Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171160 | XP_013468879.1 | 97.484 | 318 | 8 | 0 | 1 | 318 | 78 | 395 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171160 | A0A072VMT6 | 97.484 | 318 | 8 | 0 | 1 | 318 | 78 | 395 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031230 | Msa0171160 | 0.826220 | 3.056980e-54 | -8.615850e-47 |
| Msa0078520 | Msa0171160 | 0.816375 | 5.712595e-52 | -8.615850e-47 |
| Msa0126300 | Msa0171160 | 0.813313 | 2.726375e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171160 | MtrunA17_Chr1g0189151 | 97.484 | 318 | 8 | 0 | 1 | 318 | 78 | 395 | 0.0 | 643 |
| Msa0171160 | MtrunA17_Chr3g0127861 | 63.125 | 320 | 115 | 2 | 1 | 317 | 105 | 424 | 2.85e-158 | 449 |
| Msa0171160 | MtrunA17_Chr5g0395041 | 50.955 | 314 | 149 | 4 | 3 | 313 | 124 | 435 | 1.05e-106 | 318 |
| Msa0171160 | MtrunA17_Chr4g0000091 | 30.104 | 289 | 183 | 7 | 14 | 291 | 71 | 351 | 1.58e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171160 | AT1G64720.1 | 67.732 | 313 | 92 | 2 | 7 | 318 | 81 | 385 | 1.38e-159 | 451 |
| Msa0171160 | AT5G54170.1 | 57.595 | 316 | 128 | 4 | 6 | 317 | 120 | 433 | 7.05e-129 | 375 |
| Msa0171160 | AT4G14500.1 | 52.866 | 314 | 143 | 3 | 1 | 313 | 123 | 432 | 2.56e-112 | 332 |
| Msa0171160 | AT3G23080.2 | 52.632 | 304 | 139 | 5 | 12 | 313 | 87 | 387 | 3.57e-103 | 308 |
| Msa0171160 | AT3G23080.3 | 52.632 | 304 | 139 | 5 | 12 | 313 | 87 | 387 | 3.57e-103 | 308 |
| Msa0171160 | AT3G23080.1 | 52.787 | 305 | 137 | 6 | 12 | 313 | 118 | 418 | 1.78e-102 | 307 |
| Msa0171160 | AT4G14500.2 | 52.258 | 155 | 72 | 1 | 1 | 153 | 123 | 277 | 6.13e-51 | 171 |
| Msa0171160 | AT3G13062.1 | 31.111 | 315 | 201 | 8 | 13 | 317 | 82 | 390 | 2.04e-40 | 146 |
| Msa0171160 | AT3G13062.2 | 31.111 | 315 | 201 | 8 | 13 | 317 | 82 | 390 | 4.39e-40 | 145 |
| Msa0171160 | AT3G13062.3 | 30.031 | 323 | 202 | 8 | 13 | 317 | 82 | 398 | 3.52e-38 | 140 |
| Msa0171160 | AT1G55960.1 | 31.457 | 302 | 186 | 9 | 5 | 291 | 73 | 368 | 9.10e-37 | 136 |
| Msa0171160 | AT1G55960.2 | 29.139 | 302 | 168 | 11 | 5 | 291 | 73 | 343 | 3.44e-24 | 101 |
Find 106 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCATAGGTCGTCGAATT+TGG | 0.185811 | 1_4:+55790192 | Msa0171160:CDS |
| AGTTGGTTAGGGATTTCTTT+TGG | 0.205035 | 1_4:+55789936 | Msa0171160:CDS |
| GTGACCAAGGCGGTTGTATT+TGG | 0.231338 | 1_4:+55791828 | Msa0171160:CDS |
| GTTCTTTCACTATGAAGATA+TGG | 0.258130 | 1_4:+55791491 | Msa0171160:CDS |
| TTCAGTCTCCAACAAGTTAC+TGG | 0.286635 | 1_4:-55791703 | None:intergenic |
| TAATATAGATCTACTCGTTT+AGG | 0.288020 | 1_4:-55791011 | None:intergenic |
| CTCTATTGCCACAACTTACT+TGG | 0.298101 | 1_4:-55791944 | None:intergenic |
| CTTGCCTGCACCCTTGATCA+AGG | 0.320705 | 1_4:+55791801 | Msa0171160:CDS |
| CGCTAAGCTTGGAGTTCGTC+AGG | 0.333843 | 1_4:+55791530 | Msa0171160:CDS |
| CATGTCACGTGCAGTTCTTC+TGG | 0.349830 | 1_4:+55788667 | None:intergenic |
| CTTGTTGGAGACTGAAAATC+AGG | 0.353763 | 1_4:+55791710 | Msa0171160:CDS |
| ATGCGAGTCCTGAGTTGGTT+AGG | 0.358805 | 1_4:+55789924 | Msa0171160:CDS |
| TATCATAGGTCGTCGAATTT+GGG | 0.370573 | 1_4:+55790193 | Msa0171160:CDS |
| TTCTTTCACTATGAAGATAT+GGG | 0.383405 | 1_4:+55791492 | Msa0171160:CDS |
| CATGAATAATATCAATAATC+AGG | 0.390673 | 1_4:+55792112 | Msa0171160:three_prime_UTR |
| CAGCCATGGTTCTAGAGAAA+TGG | 0.390877 | 1_4:+55791987 | Msa0171160:three_prime_UTR |
| GCCCGACGGTTTGGAAAATT+CGG | 0.400471 | 1_4:+55791855 | Msa0171160:CDS |
| TTTGGAATAGCCCGACGGTT+TGG | 0.406644 | 1_4:+55791846 | Msa0171160:CDS |
| TATAAGAAAGAAAGGGATTC+CGG | 0.417822 | 1_4:+55791597 | Msa0171160:CDS |
| CGTTTAGGTTTGCTCTGCCT+TGG | 0.417964 | 1_4:-55790996 | None:intergenic |
| TTCTCTATCACTGCAAAAGA+AGG | 0.424377 | 1_4:-55790168 | None:intergenic |
| AGGTTTGCTCTGCCTTGGTA+TGG | 0.426290 | 1_4:-55790991 | None:intergenic |
| ATACCTAAGCTTCTAGTTGT+TGG | 0.433725 | 1_4:+55791765 | Msa0171160:CDS |
| TTTGCAAAATTTGTGTAAGT+TGG | 0.443993 | 1_4:+55788735 | Msa0171160:CDS |
| CAAGCTTGGTAAGTCATGTT+TGG | 0.447227 | 1_4:-55788811 | None:intergenic |
| TGGTCACTAGCCCTTGATCA+AGG | 0.452319 | 1_4:-55791812 | None:intergenic |
| TTGGAGTTCGTCAGGGTATG+TGG | 0.453950 | 1_4:+55791538 | Msa0171160:CDS |
| CACGTAATCAGCAGTTACTT+TGG | 0.455464 | 1_4:-55791661 | None:intergenic |
| TGCTGATTACGTGAGATCTC+TGG | 0.460180 | 1_4:+55791671 | Msa0171160:CDS |
| TACGTACGTATAAGAAAGAA+AGG | 0.462465 | 1_4:+55791589 | Msa0171160:CDS |
| TTCTGGTGGTGAAAGTGAAA+AGG | 0.469810 | 1_4:+55788684 | Msa0171160:CDS |
| TGCGAGTCCTGAGTTGGTTA+GGG | 0.472434 | 1_4:+55789925 | Msa0171160:CDS |
| CTAAGCTTCTAGTTGTTGGC+GGG | 0.478011 | 1_4:+55791769 | Msa0171160:CDS |
| CTTGATCAAGGGTGCAGGCA+AGG | 0.479777 | 1_4:-55791800 | None:intergenic |
| TTGTATCAAATTGGCAGCCA+TGG | 0.482398 | 1_4:+55791973 | Msa0171160:three_prime_UTR |
| CCTAAGCTTCTAGTTGTTGG+CGG | 0.482710 | 1_4:+55791768 | Msa0171160:CDS |
| TCTGGTGGTGAAAGTGAAAA+GGG | 0.485541 | 1_4:+55788685 | Msa0171160:CDS |
| TTCTTATACGTACGTAGTCC+AGG | 0.487357 | 1_4:-55791582 | None:intergenic |
| ATGAAGATATGGGCATACCT+TGG | 0.492383 | 1_4:+55791502 | Msa0171160:CDS |
| TGAAGATATGGGCATACCTT+GGG | 0.500114 | 1_4:+55791503 | Msa0171160:CDS |
| TCCAGGATCAAACTTCTTGA+CGG | 0.500862 | 1_4:-55791565 | None:intergenic |
| GCCGTCAAGAAGTTTGATCC+TGG | 0.503459 | 1_4:+55791564 | Msa0171160:CDS |
| GTTTCTTGTCGAGGAAATAC+CGG | 0.506043 | 1_4:+55791918 | Msa0171160:three_prime_UTR |
| AACTTATTACTGTGTGACTA+AGG | 0.513252 | 1_4:+55790226 | Msa0171160:CDS |
| CTTCTGATGACAAACCGATC+GGG | 0.515089 | 1_4:+55791736 | Msa0171160:CDS |
| CCGCCAACAACTAGAAGCTT+AGG | 0.515981 | 1_4:-55791768 | None:intergenic |
| ACCAGCTTGGATTCAGATGA+TGG | 0.516098 | 1_4:+55788777 | Msa0171160:CDS |
| TTTGCTCTGCCTTGGTATGG+AGG | 0.518246 | 1_4:-55790988 | None:intergenic |
| TTGCCTGCACCCTTGATCAA+GGG | 0.518780 | 1_4:+55791802 | Msa0171160:CDS |
| CCTTGGGAAATCGCTAAGCT+TGG | 0.519071 | 1_4:+55791519 | Msa0171160:CDS |
| AGAAAGATGGTGGACCAGCT+TGG | 0.522059 | 1_4:+55788764 | Msa0171160:CDS |
| TGGAGTTCGTCAGGGTATGT+GGG | 0.522164 | 1_4:+55791539 | Msa0171160:CDS |
| ATTCAAGAGTGTGAGGTCAC+TGG | 0.523985 | 1_4:+55790010 | Msa0171160:CDS |
| TTGATCAAGGGTGCAGGCAA+GGG | 0.525896 | 1_4:-55791799 | None:intergenic |
| CTTGGTCCCTACGCCAAGCT+TGG | 0.528324 | 1_4:-55788825 | None:intergenic |
| AAGGGTGCAGGCAAGGGCAA+TGG | 0.537523 | 1_4:-55791793 | None:intergenic |
| TTAGGTATGCTTCTCCCGAT+CGG | 0.542706 | 1_4:-55791750 | None:intergenic |
| CAAACATGACTTACCAAGCT+TGG | 0.544826 | 1_4:+55788812 | Msa0171160:CDS |
| GCCACAACTTACTTGGCCGC+CGG | 0.547432 | 1_4:-55791937 | None:intergenic |
| GGTCACTAGCCCTTGATCAA+GGG | 0.548340 | 1_4:-55791811 | None:intergenic |
| AGACTCGACCAGTAACTTGT+TGG | 0.549322 | 1_4:+55791695 | Msa0171160:CDS |
| AGTGATAGAGAATATATCAT+AGG | 0.553664 | 1_4:+55790179 | Msa0171160:CDS |
| GGGATGATGAGTTTCGGTCG+AGG | 0.555696 | 1_4:+55789957 | Msa0171160:CDS |
| TAGCCCTTGATCAAGGGTGC+AGG | 0.555894 | 1_4:-55791805 | None:intergenic |
| GTGAAAGTGAAAAGGGATTG+AGG | 0.563385 | 1_4:+55788692 | Msa0171160:CDS |
| TGATGAGTTTCGGTCGAGGT+GGG | 0.565414 | 1_4:+55789961 | Msa0171160:CDS |
| GACTTACCAAGCTTGGCGTA+GGG | 0.568038 | 1_4:+55788819 | Msa0171160:CDS |
| GACGGTTTGGAAAATTCGGA+AGG | 0.568472 | 1_4:+55791859 | Msa0171160:CDS |
| AAGAAATCCCTAACCAACTC+AGG | 0.569522 | 1_4:-55789932 | None:intergenic |
| TGACTTACCAAGCTTGGCGT+AGG | 0.571589 | 1_4:+55788818 | Msa0171160:CDS |
| ACACTTCACATGAAGTCAGC+TGG | 0.574800 | 1_4:-55791467 | None:intergenic |
| AAACCATTTCTCTAGAACCA+TGG | 0.576467 | 1_4:-55791990 | None:intergenic |
| ATGATGAGTTTCGGTCGAGG+TGG | 0.576909 | 1_4:+55789960 | Msa0171160:CDS |
| TCCATCATCTGAATCCAAGC+TGG | 0.578196 | 1_4:-55788778 | None:intergenic |
| TATTCCAAATACAACCGCCT+TGG | 0.579315 | 1_4:-55791832 | None:intergenic |
| TCTCTATCACTGCAAAAGAA+GGG | 0.579682 | 1_4:-55790167 | None:intergenic |
| GATGGTGCAGTGGGTACGCA+AGG | 0.588700 | 1_4:+55790039 | Msa0171160:CDS |
| TAAGCTTCTAGTTGTTGGCG+GGG | 0.595982 | 1_4:+55791770 | Msa0171160:CDS |
| TCTTCTGATGACAAACCGAT+CGG | 0.596047 | 1_4:+55791735 | Msa0171160:CDS |
| GGTTTGGAAAATTCGGAAGG+AGG | 0.596932 | 1_4:+55791862 | Msa0171160:CDS |
| TGAAGATGCGAGTCCTGAGT+TGG | 0.613594 | 1_4:+55789919 | Msa0171160:CDS |
| CCAAGCTTAGCGATTTCCCA+AGG | 0.615945 | 1_4:-55791519 | None:intergenic |
| ACCGGCGGCCAAGTAAGTTG+TGG | 0.616325 | 1_4:+55791936 | Msa0171160:three_prime_UTR |
| ACGTACGTATAAGAAAGAAA+GGG | 0.623052 | 1_4:+55791590 | Msa0171160:CDS |
| TGAGGTCACTGGAACAATGA+TGG | 0.628803 | 1_4:+55790021 | Msa0171160:CDS |
| CTGGAACAATGATGGTGCAG+TGG | 0.630095 | 1_4:+55790029 | Msa0171160:CDS |
| TTATTAGCACATGCTGACAA+TGG | 0.637025 | 1_4:-55791624 | None:intergenic |
| TGATCAAGGGCTAGTGACCA+AGG | 0.638516 | 1_4:+55791815 | Msa0171160:CDS |
| GGGATTGAGGAGTATAGTGA+CGG | 0.640769 | 1_4:+55788705 | Msa0171160:CDS |
| GTCACGTGCAGTTCTTCTGG+TGG | 0.640922 | 1_4:+55788670 | None:intergenic |
| ACCGTTCTACTGCGATACTG+TGG | 0.641157 | 1_4:-55789893 | None:intergenic |
| TTCAACTATTCAAGAGTGTG+AGG | 0.641287 | 1_4:+55790003 | Msa0171160:CDS |
| ACCACAGTATCGCAGTAGAA+CGG | 0.641569 | 1_4:+55789892 | Msa0171160:CDS |
| GTTCTACTGCGATACTGTGG+TGG | 0.646637 | 1_4:-55789890 | None:intergenic |
| TTGGTTGAAGAGAAAGATGG+TGG | 0.647060 | 1_4:+55788754 | Msa0171160:CDS |
| GGAGTTCGTCAGGGTATGTG+GGG | 0.647398 | 1_4:+55791540 | Msa0171160:CDS |
| AGCTTGGCGTAGGGACCAAG+AGG | 0.653449 | 1_4:+55788828 | Msa0171160:CDS |
| TACCTTGTTCCTCCATACCA+AGG | 0.661937 | 1_4:+55790979 | Msa0171160:CDS |
| ACATGCTGACAATGGAACGC+CGG | 0.666475 | 1_4:-55791616 | None:intergenic |
| GCTAAGCTTGGAGTTCGTCA+GGG | 0.670012 | 1_4:+55791531 | Msa0171160:CDS |
| TGGAACAATGATGGTGCAGT+GGG | 0.675173 | 1_4:+55790030 | Msa0171160:CDS |
| TTGTATTTGGAATAGCCCGA+CGG | 0.676217 | 1_4:+55791841 | Msa0171160:CDS |
| TCTTGTCGAGGAAATACCGG+CGG | 0.694884 | 1_4:+55791921 | Msa0171160:three_prime_UTR |
| AAGTTGGTTGAAGAGAAAGA+TGG | 0.710264 | 1_4:+55788751 | Msa0171160:CDS |
| TGCCTTGGTATGGAGGAACA+AGG | 0.712864 | 1_4:-55790981 | None:intergenic |
| TCAAGGGCTAGTGACCAAGG+CGG | 0.799326 | 1_4:+55791818 | Msa0171160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACTATAATTTTTTTTTTTT+TGG | - | chr1_4:55789053-55789072 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATTATAGTC+TGG | + | chr1_4:55789053-55789072 | Msa0171160:intron | 10.0% |
| !! | TTGTAAAATAGAATTTAAAT+AGG | - | chr1_4:55789383-55789402 | None:intergenic | 10.0% |
| !! | ATTAAAAAACAAATTTATCA+TGG | + | chr1_4:55791227-55791246 | Msa0171160:intron | 10.0% |
| !! | CTTATTAATTTAATTAATTG+CGG | + | chr1_4:55791376-55791395 | Msa0171160:intron | 10.0% |
| !! | GTTTAAATTATTGAAAATGT+TGG | + | chr1_4:55789444-55789463 | Msa0171160:intron | 15.0% |
| !!! | AAACATTTTACTATTTTAGT+AGG | + | chr1_4:55789527-55789546 | Msa0171160:intron | 15.0% |
| !! | CAATAAATCATTAATTTAGT+TGG | - | chr1_4:55789826-55789845 | None:intergenic | 15.0% |
| !! | AAATAGTCAATAACAATTTA+TGG | + | chr1_4:55790402-55790421 | Msa0171160:intron | 15.0% |
| !! | TTAAGAATCAAACTACTAAA+TGG | + | chr1_4:55789096-55789115 | Msa0171160:intron | 20.0% |
| !! | TCAATATTTGGCATATTTAA+AGG | - | chr1_4:55789411-55789430 | None:intergenic | 20.0% |
| !!! | AATATGCCAAATATTGATTT+AGG | + | chr1_4:55789414-55789433 | Msa0171160:intron | 20.0% |
| !! | TACTATCCTAAATCAATATT+TGG | - | chr1_4:55789423-55789442 | None:intergenic | 20.0% |
| !! | ACTAATATAGATCAAAATAG+GGG | - | chr1_4:55789698-55789717 | None:intergenic | 20.0% |
| !! | GACTAATATAGATCAAAATA+GGG | - | chr1_4:55789699-55789718 | None:intergenic | 20.0% |
| !! | AATATTATGGATCAATTGAT+TGG | - | chr1_4:55789730-55789749 | None:intergenic | 20.0% |
| !! | AATTGATCCATAATATTGTT+AGG | + | chr1_4:55789733-55789752 | Msa0171160:intron | 20.0% |
| !! | AATGTAACTAAAAACTAATC+TGG | + | chr1_4:55790304-55790323 | Msa0171160:intron | 20.0% |
| !!! | AGTGTTTCTATAATTTATGT+TGG | + | chr1_4:55790368-55790387 | Msa0171160:intron | 20.0% |
| !!! | GTGTTTCTATAATTTATGTT+GGG | + | chr1_4:55790369-55790388 | Msa0171160:intron | 20.0% |
| !!! | GTCTTATATATTGATTTCTT+TGG | + | chr1_4:55790556-55790575 | Msa0171160:intron | 20.0% |
| !!! | TATAACAATGTTGATGAAAA+AGG | - | chr1_4:55790687-55790706 | None:intergenic | 20.0% |
| !! | TTTCATCAACATTGTTATAA+CGG | + | chr1_4:55790688-55790707 | Msa0171160:intron | 20.0% |
| !! | GAAAGTTTACAAAAAAACAT+AGG | - | chr1_4:55790788-55790807 | None:intergenic | 20.0% |
| !! | ACTTTCATGTATATTTGTAT+CGG | + | chr1_4:55790802-55790821 | Msa0171160:intron | 20.0% |
| !!! | GTTTTTTAAATTAGTGATGT+CGG | + | chr1_4:55790839-55790858 | Msa0171160:intron | 20.0% |
| !!! | AATTTTCTCAATCTTTTTAG+AGG | + | chr1_4:55790894-55790913 | Msa0171160:intron | 20.0% |
| !!! | TAGTTTTTAATATCAACTTG+TGG | + | chr1_4:55790933-55790952 | Msa0171160:intron | 20.0% |
| !! | TAAGAATTTAATGATTCCTT+TGG | - | chr1_4:55791360-55791379 | None:intergenic | 20.0% |
| !!! | GAGTTTATTTTGTATCAAAT+TGG | + | chr1_4:55791964-55791983 | Msa0171160:three_prime_UTR | 20.0% |
| !! | CATGAATAATATCAATAATC+AGG | + | chr1_4:55792112-55792131 | Msa0171160:three_prime_UTR | 20.0% |
| ! | TTTGCAAAATTTGTGTAAGT+TGG | + | chr1_4:55788735-55788754 | Msa0171160:CDS | 25.0% |
| ! | AAATTTGATCATGTCAATCT+AGG | + | chr1_4:55788984-55789003 | Msa0171160:intron | 25.0% |
| ! | AATTTGATCATGTCAATCTA+GGG | + | chr1_4:55788985-55789004 | Msa0171160:intron | 25.0% |
| ! | TATTTATCCTAAGTTGTTCT+CGG | - | chr1_4:55789027-55789046 | None:intergenic | 25.0% |
| !!! | ATTGGATTAGATTTTGTATG+TGG | - | chr1_4:55789488-55789507 | None:intergenic | 25.0% |
| !!! | ATTTTACTATTTTAGTAGGC+AGG | + | chr1_4:55789531-55789550 | Msa0171160:intron | 25.0% |
| ! | GGACTAATATAGATCAAAAT+AGG | - | chr1_4:55789700-55789719 | None:intergenic | 25.0% |
| ! | ATTAGTGCCTAACAATATTA+TGG | - | chr1_4:55789743-55789762 | None:intergenic | 25.0% |
| !! | AATCGAGAATGTTCAAATTT+TGG | + | chr1_4:55789765-55789784 | Msa0171160:intron | 25.0% |
| !!! | GTTACTTTTGTTTGTTAGAA+TGG | + | chr1_4:55789866-55789885 | Msa0171160:intron | 25.0% |
| ! | AGTGATAGAGAATATATCAT+AGG | + | chr1_4:55790179-55790198 | Msa0171160:CDS | 25.0% |
| !! | TTAGATGTCTTTTCAGATAT+TGG | + | chr1_4:55790442-55790461 | Msa0171160:intron | 25.0% |
| ! | AACAAAAGAAGCTGATATTT+AGG | - | chr1_4:55790520-55790539 | None:intergenic | 25.0% |
| ! | AAATATTGTGATATTGTCCA+TGG | + | chr1_4:55790642-55790661 | Msa0171160:intron | 25.0% |
| !!! | ATGTATATTTGTATCGGTTT+CGG | + | chr1_4:55790808-55790827 | Msa0171160:intron | 25.0% |
| ! | TAATATAGATCTACTCGTTT+AGG | - | chr1_4:55791014-55791033 | None:intergenic | 25.0% |
| !!! | CAATTTGTTTTTCTCAATCT+TGG | + | chr1_4:55791197-55791216 | Msa0171160:intron | 25.0% |
| ! | CATCATTAATACAAATCACA+AGG | - | chr1_4:55791308-55791327 | None:intergenic | 25.0% |
| !! | TCATCTTTTCTTGATTTAAC+TGG | - | chr1_4:55791447-55791466 | None:intergenic | 25.0% |
| ! | TTCTTTCACTATGAAGATAT+GGG | + | chr1_4:55791492-55791511 | Msa0171160:CDS | 25.0% |
| !! | ATTTTAGTGCTTCACCAATT+AGG | + | chr1_4:55788899-55788918 | Msa0171160:intron | 30.0% |
| TACAATTTCCACTACCTAAT+TGG | - | chr1_4:55788916-55788935 | None:intergenic | 30.0% | |
| AATTATAGTCTGGTATGACT+TGG | + | chr1_4:55789063-55789082 | Msa0171160:intron | 30.0% | |
| ACTACTAAATGGTTCAAAAC+CGG | + | chr1_4:55789107-55789126 | Msa0171160:intron | 30.0% | |
| ! | ATATTCTCTAAAGACGTGTT+AGG | - | chr1_4:55789292-55789311 | None:intergenic | 30.0% |
| ATATTCTCCAAAGACATGTT+AGG | - | chr1_4:55789355-55789374 | None:intergenic | 30.0% | |
| !!! | GTAGGCTTAAAAAGCTTTTT+TGG | + | chr1_4:55789558-55789577 | Msa0171160:intron | 30.0% |
| GATCAATTGATTGGTACAAA+AGG | - | chr1_4:55789721-55789740 | None:intergenic | 30.0% | |
| TCACTTCATAGTCATATCTA+AGG | - | chr1_4:55790100-55790119 | None:intergenic | 30.0% | |
| AACTTATTACTGTGTGACTA+AGG | + | chr1_4:55790226-55790245 | Msa0171160:CDS | 30.0% | |
| !! | TTTTAGTTACATTGTCTTCC+AGG | - | chr1_4:55790297-55790316 | None:intergenic | 30.0% |
| ! | AAAACTAATCTGGAGAGTTT+TGG | + | chr1_4:55790314-55790333 | Msa0171160:intron | 30.0% |
| AAAAGAAGCTGATATTTAGG+AGG | - | chr1_4:55790517-55790536 | None:intergenic | 30.0% | |
| ACTCTATGAAATCAAAAGGA+CGG | - | chr1_4:55790604-55790623 | None:intergenic | 30.0% | |
| AGAGACTCTATGAAATCAAA+AGG | - | chr1_4:55790608-55790627 | None:intergenic | 30.0% | |
| ! | ATCAACATTGTTATAACGGA+AGG | + | chr1_4:55790692-55790711 | Msa0171160:intron | 30.0% |
| AGTTCAAGAAAACATTGTAC+AGG | - | chr1_4:55791177-55791196 | None:intergenic | 30.0% | |
| ! | TTTTTCTCAATCTTGGTCAT+TGG | + | chr1_4:55791204-55791223 | Msa0171160:intron | 30.0% |
| ! | TAGCATGGTAGATTTTTGAT+AGG | + | chr1_4:55791260-55791279 | Msa0171160:intron | 30.0% |
| ! | ATTGCTATACCTTGTGATTT+TGG | + | chr1_4:55791330-55791349 | Msa0171160:intron | 30.0% |
| GTTCTTTCACTATGAAGATA+TGG | + | chr1_4:55791491-55791510 | Msa0171160:CDS | 30.0% | |
| TACGTACGTATAAGAAAGAA+AGG | + | chr1_4:55791589-55791608 | Msa0171160:CDS | 30.0% | |
| ACGTACGTATAAGAAAGAAA+GGG | + | chr1_4:55791590-55791609 | Msa0171160:CDS | 30.0% | |
| TATAAGAAAGAAAGGGATTC+CGG | + | chr1_4:55791597-55791616 | Msa0171160:CDS | 30.0% | |
| !! | TTTCTTTTTGTTTCTTGTCG+AGG | + | chr1_4:55791909-55791928 | Msa0171160:three_prime_UTR | 30.0% |
| !!! | CAGCTTTTTAAGTGGAAATA+TGG | + | chr1_4:55792047-55792066 | Msa0171160:three_prime_UTR | 30.0% |
| ! | AAGTTGGTTGAAGAGAAAGA+TGG | + | chr1_4:55788751-55788770 | Msa0171160:CDS | 35.0% |
| ! | TAGGAGTATGAAATACCTCT+TGG | - | chr1_4:55788846-55788865 | None:intergenic | 35.0% |
| CCTAATTATACTTGCGTGTT+CGG | + | chr1_4:55788862-55788881 | Msa0171160:intron | 35.0% | |
| TCTACATTGGGTTATTTGAG+CGG | + | chr1_4:55789151-55789170 | Msa0171160:intron | 35.0% | |
| AAAGCAATTGAACTATGACC+TGG | + | chr1_4:55789208-55789227 | Msa0171160:intron | 35.0% | |
| TCTGATACCTAACATGTCTT+TGG | + | chr1_4:55789345-55789364 | Msa0171160:intron | 35.0% | |
| !!! | GGCTTAAAAAGCTTTTTTGG+TGG | + | chr1_4:55789561-55789580 | Msa0171160:intron | 35.0% |
| CCTATTTAGCTAAACAGATC+AGG | - | chr1_4:55789594-55789613 | None:intergenic | 35.0% | |
| CCTGATCTGTTTAGCTAAAT+AGG | + | chr1_4:55789591-55789610 | Msa0171160:intron | 35.0% | |
| ATCAAAATAGGGGTGAGAAT+AGG | - | chr1_4:55789688-55789707 | None:intergenic | 35.0% | |
| ! | AGTTGGTTAGGGATTTCTTT+TGG | + | chr1_4:55789936-55789955 | Msa0171160:CDS | 35.0% |
| ! | GTTGGTTAGGGATTTCTTTT+GGG | + | chr1_4:55789937-55789956 | Msa0171160:CDS | 35.0% |
| !!! | TCTTTTGGGATGATGAGTTT+CGG | + | chr1_4:55789951-55789970 | Msa0171160:CDS | 35.0% |
| ! | TTCAACTATTCAAGAGTGTG+AGG | + | chr1_4:55790003-55790022 | Msa0171160:CDS | 35.0% |
| TCTCTATCACTGCAAAAGAA+GGG | - | chr1_4:55790170-55790189 | None:intergenic | 35.0% | |
| TTCTCTATCACTGCAAAAGA+AGG | - | chr1_4:55790171-55790190 | None:intergenic | 35.0% | |
| ATATCATAGGTCGTCGAATT+TGG | + | chr1_4:55790192-55790211 | Msa0171160:CDS | 35.0% | |
| TATCATAGGTCGTCGAATTT+GGG | + | chr1_4:55790193-55790212 | Msa0171160:CDS | 35.0% | |
| GCTTAGAGTTAACAATAGAC+GGG | - | chr1_4:55790275-55790294 | None:intergenic | 35.0% | |
| GGCTTAGAGTTAACAATAGA+CGG | - | chr1_4:55790276-55790295 | None:intergenic | 35.0% | |
| TCTATTGTTAACTCTAAGCC+TGG | + | chr1_4:55790276-55790295 | Msa0171160:intron | 35.0% | |
| GAAACACTCATCAAACTAAG+TGG | - | chr1_4:55790356-55790375 | None:intergenic | 35.0% | |
| CTCTATGAAATCAAAAGGAC+GGG | - | chr1_4:55790603-55790622 | None:intergenic | 35.0% | |
| CCTAGTTGGTTAATTATCCA+TGG | - | chr1_4:55790662-55790681 | None:intergenic | 35.0% | |
| CCATGGATAATTAACCAACT+AGG | + | chr1_4:55790659-55790678 | Msa0171160:intron | 35.0% | |
| !! | TGATGAAAAAGGTACCTAGT+TGG | - | chr1_4:55790676-55790695 | None:intergenic | 35.0% |
| !!! | ATGGTTTTTAGTAGCAGTGT+CGG | + | chr1_4:55790759-55790778 | Msa0171160:intron | 35.0% |
| AACATTGTACAGGTACACAT+TGG | - | chr1_4:55791167-55791186 | None:intergenic | 35.0% | |
| TTTGGCATACCAAAATCACA+AGG | - | chr1_4:55791342-55791361 | None:intergenic | 35.0% | |
| !! | TTGTGATTTTGGTATGCCAA+AGG | + | chr1_4:55791341-55791360 | Msa0171160:intron | 35.0% |
| AGATGTGTGTAAGTCTCTAA+TGG | - | chr1_4:55791410-55791429 | None:intergenic | 35.0% | |
| TTATTAGCACATGCTGACAA+TGG | - | chr1_4:55791627-55791646 | None:intergenic | 35.0% | |
| ! | ATACCTAAGCTTCTAGTTGT+TGG | + | chr1_4:55791765-55791784 | Msa0171160:CDS | 35.0% |
| !! | AAACCATTTCTCTAGAACCA+TGG | - | chr1_4:55791993-55792012 | None:intergenic | 35.0% |
| !! | TGATGATGCAGCTTTTTAAG+TGG | + | chr1_4:55792039-55792058 | Msa0171160:three_prime_UTR | 35.0% |
| ! | TTCTGGTGGTGAAAGTGAAA+AGG | + | chr1_4:55788684-55788703 | Msa0171160:CDS | 40.0% |
| ! | TCTGGTGGTGAAAGTGAAAA+GGG | + | chr1_4:55788685-55788704 | Msa0171160:CDS | 40.0% |
| GTGAAAGTGAAAAGGGATTG+AGG | + | chr1_4:55788692-55788711 | Msa0171160:CDS | 40.0% | |
| TTGGTTGAAGAGAAAGATGG+TGG | + | chr1_4:55788754-55788773 | Msa0171160:CDS | 40.0% | |
| CAAGCTTGGTAAGTCATGTT+TGG | - | chr1_4:55788814-55788833 | None:intergenic | 40.0% | |
| CAAACATGACTTACCAAGCT+TGG | + | chr1_4:55788812-55788831 | Msa0171160:CDS | 40.0% | |
| CCGAACACGCAAGTATAATT+AGG | - | chr1_4:55788865-55788884 | None:intergenic | 40.0% | |
| GTCAATCTAGGGATGAGAAT+TGG | + | chr1_4:55788996-55789015 | Msa0171160:intron | 40.0% | |
| GTGTCTGTTCACAGTTAAAC+CGG | - | chr1_4:55789129-55789148 | None:intergenic | 40.0% | |
| TGAACAGACACTGTCTACAT+TGG | + | chr1_4:55789138-55789157 | Msa0171160:intron | 40.0% | |
| GAACAGACACTGTCTACATT+GGG | + | chr1_4:55789139-55789158 | Msa0171160:intron | 40.0% | |
| GACGTGTTAGGTATCAGAAT+AGG | - | chr1_4:55789280-55789299 | None:intergenic | 40.0% | |
| ! | TTTTAGTAGGCAGGTCTAGT+AGG | + | chr1_4:55789540-55789559 | Msa0171160:intron | 40.0% |
| GCTTAGCTTAGGTTAAGCTT+AGG | - | chr1_4:55789640-55789659 | None:intergenic | 40.0% | |
| CTTAACCTAAGCTAAGCGAT+AGG | + | chr1_4:55789643-55789662 | Msa0171160:intron | 40.0% | |
| AGAAACCTATCGCTTAGCTT+AGG | - | chr1_4:55789651-55789670 | None:intergenic | 40.0% | |
| AGCGATAGGTTTCTGTCAAT+CGG | + | chr1_4:55789657-55789676 | Msa0171160:intron | 40.0% | |
| AAGAAATCCCTAACCAACTC+AGG | - | chr1_4:55789935-55789954 | None:intergenic | 40.0% | |
| GGTTTACAACTCACAACACA+AGG | - | chr1_4:55790079-55790098 | None:intergenic | 40.0% | |
| GTATTGCAAAGTATGCTGCA+TGG | + | chr1_4:55790740-55790759 | Msa0171160:intron | 40.0% | |
| !! | TGGCGTTTTTCAACTTCTTC+AGG | + | chr1_4:55790953-55790972 | Msa0171160:intron | 40.0% |
| !! | GGCGTTTTTCAACTTCTTCA+GGG | + | chr1_4:55790954-55790973 | Msa0171160:intron | 40.0% |
| ! | TCAAGCTTTTGTATTCGTGC+AGG | + | chr1_4:55791035-55791054 | Msa0171160:CDS | 40.0% |
| ATGAAGATATGGGCATACCT+TGG | + | chr1_4:55791502-55791521 | Msa0171160:CDS | 40.0% | |
| TGAAGATATGGGCATACCTT+GGG | + | chr1_4:55791503-55791522 | Msa0171160:CDS | 40.0% | |
| TCCAGGATCAAACTTCTTGA+CGG | - | chr1_4:55791568-55791587 | None:intergenic | 40.0% | |
| TTCTTATACGTACGTAGTCC+AGG | - | chr1_4:55791585-55791604 | None:intergenic | 40.0% | |
| CACGTAATCAGCAGTTACTT+TGG | - | chr1_4:55791664-55791683 | None:intergenic | 40.0% | |
| TTCAGTCTCCAACAAGTTAC+TGG | - | chr1_4:55791706-55791725 | None:intergenic | 40.0% | |
| CTTGTTGGAGACTGAAAATC+AGG | + | chr1_4:55791710-55791729 | Msa0171160:CDS | 40.0% | |
| TCTTCTGATGACAAACCGAT+CGG | + | chr1_4:55791735-55791754 | Msa0171160:CDS | 40.0% | |
| TATTCCAAATACAACCGCCT+TGG | - | chr1_4:55791835-55791854 | None:intergenic | 40.0% | |
| ! | TTGTATTTGGAATAGCCCGA+CGG | + | chr1_4:55791841-55791860 | Msa0171160:CDS | 40.0% |
| ! | TTCCGAATTTTCCAAACCGT+CGG | - | chr1_4:55791860-55791879 | None:intergenic | 40.0% |
| GTTTCTTGTCGAGGAAATAC+CGG | + | chr1_4:55791918-55791937 | Msa0171160:three_prime_UTR | 40.0% | |
| CTCTATTGCCACAACTTACT+TGG | - | chr1_4:55791947-55791966 | None:intergenic | 40.0% | |
| TTGTATCAAATTGGCAGCCA+TGG | + | chr1_4:55791973-55791992 | Msa0171160:three_prime_UTR | 40.0% | |
| ! | GGGATTGAGGAGTATAGTGA+CGG | + | chr1_4:55788705-55788724 | Msa0171160:CDS | 45.0% |
| ACCAGCTTGGATTCAGATGA+TGG | + | chr1_4:55788777-55788796 | Msa0171160:CDS | 45.0% | |
| TCCATCATCTGAATCCAAGC+TGG | - | chr1_4:55788781-55788800 | None:intergenic | 45.0% | |
| TGCGTGTTCGGTTATCTAGT+TGG | + | chr1_4:55788874-55788893 | Msa0171160:intron | 45.0% | |
| GTGCTTCACCAATTAGGTAG+TGG | + | chr1_4:55788905-55788924 | Msa0171160:intron | 45.0% | |
| ATCCTAAGTTGTTCTCGGCT+TGG | - | chr1_4:55789022-55789041 | None:intergenic | 45.0% | |
| TTATTTGAGCGGTTCAACCG+TGG | + | chr1_4:55789162-55789181 | Msa0171160:intron | 45.0% | |
| AGCTAAACAGATCAGGCTAC+TGG | - | chr1_4:55789587-55789606 | None:intergenic | 45.0% | |
| ACCACAGTATCGCAGTAGAA+CGG | + | chr1_4:55789892-55789911 | Msa0171160:CDS | 45.0% | |
| ! | ATTCAAGAGTGTGAGGTCAC+TGG | + | chr1_4:55790010-55790029 | Msa0171160:CDS | 45.0% |
| TGAGGTCACTGGAACAATGA+TGG | + | chr1_4:55790021-55790040 | Msa0171160:CDS | 45.0% | |
| ! | TGGAACAATGATGGTGCAGT+GGG | + | chr1_4:55790030-55790049 | Msa0171160:CDS | 45.0% |
| AATTAGTGATGTCGGCGTGT+TGG | + | chr1_4:55790847-55790866 | Msa0171160:intron | 45.0% | |
| TACCTTGTTCCTCCATACCA+AGG | + | chr1_4:55790979-55790998 | Msa0171160:CDS | 45.0% | |
| CATGGAACTGAAAGCTAGCA+TGG | + | chr1_4:55791245-55791264 | Msa0171160:intron | 45.0% | |
| ACACTTCACATGAAGTCAGC+TGG | - | chr1_4:55791470-55791489 | None:intergenic | 45.0% | |
| ! | TGCTGATTACGTGAGATCTC+TGG | + | chr1_4:55791671-55791690 | Msa0171160:CDS | 45.0% |
| ! | AGACTCGACCAGTAACTTGT+TGG | + | chr1_4:55791695-55791714 | Msa0171160:CDS | 45.0% |
| CTTCTGATGACAAACCGATC+GGG | + | chr1_4:55791736-55791755 | Msa0171160:CDS | 45.0% | |
| TTAGGTATGCTTCTCCCGAT+CGG | - | chr1_4:55791753-55791772 | None:intergenic | 45.0% | |
| ! | CCTAAGCTTCTAGTTGTTGG+CGG | + | chr1_4:55791768-55791787 | Msa0171160:CDS | 45.0% |
| ! | CTAAGCTTCTAGTTGTTGGC+GGG | + | chr1_4:55791769-55791788 | Msa0171160:CDS | 45.0% |
| ! | TAAGCTTCTAGTTGTTGGCG+GGG | + | chr1_4:55791770-55791789 | Msa0171160:CDS | 45.0% |
| ! | TCCGAATTTTCCAAACCGTC+GGG | - | chr1_4:55791859-55791878 | None:intergenic | 45.0% |
| ! | GACGGTTTGGAAAATTCGGA+AGG | + | chr1_4:55791859-55791878 | Msa0171160:CDS | 45.0% |
| GGTTTGGAAAATTCGGAAGG+AGG | + | chr1_4:55791862-55791881 | Msa0171160:CDS | 45.0% | |
| !! | CAGCCATGGTTCTAGAGAAA+TGG | + | chr1_4:55791987-55792006 | Msa0171160:three_prime_UTR | 45.0% |
| !! | TTTATTAATATTACTATTAT+TGG | - | chr1_4:55789506-55789525 | None:intergenic | 5.0% |
| !! | AGAAAGATGGTGGACCAGCT+TGG | + | chr1_4:55788764-55788783 | Msa0171160:CDS | 50.0% |
| TGACTTACCAAGCTTGGCGT+AGG | + | chr1_4:55788818-55788837 | Msa0171160:CDS | 50.0% | |
| GACTTACCAAGCTTGGCGTA+GGG | + | chr1_4:55788819-55788838 | Msa0171160:CDS | 50.0% | |
| !!! | GTTCAACCGTGGTTTTGTCC+AGG | + | chr1_4:55789173-55789192 | Msa0171160:intron | 50.0% |
| CTCGAACCTGGACAAAACCA+CGG | - | chr1_4:55789182-55789201 | None:intergenic | 50.0% | |
| !!! | TGGTTTTGTCCAGGTTCGAG+CGG | + | chr1_4:55789182-55789201 | Msa0171160:intron | 50.0% |
| ! | TGCTTTAAACCGCTCGAACC+TGG | - | chr1_4:55789194-55789213 | None:intergenic | 50.0% |
| CTATGACCTGGAGTTCTCAC+CGG | + | chr1_4:55789220-55789239 | Msa0171160:intron | 50.0% | |
| !! | AGTTCTCACCGGCTTGGTTT+CGG | + | chr1_4:55789231-55789250 | Msa0171160:intron | 50.0% |
| ATCCAAACCCGAAACCAAGC+CGG | - | chr1_4:55789242-55789261 | None:intergenic | 50.0% | |
| GTTCTACTGCGATACTGTGG+TGG | - | chr1_4:55789893-55789912 | None:intergenic | 50.0% | |
| ACCGTTCTACTGCGATACTG+TGG | - | chr1_4:55789896-55789915 | None:intergenic | 50.0% | |
| TGAAGATGCGAGTCCTGAGT+TGG | + | chr1_4:55789919-55789938 | Msa0171160:CDS | 50.0% | |
| !! | ATGCGAGTCCTGAGTTGGTT+AGG | + | chr1_4:55789924-55789943 | Msa0171160:CDS | 50.0% |
| !! | TGCGAGTCCTGAGTTGGTTA+GGG | + | chr1_4:55789925-55789944 | Msa0171160:CDS | 50.0% |
| ATGATGAGTTTCGGTCGAGG+TGG | + | chr1_4:55789960-55789979 | Msa0171160:CDS | 50.0% | |
| TGATGAGTTTCGGTCGAGGT+GGG | + | chr1_4:55789961-55789980 | Msa0171160:CDS | 50.0% | |
| ! | CTGGAACAATGATGGTGCAG+TGG | + | chr1_4:55790029-55790048 | Msa0171160:CDS | 50.0% |
| TGCCTTGGTATGGAGGAACA+AGG | - | chr1_4:55790984-55791003 | None:intergenic | 50.0% | |
| TTTGCTCTGCCTTGGTATGG+AGG | - | chr1_4:55790991-55791010 | None:intergenic | 50.0% | |
| ! | AGGTTTGCTCTGCCTTGGTA+TGG | - | chr1_4:55790994-55791013 | None:intergenic | 50.0% |
| ! | CGTTTAGGTTTGCTCTGCCT+TGG | - | chr1_4:55790999-55791018 | None:intergenic | 50.0% |
| CCAAGCTTAGCGATTTCCCA+AGG | - | chr1_4:55791522-55791541 | None:intergenic | 50.0% | |
| CCTTGGGAAATCGCTAAGCT+TGG | + | chr1_4:55791519-55791538 | Msa0171160:CDS | 50.0% | |
| GCTAAGCTTGGAGTTCGTCA+GGG | + | chr1_4:55791531-55791550 | Msa0171160:CDS | 50.0% | |
| TTGGAGTTCGTCAGGGTATG+TGG | + | chr1_4:55791538-55791557 | Msa0171160:CDS | 50.0% | |
| TGGAGTTCGTCAGGGTATGT+GGG | + | chr1_4:55791539-55791558 | Msa0171160:CDS | 50.0% | |
| GCCGTCAAGAAGTTTGATCC+TGG | + | chr1_4:55791564-55791583 | Msa0171160:CDS | 50.0% | |
| ACATGCTGACAATGGAACGC+CGG | - | chr1_4:55791619-55791638 | None:intergenic | 50.0% | |
| CCGCCAACAACTAGAAGCTT+AGG | - | chr1_4:55791771-55791790 | None:intergenic | 50.0% | |
| ! | TTGATCAAGGGTGCAGGCAA+GGG | - | chr1_4:55791802-55791821 | None:intergenic | 50.0% |
| TTGCCTGCACCCTTGATCAA+GGG | + | chr1_4:55791802-55791821 | Msa0171160:CDS | 50.0% | |
| GGTCACTAGCCCTTGATCAA+GGG | - | chr1_4:55791814-55791833 | None:intergenic | 50.0% | |
| TGGTCACTAGCCCTTGATCA+AGG | - | chr1_4:55791815-55791834 | None:intergenic | 50.0% | |
| ! | TGATCAAGGGCTAGTGACCA+AGG | + | chr1_4:55791815-55791834 | Msa0171160:CDS | 50.0% |
| GTGACCAAGGCGGTTGTATT+TGG | + | chr1_4:55791828-55791847 | Msa0171160:CDS | 50.0% | |
| ! | TTTGGAATAGCCCGACGGTT+TGG | + | chr1_4:55791846-55791865 | Msa0171160:CDS | 50.0% |
| ! | GCCCGACGGTTTGGAAAATT+CGG | + | chr1_4:55791855-55791874 | Msa0171160:CDS | 50.0% |
| TCTTGTCGAGGAAATACCGG+CGG | + | chr1_4:55791921-55791940 | Msa0171160:three_prime_UTR | 50.0% | |
| GGCCAAGCCGAGAACAACTT+AGG | + | chr1_4:55789017-55789036 | Msa0171160:intron | 55.0% | |
| !! | GTTCTCACCGGCTTGGTTTC+GGG | + | chr1_4:55789232-55789251 | Msa0171160:intron | 55.0% |
| GGGATGATGAGTTTCGGTCG+AGG | + | chr1_4:55789957-55789976 | Msa0171160:CDS | 55.0% | |
| CGCTAAGCTTGGAGTTCGTC+AGG | + | chr1_4:55791530-55791549 | Msa0171160:CDS | 55.0% | |
| GGAGTTCGTCAGGGTATGTG+GGG | + | chr1_4:55791540-55791559 | Msa0171160:CDS | 55.0% | |
| ! | CTTGATCAAGGGTGCAGGCA+AGG | - | chr1_4:55791803-55791822 | None:intergenic | 55.0% |
| CTTGCCTGCACCCTTGATCA+AGG | + | chr1_4:55791801-55791820 | Msa0171160:CDS | 55.0% | |
| ! | TAGCCCTTGATCAAGGGTGC+AGG | - | chr1_4:55791808-55791827 | None:intergenic | 55.0% |
| ! | TCAAGGGCTAGTGACCAAGG+CGG | + | chr1_4:55791818-55791837 | Msa0171160:CDS | 55.0% |
| CTTGGTCCCTACGCCAAGCT+TGG | - | chr1_4:55788828-55788847 | None:intergenic | 60.0% | |
| AGCTTGGCGTAGGGACCAAG+AGG | + | chr1_4:55788828-55788847 | Msa0171160:CDS | 60.0% | |
| ! | ACCTGGAGTTCTCACCGGCT+TGG | + | chr1_4:55789225-55789244 | Msa0171160:intron | 60.0% |
| ACCAAGCCGGTGAGAACTCC+AGG | - | chr1_4:55789229-55789248 | None:intergenic | 60.0% | |
| !! | CACCGGCTTGGTTTCGGGTT+TGG | + | chr1_4:55789237-55789256 | Msa0171160:intron | 60.0% |
| GATGGTGCAGTGGGTACGCA+AGG | + | chr1_4:55790039-55790058 | Msa0171160:CDS | 60.0% | |
| ! | AAGGGTGCAGGCAAGGGCAA+TGG | - | chr1_4:55791796-55791815 | None:intergenic | 60.0% |
| ACCGGCGGCCAAGTAAGTTG+TGG | + | chr1_4:55791936-55791955 | Msa0171160:three_prime_UTR | 60.0% | |
| GCCACAACTTACTTGGCCGC+CGG | - | chr1_4:55791940-55791959 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55788679 | 55792227 | 55788679 | ID=Msa0171160;Name=Msa0171160 |
| chr1_4 | mRNA | 55788679 | 55792227 | 55788679 | ID=Msa0171160-mRNA-1;Parent=Msa0171160;Name=Msa0171160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.8|1|1|1|5|337|318 |
| chr1_4 | exon | 55788679 | 55788849 | 55788679 | ID=Msa0171160-mRNA-1:exon:16723;Parent=Msa0171160-mRNA-1 |
| chr1_4 | exon | 55789884 | 55790060 | 55789884 | ID=Msa0171160-mRNA-1:exon:16724;Parent=Msa0171160-mRNA-1 |
| chr1_4 | exon | 55790164 | 55790247 | 55790164 | ID=Msa0171160-mRNA-1:exon:16725;Parent=Msa0171160-mRNA-1 |
| chr1_4 | exon | 55790975 | 55791056 | 55790975 | ID=Msa0171160-mRNA-1:exon:16726;Parent=Msa0171160-mRNA-1 |
| chr1_4 | exon | 55791448 | 55792227 | 55791448 | ID=Msa0171160-mRNA-1:exon:16727;Parent=Msa0171160-mRNA-1 |
| chr1_4 | CDS | 55788679 | 55788849 | 55788679 | ID=Msa0171160-mRNA-1:cds;Parent=Msa0171160-mRNA-1 |
| chr1_4 | CDS | 55789884 | 55790060 | 55789884 | ID=Msa0171160-mRNA-1:cds;Parent=Msa0171160-mRNA-1 |
| chr1_4 | CDS | 55790164 | 55790247 | 55790164 | ID=Msa0171160-mRNA-1:cds;Parent=Msa0171160-mRNA-1 |
| chr1_4 | CDS | 55790975 | 55791056 | 55790975 | ID=Msa0171160-mRNA-1:cds;Parent=Msa0171160-mRNA-1 |
| chr1_4 | CDS | 55791448 | 55791890 | 55791448 | ID=Msa0171160-mRNA-1:cds;Parent=Msa0171160-mRNA-1 |
| chr1_4 | three_prime_UTR | 55791891 | 55792227 | 55791891 | ID=Msa0171160-mRNA-1:three_prime_utr;Parent=Msa0171160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
