Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031480 | sp|Q9ZT87|PEL1_ARATH | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031480 | Msa0078750 | 0.893849 | 4.283011e-75 | -8.615850e-47 |
| Msa0031480 | Msa0126470 | 0.902487 | 9.224682e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031480 | MtrunA17_Chr1g0189481 | 99.208 | 379 | 3 | 0 | 1 | 379 | 1 | 379 | 0.0 | 776 |
| Msa0031480 | MtrunA17_Chr7g0265321 | 43.878 | 392 | 203 | 5 | 1 | 378 | 1 | 389 | 7.73e-102 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031480 | AT4G27650.2 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0031480 | AT4G27650.1 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0031480 | AT4G27650.3 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0031480 | AT3G58390.1 | 70.500 | 400 | 92 | 3 | 1 | 379 | 1 | 395 | 0.0 | 578 |
Find 115 sgRNAs with CRISPR-Local
Find 435 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATTCAGTTAAGGATTC+TGG | 0.172762 | 1_1:-58214991 | Msa0031480:CDS |
| GTGTATAACGAACCCGGTTT+AGG | 0.213385 | 1_1:+58221252 | None:intergenic |
| TTAGCCCATATCCTCCTTAT+TGG | 0.278692 | 1_1:-58219362 | Msa0031480:CDS |
| ATATCCTCCTTATTGGTAAA+AGG | 0.288893 | 1_1:-58219355 | Msa0031480:intron |
| TCGTTATACACCGATTCTTT+TGG | 0.301040 | 1_1:-58221240 | Msa0031480:five_prime_UTR |
| TTTATCATGTTCATGACATT+TGG | 0.301926 | 1_1:+58217157 | None:intergenic |
| GTAACTCAAGTTCTAAAGTA+TGG | 0.306803 | 1_1:+58219992 | None:intergenic |
| TTTGCCTTTCGTAGGATGTC+TGG | 0.312960 | 1_1:-58219759 | Msa0031480:intron |
| TGTATAACGAACCCGGTTTA+GGG | 0.326317 | 1_1:+58221253 | None:intergenic |
| CACTAGCCGCCTCCCTAAAC+CGG | 0.330467 | 1_1:-58221265 | None:intergenic |
| AATTGAACCTTAACGCTTCC+AGG | 0.331018 | 1_1:+58221050 | None:intergenic |
| GCATAGTTTAAAAGAGGTTC+TGG | 0.333349 | 1_1:-58217185 | Msa0031480:CDS |
| TGAACGTGTTAAACTCAAAT+TGG | 0.335052 | 1_1:-58220834 | Msa0031480:CDS |
| TGTCTGGGATTCTTATGCTT+TGG | 0.353497 | 1_1:-58219743 | Msa0031480:CDS |
| GATTCATCACGTGCTTGTTA+TGG | 0.355531 | 1_1:-58215686 | Msa0031480:CDS |
| TTTGCACAGCTAGGCGTTCA+TGG | 0.362499 | 1_1:+58215642 | None:intergenic |
| CAATCATGGCCGTTACTATC+AGG | 0.364180 | 1_1:-58220895 | Msa0031480:CDS |
| ATCTCCATGTCTTCGAGATC+AGG | 0.375283 | 1_1:+58214627 | None:intergenic |
| CTGGGATTCTTATGCTTTGG+AGG | 0.376577 | 1_1:-58219740 | Msa0031480:CDS |
| TAACTTGGTCAATTCAGTTA+AGG | 0.403397 | 1_1:-58214998 | Msa0031480:CDS |
| TCAAAATTCCCATCACTACT+TGG | 0.407590 | 1_1:-58214330 | Msa0031480:three_prime_UTR |
| ATGCCGAGTATCTATGATAA+GGG | 0.424992 | 1_1:-58214397 | Msa0031480:three_prime_UTR |
| GGGGTGGGTACTTGTGCTCC+TGG | 0.431835 | 1_1:-58214377 | Msa0031480:three_prime_UTR |
| AAGCATGGGCCTGCTATTGC+TGG | 0.435283 | 1_1:-58219053 | Msa0031480:CDS |
| TCTGGACCAGCCGGTTCAAC+CGG | 0.435915 | 1_1:+58221186 | None:intergenic |
| GACTTTGTGCGCAATGGACC+TGG | 0.437274 | 1_1:-58221068 | Msa0031480:CDS |
| GAGGTACTCCAGCAGGCCTC+TGG | 0.441982 | 1_1:-58219721 | Msa0031480:intron |
| AGTGTCAAATCCGGTTGAAC+CGG | 0.445181 | 1_1:-58221196 | Msa0031480:five_prime_UTR |
| CAATGGACCTGGAAGCGTTA+AGG | 0.450341 | 1_1:-58221057 | Msa0031480:intron |
| TGCTTTGGAGGTACTCCAGC+AGG | 0.452022 | 1_1:-58219728 | Msa0031480:CDS |
| CAGTGGATTCAGATGATCTA+TGG | 0.452319 | 1_1:-58220949 | Msa0031480:CDS |
| TTGCCTTTCGTAGGATGTCT+GGG | 0.452424 | 1_1:-58219758 | Msa0031480:intron |
| GTGGTATTGCTGCAATTCTT+CGG | 0.459436 | 1_1:-58214659 | Msa0031480:CDS |
| CGAAAAGACTTTGTGCGCAA+TGG | 0.462477 | 1_1:-58221074 | Msa0031480:CDS |
| TTTACCAATAAGGAGGATAT+GGG | 0.463278 | 1_1:+58219358 | None:intergenic |
| ATTCGAAGAGAAAACTGATC+TGG | 0.466395 | 1_1:+58221168 | None:intergenic |
| TTTGGACTTCCGTGCCCGTC+CGG | 0.468900 | 1_1:-58221222 | Msa0031480:five_prime_UTR |
| GAACATGATAAAAGATACTA+AGG | 0.469528 | 1_1:-58217146 | Msa0031480:CDS |
| ATAACATACCAGAGGCCTGC+TGG | 0.479042 | 1_1:+58219713 | None:intergenic |
| GATGCCGAGTATCTATGATA+AGG | 0.485861 | 1_1:-58214398 | Msa0031480:three_prime_UTR |
| CTGTAGGCATAGTTTAAAAG+AGG | 0.487997 | 1_1:-58217191 | Msa0031480:intron |
| AACTGCCCCTCAGGACTCCT+AGG | 0.489903 | 1_1:-58214517 | Msa0031480:three_prime_UTR |
| ATTACCTTCCTGAGCACAAA+AGG | 0.492792 | 1_1:+58219964 | None:intergenic |
| GTCCGGACCAGTGTCAAATC+CGG | 0.496845 | 1_1:-58221205 | Msa0031480:five_prime_UTR |
| CTTCCCGCGAACACGCAAAA+CGG | 0.498620 | 1_1:+58220130 | None:intergenic |
| TTGCACAGCTAGGCGTTCAT+GGG | 0.499013 | 1_1:+58215643 | None:intergenic |
| TGATGTTACAACTGCCCCTC+AGG | 0.500770 | 1_1:-58214526 | Msa0031480:three_prime_UTR |
| TCGAAGACATGGAGATGTAA+TGG | 0.501027 | 1_1:-58214620 | Msa0031480:exon |
| GCTAGATCAGCACTTGCAGC+AGG | 0.502678 | 1_1:+58219407 | None:intergenic |
| GCTTCAATTCCTCGTAAGCA+TGG | 0.505004 | 1_1:-58219068 | Msa0031480:CDS |
| GTATATAATTTGATAGCTCC+TGG | 0.505012 | 1_1:-58220923 | Msa0031480:CDS |
| GTTCTTAGAGAAGCAGCTAA+TGG | 0.507930 | 1_1:-58220869 | Msa0031480:CDS |
| TCAAATCCGGTTGAACCGGC+TGG | 0.509351 | 1_1:-58221192 | Msa0031480:five_prime_UTR |
| AACCGGATTTGACACTGGTC+CGG | 0.509881 | 1_1:+58221203 | None:intergenic |
| CTCTCGTAACCAGCAATAGC+AGG | 0.515882 | 1_1:+58219044 | None:intergenic |
| GGGTGGGTACTTGTGCTCCT+GGG | 0.516862 | 1_1:-58214376 | Msa0031480:three_prime_UTR |
| ATTCTCACTCACACGACCTC+AGG | 0.527617 | 1_1:-58217684 | Msa0031480:CDS |
| ACTCAGCATCCCACTTGCCT+AGG | 0.534636 | 1_1:+58214500 | None:intergenic |
| TCTTCAGGTTCGAATTCTGA+AGG | 0.535228 | 1_1:-58217020 | Msa0031480:intron |
| TTGGTCAAGCAAGTCGGTGT+TGG | 0.535309 | 1_1:-58214591 | Msa0031480:three_prime_UTR |
| TCTCCATGTCTTCGAGATCA+GGG | 0.535323 | 1_1:+58214628 | None:intergenic |
| GAGTGCTAACCAAGTAGTGA+TGG | 0.536610 | 1_1:+58214321 | None:intergenic |
| TGTGCTGTAATTGCAAGTCC+TGG | 0.539910 | 1_1:-58217980 | Msa0031480:CDS |
| GCACGGAAGTCCAAAAGAAT+CGG | 0.540175 | 1_1:+58221230 | None:intergenic |
| AGCTCCTGGTGATTCAATCA+TGG | 0.552812 | 1_1:-58220909 | Msa0031480:CDS |
| GTATGACTGTTACTCGTTCG+CGG | 0.553104 | 1_1:-58219097 | Msa0031480:CDS |
| AGATACTAAGGCAGCACAAG+AGG | 0.557963 | 1_1:-58217134 | Msa0031480:intron |
| CACCCCTTATCATAGATACT+CGG | 0.570533 | 1_1:+58214394 | None:intergenic |
| CGAGTATCTATGATAAGGGG+TGG | 0.571946 | 1_1:-58214393 | Msa0031480:three_prime_UTR |
| CCACTTGCCTAGGAGTCCTG+AGG | 0.572246 | 1_1:+58214510 | None:intergenic |
| ACGAACCCGGTTTAGGGAGG+CGG | 0.572635 | 1_1:+58221259 | None:intergenic |
| GATTTGACACTGGTCCGGAC+GGG | 0.574764 | 1_1:+58221208 | None:intergenic |
| CATGCATGGATGAAAATACA+TGG | 0.575010 | 1_1:+58214959 | None:intergenic |
| GGATTTGACACTGGTCCGGA+CGG | 0.577442 | 1_1:+58221207 | None:intergenic |
| ACTAGCCGCCTCCCTAAACC+GGG | 0.578516 | 1_1:-58221264 | None:intergenic |
| GACACTGGTCCGGACGGGCA+CGG | 0.579581 | 1_1:+58221213 | None:intergenic |
| CTCAGGACTCCTAGGCAAGT+GGG | 0.583005 | 1_1:-58214509 | Msa0031480:three_prime_UTR |
| CTTCAATTCCTCGTAAGCAT+GGG | 0.583987 | 1_1:-58219067 | Msa0031480:CDS |
| TCTCCCTGATCTCGAAGACA+TGG | 0.585381 | 1_1:-58214631 | Msa0031480:CDS |
| GAAAACTGATCTGGACCAGC+CGG | 0.592827 | 1_1:+58221177 | None:intergenic |
| CATAGATCATCTGAATCCAC+TGG | 0.593444 | 1_1:+58220950 | None:intergenic |
| TTATGGAACAAAACATGTTG+AGG | 0.595098 | 1_1:-58215669 | Msa0031480:CDS |
| TTTGCCAGATATAATGAACC+AGG | 0.595292 | 1_1:-58214478 | Msa0031480:three_prime_UTR |
| CCTCAGGACTCCTAGGCAAG+TGG | 0.595778 | 1_1:-58214510 | Msa0031480:three_prime_UTR |
| TGAGAAGCGTTTGCACAGCT+AGG | 0.600897 | 1_1:+58215633 | None:intergenic |
| AAGAACTTTCCTGATAGTAA+CGG | 0.602859 | 1_1:+58220886 | None:intergenic |
| GGTTCAACCGGATTTGACAC+TGG | 0.603643 | 1_1:+58221198 | None:intergenic |
| CTTAGAGAAGCAGCTAATGG+TGG | 0.604388 | 1_1:-58220866 | Msa0031480:CDS |
| TGATACACAGATGGTGCCAG+TGG | 0.604532 | 1_1:-58220966 | Msa0031480:intron |
| ACAGAACTAGAGCAGATAAG+TGG | 0.610661 | 1_1:-58214678 | Msa0031480:intron |
| CACTTGCCTAGGAGTCCTGA+GGG | 0.611537 | 1_1:+58214511 | None:intergenic |
| TCTAGAGAATGAACATGTCA+AGG | 0.615714 | 1_1:-58220102 | Msa0031480:intron |
| AATTCAGTTAAGGATTCTGG+AGG | 0.623215 | 1_1:-58214988 | Msa0031480:CDS |
| AGTGCTAACCAAGTAGTGAT+GGG | 0.627817 | 1_1:+58214322 | None:intergenic |
| TGCAAGTGCTGATCTAGCTG+TGG | 0.630199 | 1_1:-58219402 | Msa0031480:CDS |
| CTTTAGAACTTGAGTTACAG+CGG | 0.635772 | 1_1:-58219987 | Msa0031480:CDS |
| ATGTCTTCGAGATCAGGGAG+AGG | 0.648204 | 1_1:+58214633 | None:intergenic |
| GCTGTGGTGTTGATGCAAGA+AGG | 0.651031 | 1_1:-58219386 | Msa0031480:CDS |
| ACGGCCATGATTGAATCACC+AGG | 0.658374 | 1_1:+58220905 | None:intergenic |
| ATAGCAGGCCCATGCTTACG+AGG | 0.660640 | 1_1:+58219059 | None:intergenic |
| GGTGTGGATTATGACAAAGA+AGG | 0.663103 | 1_1:-58220155 | Msa0031480:CDS |
| GAGTATCTATGATAAGGGGT+GGG | 0.663187 | 1_1:-58214392 | Msa0031480:three_prime_UTR |
| GGAATGCAGATATACCTACC+AGG | 0.665150 | 1_1:-58215032 | Msa0031480:CDS |
| TGCCAGATATAATGAACCAG+GGG | 0.666895 | 1_1:-58214476 | Msa0031480:three_prime_UTR |
| ACAATGTTGGTCAAGCAAGT+CGG | 0.667790 | 1_1:-58214597 | Msa0031480:three_prime_UTR |
| TGCCGAGTATCTATGATAAG+GGG | 0.669668 | 1_1:-58214396 | Msa0031480:three_prime_UTR |
| GAATCGGTGTATAACGAACC+CGG | 0.674412 | 1_1:+58221246 | None:intergenic |
| ATAACGAACCCGGTTTAGGG+AGG | 0.678907 | 1_1:+58221256 | None:intergenic |
| TTGCCAGATATAATGAACCA+GGG | 0.679888 | 1_1:-58214477 | Msa0031480:three_prime_UTR |
| GGAGATGTAATGGACAATGT+TGG | 0.686186 | 1_1:-58214610 | Msa0031480:exon |
| ACGTTCTCCAGAGACATGCA+TGG | 0.686516 | 1_1:+58214945 | None:intergenic |
| GCCAGATATAATGAACCAGG+GGG | 0.717822 | 1_1:-58214475 | Msa0031480:three_prime_UTR |
| GCAACCGTACTTGTATCCTG+AGG | 0.720068 | 1_1:+58217668 | None:intergenic |
| ACTTGCCTAGGAGTCCTGAG+GGG | 0.721508 | 1_1:+58214512 | None:intergenic |
| GAGACATATAGATTTCAACG+TGG | 0.809146 | 1_1:-58218008 | Msa0031480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATTATGTAATAATAAT+AGG | - | chr1_1:58215279-58215298 | Msa0031480:intron | 10.0% |
| !!! | TTTATTTTTTATTTTTCTTC+AGG | - | chr1_1:58218469-58218488 | Msa0031480:intron | 10.0% |
| !!! | TAGAAATTTTGTTTAAAAAT+TGG | - | chr1_1:58219081-58219100 | Msa0031480:CDS | 10.0% |
| !!! | TTTTTATTTTTTAAAAAGCA+GGG | + | chr1_1:58220177-58220196 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTTAAAAAGC+AGG | + | chr1_1:58220178-58220197 | None:intergenic | 10.0% |
| !!! | ATTGTGTGTTTTTTTTTATT+AGG | - | chr1_1:58214725-58214744 | Msa0031480:intron | 15.0% |
| !! | ATAAATAATTAAGAGTTGAA+TGG | + | chr1_1:58215218-58215237 | None:intergenic | 15.0% |
| !! | TTCATTTAGATATATCATTT+AGG | - | chr1_1:58215646-58215665 | Msa0031480:CDS | 15.0% |
| !!! | TTAGAACTATATCAAAATTT+TGG | - | chr1_1:58215669-58215688 | Msa0031480:CDS | 15.0% |
| !!! | TAGAACTATATCAAAATTTT+GGG | - | chr1_1:58215670-58215689 | Msa0031480:CDS | 15.0% |
| !! | TTATAAAATTGACAGTTTAT+CGG | + | chr1_1:58215824-58215843 | None:intergenic | 15.0% |
| !!! | TAAACTGTCAATTTTATAAT+AGG | - | chr1_1:58215825-58215844 | Msa0031480:intron | 15.0% |
| !! | TATATATTCCATATAGAAAA+TGG | - | chr1_1:58216677-58216696 | Msa0031480:intron | 15.0% |
| !! | ATATATTCCATATAGAAAAT+GGG | - | chr1_1:58216678-58216697 | Msa0031480:intron | 15.0% |
| !!! | AATTTCTTTTTCAATATGAA+GGG | - | chr1_1:58216718-58216737 | Msa0031480:intron | 15.0% |
| !!! | TTATTATATTGATGACTTTT+AGG | - | chr1_1:58217113-58217132 | Msa0031480:intron | 15.0% |
| !! | TTAAAATACTGGAAAATTAT+GGG | + | chr1_1:58218071-58218090 | None:intergenic | 15.0% |
| !! | AACAACAAAACATAATTTAA+TGG | + | chr1_1:58218134-58218153 | None:intergenic | 15.0% |
| !! | TTCACTTAAAATCTTATATA+TGG | + | chr1_1:58218166-58218185 | None:intergenic | 15.0% |
| !! | AATATGAAAATGAAATATCA+TGG | + | chr1_1:58218827-58218846 | None:intergenic | 15.0% |
| !!! | ACAAATTTTGAAGTTAATAT+TGG | + | chr1_1:58220270-58220289 | None:intergenic | 15.0% |
| !! | TTCATATTCATTAATTGATG+TGG | - | chr1_1:58214962-58214981 | Msa0031480:CDS | 20.0% |
| !! | TCTTTAAGTATAGAGAATAT+AGG | - | chr1_1:58215045-58215064 | Msa0031480:intron | 20.0% |
| !!! | GTAAAACTATTTTACACTAA+CGG | + | chr1_1:58215078-58215097 | None:intergenic | 20.0% |
| !!! | AGTTTTGTCTTATCTTTTTT+TGG | - | chr1_1:58215320-58215339 | Msa0031480:intron | 20.0% |
| !! | ATCCATTTAAGTAAGAAAAA+TGG | - | chr1_1:58215926-58215945 | Msa0031480:intron | 20.0% |
| !! | TGGTGTAAATAATGTTAATA+TGG | - | chr1_1:58216044-58216063 | Msa0031480:intron | 20.0% |
| !! | ATTAGTAGCTTTCATTAAAT+AGG | - | chr1_1:58216173-58216192 | Msa0031480:intron | 20.0% |
| !! | AGAACAAGTAATTAATATCA+CGG | + | chr1_1:58216304-58216323 | None:intergenic | 20.0% |
| !!! | GAATTTCTTTTTCAATATGA+AGG | - | chr1_1:58216717-58216736 | Msa0031480:intron | 20.0% |
| !!! | TTTTAAACTCATAGAAAAGT+AGG | + | chr1_1:58217893-58217912 | None:intergenic | 20.0% |
| !! | AATTATAGTCAATTAGATGT+AGG | - | chr1_1:58217950-58217969 | Msa0031480:intron | 20.0% |
| !! | GTTAAAATACTGGAAAATTA+TGG | + | chr1_1:58218072-58218091 | None:intergenic | 20.0% |
| !! | ATGAATACAGATATAAGTAT+GGG | - | chr1_1:58219020-58219039 | Msa0031480:intron | 20.0% |
| !!! | AAGATTTTTATTTTCAGCTT+AGG | - | chr1_1:58219529-58219548 | Msa0031480:intron | 20.0% |
| !! | CTAACATATATCAAGTATTT+GGG | - | chr1_1:58219572-58219591 | Msa0031480:intron | 20.0% |
| !!! | TATTTTCATGCATACAATAA+AGG | + | chr1_1:58219648-58219667 | None:intergenic | 20.0% |
| !!! | AATCCTGATTGAATATTTTT+CGG | - | chr1_1:58219786-58219805 | Msa0031480:intron | 20.0% |
| !! | AATAATGGTAAACAAGTATT+AGG | - | chr1_1:58220655-58220674 | Msa0031480:intron | 20.0% |
| !!! | GCAAAATTTGTTGTTAATGT+TGG | - | chr1_1:58214510-58214529 | Msa0031480:three_prime_UTR | 25.0% |
| !!! | CACCATTTTTCTTACTTAAA+TGG | + | chr1_1:58215931-58215950 | None:intergenic | 25.0% |
| ! | CATTTAAGTAAGAAAAATGG+TGG | - | chr1_1:58215929-58215948 | Msa0031480:intron | 25.0% |
| !! | ACTAATACCTTTTACCAATA+AGG | + | chr1_1:58216159-58216178 | None:intergenic | 25.0% |
| !!! | TTAAGAAGATTTTTGACTCT+TGG | - | chr1_1:58216209-58216228 | Msa0031480:intron | 25.0% |
| !!! | TAAGAAGATTTTTGACTCTT+GGG | - | chr1_1:58216210-58216229 | Msa0031480:intron | 25.0% |
| ! | GAACAAGTAATTAATATCAC+GGG | + | chr1_1:58216303-58216322 | None:intergenic | 25.0% |
| ! | GATGAATAAAGTCATTGAAA+TGG | + | chr1_1:58216367-58216386 | None:intergenic | 25.0% |
| ! | TATATACCATTGTAAAAGAG+AGG | + | chr1_1:58216503-58216522 | None:intergenic | 25.0% |
| !!! | TTATATTGATGACTTTTAGG+AGG | - | chr1_1:58217116-58217135 | Msa0031480:intron | 25.0% |
| !!! | TATATTGATGACTTTTAGGA+GGG | - | chr1_1:58217117-58217136 | Msa0031480:intron | 25.0% |
| ! | AACAATACACCAAAAATGAT+AGG | - | chr1_1:58217245-58217264 | Msa0031480:intron | 25.0% |
| ! | TTGTCCAACAAAATTAAGAA+AGG | - | chr1_1:58217425-58217444 | Msa0031480:intron | 25.0% |
| ! | TGTCCAACAAAATTAAGAAA+GGG | - | chr1_1:58217426-58217445 | Msa0031480:intron | 25.0% |
| !! | TTACATACTTTTGTAAATCC+AGG | + | chr1_1:58217545-58217564 | None:intergenic | 25.0% |
| ! | AGAATCAAGTGTTAAAATAC+TGG | + | chr1_1:58218082-58218101 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGCATTTTAAGGA+AGG | + | chr1_1:58218203-58218222 | None:intergenic | 25.0% |
| !!! | GACATTTTTTCTGCATTTTA+AGG | + | chr1_1:58218207-58218226 | None:intergenic | 25.0% |
| ! | AAGAAATTCTAATGTGAATG+AGG | + | chr1_1:58218291-58218310 | None:intergenic | 25.0% |
| ! | CATTAGAATTTCTTATCTGT+AGG | - | chr1_1:58218297-58218316 | Msa0031480:intron | 25.0% |
| ! | TTTATCATGTTCATGACATT+TGG | + | chr1_1:58218350-58218369 | None:intergenic | 25.0% |
| ! | GAACATGATAAAAGATACTA+AGG | - | chr1_1:58218358-58218377 | Msa0031480:intron | 25.0% |
| !!! | GGCAACAGAAATTTTAAAAA+GGG | + | chr1_1:58218598-58218617 | None:intergenic | 25.0% |
| !!! | TGGCAACAGAAATTTTAAAA+AGG | + | chr1_1:58218599-58218618 | None:intergenic | 25.0% |
| ! | CTAAGTTTAACTGAATCAAT+AGG | - | chr1_1:58218661-58218680 | Msa0031480:intron | 25.0% |
| ! | AAAGATCAATACTCTTCTTT+CGG | + | chr1_1:58218726-58218745 | None:intergenic | 25.0% |
| ! | TTTAGATGCTTGTATTATTG+AGG | - | chr1_1:58218779-58218798 | Msa0031480:intron | 25.0% |
| !!! | TTTTCTTTGATAGAAAGCAT+CGG | + | chr1_1:58218890-58218909 | None:intergenic | 25.0% |
| ! | CATGAATACAGATATAAGTA+TGG | - | chr1_1:58219019-58219038 | Msa0031480:intron | 25.0% |
| ! | TTTCTATTGCTGTATAACAA+TGG | + | chr1_1:58219067-58219086 | None:intergenic | 25.0% |
| !! | AACTGAATTCATAACAGTTT+TGG | - | chr1_1:58219278-58219297 | Msa0031480:intron | 25.0% |
| ! | AGTTAGTTACAAAATCTTAG+AGG | + | chr1_1:58219353-58219372 | None:intergenic | 25.0% |
| ! | TATAAGAAAAACGCTATAGA+TGG | - | chr1_1:58219472-58219491 | Msa0031480:intron | 25.0% |
| ! | GCTAACATATATCAAGTATT+TGG | - | chr1_1:58219571-58219590 | Msa0031480:intron | 25.0% |
| !! | ATCCTGATTGAATATTTTTC+GGG | - | chr1_1:58219787-58219806 | Msa0031480:intron | 25.0% |
| ! | AGAGTATGTTGAAAATGAAA+AGG | - | chr1_1:58220090-58220109 | Msa0031480:intron | 25.0% |
| ! | GAGTATGTTGAAAATGAAAA+GGG | - | chr1_1:58220091-58220110 | Msa0031480:intron | 25.0% |
| !! | TTTTATCTAAACCATTTCCA+AGG | + | chr1_1:58220227-58220246 | None:intergenic | 25.0% |
| ! | ATCTAGTTATCATGCTATAA+TGG | + | chr1_1:58220320-58220339 | None:intergenic | 25.0% |
| ! | TTATCAATCACAACATCAAA+AGG | + | chr1_1:58220416-58220435 | None:intergenic | 25.0% |
| !! | TAAATATATCTGCATGCTTT+TGG | - | chr1_1:58220444-58220463 | Msa0031480:intron | 25.0% |
| ! | TACTTGTTTACCATTATTTG+CGG | + | chr1_1:58220653-58220672 | None:intergenic | 25.0% |
| ! | TCTGTTCATCAATGTAAAAT+TGG | + | chr1_1:58220811-58220830 | None:intergenic | 25.0% |
| TGAAGAATTGTGTGGAAATT+GGG | + | chr1_1:58214487-58214506 | None:intergenic | 30.0% | |
| TTGAAGAATTGTGTGGAAAT+TGG | + | chr1_1:58214488-58214507 | None:intergenic | 30.0% | |
| TTTGCAATTGAAGAATTGTG+TGG | + | chr1_1:58214495-58214514 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTGATACACAGA+TGG | - | chr1_1:58214529-58214548 | Msa0031480:three_prime_UTR | 30.0% |
| ! | GTATATAATTTGATAGCTCC+TGG | - | chr1_1:58214581-58214600 | Msa0031480:three_prime_UTR | 30.0% |
| AAGAACTTTCCTGATAGTAA+CGG | + | chr1_1:58214621-58214640 | None:intergenic | 30.0% | |
| TGAACGTGTTAAACTCAAAT+TGG | - | chr1_1:58214670-58214689 | Msa0031480:CDS | 30.0% | |
| GTCGTATTCATTAATTGATG+TGG | + | chr1_1:58214930-58214949 | None:intergenic | 30.0% | |
| TCCAATAAGAATCAAGTATG+TGG | - | chr1_1:58215105-58215124 | Msa0031480:intron | 30.0% | |
| ACCACATACTTGATTCTTAT+TGG | + | chr1_1:58215109-58215128 | None:intergenic | 30.0% | |
| !! | ATGTGGTAGTGGTTATAAAT+TGG | - | chr1_1:58215122-58215141 | Msa0031480:intron | 30.0% |
| !! | TGTGGTAGTGGTTATAAATT+GGG | - | chr1_1:58215123-58215142 | Msa0031480:intron | 30.0% |
| GGTTATAAATTGGGATTATG+TGG | - | chr1_1:58215132-58215151 | Msa0031480:intron | 30.0% | |
| !! | GCGATTTGATGAGTTTTAAT+TGG | - | chr1_1:58215154-58215173 | Msa0031480:intron | 30.0% |
| TGAATGGTTATACATTGTCT+GGG | + | chr1_1:58215202-58215221 | None:intergenic | 30.0% | |
| TTGAATGGTTATACATTGTC+TGG | + | chr1_1:58215203-58215222 | None:intergenic | 30.0% | |
| ! | CCTACAAAGTTTTACATTGT+CGG | - | chr1_1:58215239-58215258 | Msa0031480:intron | 30.0% |
| !!! | TCTTATCTTTTTTTGGTTCC+AGG | - | chr1_1:58215327-58215346 | Msa0031480:intron | 30.0% |
| !!! | CTTATCTTTTTTTGGTTCCA+GGG | - | chr1_1:58215328-58215347 | Msa0031480:intron | 30.0% |
| !! | GTAACTCAAGTTCTAAAGTA+TGG | + | chr1_1:58215515-58215534 | None:intergenic | 30.0% |
| ! | AGTAGTTCTATGAATTCACA+TGG | + | chr1_1:58215879-58215898 | None:intergenic | 30.0% |
| TTTCTTACTTAAATGGATGC+AGG | + | chr1_1:58215924-58215943 | None:intergenic | 30.0% | |
| AGGATCTGCAAAATAAACAA+AGG | + | chr1_1:58216080-58216099 | None:intergenic | 30.0% | |
| TTTACCAATAAGGAGGATAT+GGG | + | chr1_1:58216149-58216168 | None:intergenic | 30.0% | |
| ! | TTTTACCAATAAGGAGGATA+TGG | + | chr1_1:58216150-58216169 | None:intergenic | 30.0% |
| ATATCCTCCTTATTGGTAAA+AGG | - | chr1_1:58216149-58216168 | Msa0031480:intron | 30.0% | |
| ! | AATACCTTTTACCAATAAGG+AGG | + | chr1_1:58216156-58216175 | None:intergenic | 30.0% |
| TAATTAATATCACGGGTTTG+TGG | + | chr1_1:58216296-58216315 | None:intergenic | 30.0% | |
| CTTATTCAAAGCCTACAAAA+AGG | + | chr1_1:58216579-58216598 | None:intergenic | 30.0% | |
| ! | TCACAAACCCATTTTCTATA+TGG | + | chr1_1:58216688-58216707 | None:intergenic | 30.0% |
| AACCAAGTTATTCAGATTTG+AGG | + | chr1_1:58216797-58216816 | None:intergenic | 30.0% | |
| ATCAGCTTATGGTGATTTAA+GGG | + | chr1_1:58216895-58216914 | None:intergenic | 30.0% | |
| AATCAGCTTATGGTGATTTA+AGG | + | chr1_1:58216896-58216915 | None:intergenic | 30.0% | |
| TAAATCACCATAAGCTGATT+TGG | - | chr1_1:58216896-58216915 | Msa0031480:intron | 30.0% | |
| ! | AAATCACCATAAGCTGATTT+GGG | - | chr1_1:58216897-58216916 | Msa0031480:intron | 30.0% |
| TCAGTACATGGGTATAATAT+TGG | + | chr1_1:58217015-58217034 | None:intergenic | 30.0% | |
| AATATATCCAGTAGCATGAT+AGG | - | chr1_1:58217057-58217076 | Msa0031480:intron | 30.0% | |
| GTCCAACAAAATTAAGAAAG+GGG | - | chr1_1:58217427-58217446 | Msa0031480:intron | 30.0% | |
| ! | TTCCCCTTTCTTAATTTTGT+TGG | + | chr1_1:58217432-58217451 | None:intergenic | 30.0% |
| AGGGGAATGTACAAATTTAA+TGG | - | chr1_1:58217445-58217464 | Msa0031480:intron | 30.0% | |
| TATTCCCTGTTCTTTCTATT+TGG | - | chr1_1:58217566-58217585 | Msa0031480:intron | 30.0% | |
| ATTCCCTGTTCTTTCTATTT+GGG | - | chr1_1:58217567-58217586 | Msa0031480:intron | 30.0% | |
| AAACCCAAATAGAAAGAACA+GGG | + | chr1_1:58217573-58217592 | None:intergenic | 30.0% | |
| !!! | CGTGACTTGTTTTCAATAAT+AGG | + | chr1_1:58217796-58217815 | None:intergenic | 30.0% |
| !!! | TATGCAACGAGTATTTTTTG+AGG | - | chr1_1:58218010-58218029 | Msa0031480:CDS | 30.0% |
| !!! | TCAAGTTGTCCCATTTTTTT+AGG | - | chr1_1:58218104-58218123 | Msa0031480:intron | 30.0% |
| AATGGCAAGCCTAAAAAAAT+GGG | + | chr1_1:58218116-58218135 | None:intergenic | 30.0% | |
| TAATGGCAAGCCTAAAAAAA+TGG | + | chr1_1:58218117-58218136 | None:intergenic | 30.0% | |
| GCAAAAAATGTCTAGTACTT+TGG | + | chr1_1:58218407-58218426 | None:intergenic | 30.0% | |
| TGTTTCAGACTCAACTAAAT+AGG | + | chr1_1:58218446-58218465 | None:intergenic | 30.0% | |
| ATGACATGCTTTCAAATGTA+AGG | - | chr1_1:58218513-58218532 | Msa0031480:intron | 30.0% | |
| CTTTACTTTGCCTGTATTTA+TGG | - | chr1_1:58218557-58218576 | Msa0031480:intron | 30.0% | |
| GACATTTCAACCATAAATAC+AGG | + | chr1_1:58218570-58218589 | None:intergenic | 30.0% | |
| TGAACCAATTCTCAAATTAG+TGG | + | chr1_1:58218619-58218638 | None:intergenic | 30.0% | |
| !! | TTTCTTTGATAGAAAGCATC+GGG | + | chr1_1:58218889-58218908 | None:intergenic | 30.0% |
| ! | CAGATATAAGTATGGGTTAA+AGG | - | chr1_1:58219027-58219046 | Msa0031480:intron | 30.0% |
| !!! | AAATTGGCTATTTTGATGCT+AGG | - | chr1_1:58219097-58219116 | Msa0031480:CDS | 30.0% |
| CATAGGTCATAAATTGATAG+AGG | - | chr1_1:58219184-58219203 | Msa0031480:intron | 30.0% | |
| AACTGTTATGAATTCAGTTC+TGG | + | chr1_1:58219277-58219296 | None:intergenic | 30.0% | |
| ! | AATAGAAATCTAGCTAGCTT+AGG | - | chr1_1:58219306-58219325 | Msa0031480:intron | 30.0% |
| !! | TTTATTTTCAGCTTAGGCAT+TGG | - | chr1_1:58219535-58219554 | Msa0031480:intron | 30.0% |
| CATACAATAAAGGTAAACCT+AGG | + | chr1_1:58219638-58219657 | None:intergenic | 30.0% | |
| ! | TGAGGTGACATTTAGTTTAA+GGG | + | chr1_1:58219719-58219738 | None:intergenic | 30.0% |
| ! | TTGAGGTGACATTTAGTTTA+AGG | + | chr1_1:58219720-58219739 | None:intergenic | 30.0% |
| TATCTGAAAATGCGACATTT+AGG | + | chr1_1:58219760-58219779 | None:intergenic | 30.0% | |
| !!! | TGATTGAATATTTTTCGGGT+GGG | - | chr1_1:58219791-58219810 | Msa0031480:intron | 30.0% |
| TTATGGAACAAAACATGTTG+AGG | - | chr1_1:58219835-58219854 | Msa0031480:intron | 30.0% | |
| TCAACATACTCTAATTCATG+TGG | + | chr1_1:58220082-58220101 | None:intergenic | 30.0% | |
| !! | TTAACAAACTTTTTCCTGGT+AGG | + | chr1_1:58220489-58220508 | None:intergenic | 30.0% |
| !! | CAAGTTAACAAACTTTTTCC+TGG | + | chr1_1:58220493-58220512 | None:intergenic | 30.0% |
| !! | CAGGAAAAAGTTTGTTAACT+TGG | - | chr1_1:58220491-58220510 | Msa0031480:intron | 30.0% |
| TAACTTGGTCAATTCAGTTA+AGG | - | chr1_1:58220506-58220525 | Msa0031480:intron | 30.0% | |
| !! | TTTCTGATTTCTTTAGAGTG+TGG | - | chr1_1:58220594-58220613 | Msa0031480:intron | 30.0% |
| !! | TTCTGATTTCTTTAGAGTGT+GGG | - | chr1_1:58220595-58220614 | Msa0031480:intron | 30.0% |
| ATGGTAAACAAGTATTAGGA+TGG | - | chr1_1:58220659-58220678 | Msa0031480:intron | 30.0% | |
| ! | GATTTTACACTTAAATACCC+AGG | + | chr1_1:58221148-58221167 | None:intergenic | 30.0% |
| GTATCCTAAAAAGAAACGAA+TGG | + | chr1_1:58221208-58221227 | None:intergenic | 30.0% | |
| !!! | TCGTTATACACCGATTCTTT+TGG | - | chr1_1:58214264-58214283 | Msa0031480:three_prime_UTR | 35.0% |
| ATTCGAAGAGAAAACTGATC+TGG | + | chr1_1:58214339-58214358 | None:intergenic | 35.0% | |
| TTGATGTGGCAATACATCAT+TGG | + | chr1_1:58214916-58214935 | None:intergenic | 35.0% | |
| AAGAATCAAGTATGTGGTAG+TGG | - | chr1_1:58215111-58215130 | Msa0031480:intron | 35.0% | |
| CCGACAATGTAAAACTTTGT+AGG | + | chr1_1:58215242-58215261 | None:intergenic | 35.0% | |
| TCTAGAGAATGAACATGTCA+AGG | - | chr1_1:58215402-58215421 | Msa0031480:intron | 35.0% | |
| TGTCAAGGTAGTTAGTTAAC+AGG | - | chr1_1:58215417-58215436 | Msa0031480:intron | 35.0% | |
| !! | CTTTAGAACTTGAGTTACAG+CGG | - | chr1_1:58215517-58215536 | Msa0031480:intron | 35.0% |
| GATAACCAATAACATACCAG+AGG | + | chr1_1:58215802-58215821 | None:intergenic | 35.0% | |
| ATGAATTCACATGGTTTCCA+TGG | + | chr1_1:58215870-58215889 | None:intergenic | 35.0% | |
| ! | TCGGCTTGTAATATGATTGT+TGG | - | chr1_1:58216024-58216043 | Msa0031480:intron | 35.0% |
| TCTGCATTTGATAGAGTAGT+AGG | - | chr1_1:58216233-58216252 | Msa0031480:intron | 35.0% | |
| TGATAGAGTAGTAGGATTGT+TGG | - | chr1_1:58216241-58216260 | Msa0031480:intron | 35.0% | |
| ATTCAAAGCCTACAAAAAGG+AGG | + | chr1_1:58216576-58216595 | None:intergenic | 35.0% | |
| !! | GTTCTTTGAGAATGTTTTGC+AGG | - | chr1_1:58216598-58216617 | Msa0031480:intron | 35.0% |
| CATGAGAAATACAAGTCCTT+GGG | + | chr1_1:58216633-58216652 | None:intergenic | 35.0% | |
| ! | ATTCAGATTTGAGGAGTACA+TGG | + | chr1_1:58216788-58216807 | None:intergenic | 35.0% |
| CTCCTCAAATCTGAATAACT+TGG | - | chr1_1:58216792-58216811 | Msa0031480:intron | 35.0% | |
| TCAGCTTATGGTGATTTAAG+GGG | + | chr1_1:58216894-58216913 | None:intergenic | 35.0% | |
| ATAAACATCTCACGCTACAT+GGG | + | chr1_1:58216983-58217002 | None:intergenic | 35.0% | |
| !! | ACTTTACCGTTACCTTGTTT+TGG | + | chr1_1:58217148-58217167 | None:intergenic | 35.0% |
| AGCCTCTTGTGTAAAATACA+GGG | - | chr1_1:58217212-58217231 | Msa0031480:intron | 35.0% | |
| ! | TACCCTGTATTTTACACAAG+AGG | + | chr1_1:58217217-58217236 | None:intergenic | 35.0% |
| CTTGTGTAAAATACAGGGTA+AGG | - | chr1_1:58217217-58217236 | Msa0031480:intron | 35.0% | |
| GAAAAGTCAAAGCCATCAAA+GGG | + | chr1_1:58217319-58217338 | None:intergenic | 35.0% | |
| AGAAAAGTCAAAGCCATCAA+AGG | + | chr1_1:58217320-58217339 | None:intergenic | 35.0% | |
| TGCTTCTTTGTTACTCAAAG+AGG | - | chr1_1:58217341-58217360 | Msa0031480:intron | 35.0% | |
| GAGACATATAGATTTCAACG+TGG | - | chr1_1:58217496-58217515 | Msa0031480:intron | 35.0% | |
| GAAACCCAAATAGAAAGAAC+AGG | + | chr1_1:58217574-58217593 | None:intergenic | 35.0% | |
| CATTAAGAAATGTGTGTGTG+TGG | + | chr1_1:58217629-58217648 | None:intergenic | 35.0% | |
| GCAAAAGCTTAGACAAGATT+TGG | - | chr1_1:58217663-58217682 | Msa0031480:intron | 35.0% | |
| TATGTCACTATTTCCGTTAC+AGG | - | chr1_1:58217720-58217739 | Msa0031480:CDS | 35.0% | |
| !! | GTTTCACCGTCACTTATTTT+TGG | - | chr1_1:58217747-58217766 | Msa0031480:CDS | 35.0% |
| !!! | TATTTTTGGAGGCAGAAAGA+AGG | - | chr1_1:58217761-58217780 | Msa0031480:CDS | 35.0% |
| ! | GAGTTTAAAAAAGCCTTGTG+AGG | - | chr1_1:58217903-58217922 | Msa0031480:intron | 35.0% |
| TACAACAGCATATCACATCA+GGG | + | chr1_1:58217992-58218011 | None:intergenic | 35.0% | |
| ATACAACAGCATATCACATC+AGG | + | chr1_1:58217993-58218012 | None:intergenic | 35.0% | |
| ! | TTTAAGGAAGGCATGAGATT+TGG | + | chr1_1:58218191-58218210 | None:intergenic | 35.0% |
| CTGTAGGCATAGTTTAAAAG+AGG | - | chr1_1:58218313-58218332 | Msa0031480:intron | 35.0% | |
| GCATAGTTTAAAAGAGGTTC+TGG | - | chr1_1:58218319-58218338 | Msa0031480:intron | 35.0% | |
| !!! | GTCTAGTACTTTGGTTTTGA+CGG | + | chr1_1:58218398-58218417 | None:intergenic | 35.0% |
| GTTGCCACTAATTTGAGAAT+TGG | - | chr1_1:58218612-58218631 | Msa0031480:intron | 35.0% | |
| GTAACTTGGGTTATAAACAC+TGG | + | chr1_1:58218867-58218886 | None:intergenic | 35.0% | |
| ! | ATTGTATTTTCCCCTTTACC+AGG | - | chr1_1:58218924-58218943 | Msa0031480:intron | 35.0% |
| ! | TTGTATTTTCCCCTTTACCA+GGG | - | chr1_1:58218925-58218944 | Msa0031480:intron | 35.0% |
| ! | AAAGCATCACAAGATCTCAT+AGG | - | chr1_1:58219167-58219186 | Msa0031480:intron | 35.0% |
| ! | TGGTCTATCTCATTGATTGA+AGG | - | chr1_1:58219492-58219511 | Msa0031480:intron | 35.0% |
| ! | TCATTGATTGAAGGCAAAAG+TGG | - | chr1_1:58219501-58219520 | Msa0031480:intron | 35.0% |
| ! | TTGGGTATCAAGTACTGTAT+CGG | - | chr1_1:58219590-58219609 | Msa0031480:intron | 35.0% |
| TATCGGTATCTACACTGTAT+CGG | - | chr1_1:58219607-58219626 | Msa0031480:intron | 35.0% | |
| CGACAACTAGTAAAAACATC+TGG | + | chr1_1:58219682-58219701 | None:intergenic | 35.0% | |
| TTAGTTTAAGGGAGAAACAC+AGG | + | chr1_1:58219708-58219727 | None:intergenic | 35.0% | |
| CACCCGAAAAATATTCAATC+AGG | + | chr1_1:58219792-58219811 | None:intergenic | 35.0% | |
| !!! | CTGATTGAATATTTTTCGGG+TGG | - | chr1_1:58219790-58219809 | Msa0031480:intron | 35.0% |
| ! | TCATTGCAGATTCTCTTTTC+AGG | - | chr1_1:58219891-58219910 | Msa0031480:intron | 35.0% |
| ! | ATCTAGTTCATGAGAAATGC+TGG | - | chr1_1:58219958-58219977 | Msa0031480:intron | 35.0% |
| TAGAATCATCAAACAGAGAG+CGG | - | chr1_1:58220035-58220054 | Msa0031480:intron | 35.0% | |
| ATGTGGATCCACTAAATCAT+GGG | + | chr1_1:58220065-58220084 | None:intergenic | 35.0% | |
| ATGCTATAGCAACATACTGT+TGG | + | chr1_1:58220120-58220139 | None:intergenic | 35.0% | |
| ! | ATTTGGGATGTAATGCAATC+CGG | - | chr1_1:58220382-58220401 | Msa0031480:intron | 35.0% |
| !!! | ACATCAAAAGGAGCATTTTC+CGG | + | chr1_1:58220404-58220423 | None:intergenic | 35.0% |
| !! | ATCTGCATGCTTTTGGTTAT+AGG | - | chr1_1:58220451-58220470 | Msa0031480:intron | 35.0% |
| GTCAATTCAGTTAAGGATTC+TGG | - | chr1_1:58220513-58220532 | Msa0031480:intron | 35.0% | |
| AATTCAGTTAAGGATTCTGG+AGG | - | chr1_1:58220516-58220535 | Msa0031480:intron | 35.0% | |
| CATGCATGGATGAAAATACA+TGG | + | chr1_1:58220548-58220567 | None:intergenic | 35.0% | |
| ! | ATTTGCGGTTTTCAGTTCAT+TGG | + | chr1_1:58220638-58220657 | None:intergenic | 35.0% |
| GAACTGAAAACCGCAAATAA+TGG | - | chr1_1:58220640-58220659 | Msa0031480:intron | 35.0% | |
| TTTGCCAGATATAATGAACC+AGG | - | chr1_1:58221026-58221045 | Msa0031480:intron | 35.0% | |
| TTGCCAGATATAATGAACCA+GGG | - | chr1_1:58221027-58221046 | Msa0031480:intron | 35.0% | |
| ATGCCGAGTATCTATGATAA+GGG | - | chr1_1:58221107-58221126 | Msa0031480:exon | 35.0% | |
| TCAAAATTCCCATCACTACT+TGG | - | chr1_1:58221174-58221193 | Msa0031480:five_prime_UTR | 35.0% | |
| ! | CACTCCATTCGTTTCTTTTT+AGG | - | chr1_1:58221201-58221220 | Msa0031480:five_prime_UTR | 35.0% |
| TGTATAACGAACCCGGTTTA+GGG | + | chr1_1:58214254-58214273 | None:intergenic | 40.0% | |
| AATTGAACCTTAACGCTTCC+AGG | + | chr1_1:58214457-58214476 | None:intergenic | 40.0% | |
| CATAGATCATCTGAATCCAC+TGG | + | chr1_1:58214557-58214576 | None:intergenic | 40.0% | |
| ! | CAGTGGATTCAGATGATCTA+TGG | - | chr1_1:58214555-58214574 | Msa0031480:three_prime_UTR | 40.0% |
| GTTCTTAGAGAAGCAGCTAA+TGG | - | chr1_1:58214635-58214654 | Msa0031480:CDS | 40.0% | |
| TATATACACTGTCGCCGTAA+TGG | - | chr1_1:58214756-58214775 | Msa0031480:intron | 40.0% | |
| ACACAGACTCACAACCATTA+CGG | + | chr1_1:58214773-58214792 | None:intergenic | 40.0% | |
| ! | GGTGTGGATTATGACAAAGA+AGG | - | chr1_1:58215349-58215368 | Msa0031480:intron | 40.0% |
| ! | TTTGACTACTTGCTGCAGAT+AGG | - | chr1_1:58215483-58215502 | Msa0031480:intron | 40.0% |
| ATTACCTTCCTGAGCACAAA+AGG | + | chr1_1:58215543-58215562 | None:intergenic | 40.0% | |
| ! | GATTGTGTTTTGCCTTTCGT+AGG | - | chr1_1:58215737-58215756 | Msa0031480:intron | 40.0% |
| ! | TGTCTGGGATTCTTATGCTT+TGG | - | chr1_1:58215761-58215780 | Msa0031480:intron | 40.0% |
| TTCCTACCAATATGTGTCCA+TGG | - | chr1_1:58215850-58215869 | Msa0031480:intron | 40.0% | |
| TTCCATGGACACATATTGGT+AGG | + | chr1_1:58215855-58215874 | None:intergenic | 40.0% | |
| TGGTTTCCATGGACACATAT+TGG | + | chr1_1:58215859-58215878 | None:intergenic | 40.0% | |
| AATCACAGTCCACATCTGTT+CGG | - | chr1_1:58216005-58216024 | Msa0031480:intron | 40.0% | |
| TATTACAAGCCGAACAGATG+TGG | + | chr1_1:58216017-58216036 | None:intergenic | 40.0% | |
| TTAGCCCATATCCTCCTTAT+TGG | - | chr1_1:58216142-58216161 | Msa0031480:intron | 40.0% | |
| ! | TCAGGCGTGTTTGATTTATG+TGG | - | chr1_1:58216266-58216285 | Msa0031480:intron | 40.0% |
| ! | CAGGCGTGTTTGATTTATGT+GGG | - | chr1_1:58216267-58216286 | Msa0031480:intron | 40.0% |
| CTTCAATTCCTCGTAAGCAT+GGG | - | chr1_1:58216437-58216456 | Msa0031480:intron | 40.0% | |
| ! | TGTCTGCCTCTCTTTTACAA+TGG | - | chr1_1:58216494-58216513 | Msa0031480:intron | 40.0% |
| !! | GGAGGACAATGCTTTAGAAA+TGG | + | chr1_1:58216558-58216577 | None:intergenic | 40.0% |
| ! | AGCATTGTCCTCCTTTTTGT+AGG | - | chr1_1:58216565-58216584 | Msa0031480:intron | 40.0% |
| TTGCAGGTAAATTCTTCCCA+AGG | - | chr1_1:58216614-58216633 | Msa0031480:intron | 40.0% | |
| GCATGAGAAATACAAGTCCT+TGG | + | chr1_1:58216634-58216653 | None:intergenic | 40.0% | |
| CTAGTGACTAAAGAAGGAGA+AGG | + | chr1_1:58216843-58216862 | None:intergenic | 40.0% | |
| TTGGCACTAGTGACTAAAGA+AGG | + | chr1_1:58216849-58216868 | None:intergenic | 40.0% | |
| ATGAAGTCGCATCGTATCAT+TGG | + | chr1_1:58216868-58216887 | None:intergenic | 40.0% | |
| CATAAACATCTCACGCTACA+TGG | + | chr1_1:58216984-58217003 | None:intergenic | 40.0% | |
| CGTGAGATGTTTATGCTACA+TGG | - | chr1_1:58216989-58217008 | Msa0031480:intron | 40.0% | |
| !!! | TACCGTTACCTTGTTTTGGA+GGG | + | chr1_1:58217144-58217163 | None:intergenic | 40.0% |
| !!! | TTACCGTTACCTTGTTTTGG+AGG | + | chr1_1:58217145-58217164 | None:intergenic | 40.0% |
| CAGCCTCTTGTGTAAAATAC+AGG | - | chr1_1:58217211-58217230 | Msa0031480:intron | 40.0% | |
| GTGTAAAATACAGGGTAAGG+CGG | - | chr1_1:58217220-58217239 | Msa0031480:intron | 40.0% | |
| GTCTCAAGAATGCCTAAAAC+AGG | + | chr1_1:58217481-58217500 | None:intergenic | 40.0% | |
| !!! | TCACCGTCACTTATTTTTGG+AGG | - | chr1_1:58217750-58217769 | Msa0031480:CDS | 40.0% |
| CTGCCTCCAAAAATAAGTGA+CGG | + | chr1_1:58217756-58217775 | None:intergenic | 40.0% | |
| CAAATGCTAGTTACCTCACA+AGG | + | chr1_1:58217919-58217938 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGGATGGACTTTGC+TGG | - | chr1_1:58218252-58218271 | Msa0031480:intron | 40.0% |
| ! | TCTTCAGGTTCGAATTCTGA+AGG | - | chr1_1:58218484-58218503 | Msa0031480:intron | 40.0% |
| !! | TAGAAAGCATCGGGTAACTT+GGG | + | chr1_1:58218880-58218899 | None:intergenic | 40.0% |
| !! | ATAGAAAGCATCGGGTAACT+TGG | + | chr1_1:58218881-58218900 | None:intergenic | 40.0% |
| !! | TTCAGTTCTGGACAGTTACA+TGG | + | chr1_1:58219265-58219284 | None:intergenic | 40.0% |
| ! | GATTCATCACGTGCTTGTTA+TGG | - | chr1_1:58219818-58219837 | Msa0031480:intron | 40.0% |
| AGAATCATCAAACAGAGAGC+GGG | - | chr1_1:58220036-58220055 | Msa0031480:intron | 40.0% | |
| TGTGGATCCACTAAATCATG+GGG | + | chr1_1:58220064-58220083 | None:intergenic | 40.0% | |
| CATGTGGATCCACTAAATCA+TGG | + | chr1_1:58220066-58220085 | None:intergenic | 40.0% | |
| GTATATTGCTGTGACATCCT+TGG | - | chr1_1:58220207-58220226 | Msa0031480:intron | 40.0% | |
| ! | TGCTTGTTAGCTTGGGATTT+GGG | - | chr1_1:58220366-58220385 | Msa0031480:intron | 40.0% |
| ! | TTTTCATCCATGCATGTCTC+TGG | - | chr1_1:58220552-58220571 | Msa0031480:intron | 40.0% |
| AAGGGAAGGAAGAAAGGAAA+TGG | + | chr1_1:58220701-58220720 | None:intergenic | 40.0% | |
| CTTTCTTCCTTCCCTTTGTT+GGG | - | chr1_1:58220705-58220724 | Msa0031480:intron | 40.0% | |
| TTTCTTCCTTCCCTTTGTTG+GGG | - | chr1_1:58220706-58220725 | Msa0031480:intron | 40.0% | |
| ACAGAACTAGAGCAGATAAG+TGG | - | chr1_1:58220826-58220845 | Msa0031480:CDS | 40.0% | |
| GTGGTATTGCTGCAATTCTT+CGG | - | chr1_1:58220845-58220864 | Msa0031480:CDS | 40.0% | |
| TCGAAGACATGGAGATGTAA+TGG | - | chr1_1:58220884-58220903 | Msa0031480:CDS | 40.0% | |
| !! | GGAGATGTAATGGACAATGT+TGG | - | chr1_1:58220894-58220913 | Msa0031480:CDS | 40.0% |
| ACAATGTTGGTCAAGCAAGT+CGG | - | chr1_1:58220907-58220926 | Msa0031480:CDS | 40.0% | |
| TGCCAGATATAATGAACCAG+GGG | - | chr1_1:58221028-58221047 | Msa0031480:intron | 40.0% | |
| GATGCCGAGTATCTATGATA+AGG | - | chr1_1:58221106-58221125 | Msa0031480:exon | 40.0% | |
| TGCCGAGTATCTATGATAAG+GGG | - | chr1_1:58221108-58221127 | Msa0031480:exon | 40.0% | |
| CACCCCTTATCATAGATACT+CGG | + | chr1_1:58221113-58221132 | None:intergenic | 40.0% | |
| GAGTATCTATGATAAGGGGT+GGG | - | chr1_1:58221112-58221131 | Msa0031480:five_prime_UTR | 40.0% | |
| AGTGCTAACCAAGTAGTGAT+GGG | + | chr1_1:58221185-58221204 | None:intergenic | 40.0% | |
| GTGTATAACGAACCCGGTTT+AGG | + | chr1_1:58214255-58214274 | None:intergenic | 45.0% | |
| GAATCGGTGTATAACGAACC+CGG | + | chr1_1:58214261-58214280 | None:intergenic | 45.0% | |
| GCACGGAAGTCCAAAAGAAT+CGG | + | chr1_1:58214277-58214296 | None:intergenic | 45.0% | |
| AGTGTCAAATCCGGTTGAAC+CGG | - | chr1_1:58214308-58214327 | Msa0031480:three_prime_UTR | 45.0% | |
| CGAAAAGACTTTGTGCGCAA+TGG | - | chr1_1:58214430-58214449 | Msa0031480:three_prime_UTR | 45.0% | |
| AGCTCCTGGTGATTCAATCA+TGG | - | chr1_1:58214595-58214614 | Msa0031480:three_prime_UTR | 45.0% | |
| CAATCATGGCCGTTACTATC+AGG | - | chr1_1:58214609-58214628 | Msa0031480:exon | 45.0% | |
| CTTAGAGAAGCAGCTAATGG+TGG | - | chr1_1:58214638-58214657 | Msa0031480:CDS | 45.0% | |
| !!! | CTTTTTTTGGTTCCAGGGTG+TGG | - | chr1_1:58215333-58215352 | Msa0031480:intron | 45.0% |
| CTTTGTCATAATCCACACCC+TGG | + | chr1_1:58215348-58215367 | None:intergenic | 45.0% | |
| TTTGCCTTTCGTAGGATGTC+TGG | - | chr1_1:58215745-58215764 | Msa0031480:intron | 45.0% | |
| TTGCCTTTCGTAGGATGTCT+GGG | - | chr1_1:58215746-58215765 | Msa0031480:intron | 45.0% | |
| AATCCCAGACATCCTACGAA+AGG | + | chr1_1:58215752-58215771 | None:intergenic | 45.0% | |
| CTGGGATTCTTATGCTTTGG+AGG | - | chr1_1:58215764-58215783 | Msa0031480:intron | 45.0% | |
| ! | GTAGTAGGATTGTTGGTGTC+AGG | - | chr1_1:58216248-58216267 | Msa0031480:intron | 45.0% |
| GTATGACTGTTACTCGTTCG+CGG | - | chr1_1:58216407-58216426 | Msa0031480:intron | 45.0% | |
| GCTTCAATTCCTCGTAAGCA+TGG | - | chr1_1:58216436-58216455 | Msa0031480:intron | 45.0% | |
| !! | TCACCATAAGCTGATTTGGG+TGG | - | chr1_1:58216900-58216919 | Msa0031480:intron | 45.0% |
| !! | GGGTGGCTCTAGATCTAAAT+TGG | - | chr1_1:58216917-58216936 | Msa0031480:intron | 45.0% |
| GTATGGGACTGACATTAAGG+CGG | + | chr1_1:58216961-58216980 | None:intergenic | 45.0% | |
| TGGGTATGGGACTGACATTA+AGG | + | chr1_1:58216964-58216983 | None:intergenic | 45.0% | |
| ATCTCACGCTACATGGGTAT+GGG | + | chr1_1:58216977-58216996 | None:intergenic | 45.0% | |
| GACACACATGCTCAGTACAT+GGG | + | chr1_1:58217026-58217045 | None:intergenic | 45.0% | |
| AGACACACATGCTCAGTACA+TGG | + | chr1_1:58217027-58217046 | None:intergenic | 45.0% | |
| GACCCTCCAAAACAAGGTAA+CGG | - | chr1_1:58217139-58217158 | Msa0031480:CDS | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr1_1:58217166-58217185 | Msa0031480:CDS | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_1:58217206-58217225 | None:intergenic | 45.0% |
| ! | GGAAGGGGTCCTATCATTTT+TGG | + | chr1_1:58217257-58217276 | None:intergenic | 45.0% |
| AAAATGATAGGACCCCTTCC+CGG | - | chr1_1:58217257-58217276 | Msa0031480:intron | 45.0% | |
| ! | GGATTCTGCTGTCCTGTTTT+AGG | - | chr1_1:58217466-58217485 | Msa0031480:intron | 45.0% |
| TGTGCTGTAATTGCAAGTCC+TGG | - | chr1_1:58217524-58217543 | Msa0031480:intron | 45.0% | |
| CGGTGAAACTGATCCTGTAA+CGG | + | chr1_1:58217736-58217755 | None:intergenic | 45.0% | |
| ACGACCTCAGGATACAAGTA+CGG | - | chr1_1:58217832-58217851 | Msa0031480:intron | 45.0% | |
| !! | TTTTGGATGGACTTTGCTGG+TGG | - | chr1_1:58218255-58218274 | Msa0031480:intron | 45.0% |
| AGATACTAAGGCAGCACAAG+AGG | - | chr1_1:58218370-58218389 | Msa0031480:intron | 45.0% | |
| TCAACTAACCTTCAGCGAGT+TGG | - | chr1_1:58219224-58219243 | Msa0031480:intron | 45.0% | |
| ! | ACACTGTATCGGTATCTCCT+AGG | - | chr1_1:58219618-58219637 | Msa0031480:intron | 45.0% |
| TCACCTCAAAGTCGTGAAGA+TGG | - | chr1_1:58219731-58219750 | Msa0031480:CDS | 45.0% | |
| TAGCCATCTTCACGACTTTG+AGG | + | chr1_1:58219737-58219756 | None:intergenic | 45.0% | |
| !!! | GAATATTTTTCGGGTGGGAC+AGG | - | chr1_1:58219796-58219815 | Msa0031480:intron | 45.0% |
| GAATCATCAAACAGAGAGCG+GGG | - | chr1_1:58220037-58220056 | Msa0031480:intron | 45.0% | |
| GTGGATCCACTAAATCATGG+GGG | + | chr1_1:58220063-58220082 | None:intergenic | 45.0% | |
| TGCTGTGACATCCTTGGAAA+TGG | - | chr1_1:58220213-58220232 | Msa0031480:intron | 45.0% | |
| ! | TACCATCCTGCTTGTTAGCT+TGG | - | chr1_1:58220358-58220377 | Msa0031480:intron | 45.0% |
| ! | ACCATCCTGCTTGTTAGCTT+GGG | - | chr1_1:58220359-58220378 | Msa0031480:intron | 45.0% |
| CAAATCCCAAGCTAACAAGC+AGG | + | chr1_1:58220367-58220386 | None:intergenic | 45.0% | |
| ! | CTGCTTGTTAGCTTGGGATT+TGG | - | chr1_1:58220365-58220384 | Msa0031480:intron | 45.0% |
| GGAATGCAGATATACCTACC+AGG | - | chr1_1:58220472-58220491 | Msa0031480:intron | 45.0% | |
| CCAACAAAGGGAAGGAAGAA+AGG | + | chr1_1:58220707-58220726 | None:intergenic | 45.0% | |
| CCTTTCTTCCTTCCCTTTGT+TGG | - | chr1_1:58220704-58220723 | Msa0031480:intron | 45.0% | |
| TCTCCATGTCTTCGAGATCA+GGG | + | chr1_1:58220879-58220898 | None:intergenic | 45.0% | |
| ATCTCCATGTCTTCGAGATC+AGG | + | chr1_1:58220880-58220899 | None:intergenic | 45.0% | |
| GCCAGATATAATGAACCAGG+GGG | - | chr1_1:58221029-58221048 | Msa0031480:intron | 45.0% | |
| TCCCCCTGGTTCATTATATC+TGG | + | chr1_1:58221033-58221052 | None:intergenic | 45.0% | |
| ATACTCTACTACAATCCCCC+TGG | + | chr1_1:58221047-58221066 | None:intergenic | 45.0% | |
| CGAGTATCTATGATAAGGGG+TGG | - | chr1_1:58221111-58221130 | Msa0031480:five_prime_UTR | 45.0% | |
| GAGTGCTAACCAAGTAGTGA+TGG | + | chr1_1:58221186-58221205 | None:intergenic | 45.0% | |
| !! | TTTATTATGTAATAATAATA+GGG | - | chr1_1:58215280-58215299 | Msa0031480:intron | 5.0% |
| ATAACGAACCCGGTTTAGGG+AGG | + | chr1_1:58214251-58214270 | None:intergenic | 50.0% | |
| AACCGGATTTGACACTGGTC+CGG | + | chr1_1:58214304-58214323 | None:intergenic | 50.0% | |
| GGTTCAACCGGATTTGACAC+TGG | + | chr1_1:58214309-58214328 | None:intergenic | 50.0% | |
| GAAAACTGATCTGGACCAGC+CGG | + | chr1_1:58214330-58214349 | None:intergenic | 50.0% | |
| !! | CAATGGACCTGGAAGCGTTA+AGG | - | chr1_1:58214447-58214466 | Msa0031480:three_prime_UTR | 50.0% |
| ! | TGATACACAGATGGTGCCAG+TGG | - | chr1_1:58214538-58214557 | Msa0031480:three_prime_UTR | 50.0% |
| ACGGCCATGATTGAATCACC+AGG | + | chr1_1:58214602-58214621 | None:intergenic | 50.0% | |
| ATAACATACCAGAGGCCTGC+TGG | + | chr1_1:58215794-58215813 | None:intergenic | 50.0% | |
| GCAGGCCTCTGGTATGTTAT+TGG | - | chr1_1:58215794-58215813 | Msa0031480:intron | 50.0% | |
| !! | TGCAAGTGCTGATCTAGCTG+TGG | - | chr1_1:58216102-58216121 | Msa0031480:intron | 50.0% |
| !! | GCTGTGGTGTTGATGCAAGA+AGG | - | chr1_1:58216118-58216137 | Msa0031480:intron | 50.0% |
| CTCTCGTAACCAGCAATAGC+AGG | + | chr1_1:58216463-58216482 | None:intergenic | 50.0% | |
| GAGCCACCCAAATCAGCTTA+TGG | + | chr1_1:58216906-58216925 | None:intergenic | 50.0% | |
| CATCTCACGCTACATGGGTA+TGG | + | chr1_1:58216978-58216997 | None:intergenic | 50.0% | |
| ATCCAGTAGCATGATAGGCC+TGG | - | chr1_1:58217062-58217081 | Msa0031480:intron | 50.0% | |
| ATCCAGGCCTATCATGCTAC+TGG | + | chr1_1:58217067-58217086 | None:intergenic | 50.0% | |
| GTCACGTGACTGAAAGGTCA+CGG | - | chr1_1:58217172-58217191 | Msa0031480:CDS | 50.0% | |
| TCACGTGACTGAAAGGTCAC+GGG | - | chr1_1:58217173-58217192 | Msa0031480:CDS | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr1_1:58217284-58217303 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr1_1:58217285-58217304 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+TGG | - | chr1_1:58217289-58217308 | Msa0031480:intron | 50.0% |
| ! | TGCAGGAGCTTTAGTGCACT+GGG | - | chr1_1:58217290-58217309 | Msa0031480:intron | 50.0% |
| ATTCTCACTCACACGACCTC+AGG | - | chr1_1:58217820-58217839 | Msa0031480:intron | 50.0% | |
| GCAACCGTACTTGTATCCTG+AGG | + | chr1_1:58217839-58217858 | None:intergenic | 50.0% | |
| ! | TTTTCCCCTTTACCAGGGCA+AGG | - | chr1_1:58218930-58218949 | Msa0031480:intron | 50.0% |
| TTTCCCCTTTACCAGGGCAA+GGG | - | chr1_1:58218931-58218950 | Msa0031480:intron | 50.0% | |
| AGTTCCCTTGCCCTGGTAAA+GGG | + | chr1_1:58218938-58218957 | None:intergenic | 50.0% | |
| TAGTTCCCTTGCCCTGGTAA+AGG | + | chr1_1:58218939-58218958 | None:intergenic | 50.0% | |
| TTGAAGTAGTTCCCTTGCCC+TGG | + | chr1_1:58218945-58218964 | None:intergenic | 50.0% | |
| TTGCACAGCTAGGCGTTCAT+GGG | + | chr1_1:58219864-58219883 | None:intergenic | 50.0% | |
| TTTGCACAGCTAGGCGTTCA+TGG | + | chr1_1:58219865-58219884 | None:intergenic | 50.0% | |
| !! | TGAGAAGCGTTTGCACAGCT+AGG | + | chr1_1:58219874-58219893 | None:intergenic | 50.0% |
| TCCCAAGCTAACAAGCAGGA+TGG | + | chr1_1:58220363-58220382 | None:intergenic | 50.0% | |
| ACGTTCTCCAGAGACATGCA+TGG | + | chr1_1:58220562-58220581 | None:intergenic | 50.0% | |
| ACAGCAGCATCCCCAACAAA+GGG | + | chr1_1:58220719-58220738 | None:intergenic | 50.0% | |
| ATGTCTTCGAGATCAGGGAG+AGG | + | chr1_1:58220874-58220893 | None:intergenic | 50.0% | |
| TCTCCCTGATCTCGAAGACA+TGG | - | chr1_1:58220873-58220892 | Msa0031480:CDS | 50.0% | |
| TTGGTCAAGCAAGTCGGTGT+TGG | - | chr1_1:58220913-58220932 | Msa0031480:CDS | 50.0% | |
| TGATGTTACAACTGCCCCTC+AGG | - | chr1_1:58220978-58220997 | Msa0031480:intron | 50.0% | |
| GATTTGACACTGGTCCGGAC+GGG | + | chr1_1:58214299-58214318 | None:intergenic | 55.0% | |
| GGATTTGACACTGGTCCGGA+CGG | + | chr1_1:58214300-58214319 | None:intergenic | 55.0% | |
| GTCCGGACCAGTGTCAAATC+CGG | - | chr1_1:58214299-58214318 | Msa0031480:three_prime_UTR | 55.0% | |
| TCAAATCCGGTTGAACCGGC+TGG | - | chr1_1:58214312-58214331 | Msa0031480:three_prime_UTR | 55.0% | |
| GACTTTGTGCGCAATGGACC+TGG | - | chr1_1:58214436-58214455 | Msa0031480:three_prime_UTR | 55.0% | |
| ! | GGTTCCGTTTTGCGTGTTCG+CGG | - | chr1_1:58215370-58215389 | Msa0031480:intron | 55.0% |
| ! | GTTCCGTTTTGCGTGTTCGC+GGG | - | chr1_1:58215371-58215390 | Msa0031480:intron | 55.0% |
| CTTCCCGCGAACACGCAAAA+CGG | + | chr1_1:58215377-58215396 | None:intergenic | 55.0% | |
| ! | TACAGCGGCCTTTTGTGCTC+AGG | - | chr1_1:58215532-58215551 | Msa0031480:intron | 55.0% |
| !! | TGCTTTGGAGGTACTCCAGC+AGG | - | chr1_1:58215776-58215795 | Msa0031480:intron | 55.0% |
| GCTAGATCAGCACTTGCAGC+AGG | + | chr1_1:58216100-58216119 | None:intergenic | 55.0% | |
| ATAGCAGGCCCATGCTTACG+AGG | + | chr1_1:58216448-58216467 | None:intergenic | 55.0% | |
| AAGCATGGGCCTGCTATTGC+TGG | - | chr1_1:58216451-58216470 | Msa0031480:intron | 55.0% | |
| GAGACACGACATCGTCATCC+AGG | + | chr1_1:58217083-58217102 | None:intergenic | 55.0% | |
| AGGAGGGACCCTCCAAAACA+AGG | - | chr1_1:58217133-58217152 | Msa0031480:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_1:58217185-58217204 | Msa0031480:CDS | 55.0% | |
| TGCACTGGGCTTCCCTTTGA+TGG | - | chr1_1:58217304-58217323 | Msa0031480:intron | 55.0% | |
| GTTCCCTTGCCCTGGTAAAG+GGG | + | chr1_1:58218937-58218956 | None:intergenic | 55.0% | |
| GCTGAATGCCAACTCGCTGA+AGG | + | chr1_1:58219235-58219254 | None:intergenic | 55.0% | |
| CAGCATCCCCAACAAAGGGA+AGG | + | chr1_1:58220715-58220734 | None:intergenic | 55.0% | |
| CACAGCAGCATCCCCAACAA+AGG | + | chr1_1:58220720-58220739 | None:intergenic | 55.0% | |
| ACTTGCCTAGGAGTCCTGAG+GGG | + | chr1_1:58220995-58221014 | None:intergenic | 55.0% | |
| CACTTGCCTAGGAGTCCTGA+GGG | + | chr1_1:58220996-58221015 | None:intergenic | 55.0% | |
| CTCAGGACTCCTAGGCAAGT+GGG | - | chr1_1:58220995-58221014 | Msa0031480:intron | 55.0% | |
| ACTCAGCATCCCACTTGCCT+AGG | + | chr1_1:58221007-58221026 | None:intergenic | 55.0% | |
| TTTGGACTTCCGTGCCCGTC+CGG | - | chr1_1:58214282-58214301 | Msa0031480:three_prime_UTR | 60.0% | |
| ! | TCTGGACCAGCCGGTTCAAC+CGG | + | chr1_1:58214321-58214340 | None:intergenic | 60.0% |
| ! | GCGGCCTTTTGTGCTCAGGA+AGG | - | chr1_1:58215536-58215555 | Msa0031480:intron | 60.0% |
| AACTGCCCCTCAGGACTCCT+AGG | - | chr1_1:58220987-58221006 | Msa0031480:intron | 60.0% | |
| CCACTTGCCTAGGAGTCCTG+AGG | + | chr1_1:58220997-58221016 | None:intergenic | 60.0% | |
| CCTCAGGACTCCTAGGCAAG+TGG | - | chr1_1:58220994-58221013 | Msa0031480:intron | 60.0% | |
| GGGTGGGTACTTGTGCTCCT+GGG | - | chr1_1:58221128-58221147 | Msa0031480:five_prime_UTR | 60.0% | |
| ! | GAGGTACTCCAGCAGGCCTC+TGG | - | chr1_1:58215783-58215802 | Msa0031480:intron | 65.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1_1:58217272-58217291 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1_1:58217273-58217292 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | + | chr1_1:58217274-58217293 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | - | chr1_1:58217273-58217292 | Msa0031480:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr1_1:58217278-58217297 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr1_1:58217279-58217298 | None:intergenic | 65.0% | |
| GCGGGGCCCCCATGATTTAG+TGG | - | chr1_1:58220054-58220073 | Msa0031480:intron | 65.0% | |
| GGGGTGGGTACTTGTGCTCC+TGG | - | chr1_1:58221127-58221146 | Msa0031480:five_prime_UTR | 65.0% | |
| GACACTGGTCCGGACGGGCA+CGG | + | chr1_1:58214294-58214313 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58214246 | 58221280 | 58214246 | ID=Msa0031480;Name=Msa0031480 |
| chr1_1 | mRNA | 58214246 | 58221280 | 58214246 | ID=Msa0031480-mRNA-1;Parent=Msa0031480;Name=Msa0031480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=172|1|1|1|1|1|15|377|379 |
| chr1_1 | exon | 58214246 | 58214696 | 58214246 | ID=Msa0031480-mRNA-1:exon:17786;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58214947 | 58215053 | 58214947 | ID=Msa0031480-mRNA-1:exon:17785;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58215614 | 58215708 | 58215614 | ID=Msa0031480-mRNA-1:exon:17784;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58216997 | 58217035 | 58216997 | ID=Msa0031480-mRNA-1:exon:17783;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58217135 | 58217207 | 58217135 | ID=Msa0031480-mRNA-1:exon:17782;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58217678 | 58217784 | 58217678 | ID=Msa0031480-mRNA-1:exon:17781;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58217970 | 58218038 | 58217970 | ID=Msa0031480-mRNA-1:exon:17780;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58218907 | 58218939 | 58218907 | ID=Msa0031480-mRNA-1:exon:17779;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58219043 | 58219118 | 58219043 | ID=Msa0031480-mRNA-1:exon:17778;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58219356 | 58219431 | 58219356 | ID=Msa0031480-mRNA-1:exon:17777;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58219722 | 58219767 | 58219722 | ID=Msa0031480-mRNA-1:exon:17776;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58219969 | 58220025 | 58219969 | ID=Msa0031480-mRNA-1:exon:17775;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58220103 | 58220177 | 58220103 | ID=Msa0031480-mRNA-1:exon:17774;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58220817 | 58220978 | 58220817 | ID=Msa0031480-mRNA-1:exon:17773;Parent=Msa0031480-mRNA-1 |
| chr1_1 | exon | 58221058 | 58221280 | 58221058 | ID=Msa0031480-mRNA-1:exon:17772;Parent=Msa0031480-mRNA-1 |
| chr1_1 | five_prime_UTR | 58221109 | 58221280 | 58221109 | ID=Msa0031480-mRNA-1:five_prime_utr;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58221058 | 58221108 | 58221058 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58220817 | 58220978 | 58220817 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58220103 | 58220177 | 58220103 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58219969 | 58220025 | 58219969 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58219722 | 58219767 | 58219722 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58219356 | 58219431 | 58219356 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58219043 | 58219118 | 58219043 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58218907 | 58218939 | 58218907 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58217970 | 58218038 | 58217970 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58217678 | 58217784 | 58217678 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58217135 | 58217207 | 58217135 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58216997 | 58217035 | 58216997 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58215614 | 58215708 | 58215614 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58214947 | 58215053 | 58214947 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | CDS | 58214623 | 58214696 | 58214623 | ID=Msa0031480-mRNA-1:cds;Parent=Msa0031480-mRNA-1 |
| chr1_1 | three_prime_UTR | 58214246 | 58214622 | 58214246 | ID=Msa0031480-mRNA-1:three_prime_utr;Parent=Msa0031480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
