AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031230 MtrunA17_Chr1g0189151 97.475 396 9 1 1 396 1 395 0.0 794
Msa0031230 MtrunA17_Chr3g0127861 54.258 411 154 6 19 395 14 424 7.98e-162 461
Msa0031230 MtrunA17_Chr5g0395041 42.518 421 202 7 9 391 17 435 2.86e-111 333
Msa0031230 MtrunA17_Chr4g0000091 30.104 289 183 7 92 369 71 351 1.36e-34 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031230 AT1G64720.1 61.140 386 131 4 13 396 17 385 4.20e-172 486
Msa0031230 AT5G54170.1 57.595 316 128 4 84 395 120 433 4.96e-127 374
Msa0031230 AT4G14500.1 44.626 428 194 9 1 391 11 432 1.58e-117 349
Msa0031230 AT3G23080.1 44.390 410 197 9 9 391 13 418 2.41e-107 322
Msa0031230 AT3G23080.2 45.524 391 182 9 28 391 1 387 9.65e-104 312
Msa0031230 AT3G23080.3 45.524 391 182 9 28 391 1 387 9.65e-104 312
Msa0031230 AT4G14500.2 39.405 269 123 7 1 231 11 277 9.68e-56 185
Msa0031230 AT3G13062.1 31.111 315 201 8 91 395 82 390 6.72e-40 147
Msa0031230 AT3G13062.2 31.111 315 201 8 91 395 82 390 1.30e-39 147
Msa0031230 AT3G13062.3 30.031 323 202 8 91 395 82 398 1.22e-37 140
Msa0031230 AT1G55960.1 31.596 307 189 9 78 369 68 368 1.79e-36 137
Msa0031230 AT1G55960.2 29.316 307 171 11 78 369 68 343 4.97e-24 102

Find 149 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCATAGGTCGTCGAATT+TGG 0.185811 1_1:-57931336 Msa0031230:CDS
AGTTGGTTAGGGATTTCTTT+TGG 0.205035 1_1:-57931592 Msa0031230:CDS
GTGACCAAGGCGGTTGTATT+TGG 0.231338 1_1:-57929700 Msa0031230:CDS
TTCAGCCTAATAACTATTCT+TGG 0.234177 1_1:-57933138 Msa0031230:CDS
GTTCTTTCACTATGAAGATA+TGG 0.258130 1_1:-57930037 Msa0031230:CDS
TTCCTCTGTTTCCATTTCAT+TGG 0.259256 1_1:-57933379 Msa0031230:five_prime_UTR
TGTTGTTGTTATGGATATCT+TGG 0.278643 1_1:-57933248 Msa0031230:CDS
GAATTCCTCTGTTGTTGTTA+TGG 0.284147 1_1:-57933257 Msa0031230:CDS
TTCAGTCTCCAACAAGTTAC+TGG 0.286635 1_1:+57929825 None:intergenic
TAATATAGATCTACTCGTTT+AGG 0.288020 1_1:+57930517 None:intergenic
GTACTCCAAGAATAGTTATT+AGG 0.298005 1_1:+57933133 None:intergenic
CTCTATTGCCACAACTTACT+TGG 0.298101 1_1:+57929584 None:intergenic
GAGAAGAAAGATGGTTAAAT+AGG 0.298779 1_1:+57933409 None:intergenic
ACGTTCCTCAATTTCCTATT+GGG 0.307440 1_1:-57933485 Msa0031230:five_prime_UTR
AACGTTCCTCAATTTCCTAT+TGG 0.312903 1_1:-57933486 Msa0031230:five_prime_UTR
CTTGCCTGCACCCTTGATCA+AGG 0.320705 1_1:-57929727 Msa0031230:CDS
TGTATTCACTCTTATCCTTT+CGG 0.327106 1_1:-57933319 Msa0031230:five_prime_UTR
CGCTAAGCTTGGAGTTCGTC+AGG 0.333843 1_1:-57929998 Msa0031230:CDS
GCTTCAAAACCAACCTGGTT+TGG 0.345626 1_1:-57933068 Msa0031230:CDS
CATGTCACGTGCAGTTCTTC+TGG 0.349830 1_1:-57932868 Msa0031230:intron
CTTGTTGGAGACTGAAAATC+AGG 0.353763 1_1:-57929818 Msa0031230:CDS
ATGCGAGTCCTGAGTTGGTT+AGG 0.358805 1_1:-57931604 Msa0031230:CDS
CTTTGGATTGCTGTTATCTT+CGG 0.360253 1_1:-57933199 Msa0031230:CDS
ATTAGGCTGAATAGCCCATT+TGG 0.362784 1_1:+57933150 None:intergenic
TATCATAGGTCGTCGAATTT+GGG 0.370573 1_1:-57931335 Msa0031230:CDS
TTCTTTCACTATGAAGATAT+GGG 0.383405 1_1:-57930036 Msa0031230:CDS
CATGAATAATATCAATAATC+AGG 0.390673 1_1:-57929416 Msa0031230:three_prime_UTR
CAGCCATGGTTCTAGAGAAA+TGG 0.390877 1_1:-57929541 Msa0031230:three_prime_UTR
GCCCGACGGTTTGGAAAATT+CGG 0.400471 1_1:-57929673 Msa0031230:CDS
TGTTGGAAGTGTGGAAGAAT+TGG 0.406300 1_1:+57933354 None:intergenic
TTTGGAATAGCCCGACGGTT+TGG 0.406644 1_1:-57929682 Msa0031230:CDS
GTGTTGTTGTTGGTTGGGCT+TGG 0.406854 1_1:-57933177 Msa0031230:CDS
GTTGTTGTTATGGATATCTT+GGG 0.414047 1_1:-57933247 Msa0031230:CDS
TATAAGAAAGAAAGGGATTC+CGG 0.417822 1_1:-57929931 Msa0031230:CDS
CGTTTAGGTTTGCTCTGCCT+TGG 0.417964 1_1:+57930532 None:intergenic
CTTCGGTGTTGTTGTTGGTT+GGG 0.423403 1_1:-57933182 Msa0031230:CDS
TTCTCTATCACTGCAAAAGA+AGG 0.424377 1_1:+57931360 None:intergenic
AGGTTTGCTCTGCCTTGGTA+TGG 0.426290 1_1:+57930537 None:intergenic
TCTTCGGTGTTGTTGTTGGT+TGG 0.430475 1_1:-57933183 Msa0031230:CDS
ATACCTAAGCTTCTAGTTGT+TGG 0.433725 1_1:-57929763 Msa0031230:CDS
AAGAATTGGAACCAATGAAA+TGG 0.436501 1_1:+57933368 None:intergenic
GCTGTAATTGAATACCCAAT+AGG 0.438568 1_1:+57933471 None:intergenic
ATACACAGCGCGATTGTTGT+TGG 0.439505 1_1:+57933337 None:intergenic
TTTGCAAAATTTGTGTAAGT+TGG 0.443993 1_1:-57932800 Msa0031230:CDS
CAAGCTTGGTAAGTCATGTT+TGG 0.447227 1_1:+57932724 None:intergenic
GTTGGGCTTGGAAACCCAAA+TGG 0.449819 1_1:-57933165 Msa0031230:CDS
TTAGGCTGAATAGCCCATTT+GGG 0.450902 1_1:+57933151 None:intergenic
TGGTCACTAGCCCTTGATCA+AGG 0.452319 1_1:+57929716 None:intergenic
TTGGAGTTCGTCAGGGTATG+TGG 0.453950 1_1:-57929990 Msa0031230:CDS
GTTATCTTCGGTGTTGTTGT+TGG 0.454908 1_1:-57933187 Msa0031230:CDS
CACGTAATCAGCAGTTACTT+TGG 0.455464 1_1:+57929867 None:intergenic
TCTTCAAGTTTCGAATTCCT+TGG 0.455904 1_1:-57933105 Msa0031230:CDS
TGCTGATTACGTGAGATCTC+TGG 0.460180 1_1:-57929857 Msa0031230:CDS
TACGTACGTATAAGAAAGAA+AGG 0.462465 1_1:-57929939 Msa0031230:CDS
TTCTGGTGGTGAAAGTGAAA+AGG 0.469810 1_1:-57932851 Msa0031230:CDS
TGCGAGTCCTGAGTTGGTTA+GGG 0.472434 1_1:-57931603 Msa0031230:CDS
CTAAGCTTCTAGTTGTTGGC+GGG 0.478011 1_1:-57929759 Msa0031230:CDS
CTTGATCAAGGGTGCAGGCA+AGG 0.479777 1_1:+57929728 None:intergenic
AAAAGAATTGAGAAGAAAGA+TGG 0.481943 1_1:+57933400 None:intergenic
TTGTATCAAATTGGCAGCCA+TGG 0.482398 1_1:-57929555 Msa0031230:three_prime_UTR
CCTAAGCTTCTAGTTGTTGG+CGG 0.482710 1_1:-57929760 Msa0031230:CDS
TCTGGTGGTGAAAGTGAAAA+GGG 0.485541 1_1:-57932850 Msa0031230:CDS
TTACATTCATAGCTCCACTT+TGG 0.487272 1_1:-57933216 Msa0031230:CDS
TTCTTATACGTACGTAGTCC+AGG 0.487357 1_1:+57929946 None:intergenic
ATTGTTCTGCTGTTGTTCCT+CGG 0.491620 1_1:+57933291 None:intergenic
ATGAAGATATGGGCATACCT+TGG 0.492383 1_1:-57930026 Msa0031230:CDS
TGAAGATATGGGCATACCTT+GGG 0.500114 1_1:-57930025 Msa0031230:CDS
TCCAGGATCAAACTTCTTGA+CGG 0.500862 1_1:+57929963 None:intergenic
GCCGTCAAGAAGTTTGATCC+TGG 0.503459 1_1:-57929964 Msa0031230:CDS
GTTTCTTGTCGAGGAAATAC+CGG 0.506043 1_1:-57929610 Msa0031230:three_prime_UTR
AACTTATTACTGTGTGACTA+AGG 0.513252 1_1:-57931302 Msa0031230:intron
CTTCTGATGACAAACCGATC+GGG 0.515089 1_1:-57929792 Msa0031230:CDS
CCGCCAACAACTAGAAGCTT+AGG 0.515981 1_1:+57929760 None:intergenic
ACCAGCTTGGATTCAGATGA+TGG 0.516098 1_1:-57932758 Msa0031230:CDS
TTTGCTCTGCCTTGGTATGG+AGG 0.518246 1_1:+57930540 None:intergenic
TTGCCTGCACCCTTGATCAA+GGG 0.518780 1_1:-57929726 Msa0031230:CDS
CCTTGGGAAATCGCTAAGCT+TGG 0.519071 1_1:-57930009 Msa0031230:CDS
AGAAAGATGGTGGACCAGCT+TGG 0.522059 1_1:-57932771 Msa0031230:CDS
TGGAGTTCGTCAGGGTATGT+GGG 0.522164 1_1:-57929989 Msa0031230:CDS
ATTCAAGAGTGTGAGGTCAC+TGG 0.523985 1_1:-57931518 Msa0031230:CDS
TTGATCAAGGGTGCAGGCAA+GGG 0.525896 1_1:+57929729 None:intergenic
TAGGAAATTGAGGAACGTTA+CGG 0.527940 1_1:+57933490 None:intergenic
CTTGGTCCCTACGCCAAGCT+TGG 0.528324 1_1:+57932710 None:intergenic
AAGGGTGCAGGCAAGGGCAA+TGG 0.537523 1_1:+57929735 None:intergenic
TTAGGTATGCTTCTCCCGAT+CGG 0.542706 1_1:+57929778 None:intergenic
CAAACATGACTTACCAAGCT+TGG 0.544826 1_1:-57932723 Msa0031230:CDS
GCCACAACTTACTTGGCCGC+CGG 0.547432 1_1:+57929591 None:intergenic
GAATACCCAATAGGAAATTG+AGG 0.548329 1_1:+57933480 None:intergenic
GGTCACTAGCCCTTGATCAA+GGG 0.548340 1_1:+57929717 None:intergenic
AGACTCGACCAGTAACTTGT+TGG 0.549322 1_1:-57929833 Msa0031230:CDS
AGTGATAGAGAATATATCAT+AGG 0.553664 1_1:-57931349 Msa0031230:CDS
GGGATGATGAGTTTCGGTCG+AGG 0.555696 1_1:-57931571 Msa0031230:CDS
CGCGATTGTTGTTGGAAGTG+TGG 0.555812 1_1:+57933345 None:intergenic
TAGCCCTTGATCAAGGGTGC+AGG 0.555894 1_1:+57929723 None:intergenic
TTGGGCTTGGAAACCCAAAT+GGG 0.556004 1_1:-57933164 Msa0031230:CDS
GTTTGGAATACTCCGCAACC+AGG 0.561804 1_1:-57933051 Msa0031230:intron
GTGAAAGTGAAAAGGGATTG+AGG 0.563385 1_1:-57932843 Msa0031230:CDS
TGATGAGTTTCGGTCGAGGT+GGG 0.565414 1_1:-57931567 Msa0031230:CDS
GACTTACCAAGCTTGGCGTA+GGG 0.568038 1_1:-57932716 Msa0031230:CDS
GACGGTTTGGAAAATTCGGA+AGG 0.568472 1_1:-57929669 Msa0031230:CDS
AAGAAATCCCTAACCAACTC+AGG 0.569522 1_1:+57931596 None:intergenic
TGACTTACCAAGCTTGGCGT+AGG 0.571589 1_1:-57932717 Msa0031230:CDS
ACACTTCACATGAAGTCAGC+TGG 0.574800 1_1:+57930061 None:intergenic
CGGAGTATTCCAAACCAGGT+TGG 0.575515 1_1:+57933059 None:intergenic
AAACCATTTCTCTAGAACCA+TGG 0.576467 1_1:+57929538 None:intergenic
ATGATGAGTTTCGGTCGAGG+TGG 0.576909 1_1:-57931568 Msa0031230:CDS
TCCATCATCTGAATCCAAGC+TGG 0.578196 1_1:+57932757 None:intergenic
TATTCCAAATACAACCGCCT+TGG 0.579315 1_1:+57929696 None:intergenic
TCTCTATCACTGCAAAAGAA+GGG 0.579682 1_1:+57931361 None:intergenic
GATGGTGCAGTGGGTACGCA+AGG 0.588700 1_1:-57931489 Msa0031230:intron
TAAGCTTCTAGTTGTTGGCG+GGG 0.595982 1_1:-57929758 Msa0031230:CDS
TCTTCTGATGACAAACCGAT+CGG 0.596047 1_1:-57929793 Msa0031230:CDS
GGTTTGGAAAATTCGGAAGG+AGG 0.596932 1_1:-57929666 Msa0031230:CDS
GTTGCGGAGTATTCCAAACC+AGG 0.600622 1_1:+57933055 None:intergenic
AAGATAACAGCAATCCAAAG+TGG 0.602074 1_1:+57933202 None:intergenic
GTTCTGCTGTTGTTCCTCGG+TGG 0.613358 1_1:+57933294 None:intergenic
TGAAGATGCGAGTCCTGAGT+TGG 0.613594 1_1:-57931609 Msa0031230:CDS
TCAGAGCTTCAAAACCAACC+TGG 0.614875 1_1:-57933073 Msa0031230:CDS
CCAAGCTTAGCGATTTCCCA+AGG 0.615945 1_1:+57930009 None:intergenic
ACCGGCGGCCAAGTAAGTTG+TGG 0.616325 1_1:-57929592 Msa0031230:three_prime_UTR
TGTTCCTCGGTGGAACCGAA+AGG 0.618015 1_1:+57933304 None:intergenic
ACGTACGTATAAGAAAGAAA+GGG 0.623052 1_1:-57929938 Msa0031230:CDS
AACCAATGAAATGGAAACAG+AGG 0.627544 1_1:+57933377 None:intergenic
TGAGGTCACTGGAACAATGA+TGG 0.628803 1_1:-57931507 Msa0031230:CDS
CTGGAACAATGATGGTGCAG+TGG 0.630095 1_1:-57931499 Msa0031230:CDS
TTATTAGCACATGCTGACAA+TGG 0.637025 1_1:+57929904 None:intergenic
TGATCAAGGGCTAGTGACCA+AGG 0.638516 1_1:-57929713 Msa0031230:CDS
GGGATTGAGGAGTATAGTGA+CGG 0.640769 1_1:-57932830 Msa0031230:CDS
GTCACGTGCAGTTCTTCTGG+TGG 0.640922 1_1:-57932865 Msa0031230:intron
ACCGTTCTACTGCGATACTG+TGG 0.641157 1_1:+57931635 None:intergenic
TTCAACTATTCAAGAGTGTG+AGG 0.641287 1_1:-57931525 Msa0031230:CDS
ACCACAGTATCGCAGTAGAA+CGG 0.641569 1_1:-57931636 Msa0031230:CDS
GTTCTACTGCGATACTGTGG+TGG 0.646637 1_1:+57931638 None:intergenic
TTGGTTGAAGAGAAAGATGG+TGG 0.647060 1_1:-57932781 Msa0031230:CDS
GGAGTTCGTCAGGGTATGTG+GGG 0.647398 1_1:-57929988 Msa0031230:CDS
AGCTTGGCGTAGGGACCAAG+AGG 0.653449 1_1:-57932707 Msa0031230:intron
TACCTTGTTCCTCCATACCA+AGG 0.661937 1_1:-57930549 Msa0031230:CDS
AGCTCTGAATCATTAAACCA+AGG 0.662274 1_1:+57933088 None:intergenic
ACATGCTGACAATGGAACGC+CGG 0.666475 1_1:+57929912 None:intergenic
GATATCCATAACAACAACAG+AGG 0.669186 1_1:+57933252 None:intergenic
GCTAAGCTTGGAGTTCGTCA+GGG 0.670012 1_1:-57929997 Msa0031230:CDS
TGGAACAATGATGGTGCAGT+GGG 0.675173 1_1:-57931498 Msa0031230:CDS
TTGTATTTGGAATAGCCCGA+CGG 0.676217 1_1:-57929687 Msa0031230:CDS
GTGGAGCTATGAATGTAACA+AGG 0.685832 1_1:+57933221 None:intergenic
TCTTGTCGAGGAAATACCGG+CGG 0.694884 1_1:-57929607 Msa0031230:three_prime_UTR
AAGTTGGTTGAAGAGAAAGA+TGG 0.710264 1_1:-57932784 Msa0031230:CDS
TGCCTTGGTATGGAGGAACA+AGG 0.712864 1_1:+57930547 None:intergenic
TTATCCTTTCGGTTCCACCG+AGG 0.742180 1_1:-57933308 Msa0031230:five_prime_UTR
TCAAGGGCTAGTGACCAAGG+CGG 0.799326 1_1:-57929710 Msa0031230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACTATAATTTTTTTTTTTT+TGG + chr1_1:57930241-57930260 None:intergenic 10.0%
!! AAAAAAAAAAAATTATAGTC+TGG - chr1_1:57930241-57930260 Msa0031230:intron 10.0%
!! TTGTAAAATAGAATTTAAAT+AGG + chr1_1:57930578-57930597 None:intergenic 10.0%
!! ATTAAAAAACAAATTTATCA+TGG - chr1_1:57932422-57932441 Msa0031230:intron 10.0%
!! CTTATTAATTTAATTAATTG+CGG - chr1_1:57932571-57932590 Msa0031230:intron 10.0%
!! GTTTAAATTATTGAAAATGT+TGG - chr1_1:57930639-57930658 Msa0031230:intron 15.0%
!!! AAACATTTTACTATTTTAGT+AGG - chr1_1:57930722-57930741 Msa0031230:intron 15.0%
!! CAATAAATCATTAATTTAGT+TGG + chr1_1:57931021-57931040 None:intergenic 15.0%
!! AAATAGTCAATAACAATTTA+TGG - chr1_1:57931597-57931616 Msa0031230:CDS 15.0%
!! AAAACACATTCAACTATAAA+CGG + chr1_1:57929823-57929842 None:intergenic 20.0%
!! TCAATATTTGGCATATTTAA+AGG + chr1_1:57930606-57930625 None:intergenic 20.0%
!!! AATATGCCAAATATTGATTT+AGG - chr1_1:57930609-57930628 Msa0031230:intron 20.0%
!! TACTATCCTAAATCAATATT+TGG + chr1_1:57930618-57930637 None:intergenic 20.0%
!! ACTAATATAGATCAAAATAG+GGG + chr1_1:57930893-57930912 None:intergenic 20.0%
!! GACTAATATAGATCAAAATA+GGG + chr1_1:57930894-57930913 None:intergenic 20.0%
!! AATATTATGGATCAATTGAT+TGG + chr1_1:57930925-57930944 None:intergenic 20.0%
!! AATTGATCCATAATATTGTT+AGG - chr1_1:57930928-57930947 Msa0031230:intron 20.0%
!! AATGTAACTAAAAACTAATC+TGG - chr1_1:57931499-57931518 Msa0031230:CDS 20.0%
!!! AGTGTTTCTATAATTTATGT+TGG - chr1_1:57931563-57931582 Msa0031230:CDS 20.0%
!!! GTGTTTCTATAATTTATGTT+GGG - chr1_1:57931564-57931583 Msa0031230:CDS 20.0%
!!! GTCTTATATATTGATTTCTT+TGG - chr1_1:57931751-57931770 Msa0031230:intron 20.0%
!!! TATAACAATGTTGATGAAAA+AGG + chr1_1:57931882-57931901 None:intergenic 20.0%
!! TTTCATCAACATTGTTATAA+CGG - chr1_1:57931883-57931902 Msa0031230:intron 20.0%
!! GAAAGTTTACAAAAAAACAT+AGG + chr1_1:57931983-57932002 None:intergenic 20.0%
!! ACTTTCATGTATATTTGTAT+CGG - chr1_1:57931997-57932016 Msa0031230:intron 20.0%
!!! GTTTTTTAAATTAGTGATGT+CGG - chr1_1:57932034-57932053 Msa0031230:intron 20.0%
!!! AATTTTCTCAATCTTTTTAG+AGG - chr1_1:57932089-57932108 Msa0031230:intron 20.0%
!!! TAGTTTTTAATATCAACTTG+TGG - chr1_1:57932128-57932147 Msa0031230:intron 20.0%
!! TAAGAATTTAATGATTCCTT+TGG + chr1_1:57932555-57932574 None:intergenic 20.0%
!!! GAGTTTATTTTGTATCAAAT+TGG - chr1_1:57933159-57933178 Msa0031230:CDS 20.0%
!! CATGAATAATATCAATAATC+AGG - chr1_1:57933307-57933326 Msa0031230:five_prime_UTR 20.0%
! ATGAGTCAGAAAAAAGATAT+GGG + chr1_1:57929289-57929308 None:intergenic 25.0%
! AAAAGAATTGAGAAGAAAGA+TGG + chr1_1:57929326-57929345 None:intergenic 25.0%
!! ACATGTGATTATTGTTTCTT+GGG - chr1_1:57929774-57929793 Msa0031230:CDS 25.0%
! TTTGCAAAATTTGTGTAAGT+TGG - chr1_1:57929923-57929942 Msa0031230:CDS 25.0%
! AAATTTGATCATGTCAATCT+AGG - chr1_1:57930172-57930191 Msa0031230:intron 25.0%
! AATTTGATCATGTCAATCTA+GGG - chr1_1:57930173-57930192 Msa0031230:intron 25.0%
! TATTTATCCTAAGTTGTTCT+CGG + chr1_1:57930215-57930234 None:intergenic 25.0%
!!! ATTGGATTAGATTTTGTATG+TGG + chr1_1:57930683-57930702 None:intergenic 25.0%
!!! ATTTTACTATTTTAGTAGGC+AGG - chr1_1:57930726-57930745 Msa0031230:intron 25.0%
! GGACTAATATAGATCAAAAT+AGG + chr1_1:57930895-57930914 None:intergenic 25.0%
! ATTAGTGCCTAACAATATTA+TGG + chr1_1:57930938-57930957 None:intergenic 25.0%
!! AATCGAGAATGTTCAAATTT+TGG - chr1_1:57930960-57930979 Msa0031230:intron 25.0%
!!! GTTACTTTTGTTTGTTAGAA+TGG - chr1_1:57931061-57931080 Msa0031230:intron 25.0%
! AGTGATAGAGAATATATCAT+AGG - chr1_1:57931374-57931393 Msa0031230:intron 25.0%
!! TTAGATGTCTTTTCAGATAT+TGG - chr1_1:57931637-57931656 Msa0031230:CDS 25.0%
! AACAAAAGAAGCTGATATTT+AGG + chr1_1:57931715-57931734 None:intergenic 25.0%
! AAATATTGTGATATTGTCCA+TGG - chr1_1:57931837-57931856 Msa0031230:intron 25.0%
!!! ATGTATATTTGTATCGGTTT+CGG - chr1_1:57932003-57932022 Msa0031230:intron 25.0%
! TAATATAGATCTACTCGTTT+AGG + chr1_1:57932209-57932228 None:intergenic 25.0%
!!! CAATTTGTTTTTCTCAATCT+TGG - chr1_1:57932392-57932411 Msa0031230:intron 25.0%
! AAACAAATTTATCATGGAAC+TGG - chr1_1:57932428-57932447 Msa0031230:intron 25.0%
! CATCATTAATACAAATCACA+AGG + chr1_1:57932503-57932522 None:intergenic 25.0%
!! TCATCTTTTCTTGATTTAAC+TGG + chr1_1:57932642-57932661 None:intergenic 25.0%
! TTCTTTCACTATGAAGATAT+GGG - chr1_1:57932687-57932706 Msa0031230:intron 25.0%
!! GATAGTTTTCAAAGATTCAT+TGG - chr1_1:57933420-57933439 Msa0031230:five_prime_UTR 25.0%
GATGAGTCAGAAAAAAGATA+TGG + chr1_1:57929290-57929309 None:intergenic 30.0%
GAGAAGAAAGATGGTTAAAT+AGG + chr1_1:57929317-57929336 None:intergenic 30.0%
AAGAATTGGAACCAATGAAA+TGG + chr1_1:57929358-57929377 None:intergenic 30.0%
TGTATTCACTCTTATCCTTT+CGG - chr1_1:57929404-57929423 Msa0031230:three_prime_UTR 30.0%
! TGTTGTTGTTATGGATATCT+TGG - chr1_1:57929475-57929494 Msa0031230:three_prime_UTR 30.0%
! GTTGTTGTTATGGATATCTT+GGG - chr1_1:57929476-57929495 Msa0031230:three_prime_UTR 30.0%
TTCAGCCTAATAACTATTCT+TGG - chr1_1:57929585-57929604 Msa0031230:three_prime_UTR 30.0%
GTACTCCAAGAATAGTTATT+AGG + chr1_1:57929593-57929612 None:intergenic 30.0%
AAAGAGATTAAAAACGAACC+TGG + chr1_1:57929693-57929712 None:intergenic 30.0%
TTCTAATCAAATGCGTGTTT+GGG - chr1_1:57929724-57929743 Msa0031230:CDS 30.0%
AGAAACAATAATCACATGTG+TGG + chr1_1:57929773-57929792 None:intergenic 30.0%
! CACATGTGATTATTGTTTCT+TGG - chr1_1:57929773-57929792 Msa0031230:CDS 30.0%
! CATGTGATTATTGTTTCTTG+GGG - chr1_1:57929775-57929794 Msa0031230:CDS 30.0%
! ATGTGATTATTGTTTCTTGG+GGG - chr1_1:57929776-57929795 Msa0031230:CDS 30.0%
!! ATTTTAGTGCTTCACCAATT+AGG - chr1_1:57930087-57930106 Msa0031230:intron 30.0%
TACAATTTCCACTACCTAAT+TGG + chr1_1:57930104-57930123 None:intergenic 30.0%
AATTATAGTCTGGTATGACT+TGG - chr1_1:57930251-57930270 Msa0031230:intron 30.0%
ATATTCTCCAAAGACATGTT+AGG + chr1_1:57930550-57930569 None:intergenic 30.0%
!!! GTAGGCTTAAAAAGCTTTTT+TGG - chr1_1:57930753-57930772 Msa0031230:intron 30.0%
GATCAATTGATTGGTACAAA+AGG + chr1_1:57930916-57930935 None:intergenic 30.0%
TCACTTCATAGTCATATCTA+AGG + chr1_1:57931295-57931314 None:intergenic 30.0%
AACTTATTACTGTGTGACTA+AGG - chr1_1:57931421-57931440 Msa0031230:intron 30.0%
!! TTTTAGTTACATTGTCTTCC+AGG + chr1_1:57931492-57931511 None:intergenic 30.0%
! AAAACTAATCTGGAGAGTTT+TGG - chr1_1:57931509-57931528 Msa0031230:CDS 30.0%
AAAAGAAGCTGATATTTAGG+AGG + chr1_1:57931712-57931731 None:intergenic 30.0%
ACTCTATGAAATCAAAAGGA+CGG + chr1_1:57931799-57931818 None:intergenic 30.0%
AGAGACTCTATGAAATCAAA+AGG + chr1_1:57931803-57931822 None:intergenic 30.0%
! ATCAACATTGTTATAACGGA+AGG - chr1_1:57931887-57931906 Msa0031230:intron 30.0%
AGTTCAAGAAAACATTGTAC+AGG + chr1_1:57932372-57932391 None:intergenic 30.0%
! TTTTTCTCAATCTTGGTCAT+TGG - chr1_1:57932399-57932418 Msa0031230:intron 30.0%
! TAGCATGGTAGATTTTTGAT+AGG - chr1_1:57932455-57932474 Msa0031230:intron 30.0%
! ATTGCTATACCTTGTGATTT+TGG - chr1_1:57932525-57932544 Msa0031230:intron 30.0%
GTTCTTTCACTATGAAGATA+TGG - chr1_1:57932686-57932705 Msa0031230:intron 30.0%
TACGTACGTATAAGAAAGAA+AGG - chr1_1:57932784-57932803 Msa0031230:CDS 30.0%
ACGTACGTATAAGAAAGAAA+GGG - chr1_1:57932785-57932804 Msa0031230:CDS 30.0%
TATAAGAAAGAAAGGGATTC+CGG - chr1_1:57932792-57932811 Msa0031230:CDS 30.0%
!! TTTCTTTTTGTTTCTTGTCG+AGG - chr1_1:57933104-57933123 Msa0031230:CDS 30.0%
!!! CAGCTTTTTAAGTGGAAATA+TGG - chr1_1:57933242-57933261 Msa0031230:CDS 30.0%
AACGTTCCTCAATTTCCTAT+TGG - chr1_1:57929237-57929256 Msa0031230:three_prime_UTR 35.0%
ACGTTCCTCAATTTCCTATT+GGG - chr1_1:57929238-57929257 Msa0031230:three_prime_UTR 35.0%
GAATACCCAATAGGAAATTG+AGG + chr1_1:57929246-57929265 None:intergenic 35.0%
GCTGTAATTGAATACCCAAT+AGG + chr1_1:57929255-57929274 None:intergenic 35.0%
TTCCTCTGTTTCCATTTCAT+TGG - chr1_1:57929344-57929363 Msa0031230:three_prime_UTR 35.0%
AACCAATGAAATGGAAACAG+AGG + chr1_1:57929349-57929368 None:intergenic 35.0%
! GAATTCCTCTGTTGTTGTTA+TGG - chr1_1:57929466-57929485 Msa0031230:three_prime_UTR 35.0%
GATATCCATAACAACAACAG+AGG + chr1_1:57929474-57929493 None:intergenic 35.0%
TTACATTCATAGCTCCACTT+TGG - chr1_1:57929507-57929526 Msa0031230:three_prime_UTR 35.0%
AAGATAACAGCAATCCAAAG+TGG + chr1_1:57929524-57929543 None:intergenic 35.0%
! CTTTGGATTGCTGTTATCTT+CGG - chr1_1:57929524-57929543 Msa0031230:three_prime_UTR 35.0%
! TCTTCAAGTTTCGAATTCCT+TGG - chr1_1:57929618-57929637 Msa0031230:three_prime_UTR 35.0%
!! AGCTCTGAATCATTAAACCA+AGG + chr1_1:57929638-57929657 None:intergenic 35.0%
ATTAAAAACGAACCTGGTTG+CGG + chr1_1:57929687-57929706 None:intergenic 35.0%
! ACGCATTTGATTAGAAGTGT+CGG + chr1_1:57929720-57929739 None:intergenic 35.0%
CTTCTAATCAAATGCGTGTT+TGG - chr1_1:57929723-57929742 Msa0031230:CDS 35.0%
TCTAATCAAATGCGTGTTTG+GGG - chr1_1:57929725-57929744 Msa0031230:CDS 35.0%
! AAGTTGGTTGAAGAGAAAGA+TGG - chr1_1:57929939-57929958 Msa0031230:CDS 35.0%
! TAGGAGTATGAAATACCTCT+TGG + chr1_1:57930034-57930053 None:intergenic 35.0%
CCTAATTATACTTGCGTGTT+CGG - chr1_1:57930050-57930069 Msa0031230:CDS 35.0%
TCAAACTGAACCGTACTAAA+TGG - chr1_1:57930291-57930310 Msa0031230:intron 35.0%
!!! CGGTTTTGAACCATTTAGTA+CGG + chr1_1:57930304-57930323 None:intergenic 35.0%
CGTACTAAATGGTTCAAAAC+CGG - chr1_1:57930302-57930321 Msa0031230:intron 35.0%
TCTACATTGGGTTATTTGAG+CGG - chr1_1:57930346-57930365 Msa0031230:intron 35.0%
AAAGCAATTGAACTATGACC+TGG - chr1_1:57930403-57930422 Msa0031230:intron 35.0%
!! ATATGCTCTAAAGACGTGTT+AGG + chr1_1:57930487-57930506 None:intergenic 35.0%
TCTGATACCTAACATGTCTT+TGG - chr1_1:57930540-57930559 Msa0031230:CDS 35.0%
!!! GGCTTAAAAAGCTTTTTTGG+TGG - chr1_1:57930756-57930775 Msa0031230:intron 35.0%
CCTATTTAGCTAAACAGATC+AGG + chr1_1:57930789-57930808 None:intergenic 35.0%
CCTGATCTGTTTAGCTAAAT+AGG - chr1_1:57930786-57930805 Msa0031230:intron 35.0%
ATCAAAATAGGGGTGAGAAT+AGG + chr1_1:57930883-57930902 None:intergenic 35.0%
! AGTTGGTTAGGGATTTCTTT+TGG - chr1_1:57931131-57931150 Msa0031230:intron 35.0%
! GTTGGTTAGGGATTTCTTTT+GGG - chr1_1:57931132-57931151 Msa0031230:intron 35.0%
!!! TCTTTTGGGATGATGAGTTT+CGG - chr1_1:57931146-57931165 Msa0031230:intron 35.0%
! TTCAACTATTCAAGAGTGTG+AGG - chr1_1:57931198-57931217 Msa0031230:intron 35.0%
TCTCTATCACTGCAAAAGAA+GGG + chr1_1:57931365-57931384 None:intergenic 35.0%
TTCTCTATCACTGCAAAAGA+AGG + chr1_1:57931366-57931385 None:intergenic 35.0%
ATATCATAGGTCGTCGAATT+TGG - chr1_1:57931387-57931406 Msa0031230:intron 35.0%
TATCATAGGTCGTCGAATTT+GGG - chr1_1:57931388-57931407 Msa0031230:intron 35.0%
GCTTAGAGTTAACAATAGAC+GGG + chr1_1:57931470-57931489 None:intergenic 35.0%
GGCTTAGAGTTAACAATAGA+CGG + chr1_1:57931471-57931490 None:intergenic 35.0%
TCTATTGTTAACTCTAAGCC+TGG - chr1_1:57931471-57931490 Msa0031230:intron 35.0%
GAAACACTCATCAAACTAAG+TGG + chr1_1:57931551-57931570 None:intergenic 35.0%
CTCTATGAAATCAAAAGGAC+GGG + chr1_1:57931798-57931817 None:intergenic 35.0%
CCTAGTTGGTTAATTATCCA+TGG + chr1_1:57931857-57931876 None:intergenic 35.0%
CCATGGATAATTAACCAACT+AGG - chr1_1:57931854-57931873 Msa0031230:intron 35.0%
!! TGATGAAAAAGGTACCTAGT+TGG + chr1_1:57931871-57931890 None:intergenic 35.0%
!!! ATGGTTTTTAGTAGCAGTGT+CGG - chr1_1:57931954-57931973 Msa0031230:intron 35.0%
AACATTGTACAGGTACACAT+TGG + chr1_1:57932362-57932381 None:intergenic 35.0%
TTTGGCATACCAAAATCACA+AGG + chr1_1:57932537-57932556 None:intergenic 35.0%
!! TTGTGATTTTGGTATGCCAA+AGG - chr1_1:57932536-57932555 Msa0031230:intron 35.0%
AGATGTGTGTAAGTCTCTAA+TGG + chr1_1:57932605-57932624 None:intergenic 35.0%
TTATTAGCACATGCTGACAA+TGG + chr1_1:57932822-57932841 None:intergenic 35.0%
! ATACCTAAGCTTCTAGTTGT+TGG - chr1_1:57932960-57932979 Msa0031230:intron 35.0%
!! AAACCATTTCTCTAGAACCA+TGG + chr1_1:57933188-57933207 None:intergenic 35.0%
!! TGATGATGCAGCTTTTTAAG+TGG - chr1_1:57933234-57933253 Msa0031230:CDS 35.0%
! TGTTGGAAGTGTGGAAGAAT+TGG + chr1_1:57929372-57929391 None:intergenic 40.0%
ATTGTTCTGCTGTTGTTCCT+CGG + chr1_1:57929435-57929454 None:intergenic 40.0%
GTGGAGCTATGAATGTAACA+AGG + chr1_1:57929505-57929524 None:intergenic 40.0%
!! GTTATCTTCGGTGTTGTTGT+TGG - chr1_1:57929536-57929555 Msa0031230:three_prime_UTR 40.0%
TTAGGCTGAATAGCCCATTT+GGG + chr1_1:57929575-57929594 None:intergenic 40.0%
ATTAGGCTGAATAGCCCATT+TGG + chr1_1:57929576-57929595 None:intergenic 40.0%
CTAATCAAATGCGTGTTTGG+GGG - chr1_1:57929726-57929745 Msa0031230:CDS 40.0%
CACATGTGTGGATATTGTGT+TGG + chr1_1:57929761-57929780 None:intergenic 40.0%
! TTCTGGTGGTGAAAGTGAAA+AGG - chr1_1:57929872-57929891 Msa0031230:CDS 40.0%
! TCTGGTGGTGAAAGTGAAAA+GGG - chr1_1:57929873-57929892 Msa0031230:CDS 40.0%
GTGAAAGTGAAAAGGGATTG+AGG - chr1_1:57929880-57929899 Msa0031230:CDS 40.0%
TTGGTTGAAGAGAAAGATGG+TGG - chr1_1:57929942-57929961 Msa0031230:CDS 40.0%
CAAGCTTGGTAAGTCATGTT+TGG + chr1_1:57930002-57930021 None:intergenic 40.0%
CAAACATGACTTACCAAGCT+TGG - chr1_1:57930000-57930019 Msa0031230:CDS 40.0%
CCGAACACGCAAGTATAATT+AGG + chr1_1:57930053-57930072 None:intergenic 40.0%
GTCAATCTAGGGATGAGAAT+TGG - chr1_1:57930184-57930203 Msa0031230:intron 40.0%
GTGTCTGTTCACAGTTAAAC+CGG + chr1_1:57930324-57930343 None:intergenic 40.0%
TGAACAGACACTGTCTACAT+TGG - chr1_1:57930333-57930352 Msa0031230:intron 40.0%
GAACAGACACTGTCTACATT+GGG - chr1_1:57930334-57930353 Msa0031230:intron 40.0%
GACGTGTTAGGTATCAGAAT+AGG + chr1_1:57930475-57930494 None:intergenic 40.0%
! TTTTAGTAGGCAGGTCTAGT+AGG - chr1_1:57930735-57930754 Msa0031230:intron 40.0%
GCTTAGCTTAGGTTAAGCTT+AGG + chr1_1:57930835-57930854 None:intergenic 40.0%
CTTAACCTAAGCTAAGCCAT+AGG - chr1_1:57930838-57930857 Msa0031230:intron 40.0%
AGAAACCTATGGCTTAGCTT+AGG + chr1_1:57930846-57930865 None:intergenic 40.0%
AGCCATAGGTTTCTGTCAAT+CGG - chr1_1:57930852-57930871 Msa0031230:intron 40.0%
AAGAAATCCCTAACCAACTC+AGG + chr1_1:57931130-57931149 None:intergenic 40.0%
GGTTTACAACTCACAACACA+AGG + chr1_1:57931274-57931293 None:intergenic 40.0%
GTATTGCAAAGTATGCTGCA+TGG - chr1_1:57931935-57931954 Msa0031230:intron 40.0%
!! TGGCGTTTTTCAACTTCTTC+AGG - chr1_1:57932148-57932167 Msa0031230:intron 40.0%
!! GGCGTTTTTCAACTTCTTCA+GGG - chr1_1:57932149-57932168 Msa0031230:intron 40.0%
! TCAAGCTTTTGTATTCGTGC+AGG - chr1_1:57932230-57932249 Msa0031230:intron 40.0%
ATGAAGATATGGGCATACCT+TGG - chr1_1:57932697-57932716 Msa0031230:intron 40.0%
TGAAGATATGGGCATACCTT+GGG - chr1_1:57932698-57932717 Msa0031230:intron 40.0%
TCCAGGATCAAACTTCTTGA+CGG + chr1_1:57932763-57932782 None:intergenic 40.0%
TTCTTATACGTACGTAGTCC+AGG + chr1_1:57932780-57932799 None:intergenic 40.0%
CACGTAATCAGCAGTTACTT+TGG + chr1_1:57932859-57932878 None:intergenic 40.0%
TTCAGTCTCCAACAAGTTAC+TGG + chr1_1:57932901-57932920 None:intergenic 40.0%
CTTGTTGGAGACTGAAAATC+AGG - chr1_1:57932905-57932924 Msa0031230:intron 40.0%
TCTTCTGATGACAAACCGAT+CGG - chr1_1:57932930-57932949 Msa0031230:intron 40.0%
TATTCCAAATACAACCGCCT+TGG + chr1_1:57933030-57933049 None:intergenic 40.0%
! TTGTATTTGGAATAGCCCGA+CGG - chr1_1:57933036-57933055 Msa0031230:intron 40.0%
! TTCCGAATTTTCCAAACCGT+CGG + chr1_1:57933055-57933074 None:intergenic 40.0%
GTTTCTTGTCGAGGAAATAC+CGG - chr1_1:57933113-57933132 Msa0031230:CDS 40.0%
CTCTATTGCCACAACTTACT+TGG + chr1_1:57933142-57933161 None:intergenic 40.0%
TTGTATCAAATTGGCAGCCA+TGG - chr1_1:57933168-57933187 Msa0031230:CDS 40.0%
ATACACAGCGCGATTGTTGT+TGG + chr1_1:57929389-57929408 None:intergenic 45.0%
!! TCTTCGGTGTTGTTGTTGGT+TGG - chr1_1:57929540-57929559 Msa0031230:three_prime_UTR 45.0%
!! CTTCGGTGTTGTTGTTGGTT+GGG - chr1_1:57929541-57929560 Msa0031230:three_prime_UTR 45.0%
TTGGGCTTGGAAACCCAAAT+GGG - chr1_1:57929559-57929578 Msa0031230:three_prime_UTR 45.0%
TCAGAGCTTCAAAACCAACC+TGG - chr1_1:57929650-57929669 Msa0031230:exon 45.0%
GCTTCAAAACCAACCTGGTT+TGG - chr1_1:57929655-57929674 Msa0031230:exon 45.0%
! GGGATTGAGGAGTATAGTGA+CGG - chr1_1:57929893-57929912 Msa0031230:CDS 45.0%
ACCAGCTTGGATTCAGATGA+TGG - chr1_1:57929965-57929984 Msa0031230:CDS 45.0%
TCCATCATCTGAATCCAAGC+TGG + chr1_1:57929969-57929988 None:intergenic 45.0%
TGCGTGTTCGGTTATCTAGT+TGG - chr1_1:57930062-57930081 Msa0031230:CDS 45.0%
GTGCTTCACCAATTAGGTAG+TGG - chr1_1:57930093-57930112 Msa0031230:intron 45.0%
ATCCTAAGTTGTTCTCGGCT+TGG + chr1_1:57930210-57930229 None:intergenic 45.0%
TTATTTGAGCGGTTCAACCG+TGG - chr1_1:57930357-57930376 Msa0031230:intron 45.0%
AGCTAAACAGATCAGGCTAC+TGG + chr1_1:57930782-57930801 None:intergenic 45.0%
GACCGATTGACAGAAACCTA+TGG + chr1_1:57930857-57930876 None:intergenic 45.0%
ACCACAGTATCGCAGTAGAA+CGG - chr1_1:57931087-57931106 Msa0031230:intron 45.0%
! ATTCAAGAGTGTGAGGTCAC+TGG - chr1_1:57931205-57931224 Msa0031230:intron 45.0%
TGAGGTCACTGGAACAATGA+TGG - chr1_1:57931216-57931235 Msa0031230:intron 45.0%
! TGGAACAATGATGGTGCAGT+GGG - chr1_1:57931225-57931244 Msa0031230:intron 45.0%
AATTAGTGATGTCGGCGTGT+TGG - chr1_1:57932042-57932061 Msa0031230:intron 45.0%
TACCTTGTTCCTCCATACCA+AGG - chr1_1:57932174-57932193 Msa0031230:intron 45.0%
ACACTTCACATGAAGTCAGC+TGG + chr1_1:57932665-57932684 None:intergenic 45.0%
! TGCTGATTACGTGAGATCTC+TGG - chr1_1:57932866-57932885 Msa0031230:intron 45.0%
! AGACTCGACCAGTAACTTGT+TGG - chr1_1:57932890-57932909 Msa0031230:intron 45.0%
CTTCTGATGACAAACCGATC+GGG - chr1_1:57932931-57932950 Msa0031230:intron 45.0%
TTAGGTATGCTTCTCCCGAT+CGG + chr1_1:57932948-57932967 None:intergenic 45.0%
! CCTAAGCTTCTAGTTGTTGG+CGG - chr1_1:57932963-57932982 Msa0031230:intron 45.0%
! CTAAGCTTCTAGTTGTTGGC+GGG - chr1_1:57932964-57932983 Msa0031230:intron 45.0%
! TAAGCTTCTAGTTGTTGGCG+GGG - chr1_1:57932965-57932984 Msa0031230:intron 45.0%
! TCCGAATTTTCCAAACCGTC+GGG + chr1_1:57933054-57933073 None:intergenic 45.0%
! GACGGTTTGGAAAATTCGGA+AGG - chr1_1:57933054-57933073 Msa0031230:CDS 45.0%
GGTTTGGAAAATTCGGAAGG+AGG - chr1_1:57933057-57933076 Msa0031230:CDS 45.0%
!! CAGCCATGGTTCTAGAGAAA+TGG - chr1_1:57933182-57933201 Msa0031230:CDS 45.0%
!! TTTATTAATATTACTATTAT+TGG + chr1_1:57930701-57930720 None:intergenic 5.0%
! CGCGATTGTTGTTGGAAGTG+TGG + chr1_1:57929381-57929400 None:intergenic 50.0%
TTATCCTTTCGGTTCCACCG+AGG - chr1_1:57929415-57929434 Msa0031230:three_prime_UTR 50.0%
! GTGTTGTTGTTGGTTGGGCT+TGG - chr1_1:57929546-57929565 Msa0031230:three_prime_UTR 50.0%
GTTGGGCTTGGAAACCCAAA+TGG - chr1_1:57929558-57929577 Msa0031230:three_prime_UTR 50.0%
! CGGAGTATTCCAAACCAGGT+TGG + chr1_1:57929667-57929686 None:intergenic 50.0%
! GTTGCGGAGTATTCCAAACC+AGG + chr1_1:57929671-57929690 None:intergenic 50.0%
! GTTTGGAATACTCCGCAACC+AGG - chr1_1:57929672-57929691 Msa0031230:CDS 50.0%
! ATTGTTTCTTGGGGGCAGTG+TGG - chr1_1:57929784-57929803 Msa0031230:CDS 50.0%
CATGTCACGTGCAGTTCTTC+TGG - chr1_1:57929855-57929874 Msa0031230:CDS 50.0%
!! AGAAAGATGGTGGACCAGCT+TGG - chr1_1:57929952-57929971 Msa0031230:CDS 50.0%
TGACTTACCAAGCTTGGCGT+AGG - chr1_1:57930006-57930025 Msa0031230:CDS 50.0%
GACTTACCAAGCTTGGCGTA+GGG - chr1_1:57930007-57930026 Msa0031230:CDS 50.0%
!!! GTTCAACCGTGGTTTTGTCC+AGG - chr1_1:57930368-57930387 Msa0031230:intron 50.0%
CTCGAACCTGGACAAAACCA+CGG + chr1_1:57930377-57930396 None:intergenic 50.0%
!!! TGGTTTTGTCCAGGTTCGAG+CGG - chr1_1:57930377-57930396 Msa0031230:intron 50.0%
! TGCTTTAAACCGCTCGAACC+TGG + chr1_1:57930389-57930408 None:intergenic 50.0%
CTATGACCTGGAGTTCTCAC+CGG - chr1_1:57930415-57930434 Msa0031230:intron 50.0%
!! AGTTCTCACCGGCTTGGTTT+CGG - chr1_1:57930426-57930445 Msa0031230:intron 50.0%
ATCCAAACCCGAAACCAAGC+CGG + chr1_1:57930437-57930456 None:intergenic 50.0%
GTTCTACTGCGATACTGTGG+TGG + chr1_1:57931088-57931107 None:intergenic 50.0%
ACCGTTCTACTGCGATACTG+TGG + chr1_1:57931091-57931110 None:intergenic 50.0%
TGAAGATGCGAGTCCTGAGT+TGG - chr1_1:57931114-57931133 Msa0031230:intron 50.0%
!! ATGCGAGTCCTGAGTTGGTT+AGG - chr1_1:57931119-57931138 Msa0031230:intron 50.0%
!! TGCGAGTCCTGAGTTGGTTA+GGG - chr1_1:57931120-57931139 Msa0031230:intron 50.0%
ATGATGAGTTTCGGTCGAGG+TGG - chr1_1:57931155-57931174 Msa0031230:intron 50.0%
TGATGAGTTTCGGTCGAGGT+GGG - chr1_1:57931156-57931175 Msa0031230:intron 50.0%
! CTGGAACAATGATGGTGCAG+TGG - chr1_1:57931224-57931243 Msa0031230:intron 50.0%
TGCCTTGGTATGGAGGAACA+AGG + chr1_1:57932179-57932198 None:intergenic 50.0%
TTTGCTCTGCCTTGGTATGG+AGG + chr1_1:57932186-57932205 None:intergenic 50.0%
! AGGTTTGCTCTGCCTTGGTA+TGG + chr1_1:57932189-57932208 None:intergenic 50.0%
! CGTTTAGGTTTGCTCTGCCT+TGG + chr1_1:57932194-57932213 None:intergenic 50.0%
CATGGAACTGGAAGCTAGCA+TGG - chr1_1:57932440-57932459 Msa0031230:intron 50.0%
CCAAGCTTAGCGATTTCCCA+AGG + chr1_1:57932717-57932736 None:intergenic 50.0%
CCTTGGGAAATCGCTAAGCT+TGG - chr1_1:57932714-57932733 Msa0031230:CDS 50.0%
GCTAAGCTTGGAGTTCGTCA+GGG - chr1_1:57932726-57932745 Msa0031230:CDS 50.0%
TTGGAGTTCGTCAGGGTATG+TGG - chr1_1:57932733-57932752 Msa0031230:CDS 50.0%
TGGAGTTCGTCAGGGTATGT+GGG - chr1_1:57932734-57932753 Msa0031230:CDS 50.0%
GCCGTCAAGAAGTTTGATCC+TGG - chr1_1:57932759-57932778 Msa0031230:CDS 50.0%
ACATGCTGACAATGGAACGC+CGG + chr1_1:57932814-57932833 None:intergenic 50.0%
CCGCCAACAACTAGAAGCTT+AGG + chr1_1:57932966-57932985 None:intergenic 50.0%
! TTGATCAAGGGTGCAGGCAA+GGG + chr1_1:57932997-57933016 None:intergenic 50.0%
TTGCCTGCACCCTTGATCAA+GGG - chr1_1:57932997-57933016 Msa0031230:intron 50.0%
GGTCACTAGCCCTTGATCAA+GGG + chr1_1:57933009-57933028 None:intergenic 50.0%
TGGTCACTAGCCCTTGATCA+AGG + chr1_1:57933010-57933029 None:intergenic 50.0%
! TGATCAAGGGCTAGTGACCA+AGG - chr1_1:57933010-57933029 Msa0031230:intron 50.0%
GTGACCAAGGCGGTTGTATT+TGG - chr1_1:57933023-57933042 Msa0031230:intron 50.0%
! TTTGGAATAGCCCGACGGTT+TGG - chr1_1:57933041-57933060 Msa0031230:intron 50.0%
! GCCCGACGGTTTGGAAAATT+CGG - chr1_1:57933050-57933069 Msa0031230:intron 50.0%
TCTTGTCGAGGAAATACCGG+CGG - chr1_1:57933116-57933135 Msa0031230:CDS 50.0%
TGTTCCTCGGTGGAACCGAA+AGG + chr1_1:57929422-57929441 None:intergenic 55.0%
GTTCTGCTGTTGTTCCTCGG+TGG + chr1_1:57929432-57929451 None:intergenic 55.0%
GTCACGTGCAGTTCTTCTGG+TGG - chr1_1:57929858-57929877 Msa0031230:CDS 55.0%
GGCCAAGCCGAGAACAACTT+AGG - chr1_1:57930205-57930224 Msa0031230:intron 55.0%
!! GTTCTCACCGGCTTGGTTTC+GGG - chr1_1:57930427-57930446 Msa0031230:intron 55.0%
GGGATGATGAGTTTCGGTCG+AGG - chr1_1:57931152-57931171 Msa0031230:intron 55.0%
CGCTAAGCTTGGAGTTCGTC+AGG - chr1_1:57932725-57932744 Msa0031230:CDS 55.0%
GGAGTTCGTCAGGGTATGTG+GGG - chr1_1:57932735-57932754 Msa0031230:CDS 55.0%
! CTTGATCAAGGGTGCAGGCA+AGG + chr1_1:57932998-57933017 None:intergenic 55.0%
CTTGCCTGCACCCTTGATCA+AGG - chr1_1:57932996-57933015 Msa0031230:intron 55.0%
! TAGCCCTTGATCAAGGGTGC+AGG + chr1_1:57933003-57933022 None:intergenic 55.0%
! TCAAGGGCTAGTGACCAAGG+CGG - chr1_1:57933013-57933032 Msa0031230:intron 55.0%
CTTGGTCCCTACGCCAAGCT+TGG + chr1_1:57930016-57930035 None:intergenic 60.0%
AGCTTGGCGTAGGGACCAAG+AGG - chr1_1:57930016-57930035 Msa0031230:CDS 60.0%
! ACCTGGAGTTCTCACCGGCT+TGG - chr1_1:57930420-57930439 Msa0031230:intron 60.0%
ACCAAGCCGGTGAGAACTCC+AGG + chr1_1:57930424-57930443 None:intergenic 60.0%
!! CACCGGCTTGGTTTCGGGTT+TGG - chr1_1:57930432-57930451 Msa0031230:intron 60.0%
GATGGTGCAGTGGGTACGCA+AGG - chr1_1:57931234-57931253 Msa0031230:intron 60.0%
! AAGGGTGCAGGCAAGGGCAA+TGG + chr1_1:57932991-57933010 None:intergenic 60.0%
ACCGGCGGCCAAGTAAGTTG+TGG - chr1_1:57933131-57933150 Msa0031230:CDS 60.0%
GCCACAACTTACTTGGCCGC+CGG + chr1_1:57933135-57933154 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57929235 57933510 57929235 ID=Msa0031230;Name=Msa0031230
chr1_1 mRNA 57929235 57933510 57929235 ID=Msa0031230-mRNA-1;Parent=Msa0031230;Name=Msa0031230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=223|1|1|1|1|1|6|425|396
chr1_1 exon 57929235 57930102 57929235 ID=Msa0031230-mRNA-1:exon:17572;Parent=Msa0031230-mRNA-1
chr1_1 exon 57930494 57930575 57930494 ID=Msa0031230-mRNA-1:exon:17571;Parent=Msa0031230-mRNA-1
chr1_1 exon 57931303 57931386 57931303 ID=Msa0031230-mRNA-1:exon:17570;Parent=Msa0031230-mRNA-1
chr1_1 exon 57931490 57931666 57931490 ID=Msa0031230-mRNA-1:exon:17569;Parent=Msa0031230-mRNA-1
chr1_1 exon 57932708 57932876 57932708 ID=Msa0031230-mRNA-1:exon:17568;Parent=Msa0031230-mRNA-1
chr1_1 exon 57933052 57933510 57933052 ID=Msa0031230-mRNA-1:exon:17567;Parent=Msa0031230-mRNA-1
chr1_1 five_prime_UTR 57933288 57933510 57933288 ID=Msa0031230-mRNA-1:five_prime_utr;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57933052 57933287 57933052 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57932708 57932876 57932708 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57931490 57931666 57931490 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57931303 57931386 57931303 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57930494 57930575 57930494 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 CDS 57929660 57930102 57929660 ID=Msa0031230-mRNA-1:cds;Parent=Msa0031230-mRNA-1
chr1_1 three_prime_UTR 57929235 57929659 57929235 ID=Msa0031230-mRNA-1:three_prime_utr;Parent=Msa0031230-mRNA-1
Gene Sequence

>Msa0031230

ATGTTCGAGAATTCCTCTGTTGTTGTTATGGATATCTTGGGTAACCTTGTTACATTCATAGCTCCACTTTGGATTGCTGTTATCTTCGGTGTTGTTGTTGGTTGGGCTTGGAAACCCAAATGGGCTATTCAGCCTAATAACTATTCTTGGAGTACTAATCTCTTCAAGTTTCGAATTCCTTGGTTTAATGATTCAGAGCTTCAAAACCAACCTGGTTTGGAATACTCCGCAACCAGTTCTTCTGGTGGTGAAAGTGAAAAGGGATTGAGGAGTATAGTGACGGAACATGATTTGCAAAATTTGTGTAAGTTGGTTGAAGAGAAAGATGGTGGACCAGCTTGGATTCAGATGATGGATCGTTCTACACCAAACATGACTTACCAAGCTTGGCGTAGGGACCAAGAGAATGGACCACCACAGTATCGCAGTAGAACGGTGTTTGAAGATGCGAGTCCTGAGTTGGTTAGGGATTTCTTTTGGGATGATGAGTTTCGGTCGAGGTGGGATGATATGCTTATACATGCTTCAACTATTCAAGAGTGTGAGGTCACTGGAACAATGATGGTGCAGTGGGTACGCAAGTTTCCCTTCTTTTGCAGTGATAGAGAATATATCATAGGTCGTCGAATTTGGGATGCTGAGCGAACTTATTACTGTGTGACTAAGGGTGTACCTTGTTCCTCCATACCAAGGCAGAGCAAACCTAAACGAGTAGATCTATATTATTCAAGCTTTTGTATTCGTGCAGTTAAATCAAGAAAAGATGACCAGCTGACTTCATGTGAAGTGTTGTTCTTTCACTATGAAGATATGGGCATACCTTGGGAAATCGCTAAGCTTGGAGTTCGTCAGGGTATGTGGGGAGCCGTCAAGAAGTTTGATCCTGGACTACGTACGTATAAGAAAGAAAGGGATTCCGGCGTTCCATTGTCAGCATGTGCTAATAACGCTAAAATCAATACCAAAGTAACTGCTGATTACGTGAGATCTCTGGAAGACTCGACCAGTAACTTGTTGGAGACTGAAAATCAGGATTCTTCTGATGACAAACCGATCGGGAGAAGCATACCTAAGCTTCTAGTTGTTGGCGGGGCCATTGCCCTTGCCTGCACCCTTGATCAAGGGCTAGTGACCAAGGCGGTTGTATTTGGAATAGCCCGACGGTTTGGAAAATTCGGAAGGAGGTTGTGA
Protein sequence

>Msa0031230

MFENSSVVVMDILGNLVTFIAPLWIAVIFGVVVGWAWKPKWAIQPNNYSWSTNLFKFRIPWFNDSELQNQPGLEYSATSSSGGESEKGLRSIVTEHDLQNLCKLVEEKDGGPAWIQMMDRSTPNMTYQAWRRDQENGPPQYRSRTVFEDASPELVRDFFWDDEFRSRWDDMLIHASTIQECEVTGTMMVQWVRKFPFFCSDREYIIGRRIWDAERTYYCVTKGVPCSSIPRQSKPKRVDLYYSSFCIRAVKSRKDDQLTSCEVLFFHYEDMGIPWEIAKLGVRQGMWGAVKKFDPGLRTYKKERDSGVPLSACANNAKINTKVTADYVRSLEDSTSNLLETENQDSSDDKPIGRSIPKLLVVGGAIALACTLDQGLVTKAVVFGIARRFGKFGRRL*