTGCTGGGAGATTTTCAACG+TGG | - | chr1_4:60229996-60230015 | Msa0174550:intron | 45.0% |
!!! | TTTTACAAATTTTAATTATT+TGG | - | chr1_4:60229730-60229749 | Msa0174550:intron | 5.0% |
ATCAGTTTCAGCAGACGACG+TGG | - | chr1_4:60225635-60225654 | Msa0174550:three_prime_UTR | 50.0% | |
GGATACCTGTCTACAAACCG+AGG | - | chr1_4:60226994-60227013 | Msa0174550:intron | 50.0% | |
AAGTAAAGGCGGAGGAGAGT+TGG | - | chr1_4:60227237-60227256 | Msa0174550:intron | 50.0% | |
TGCAGCAAATATGGCGTCTC+TGG | - | chr1_4:60227428-60227447 | Msa0174550:intron | 50.0% | |
GCAGCAAATATGGCGTCTCT+GGG | - | chr1_4:60227429-60227448 | Msa0174550:intron | 50.0% | |
AGGGTGGCACTATGTTTCCT+TGG | + | chr1_4:60227770-60227789 | None:intergenic | 50.0% | |
GGAAACATAGTGCCACCCTT+CGG | - | chr1_4:60227771-60227790 | Msa0174550:CDS | 50.0% | |
TGCCGACAAATATAGGGACC+TGG | - | chr1_4:60228540-60228559 | Msa0174550:intron | 50.0% | |
! | GCCCTTTGGGAAGAACTTCA+AGG | + | chr1_4:60228898-60228917 | None:intergenic | 50.0% |
TTCCCAAAGGGCAACAAAGC+CGG | - | chr1_4:60228906-60228925 | Msa0174550:intron | 50.0% | |
AAAATTGGCGGCAGTGGACA+TGG | - | chr1_4:60229098-60229117 | Msa0174550:intron | 50.0% | |
! | GGCTGGTATAGTGGAAGACT+TGG | - | chr1_4:60229200-60229219 | Msa0174550:intron | 50.0% |
CGTGTTTGCCCGAATTGAAG+AGG | - | chr1_4:60229272-60229291 | Msa0174550:intron | 50.0% | |
AGCTCAAGGGTTCTGCTTCT+AGG | - | chr1_4:60229304-60229323 | Msa0174550:intron | 50.0% | |
TCAATTCGTCGGCCTTAGCA+GGG | + | chr1_4:60229854-60229873 | None:intergenic | 50.0% | |
! | ACACTAGCTTCCAGGATCGA+TGG | + | chr1_4:60229931-60229950 | None:intergenic | 50.0% |
TCATCACAAGGAGCTGCAGT+GGG | + | chr1_4:60229954-60229973 | None:intergenic | 50.0% | |
TTCATCACAAGGAGCTGCAG+TGG | + | chr1_4:60229955-60229974 | None:intergenic | 50.0% | |
GGCTGGGGATGGTCTAATTT+AGG | - | chr1_4:60230404-60230423 | Msa0174550:five_prime_UTR | 50.0% | |
TCGTTGAGTTCTACGCCCCT+TGG | - | chr1_4:60225712-60225731 | Msa0174550:three_prime_UTR | 55.0% | |
GAGGAGAGTTGGACCATCCT+GGG | - | chr1_4:60227248-60227267 | Msa0174550:intron | 55.0% | |
CTGGGTACCCAACGATTCAG+TGG | - | chr1_4:60227447-60227466 | Msa0174550:intron | 55.0% | |
GCAAGTGATTCTGCAGTGCG+TGG | + | chr1_4:60227640-60227659 | None:intergenic | 55.0% | |
!! | CACCGGCTTTGTTGCCCTTT+GGG | + | chr1_4:60228911-60228930 | None:intergenic | 55.0% |
!! | TCACCGGCTTTGTTGCCCTT+TGG | + | chr1_4:60228912-60228931 | None:intergenic | 55.0% |
GCCGGTGAAGATTATGGAGG+TGG | - | chr1_4:60228924-60228943 | Msa0174550:intron | 55.0% | |
GCAGTGGACATGGTGGCTTT+GGG | - | chr1_4:60229108-60229127 | Msa0174550:intron | 55.0% | |
! | CAGTGGACATGGTGGCTTTG+GGG | - | chr1_4:60229109-60229128 | Msa0174550:intron | 55.0% |
GCAGTCTATCAGCCCTGCTA+AGG | - | chr1_4:60229839-60229858 | Msa0174550:intron | 55.0% | |
GTCAATTCGTCGGCCTTAGC+AGG | + | chr1_4:60229855-60229874 | None:intergenic | 55.0% | |
GAAAACCAGGGGGCTGACCT+TGG | + | chr1_4:60226900-60226919 | None:intergenic | 60.0% | |
GGAGGAGAGTTGGACCATCC+TGG | - | chr1_4:60227247-60227266 | Msa0174550:intron | 60.0% | |
GCGTGGCCCTTCAAACCTAC+AGG | + | chr1_4:60227623-60227642 | None:intergenic | 60.0% | |
ATTGGCGGCAGTGGACATGG+TGG | - | chr1_4:60229101-60229120 | Msa0174550:intron | 60.0% | |
GGCAGTGGACATGGTGGCTT+TGG | - | chr1_4:60229107-60229126 | Msa0174550:intron | 60.0% | |
!! | TGGACATGGTGGCTTTGGGG+TGG | - | chr1_4:60229112-60229131 | Msa0174550:intron | 60.0% |
!! | GGACATGGTGGCTTTGGGGT+GGG | - | chr1_4:60229113-60229132 | Msa0174550:intron | 60.0% |
!! | GGTGGCTTTGGGGTGGGATA+AGG | - | chr1_4:60229119-60229138 | Msa0174550:intron | 60.0% |
! | GCAGTGGGACACTAGCTTCC+AGG | + | chr1_4:60229939-60229958 | None:intergenic | 60.0% |
GATTGCCAAGGTCAGCCCCC+TGG | - | chr1_4:60226892-60226911 | Msa0174550:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 60225411 | 60230433 | 60225411 | ID=Msa0174550;Name=Msa0174550 |
chr1_4 | mRNA | 60225411 | 60230433 | 60225411 | ID=Msa0174550-mRNA-1;Parent=Msa0174550;Name=Msa0174550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|1|1|11|525|364 |
chr1_4 | exon | 60225411 | 60226001 | 60225411 | ID=Msa0174550-mRNA-1:exon:19054;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60226249 | 60226348 | 60226249 | ID=Msa0174550-mRNA-1:exon:19053;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60226519 | 60226643 | 60226519 | ID=Msa0174550-mRNA-1:exon:19052;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60226816 | 60226972 | 60226816 | ID=Msa0174550-mRNA-1:exon:19051;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60227275 | 60227366 | 60227275 | ID=Msa0174550-mRNA-1:exon:19050;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60227470 | 60227497 | 60227470 | ID=Msa0174550-mRNA-1:exon:19049;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60227680 | 60227797 | 60227680 | ID=Msa0174550-mRNA-1:exon:19048;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60228162 | 60228217 | 60228162 | ID=Msa0174550-mRNA-1:exon:19047;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60228346 | 60228443 | 60228346 | ID=Msa0174550-mRNA-1:exon:19046;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60228943 | 60229027 | 60228943 | ID=Msa0174550-mRNA-1:exon:19045;Parent=Msa0174550-mRNA-1 |
chr1_4 | exon | 60230111 | 60230433 | 60230111 | ID=Msa0174550-mRNA-1:exon:19044;Parent=Msa0174550-mRNA-1 |
chr1_4 | five_prime_UTR | 60230281 | 60230433 | 60230281 | ID=Msa0174550-mRNA-1:five_prime_utr;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60230111 | 60230280 | 60230111 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60228943 | 60229027 | 60228943 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60228346 | 60228443 | 60228346 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60228162 | 60228217 | 60228162 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60227680 | 60227797 | 60227680 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60227470 | 60227497 | 60227470 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60227275 | 60227366 | 60227275 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60226816 | 60226972 | 60226816 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60226519 | 60226643 | 60226519 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60226249 | 60226348 | 60226249 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | CDS | 60225936 | 60226001 | 60225936 | ID=Msa0174550-mRNA-1:cds;Parent=Msa0174550-mRNA-1 |
chr1_4 | three_prime_UTR | 60225411 | 60225935 | 60225411 | ID=Msa0174550-mRNA-1:three_prime_utr;Parent=Msa0174550-mRNA-1 |
Gene Sequence |
Protein sequence |