Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126470 | sp|Q9ZT87|PEL1_ARATH | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126470 | A0A072VLU0 | 99.208 | 379 | 3 | 0 | 1 | 379 | 1 | 379 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031480 | Msa0126470 | 0.902487 | 9.224682e-79 | -8.615850e-47 |
| Msa0078750 | Msa0126470 | 0.902255 | 1.168822e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126470 | MtrunA17_Chr1g0189481 | 99.208 | 379 | 3 | 0 | 1 | 379 | 1 | 379 | 0.0 | 776 |
| Msa0126470 | MtrunA17_Chr7g0265321 | 43.878 | 392 | 203 | 5 | 1 | 378 | 1 | 389 | 7.73e-102 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126470 | AT4G27650.2 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0126470 | AT4G27650.1 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0126470 | AT4G27650.3 | 78.892 | 379 | 79 | 1 | 1 | 379 | 1 | 378 | 0.0 | 634 |
| Msa0126470 | AT3G58390.1 | 70.500 | 400 | 92 | 3 | 1 | 379 | 1 | 395 | 0.0 | 578 |
Find 121 sgRNAs with CRISPR-Local
Find 449 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATTCAGTTAAGGATTC+TGG | 0.172762 | 1_3:-55575929 | Msa0126470:CDS |
| GTGTATAACGAACCCGGTTT+AGG | 0.213385 | 1_3:+55582196 | None:intergenic |
| GCATAGTTTAAAAGAGGTTT+TGG | 0.278574 | 1_3:-55578127 | Msa0126470:CDS |
| TTAGCCCATATCCTCCTTAT+TGG | 0.278692 | 1_3:-55580304 | Msa0126470:CDS |
| ATATCCTCCTTATTGGTAAA+AGG | 0.288893 | 1_3:-55580297 | Msa0126470:intron |
| TCGTTATACACCGATTCTTT+TGG | 0.301040 | 1_3:-55582184 | Msa0126470:five_prime_UTR |
| TTTATCATGTTCATGACATT+TGG | 0.301926 | 1_3:+55578099 | None:intergenic |
| GTAACTCAAGTTCTAAAGTA+TGG | 0.306803 | 1_3:+55580934 | None:intergenic |
| TTTGCCTTTCGTAGGATGTC+TGG | 0.312960 | 1_3:-55580701 | Msa0126470:intron |
| TGTATAACGAACCCGGTTTA+GGG | 0.326317 | 1_3:+55582197 | None:intergenic |
| AATTGAACCTTAACGCTTCC+AGG | 0.331018 | 1_3:+55581994 | None:intergenic |
| TGAACGTGTTAAACTCAAAT+TGG | 0.335052 | 1_3:-55581778 | Msa0126470:CDS |
| TGTCTGGGATTCTTATGCTT+TGG | 0.353497 | 1_3:-55580685 | Msa0126470:CDS |
| GATTCATCACGTGCTTGTTA+TGG | 0.355531 | 1_3:-55576628 | Msa0126470:CDS |
| TTTGCACAGCTAGGCGTTCA+TGG | 0.362499 | 1_3:+55576584 | None:intergenic |
| CAATCATGGCCGTTACTATC+AGG | 0.364180 | 1_3:-55581839 | Msa0126470:CDS |
| AACCGAACGTTTCCCTAAAC+CGG | 0.364930 | 1_3:-55582209 | Msa0126470:five_prime_UTR |
| ATCTCCATGTCTTCGAGATC+AGG | 0.375283 | 1_3:+55575561 | None:intergenic |
| CTGGGATTCTTATGCTTTGG+AGG | 0.376577 | 1_3:-55580682 | Msa0126470:CDS |
| TAACTTGGTCAATTCAGTTA+AGG | 0.403397 | 1_3:-55575936 | Msa0126470:CDS |
| TCAAAATTCCCATCACTACT+TGG | 0.407590 | 1_3:-55575262 | Msa0126470:three_prime_UTR |
| ATGCCGAGTATCTATGATAA+GGG | 0.424992 | 1_3:-55575329 | Msa0126470:three_prime_UTR |
| GGGGTGGGTACTTGTGCTCC+TGG | 0.431835 | 1_3:-55575309 | Msa0126470:three_prime_UTR |
| AAGCATGGGCCTGCTATTGC+TGG | 0.435283 | 1_3:-55579995 | Msa0126470:CDS |
| TCTGGACCAGCCGGTTCAAC+CGG | 0.435915 | 1_3:+55582130 | None:intergenic |
| GACTTTGTGCGCAATGGACC+TGG | 0.437274 | 1_3:-55582012 | Msa0126470:CDS |
| GAGGTACTCCAGCAGGCCTC+TGG | 0.441982 | 1_3:-55580663 | Msa0126470:intron |
| AGTGTCAAATCCGGTTGAAC+CGG | 0.445181 | 1_3:-55582140 | Msa0126470:five_prime_UTR |
| CAATGGACCTGGAAGCGTTA+AGG | 0.450341 | 1_3:-55582001 | Msa0126470:intron |
| TGCTTTGGAGGTACTCCAGC+AGG | 0.452022 | 1_3:-55580670 | Msa0126470:CDS |
| CAGTGGATTCAGATGATCTA+TGG | 0.452319 | 1_3:-55581893 | Msa0126470:CDS |
| TTGCCTTTCGTAGGATGTCT+GGG | 0.452424 | 1_3:-55580700 | Msa0126470:intron |
| GTGGTATTGCTGCAATTCTT+CGG | 0.459436 | 1_3:-55575593 | Msa0126470:CDS |
| CGAAAAGACTTTGTGCGCAA+TGG | 0.462477 | 1_3:-55582018 | Msa0126470:CDS |
| TTTACCAATAAGGAGGATAT+GGG | 0.463278 | 1_3:+55580300 | None:intergenic |
| TATGCGGTCGCGGCGGCTAG+TGG | 0.464523 | 1_3:+55582243 | None:intergenic |
| ATTCGAAGAGAAAACTGATC+TGG | 0.466395 | 1_3:+55582112 | None:intergenic |
| TTTGGACTTCCGTGCCCGTC+CGG | 0.468900 | 1_3:-55582166 | Msa0126470:five_prime_UTR |
| GAACATGATAAAAGATACTA+AGG | 0.469528 | 1_3:-55578088 | Msa0126470:CDS |
| ATAACATACCAGAGGCCTGC+TGG | 0.479042 | 1_3:+55580655 | None:intergenic |
| GATGCCGAGTATCTATGATA+AGG | 0.485861 | 1_3:-55575330 | Msa0126470:three_prime_UTR |
| CTGTAGGCATAGTTTAAAAG+AGG | 0.487997 | 1_3:-55578133 | Msa0126470:intron |
| AACTGCCCCTCAGGACTCCT+AGG | 0.489903 | 1_3:-55575449 | Msa0126470:three_prime_UTR |
| ATTACCTTCCTGAGCACAAA+AGG | 0.492792 | 1_3:+55580906 | None:intergenic |
| GTCCGGACCAGTGTCAAATC+CGG | 0.496845 | 1_3:-55582149 | Msa0126470:five_prime_UTR |
| CTTCCCGCGAACACGCAAAA+CGG | 0.498620 | 1_3:+55581072 | None:intergenic |
| TTGCACAGCTAGGCGTTCAT+GGG | 0.499013 | 1_3:+55576585 | None:intergenic |
| TGATGTTACAACTGCCCCTC+AGG | 0.500770 | 1_3:-55575458 | Msa0126470:three_prime_UTR |
| TCGAAGACATGGAGATGTAA+TGG | 0.501027 | 1_3:-55575554 | Msa0126470:exon |
| GCTAGATCAGCACTTGCAGC+AGG | 0.502678 | 1_3:+55580349 | None:intergenic |
| GCTTCAATTCCTCGTAAGCA+TGG | 0.505004 | 1_3:-55580010 | Msa0126470:CDS |
| GTATATAATTTGATAGCTCC+TGG | 0.505012 | 1_3:-55581867 | Msa0126470:CDS |
| GTTCTTAGAGAAGCAGCTAA+TGG | 0.507930 | 1_3:-55581813 | Msa0126470:CDS |
| TCAAATCCGGTTGAACCGGC+TGG | 0.509351 | 1_3:-55582136 | Msa0126470:five_prime_UTR |
| AACCGGATTTGACACTGGTC+CGG | 0.509881 | 1_3:+55582147 | None:intergenic |
| CTCTCGTAACCAGCAATAGC+AGG | 0.515882 | 1_3:+55579986 | None:intergenic |
| GGGTGGGTACTTGTGCTCCT+GGG | 0.516862 | 1_3:-55575308 | Msa0126470:three_prime_UTR |
| ATTCTCACTCACACGACCTC+AGG | 0.527617 | 1_3:-55578626 | Msa0126470:CDS |
| ACCCGGTTTAGGGAAACGTT+CGG | 0.531881 | 1_3:+55582207 | None:intergenic |
| ACTCAGCATCCCACTTGCCT+AGG | 0.534636 | 1_3:+55575432 | None:intergenic |
| TCTTCAGGTTCGAATTCTGA+AGG | 0.535228 | 1_3:-55577962 | Msa0126470:intron |
| TTGGTCAAGCAAGTCGGTGT+TGG | 0.535309 | 1_3:-55575525 | Msa0126470:three_prime_UTR |
| TCTCCATGTCTTCGAGATCA+GGG | 0.535323 | 1_3:+55575562 | None:intergenic |
| GAGTGCTAACCAAGTAGTGA+TGG | 0.536610 | 1_3:+55575253 | None:intergenic |
| TGTGCTGTAATTGCAAGTCC+TGG | 0.539910 | 1_3:-55578922 | Msa0126470:CDS |
| GCACGGAAGTCCAAAAGAAT+CGG | 0.540175 | 1_3:+55582174 | None:intergenic |
| AGCTCCTGGTGATTCAATCA+TGG | 0.552812 | 1_3:-55581853 | Msa0126470:CDS |
| GTATGACTGTTACTCGTTCG+CGG | 0.553104 | 1_3:-55580039 | Msa0126470:CDS |
| AGATACTAAGGCAGCACAAG+AGG | 0.557963 | 1_3:-55578076 | Msa0126470:intron |
| GCGGCTAGTGGAAGTGAGAG+TGG | 0.568030 | 1_3:+55582255 | None:intergenic |
| CACCCCTTATCATAGATACT+CGG | 0.570533 | 1_3:+55575326 | None:intergenic |
| CGAGTATCTATGATAAGGGG+TGG | 0.571946 | 1_3:-55575325 | Msa0126470:three_prime_UTR |
| CCACTTGCCTAGGAGTCCTG+AGG | 0.572246 | 1_3:+55575442 | None:intergenic |
| GATTTGACACTGGTCCGGAC+GGG | 0.574764 | 1_3:+55582152 | None:intergenic |
| CATGCATGGATGAAAATACA+TGG | 0.575010 | 1_3:+55575897 | None:intergenic |
| GGATTTGACACTGGTCCGGA+CGG | 0.577442 | 1_3:+55582151 | None:intergenic |
| GACACTGGTCCGGACGGGCA+CGG | 0.579581 | 1_3:+55582157 | None:intergenic |
| CTCAGGACTCCTAGGCAAGT+GGG | 0.583005 | 1_3:-55575441 | Msa0126470:three_prime_UTR |
| CTTCAATTCCTCGTAAGCAT+GGG | 0.583987 | 1_3:-55580009 | Msa0126470:CDS |
| TCTCCCTGATCTCGAAGACA+TGG | 0.585381 | 1_3:-55575565 | Msa0126470:CDS |
| TTAACTCTCATATGCGGTCG+CGG | 0.586918 | 1_3:+55582233 | None:intergenic |
| GAAAACTGATCTGGACCAGC+CGG | 0.592827 | 1_3:+55582121 | None:intergenic |
| CATAGATCATCTGAATCCAC+TGG | 0.593444 | 1_3:+55581894 | None:intergenic |
| CTAGTGGAAGTGAGAGTGGA+GGG | 0.594989 | 1_3:+55582259 | None:intergenic |
| TTATGGAACAAAACATGTTG+AGG | 0.595098 | 1_3:-55576611 | Msa0126470:CDS |
| TTTGCCAGATATAATGAACC+AGG | 0.595292 | 1_3:-55575410 | Msa0126470:three_prime_UTR |
| CCTCAGGACTCCTAGGCAAG+TGG | 0.595778 | 1_3:-55575442 | Msa0126470:three_prime_UTR |
| TGAGAAGCGTTTGCACAGCT+AGG | 0.600897 | 1_3:+55576575 | None:intergenic |
| ACCGAACGTTTCCCTAAACC+GGG | 0.601515 | 1_3:-55582208 | Msa0126470:five_prime_UTR |
| AAGAACTTTCCTGATAGTAA+CGG | 0.602859 | 1_3:+55581830 | None:intergenic |
| GGTTCAACCGGATTTGACAC+TGG | 0.603643 | 1_3:+55582142 | None:intergenic |
| CTTAGAGAAGCAGCTAATGG+TGG | 0.604388 | 1_3:-55581810 | Msa0126470:CDS |
| TGATACACAGATGGTGCCAG+TGG | 0.604532 | 1_3:-55581910 | Msa0126470:intron |
| ACAGAACTAGAGCAGATAAG+TGG | 0.610661 | 1_3:-55575612 | Msa0126470:intron |
| CACTTGCCTAGGAGTCCTGA+GGG | 0.611537 | 1_3:+55575443 | None:intergenic |
| TCTAGAGAATGAACATGTCA+AGG | 0.615714 | 1_3:-55581044 | Msa0126470:intron |
| AATTCAGTTAAGGATTCTGG+AGG | 0.623215 | 1_3:-55575926 | Msa0126470:CDS |
| AGTGCTAACCAAGTAGTGAT+GGG | 0.627817 | 1_3:+55575254 | None:intergenic |
| TGCAAGTGCTGATCTAGCTG+TGG | 0.630199 | 1_3:-55580344 | Msa0126470:CDS |
| CTTTAGAACTTGAGTTACAG+CGG | 0.635772 | 1_3:-55580929 | Msa0126470:CDS |
| ATGTCTTCGAGATCAGGGAG+AGG | 0.648204 | 1_3:+55575567 | None:intergenic |
| GCTGTGGTGTTGATGCAAGA+AGG | 0.651031 | 1_3:-55580328 | Msa0126470:CDS |
| ACGGCCATGATTGAATCACC+AGG | 0.658374 | 1_3:+55581849 | None:intergenic |
| ATAGCAGGCCCATGCTTACG+AGG | 0.660640 | 1_3:+55580001 | None:intergenic |
| CGGTTCTTAACTCTCATATG+CGG | 0.661505 | 1_3:+55582227 | None:intergenic |
| GGTGTGGATTATGACAAAGA+AGG | 0.663103 | 1_3:-55581097 | Msa0126470:CDS |
| GAGTATCTATGATAAGGGGT+GGG | 0.663187 | 1_3:-55575324 | Msa0126470:three_prime_UTR |
| GGAATGCAGATATACCTACC+AGG | 0.665150 | 1_3:-55575970 | Msa0126470:CDS |
| GCTAGTGGAAGTGAGAGTGG+AGG | 0.666058 | 1_3:+55582258 | None:intergenic |
| TGCCAGATATAATGAACCAG+GGG | 0.666895 | 1_3:-55575408 | Msa0126470:three_prime_UTR |
| ACAATGTTGGTCAAGCAAGT+CGG | 0.667790 | 1_3:-55575531 | Msa0126470:three_prime_UTR |
| TGCCGAGTATCTATGATAAG+GGG | 0.669668 | 1_3:-55575328 | Msa0126470:three_prime_UTR |
| GAATCGGTGTATAACGAACC+CGG | 0.674412 | 1_3:+55582190 | None:intergenic |
| TTGCCAGATATAATGAACCA+GGG | 0.679888 | 1_3:-55575409 | Msa0126470:three_prime_UTR |
| GGAGATGTAATGGACAATGT+TGG | 0.686186 | 1_3:-55575544 | Msa0126470:exon |
| ACGTTCTCCAGAGACATGCA+TGG | 0.686516 | 1_3:+55575883 | None:intergenic |
| GCCAGATATAATGAACCAGG+GGG | 0.717822 | 1_3:-55575407 | Msa0126470:three_prime_UTR |
| GCAACCGTACTTGTATCCTG+AGG | 0.720068 | 1_3:+55578610 | None:intergenic |
| ACTTGCCTAGGAGTCCTGAG+GGG | 0.721508 | 1_3:+55575444 | None:intergenic |
| ACTCTCATATGCGGTCGCGG+CGG | 0.770825 | 1_3:+55582236 | None:intergenic |
| GAGACATATAGATTTCAACG+TGG | 0.809146 | 1_3:-55578950 | Msa0126470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATTATGTAATAATAAT+AGG | - | chr1_3:55576303-55576322 | Msa0126470:intron | 10.0% |
| !!! | TTTATTTTTTATTTTTCTTC+AGG | - | chr1_3:55579495-55579514 | Msa0126470:intron | 10.0% |
| !!! | TAGAAATTTTGTTTAAAAAT+TGG | - | chr1_3:55580107-55580126 | Msa0126470:intron | 10.0% |
| !!! | TTTTTATTTTTTAAAAAGCA+GGG | + | chr1_3:55581207-55581226 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTTAAAAAGC+AGG | + | chr1_3:55581208-55581227 | None:intergenic | 10.0% |
| !!! | ATTGTGTGTTTTTTTTTATT+AGG | - | chr1_3:55575749-55575768 | Msa0126470:intron | 15.0% |
| !! | ATAAATAATTAAGAGTTGAA+TGG | + | chr1_3:55576242-55576261 | None:intergenic | 15.0% |
| !! | TTCATTTAGATATATCATTT+AGG | - | chr1_3:55576672-55576691 | Msa0126470:intron | 15.0% |
| !!! | TTAGAACTATATCAAAATTT+TGG | - | chr1_3:55576695-55576714 | Msa0126470:intron | 15.0% |
| !!! | TAGAACTATATCAAAATTTT+GGG | - | chr1_3:55576696-55576715 | Msa0126470:intron | 15.0% |
| !! | TTATAAAATTGACAGTTTAT+CGG | + | chr1_3:55576850-55576869 | None:intergenic | 15.0% |
| !!! | TAAACTGTCAATTTTATAAT+AGG | - | chr1_3:55576851-55576870 | Msa0126470:intron | 15.0% |
| !! | TATATATTCCATATAGAAAA+TGG | - | chr1_3:55577703-55577722 | Msa0126470:intron | 15.0% |
| !! | ATATATTCCATATAGAAAAT+GGG | - | chr1_3:55577704-55577723 | Msa0126470:intron | 15.0% |
| !!! | AATTTCTTTTTCAATATGAA+GGG | - | chr1_3:55577744-55577763 | Msa0126470:intron | 15.0% |
| !!! | TTATTATATTGATGACTTTT+AGG | - | chr1_3:55578139-55578158 | Msa0126470:intron | 15.0% |
| !! | TTAAAATACTGGAAAATTAT+GGG | + | chr1_3:55579097-55579116 | None:intergenic | 15.0% |
| !! | AACAACAAAACATAATTTAA+TGG | + | chr1_3:55579160-55579179 | None:intergenic | 15.0% |
| !! | TTCACTTAAAATCTTATATA+TGG | + | chr1_3:55579192-55579211 | None:intergenic | 15.0% |
| !! | AATATGAAAATGAAATATCA+TGG | + | chr1_3:55579853-55579872 | None:intergenic | 15.0% |
| !!! | ACAAATTTTGAAGTTAATAT+TGG | + | chr1_3:55581300-55581319 | None:intergenic | 15.0% |
| !! | TTCATATTCATTAATTGATG+TGG | - | chr1_3:55575986-55576005 | Msa0126470:intron | 20.0% |
| !! | TCTTTAAGTATAGAGAATAT+AGG | - | chr1_3:55576069-55576088 | Msa0126470:intron | 20.0% |
| !!! | GTAAAACTATTTTACACTAA+CGG | + | chr1_3:55576102-55576121 | None:intergenic | 20.0% |
| !!! | TTTTGTCTTGTATCTTTTTT+TGG | - | chr1_3:55576346-55576365 | Msa0126470:intron | 20.0% |
| !! | ATCCATTTAAGTAAGAAAAA+TGG | - | chr1_3:55576952-55576971 | Msa0126470:intron | 20.0% |
| !! | TGGTGTAAATAATGTTAATA+TGG | - | chr1_3:55577070-55577089 | Msa0126470:intron | 20.0% |
| !! | ATTAGTAGCTTTCATTAAAT+AGG | - | chr1_3:55577199-55577218 | Msa0126470:intron | 20.0% |
| !! | AGAACAAGTAATTAATATCA+CGG | + | chr1_3:55577330-55577349 | None:intergenic | 20.0% |
| !!! | GAATTTCTTTTTCAATATGA+AGG | - | chr1_3:55577743-55577762 | Msa0126470:intron | 20.0% |
| !!! | TTTTAAACTCATAGAAAAGT+AGG | + | chr1_3:55578919-55578938 | None:intergenic | 20.0% |
| !! | AATTATAGTCAATTAGATGT+AGG | - | chr1_3:55578976-55578995 | Msa0126470:intron | 20.0% |
| !! | GTTAAAATACTGGAAAATTA+TGG | + | chr1_3:55579098-55579117 | None:intergenic | 20.0% |
| !! | ATGAATACAGATATAAGTAT+GGG | - | chr1_3:55580046-55580065 | Msa0126470:intron | 20.0% |
| !!! | AAGATTTTTATTTTCAGCTT+AGG | - | chr1_3:55580555-55580574 | Msa0126470:intron | 20.0% |
| !! | CTAACATATATCAAGTATTT+GGG | - | chr1_3:55580598-55580617 | Msa0126470:intron | 20.0% |
| !!! | AATCCTGATTGAATATTTTT+CGG | - | chr1_3:55580812-55580831 | Msa0126470:intron | 20.0% |
| !! | ATACTTGTTTACCATTATTT+GGG | + | chr1_3:55581684-55581703 | None:intergenic | 20.0% |
| !! | AATACTTGTTTACCATTATT+TGG | + | chr1_3:55581685-55581704 | None:intergenic | 20.0% |
| !! | AATAATGGTAAACAAGTATT+AGG | - | chr1_3:55581685-55581704 | Msa0126470:intron | 20.0% |
| !!! | GCAAAATTTGTTGTTAATGT+TGG | - | chr1_3:55575534-55575553 | Msa0126470:three_prime_UTR | 25.0% |
| !!! | CACCATTTTTCTTACTTAAA+TGG | + | chr1_3:55576957-55576976 | None:intergenic | 25.0% |
| ! | CATTTAAGTAAGAAAAATGG+TGG | - | chr1_3:55576955-55576974 | Msa0126470:intron | 25.0% |
| !! | ACTAATACCTTTTACCAATA+AGG | + | chr1_3:55577185-55577204 | None:intergenic | 25.0% |
| !!! | TTAAGAAGATTTTTGACTCT+TGG | - | chr1_3:55577235-55577254 | Msa0126470:intron | 25.0% |
| !!! | TAAGAAGATTTTTGACTCTT+GGG | - | chr1_3:55577236-55577255 | Msa0126470:intron | 25.0% |
| ! | GAACAAGTAATTAATATCAC+GGG | + | chr1_3:55577329-55577348 | None:intergenic | 25.0% |
| ! | GATGAATAAAGTCATTGAAA+TGG | + | chr1_3:55577393-55577412 | None:intergenic | 25.0% |
| ! | TATATACCATTGTAAAAGAG+AGG | + | chr1_3:55577529-55577548 | None:intergenic | 25.0% |
| !!! | TTATATTGATGACTTTTAGG+AGG | - | chr1_3:55578142-55578161 | Msa0126470:intron | 25.0% |
| !!! | TATATTGATGACTTTTAGGA+GGG | - | chr1_3:55578143-55578162 | Msa0126470:intron | 25.0% |
| ! | TACAATACACCAAAAATGAT+AGG | - | chr1_3:55578271-55578290 | Msa0126470:intron | 25.0% |
| ! | TTGTCCAACAAAATTAAGAA+AGG | - | chr1_3:55578451-55578470 | Msa0126470:intron | 25.0% |
| ! | TGTCCAACAAAATTAAGAAA+GGG | - | chr1_3:55578452-55578471 | Msa0126470:intron | 25.0% |
| !! | TTACATACTTTTGTAAATCC+AGG | + | chr1_3:55578571-55578590 | None:intergenic | 25.0% |
| ! | AGAATCAAGTGTTAAAATAC+TGG | + | chr1_3:55579108-55579127 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGCATTTTAAGGA+AGG | + | chr1_3:55579229-55579248 | None:intergenic | 25.0% |
| !!! | GACATTTTTTCTGCATTTTA+AGG | + | chr1_3:55579233-55579252 | None:intergenic | 25.0% |
| ! | AAGAAATTCTAATGTGAATG+AGG | + | chr1_3:55579317-55579336 | None:intergenic | 25.0% |
| ! | CATTAGAATTTCTTATCTGT+AGG | - | chr1_3:55579323-55579342 | Msa0126470:intron | 25.0% |
| ! | TTTATCATGTTCATGACATT+TGG | + | chr1_3:55579376-55579395 | None:intergenic | 25.0% |
| ! | GAACATGATAAAAGATACTA+AGG | - | chr1_3:55579384-55579403 | Msa0126470:intron | 25.0% |
| !!! | GGCAACAGAAATTTTAAAAA+GGG | + | chr1_3:55579624-55579643 | None:intergenic | 25.0% |
| !!! | TGGCAACAGAAATTTTAAAA+AGG | + | chr1_3:55579625-55579644 | None:intergenic | 25.0% |
| ! | CTAAGTTTAACTGAATCAAT+AGG | - | chr1_3:55579687-55579706 | Msa0126470:intron | 25.0% |
| ! | AAAGATCAATACTCTTCTTT+CGG | + | chr1_3:55579752-55579771 | None:intergenic | 25.0% |
| ! | TTTAGATGCTTGTATTATTG+AGG | - | chr1_3:55579805-55579824 | Msa0126470:intron | 25.0% |
| !!! | TTTTCTTTGATAGAAAGCAT+CGG | + | chr1_3:55579916-55579935 | None:intergenic | 25.0% |
| ! | CATGAATACAGATATAAGTA+TGG | - | chr1_3:55580045-55580064 | Msa0126470:intron | 25.0% |
| ! | TTTCTATTGCTGTATAACAA+TGG | + | chr1_3:55580093-55580112 | None:intergenic | 25.0% |
| !! | AACTGAATTCATAACAGTTT+TGG | - | chr1_3:55580304-55580323 | Msa0126470:CDS | 25.0% |
| ! | AGTTAGTTACAAAATCTTAG+AGG | + | chr1_3:55580379-55580398 | None:intergenic | 25.0% |
| ! | TATGAAAGATCAAAACTCTA+TGG | - | chr1_3:55580461-55580480 | Msa0126470:intron | 25.0% |
| ! | TATAAGAAAAACGCTATAGA+TGG | - | chr1_3:55580498-55580517 | Msa0126470:intron | 25.0% |
| ! | GCTAACATATATCAAGTATT+TGG | - | chr1_3:55580597-55580616 | Msa0126470:intron | 25.0% |
| !! | TATTTTCATGCATACACTAA+AGG | + | chr1_3:55580674-55580693 | None:intergenic | 25.0% |
| !! | ATCCTGATTGAATATTTTTC+GGG | - | chr1_3:55580813-55580832 | Msa0126470:intron | 25.0% |
| ! | AGAGTATGTTGAAAATGAAA+AGG | - | chr1_3:55581120-55581139 | Msa0126470:intron | 25.0% |
| ! | GAGTATGTTGAAAATGAAAA+GGG | - | chr1_3:55581121-55581140 | Msa0126470:intron | 25.0% |
| !! | TTTTATCTAAACCATTTCCA+AGG | + | chr1_3:55581257-55581276 | None:intergenic | 25.0% |
| ! | ATCTAGTTATCATGCTATAA+TGG | + | chr1_3:55581350-55581369 | None:intergenic | 25.0% |
| ! | TTATCAATCACAACATCAAA+AGG | + | chr1_3:55581446-55581465 | None:intergenic | 25.0% |
| !! | TAAATATATCTGCATGCTTT+TGG | - | chr1_3:55581474-55581493 | Msa0126470:intron | 25.0% |
| ! | TACTTGTTTACCATTATTTG+GGG | + | chr1_3:55581683-55581702 | None:intergenic | 25.0% |
| ! | TCTGTTCATCAATGTAAAAT+TGG | + | chr1_3:55581845-55581864 | None:intergenic | 25.0% |
| TGAAGAATTGTGTGGAAATT+GGG | + | chr1_3:55575511-55575530 | None:intergenic | 30.0% | |
| TTGAAGAATTGTGTGGAAAT+TGG | + | chr1_3:55575512-55575531 | None:intergenic | 30.0% | |
| TTTGCAATTGAAGAATTGTG+TGG | + | chr1_3:55575519-55575538 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTGATACACAGA+TGG | - | chr1_3:55575553-55575572 | Msa0126470:exon | 30.0% |
| ! | GTATATAATTTGATAGCTCC+TGG | - | chr1_3:55575605-55575624 | Msa0126470:CDS | 30.0% |
| AAGAACTTTCCTGATAGTAA+CGG | + | chr1_3:55575645-55575664 | None:intergenic | 30.0% | |
| TGAACGTGTTAAACTCAAAT+TGG | - | chr1_3:55575694-55575713 | Msa0126470:intron | 30.0% | |
| GTCGTATTCATTAATTGATG+TGG | + | chr1_3:55575954-55575973 | None:intergenic | 30.0% | |
| TCCAATAAGAATCAAGTATG+TGG | - | chr1_3:55576129-55576148 | Msa0126470:intron | 30.0% | |
| ACCACATACTTGATTCTTAT+TGG | + | chr1_3:55576133-55576152 | None:intergenic | 30.0% | |
| !! | ATGTGGTAGTGGTTATAAAT+TGG | - | chr1_3:55576146-55576165 | Msa0126470:intron | 30.0% |
| !! | TGTGGTAGTGGTTATAAATT+GGG | - | chr1_3:55576147-55576166 | Msa0126470:intron | 30.0% |
| GGTTATAAATTGGGATTATG+TGG | - | chr1_3:55576156-55576175 | Msa0126470:intron | 30.0% | |
| !! | GCGATTTGATGAGTTTTAAT+TGG | - | chr1_3:55576178-55576197 | Msa0126470:intron | 30.0% |
| TGAATGGTTATACATTGTCT+GGG | + | chr1_3:55576226-55576245 | None:intergenic | 30.0% | |
| TTGAATGGTTATACATTGTC+TGG | + | chr1_3:55576227-55576246 | None:intergenic | 30.0% | |
| ! | CCTACAAAGTTTTACATTGT+CGG | - | chr1_3:55576263-55576282 | Msa0126470:intron | 30.0% |
| !!! | TTGTATCTTTTTTTGGTTCC+AGG | - | chr1_3:55576353-55576372 | Msa0126470:intron | 30.0% |
| !!! | TGTATCTTTTTTTGGTTCCA+GGG | - | chr1_3:55576354-55576373 | Msa0126470:intron | 30.0% |
| !! | GTAACTCAAGTTCTAAAGTA+TGG | + | chr1_3:55576541-55576560 | None:intergenic | 30.0% |
| ! | AGTAGTTCTATGAATTCACA+TGG | + | chr1_3:55576905-55576924 | None:intergenic | 30.0% |
| TTTCTTACTTAAATGGATGC+AGG | + | chr1_3:55576950-55576969 | None:intergenic | 30.0% | |
| AGGATCTGCAAAATAAACAA+AGG | + | chr1_3:55577106-55577125 | None:intergenic | 30.0% | |
| TTTACCAATAAGGAGGATAT+GGG | + | chr1_3:55577175-55577194 | None:intergenic | 30.0% | |
| ! | TTTTACCAATAAGGAGGATA+TGG | + | chr1_3:55577176-55577195 | None:intergenic | 30.0% |
| ATATCCTCCTTATTGGTAAA+AGG | - | chr1_3:55577175-55577194 | Msa0126470:intron | 30.0% | |
| ! | AATACCTTTTACCAATAAGG+AGG | + | chr1_3:55577182-55577201 | None:intergenic | 30.0% |
| TAATTAATATCACGGGTTTG+TGG | + | chr1_3:55577322-55577341 | None:intergenic | 30.0% | |
| CTTATTCAAAGCCTACAAAA+AGG | + | chr1_3:55577605-55577624 | None:intergenic | 30.0% | |
| ! | TCACAAACCCATTTTCTATA+TGG | + | chr1_3:55577714-55577733 | None:intergenic | 30.0% |
| AACCAAGTTATTCAGATTTG+AGG | + | chr1_3:55577823-55577842 | None:intergenic | 30.0% | |
| ATCAGCTTATGGTGATTTAA+GGG | + | chr1_3:55577921-55577940 | None:intergenic | 30.0% | |
| AATCAGCTTATGGTGATTTA+AGG | + | chr1_3:55577922-55577941 | None:intergenic | 30.0% | |
| TAAATCACCATAAGCTGATT+TGG | - | chr1_3:55577922-55577941 | Msa0126470:intron | 30.0% | |
| ! | AAATCACCATAAGCTGATTT+GGG | - | chr1_3:55577923-55577942 | Msa0126470:intron | 30.0% |
| TCAGTACATGGGTATAATAT+TGG | + | chr1_3:55578041-55578060 | None:intergenic | 30.0% | |
| AATATATCCAGTAGCATGAT+AGG | - | chr1_3:55578083-55578102 | Msa0126470:CDS | 30.0% | |
| GTCCAACAAAATTAAGAAAG+GGG | - | chr1_3:55578453-55578472 | Msa0126470:intron | 30.0% | |
| ! | TTCCCCTTTCTTAATTTTGT+TGG | + | chr1_3:55578458-55578477 | None:intergenic | 30.0% |
| AGGGGAATGTACAAATTTAA+TGG | - | chr1_3:55578471-55578490 | Msa0126470:intron | 30.0% | |
| TATTCCCTGTTCTTTCTATT+TGG | - | chr1_3:55578592-55578611 | Msa0126470:intron | 30.0% | |
| ATTCCCTGTTCTTTCTATTT+GGG | - | chr1_3:55578593-55578612 | Msa0126470:intron | 30.0% | |
| AAACCCAAATAGAAAGAACA+GGG | + | chr1_3:55578599-55578618 | None:intergenic | 30.0% | |
| !!! | CGTGACTTGTTTTCAATAAT+AGG | + | chr1_3:55578822-55578841 | None:intergenic | 30.0% |
| !!! | TATGCAACGAGTATTTTTTG+AGG | - | chr1_3:55579036-55579055 | Msa0126470:intron | 30.0% |
| !!! | TCAAGTTGTCCCATTTTTTT+AGG | - | chr1_3:55579130-55579149 | Msa0126470:intron | 30.0% |
| AATGGCAAGCCTAAAAAAAT+GGG | + | chr1_3:55579142-55579161 | None:intergenic | 30.0% | |
| TAATGGCAAGCCTAAAAAAA+TGG | + | chr1_3:55579143-55579162 | None:intergenic | 30.0% | |
| !!! | ATTCACACACTGTTGTTTTT+TGG | - | chr1_3:55579264-55579283 | Msa0126470:intron | 30.0% |
| ! | GCATAGTTTAAAAGAGGTTT+TGG | - | chr1_3:55579345-55579364 | Msa0126470:intron | 30.0% |
| GCAAAAAATGTCTAGTACTT+TGG | + | chr1_3:55579433-55579452 | None:intergenic | 30.0% | |
| TGTTTCAGACTCAACTAAAT+AGG | + | chr1_3:55579472-55579491 | None:intergenic | 30.0% | |
| ATGACATGCTTTCAAATGTA+AGG | - | chr1_3:55579539-55579558 | Msa0126470:intron | 30.0% | |
| CTTTACTTTGCCTGTATTTA+TGG | - | chr1_3:55579583-55579602 | Msa0126470:intron | 30.0% | |
| GACATTTCAACCATAAATAC+AGG | + | chr1_3:55579596-55579615 | None:intergenic | 30.0% | |
| TGAACCAATTCTCAAATTAG+TGG | + | chr1_3:55579645-55579664 | None:intergenic | 30.0% | |
| !! | TTTCTTTGATAGAAAGCATC+GGG | + | chr1_3:55579915-55579934 | None:intergenic | 30.0% |
| ! | CAGATATAAGTATGGGTTAA+AGG | - | chr1_3:55580053-55580072 | Msa0126470:intron | 30.0% |
| !!! | AAATTGGCTATTTTGATGCT+AGG | - | chr1_3:55580123-55580142 | Msa0126470:intron | 30.0% |
| CATAGGTCATAAATTGATAG+AGG | - | chr1_3:55580210-55580229 | Msa0126470:intron | 30.0% | |
| AACTGTTATGAATTCAGTTC+TGG | + | chr1_3:55580303-55580322 | None:intergenic | 30.0% | |
| ! | AATAGAAATCTAGCTAGCTT+AGG | - | chr1_3:55580332-55580351 | Msa0126470:CDS | 30.0% |
| !! | TTTATTTTCAGCTTAGGCAT+TGG | - | chr1_3:55580561-55580580 | Msa0126470:intron | 30.0% |
| ! | TGAGGTGACATTTAGTTTAA+GGG | + | chr1_3:55580745-55580764 | None:intergenic | 30.0% |
| ! | TTGAGGTGACATTTAGTTTA+AGG | + | chr1_3:55580746-55580765 | None:intergenic | 30.0% |
| TATCTGAAAATGCGACATTT+AGG | + | chr1_3:55580786-55580805 | None:intergenic | 30.0% | |
| !!! | TGATTGAATATTTTTCGGGT+GGG | - | chr1_3:55580817-55580836 | Msa0126470:intron | 30.0% |
| TTATGGAACAAAACATGTTG+AGG | - | chr1_3:55580861-55580880 | Msa0126470:intron | 30.0% | |
| TCAACATACTCTAATTCATG+TGG | + | chr1_3:55581112-55581131 | None:intergenic | 30.0% | |
| !! | TTAACAAACTTTTTCCTGGT+AGG | + | chr1_3:55581519-55581538 | None:intergenic | 30.0% |
| !! | CAAGTTAACAAACTTTTTCC+TGG | + | chr1_3:55581523-55581542 | None:intergenic | 30.0% |
| !! | CAGGAAAAAGTTTGTTAACT+TGG | - | chr1_3:55581521-55581540 | Msa0126470:intron | 30.0% |
| TAACTTGGTCAATTCAGTTA+AGG | - | chr1_3:55581536-55581555 | Msa0126470:intron | 30.0% | |
| !! | TTTCTGATTTCTTTAGAGTG+TGG | - | chr1_3:55581624-55581643 | Msa0126470:intron | 30.0% |
| !! | TTCTGATTTCTTTAGAGTGT+GGG | - | chr1_3:55581625-55581644 | Msa0126470:intron | 30.0% |
| ATGGTAAACAAGTATTAGGA+TGG | - | chr1_3:55581689-55581708 | Msa0126470:intron | 30.0% | |
| ! | GATTTTACACTTAAATACCC+AGG | + | chr1_3:55582184-55582203 | None:intergenic | 30.0% |
| GTATCCTAAAAAGAAACGAA+TGG | + | chr1_3:55582244-55582263 | None:intergenic | 30.0% | |
| !!! | TCGTTATACACCGATTCTTT+TGG | - | chr1_3:55575288-55575307 | Msa0126470:three_prime_UTR | 35.0% |
| ATTCGAAGAGAAAACTGATC+TGG | + | chr1_3:55575363-55575382 | None:intergenic | 35.0% | |
| TTGATGTGGCAATACATCAT+TGG | + | chr1_3:55575940-55575959 | None:intergenic | 35.0% | |
| AAGAATCAAGTATGTGGTAG+TGG | - | chr1_3:55576135-55576154 | Msa0126470:intron | 35.0% | |
| CCGACAATGTAAAACTTTGT+AGG | + | chr1_3:55576266-55576285 | None:intergenic | 35.0% | |
| TCTAGAGAATGAACATGTCA+AGG | - | chr1_3:55576428-55576447 | Msa0126470:intron | 35.0% | |
| TGTCAAGGTAGTTAGTTAAC+AGG | - | chr1_3:55576443-55576462 | Msa0126470:intron | 35.0% | |
| !! | CTTTAGAACTTGAGTTACAG+CGG | - | chr1_3:55576543-55576562 | Msa0126470:intron | 35.0% |
| GATAACCAATAACATACCAG+AGG | + | chr1_3:55576828-55576847 | None:intergenic | 35.0% | |
| ATGAATTCACATGGTTTCCA+TGG | + | chr1_3:55576896-55576915 | None:intergenic | 35.0% | |
| ! | TCGGCTTGTAATATGATTGT+TGG | - | chr1_3:55577050-55577069 | Msa0126470:intron | 35.0% |
| TCTGCATTTGATAGAGTAGT+AGG | - | chr1_3:55577259-55577278 | Msa0126470:intron | 35.0% | |
| TGATAGAGTAGTAGGATTGT+TGG | - | chr1_3:55577267-55577286 | Msa0126470:intron | 35.0% | |
| ATTCAAAGCCTACAAAAAGG+AGG | + | chr1_3:55577602-55577621 | None:intergenic | 35.0% | |
| !! | GTTCTTTGAGAATGTTTTGC+AGG | - | chr1_3:55577624-55577643 | Msa0126470:intron | 35.0% |
| CATGAGAAATACAAGTCCTT+GGG | + | chr1_3:55577659-55577678 | None:intergenic | 35.0% | |
| ! | ATTCAGATTTGAGGAGTACA+TGG | + | chr1_3:55577814-55577833 | None:intergenic | 35.0% |
| CTCCTCAAATCTGAATAACT+TGG | - | chr1_3:55577818-55577837 | Msa0126470:intron | 35.0% | |
| TCAGCTTATGGTGATTTAAG+GGG | + | chr1_3:55577920-55577939 | None:intergenic | 35.0% | |
| ATAAACATCTCACGCTACAT+GGG | + | chr1_3:55578009-55578028 | None:intergenic | 35.0% | |
| !! | ACTTTACCGTTACCTTGTTT+TGG | + | chr1_3:55578174-55578193 | None:intergenic | 35.0% |
| AGCCTCTTGTGTAAAATACA+GGG | - | chr1_3:55578238-55578257 | Msa0126470:intron | 35.0% | |
| ! | TACCCTGTATTTTACACAAG+AGG | + | chr1_3:55578243-55578262 | None:intergenic | 35.0% |
| CTTGTGTAAAATACAGGGTA+AGG | - | chr1_3:55578243-55578262 | Msa0126470:intron | 35.0% | |
| GAAAAGTCAAAGCCATCAAA+GGG | + | chr1_3:55578345-55578364 | None:intergenic | 35.0% | |
| AGAAAAGTCAAAGCCATCAA+AGG | + | chr1_3:55578346-55578365 | None:intergenic | 35.0% | |
| TGCTTCTTTGTTACTCAAAG+AGG | - | chr1_3:55578367-55578386 | Msa0126470:intron | 35.0% | |
| GAGACATATAGATTTCAACG+TGG | - | chr1_3:55578522-55578541 | Msa0126470:intron | 35.0% | |
| GAAACCCAAATAGAAAGAAC+AGG | + | chr1_3:55578600-55578619 | None:intergenic | 35.0% | |
| CATTAAGAAATGTGTGTGTG+TGG | + | chr1_3:55578655-55578674 | None:intergenic | 35.0% | |
| GCAAAAGCTTAGACAAGATT+TGG | - | chr1_3:55578689-55578708 | Msa0126470:CDS | 35.0% | |
| TATGTCACTATTTCCGTTAC+AGG | - | chr1_3:55578746-55578765 | Msa0126470:intron | 35.0% | |
| !! | GTTTCACCGTCACTTATTTT+TGG | - | chr1_3:55578773-55578792 | Msa0126470:intron | 35.0% |
| !!! | TATTTTTGGAGGCAGAAAGA+AGG | - | chr1_3:55578787-55578806 | Msa0126470:intron | 35.0% |
| ! | GAGTTTAAAAAAGCCTTGTG+AGG | - | chr1_3:55578929-55578948 | Msa0126470:CDS | 35.0% |
| TACAACAGCATATCACATCA+GGG | + | chr1_3:55579018-55579037 | None:intergenic | 35.0% | |
| ATACAACAGCATATCACATC+AGG | + | chr1_3:55579019-55579038 | None:intergenic | 35.0% | |
| ! | TTTAAGGAAGGCATGAGATT+TGG | + | chr1_3:55579217-55579236 | None:intergenic | 35.0% |
| !!! | ACACACTGTTGTTTTTTGGA+TGG | - | chr1_3:55579268-55579287 | Msa0126470:intron | 35.0% |
| CTGTAGGCATAGTTTAAAAG+AGG | - | chr1_3:55579339-55579358 | Msa0126470:intron | 35.0% | |
| !!! | GTCTAGTACTTTGGTTTTGA+CGG | + | chr1_3:55579424-55579443 | None:intergenic | 35.0% |
| GTTGCCACTAATTTGAGAAT+TGG | - | chr1_3:55579638-55579657 | Msa0126470:intron | 35.0% | |
| GTAACTTGGGTTATAAACAC+TGG | + | chr1_3:55579893-55579912 | None:intergenic | 35.0% | |
| ! | ATTGTATTTTCCCCTTTACC+AGG | - | chr1_3:55579950-55579969 | Msa0126470:intron | 35.0% |
| ! | TTGTATTTTCCCCTTTACCA+GGG | - | chr1_3:55579951-55579970 | Msa0126470:intron | 35.0% |
| ! | AAAGCATCACAAGATCTCAT+AGG | - | chr1_3:55580193-55580212 | Msa0126470:intron | 35.0% |
| ! | TGGTCTATCTCATTGATTGA+AGG | - | chr1_3:55580518-55580537 | Msa0126470:intron | 35.0% |
| ! | TCATTGATTGAAGGCAAAAG+TGG | - | chr1_3:55580527-55580546 | Msa0126470:intron | 35.0% |
| ! | TTGGGTATCAAGTACTGTAT+CGG | - | chr1_3:55580616-55580635 | Msa0126470:intron | 35.0% |
| TATCGGTATCTACACTGTAT+CGG | - | chr1_3:55580633-55580652 | Msa0126470:intron | 35.0% | |
| CATACACTAAAGGTAAACCT+AGG | + | chr1_3:55580664-55580683 | None:intergenic | 35.0% | |
| CGACAACTAGTAAAAACATC+TGG | + | chr1_3:55580708-55580727 | None:intergenic | 35.0% | |
| TTAGTTTAAGGGAGAAACAC+AGG | + | chr1_3:55580734-55580753 | None:intergenic | 35.0% | |
| CACCCGAAAAATATTCAATC+AGG | + | chr1_3:55580818-55580837 | None:intergenic | 35.0% | |
| !!! | CTGATTGAATATTTTTCGGG+TGG | - | chr1_3:55580816-55580835 | Msa0126470:intron | 35.0% |
| ! | TCATTGCAGATTCTCTTTTC+AGG | - | chr1_3:55580917-55580936 | Msa0126470:CDS | 35.0% |
| ! | ATCTAGTTCATGAGAAATGC+TGG | - | chr1_3:55580984-55581003 | Msa0126470:intron | 35.0% |
| TAGAATCATCAAACAGAGAG+TGG | - | chr1_3:55581065-55581084 | Msa0126470:CDS | 35.0% | |
| AGAATCATCAAACAGAGAGT+GGG | - | chr1_3:55581066-55581085 | Msa0126470:CDS | 35.0% | |
| ATGTGGATCCACTAAATCAT+GGG | + | chr1_3:55581095-55581114 | None:intergenic | 35.0% | |
| ATGCTATAGCAACATACTGT+TGG | + | chr1_3:55581150-55581169 | None:intergenic | 35.0% | |
| ! | ATTTGGGATGTAATGCAATC+CGG | - | chr1_3:55581412-55581431 | Msa0126470:intron | 35.0% |
| !!! | ACATCAAAAGGAGCATTTTC+CGG | + | chr1_3:55581434-55581453 | None:intergenic | 35.0% |
| !! | ATCTGCATGCTTTTGGTTAT+AGG | - | chr1_3:55581481-55581500 | Msa0126470:intron | 35.0% |
| GTCAATTCAGTTAAGGATTC+TGG | - | chr1_3:55581543-55581562 | Msa0126470:intron | 35.0% | |
| AATTCAGTTAAGGATTCTGG+AGG | - | chr1_3:55581546-55581565 | Msa0126470:intron | 35.0% | |
| CATGCATGGATGAAAATACA+TGG | + | chr1_3:55581578-55581597 | None:intergenic | 35.0% | |
| !! | ATTTGGGGTTTTCAGTTCAT+TGG | + | chr1_3:55581668-55581687 | None:intergenic | 35.0% |
| GAACTGAAAACCCCAAATAA+TGG | - | chr1_3:55581670-55581689 | Msa0126470:intron | 35.0% | |
| TTTGCCAGATATAATGAACC+AGG | - | chr1_3:55582062-55582081 | Msa0126470:five_prime_UTR | 35.0% | |
| TTGCCAGATATAATGAACCA+GGG | - | chr1_3:55582063-55582082 | Msa0126470:five_prime_UTR | 35.0% | |
| ATGCCGAGTATCTATGATAA+GGG | - | chr1_3:55582143-55582162 | Msa0126470:five_prime_UTR | 35.0% | |
| TCAAAATTCCCATCACTACT+TGG | - | chr1_3:55582210-55582229 | Msa0126470:five_prime_UTR | 35.0% | |
| ! | CACTCCATTCGTTTCTTTTT+AGG | - | chr1_3:55582237-55582256 | Msa0126470:five_prime_UTR | 35.0% |
| CGGTTCTTAACTCTCATATG+CGG | + | chr1_3:55575248-55575267 | None:intergenic | 40.0% | |
| TGTATAACGAACCCGGTTTA+GGG | + | chr1_3:55575278-55575297 | None:intergenic | 40.0% | |
| AATTGAACCTTAACGCTTCC+AGG | + | chr1_3:55575481-55575500 | None:intergenic | 40.0% | |
| CATAGATCATCTGAATCCAC+TGG | + | chr1_3:55575581-55575600 | None:intergenic | 40.0% | |
| ! | CAGTGGATTCAGATGATCTA+TGG | - | chr1_3:55575579-55575598 | Msa0126470:CDS | 40.0% |
| GTTCTTAGAGAAGCAGCTAA+TGG | - | chr1_3:55575659-55575678 | Msa0126470:intron | 40.0% | |
| TATATACACTGTCGCCGTAA+TGG | - | chr1_3:55575780-55575799 | Msa0126470:intron | 40.0% | |
| ACACAGACTCACAACCATTA+CGG | + | chr1_3:55575797-55575816 | None:intergenic | 40.0% | |
| ! | GGTGTGGATTATGACAAAGA+AGG | - | chr1_3:55576375-55576394 | Msa0126470:intron | 40.0% |
| ! | TTTGACTACTTGCTGCAGAT+AGG | - | chr1_3:55576509-55576528 | Msa0126470:intron | 40.0% |
| ATTACCTTCCTGAGCACAAA+AGG | + | chr1_3:55576569-55576588 | None:intergenic | 40.0% | |
| ! | GATTGTGTTTTGCCTTTCGT+AGG | - | chr1_3:55576763-55576782 | Msa0126470:intron | 40.0% |
| ! | TGTCTGGGATTCTTATGCTT+TGG | - | chr1_3:55576787-55576806 | Msa0126470:intron | 40.0% |
| TTCCTACCAATATGTGTCCA+TGG | - | chr1_3:55576876-55576895 | Msa0126470:intron | 40.0% | |
| TTCCATGGACACATATTGGT+AGG | + | chr1_3:55576881-55576900 | None:intergenic | 40.0% | |
| TGGTTTCCATGGACACATAT+TGG | + | chr1_3:55576885-55576904 | None:intergenic | 40.0% | |
| AATCACAGTCCACATCTGTT+CGG | - | chr1_3:55577031-55577050 | Msa0126470:intron | 40.0% | |
| TATTACAAGCCGAACAGATG+TGG | + | chr1_3:55577043-55577062 | None:intergenic | 40.0% | |
| TTAGCCCATATCCTCCTTAT+TGG | - | chr1_3:55577168-55577187 | Msa0126470:intron | 40.0% | |
| ! | TCAGGCGTGTTTGATTTATG+TGG | - | chr1_3:55577292-55577311 | Msa0126470:intron | 40.0% |
| ! | CAGGCGTGTTTGATTTATGT+GGG | - | chr1_3:55577293-55577312 | Msa0126470:intron | 40.0% |
| CTTCAATTCCTCGTAAGCAT+GGG | - | chr1_3:55577463-55577482 | Msa0126470:intron | 40.0% | |
| ! | TGTCTGCCTCTCTTTTACAA+TGG | - | chr1_3:55577520-55577539 | Msa0126470:intron | 40.0% |
| !! | GGAGGACAATGCTTTAGAAA+TGG | + | chr1_3:55577584-55577603 | None:intergenic | 40.0% |
| ! | AGCATTGTCCTCCTTTTTGT+AGG | - | chr1_3:55577591-55577610 | Msa0126470:intron | 40.0% |
| TTGCAGGTAAATTCTTCCCA+AGG | - | chr1_3:55577640-55577659 | Msa0126470:intron | 40.0% | |
| GCATGAGAAATACAAGTCCT+TGG | + | chr1_3:55577660-55577679 | None:intergenic | 40.0% | |
| CTAGTGACTAAAGAAGGAGA+AGG | + | chr1_3:55577869-55577888 | None:intergenic | 40.0% | |
| TTGGCACTAGTGACTAAAGA+AGG | + | chr1_3:55577875-55577894 | None:intergenic | 40.0% | |
| ATGAAGTCGCATCGTATCAT+TGG | + | chr1_3:55577894-55577913 | None:intergenic | 40.0% | |
| CATAAACATCTCACGCTACA+TGG | + | chr1_3:55578010-55578029 | None:intergenic | 40.0% | |
| CGTGAGATGTTTATGCTACA+TGG | - | chr1_3:55578015-55578034 | Msa0126470:intron | 40.0% | |
| !!! | TACCGTTACCTTGTTTTGGA+GGG | + | chr1_3:55578170-55578189 | None:intergenic | 40.0% |
| !!! | TTACCGTTACCTTGTTTTGG+AGG | + | chr1_3:55578171-55578190 | None:intergenic | 40.0% |
| CAGCCTCTTGTGTAAAATAC+AGG | - | chr1_3:55578237-55578256 | Msa0126470:intron | 40.0% | |
| GTGTAAAATACAGGGTAAGG+CGG | - | chr1_3:55578246-55578265 | Msa0126470:intron | 40.0% | |
| GTCTCAAGAATGCCTAAAAC+AGG | + | chr1_3:55578507-55578526 | None:intergenic | 40.0% | |
| !!! | TCACCGTCACTTATTTTTGG+AGG | - | chr1_3:55578776-55578795 | Msa0126470:intron | 40.0% |
| CTGCCTCCAAAAATAAGTGA+CGG | + | chr1_3:55578782-55578801 | None:intergenic | 40.0% | |
| CAAATGCTAGTTACCTCACA+AGG | + | chr1_3:55578945-55578964 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGGATGGACTTTGC+TGG | - | chr1_3:55579278-55579297 | Msa0126470:intron | 40.0% |
| ! | TCTTCAGGTTCGAATTCTGA+AGG | - | chr1_3:55579510-55579529 | Msa0126470:intron | 40.0% |
| !! | TAGAAAGCATCGGGTAACTT+GGG | + | chr1_3:55579906-55579925 | None:intergenic | 40.0% |
| !! | ATAGAAAGCATCGGGTAACT+TGG | + | chr1_3:55579907-55579926 | None:intergenic | 40.0% |
| !! | TTCAGTTCTGGACAGTTACA+TGG | + | chr1_3:55580291-55580310 | None:intergenic | 40.0% |
| ! | GATTCATCACGTGCTTGTTA+TGG | - | chr1_3:55580844-55580863 | Msa0126470:intron | 40.0% |
| GAATCATCAAACAGAGAGTG+GGG | - | chr1_3:55581067-55581086 | Msa0126470:CDS | 40.0% | |
| TGTGGATCCACTAAATCATG+GGG | + | chr1_3:55581094-55581113 | None:intergenic | 40.0% | |
| CATGTGGATCCACTAAATCA+TGG | + | chr1_3:55581096-55581115 | None:intergenic | 40.0% | |
| GTATATTGCTGTGACATCCT+TGG | - | chr1_3:55581237-55581256 | Msa0126470:intron | 40.0% | |
| ! | TGCTTGTTAGCTTGGGATTT+GGG | - | chr1_3:55581396-55581415 | Msa0126470:intron | 40.0% |
| ! | TTTTCATCCATGCATGTCTC+TGG | - | chr1_3:55581582-55581601 | Msa0126470:intron | 40.0% |
| CAAAAAGTGGGAAGGAAGAA+AGG | + | chr1_3:55581737-55581756 | None:intergenic | 40.0% | |
| !!! | TCTTCCTTCCCACTTTTTGT+TGG | - | chr1_3:55581738-55581757 | Msa0126470:intron | 40.0% |
| !!! | CTTCCTTCCCACTTTTTGTT+GGG | - | chr1_3:55581739-55581758 | Msa0126470:intron | 40.0% |
| !!! | TTCCTTCCCACTTTTTGTTG+GGG | - | chr1_3:55581740-55581759 | Msa0126470:intron | 40.0% |
| ACAGAACTAGAGCAGATAAG+TGG | - | chr1_3:55581860-55581879 | Msa0126470:CDS | 40.0% | |
| GTGGTATTGCTGCAATTCTT+CGG | - | chr1_3:55581879-55581898 | Msa0126470:CDS | 40.0% | |
| TCGAAGACATGGAGATGTAA+TGG | - | chr1_3:55581918-55581937 | Msa0126470:intron | 40.0% | |
| !! | GGAGATGTAATGGACAATGT+TGG | - | chr1_3:55581928-55581947 | Msa0126470:intron | 40.0% |
| ACAATGTTGGTCAAGCAAGT+CGG | - | chr1_3:55581941-55581960 | Msa0126470:intron | 40.0% | |
| TGCCAGATATAATGAACCAG+GGG | - | chr1_3:55582064-55582083 | Msa0126470:five_prime_UTR | 40.0% | |
| GATGCCGAGTATCTATGATA+AGG | - | chr1_3:55582142-55582161 | Msa0126470:five_prime_UTR | 40.0% | |
| TGCCGAGTATCTATGATAAG+GGG | - | chr1_3:55582144-55582163 | Msa0126470:five_prime_UTR | 40.0% | |
| CACCCCTTATCATAGATACT+CGG | + | chr1_3:55582149-55582168 | None:intergenic | 40.0% | |
| GAGTATCTATGATAAGGGGT+GGG | - | chr1_3:55582148-55582167 | Msa0126470:five_prime_UTR | 40.0% | |
| AGTGCTAACCAAGTAGTGAT+GGG | + | chr1_3:55582221-55582240 | None:intergenic | 40.0% | |
| TTAACTCTCATATGCGGTCG+CGG | + | chr1_3:55575242-55575261 | None:intergenic | 45.0% | |
| AACCGAACGTTTCCCTAAAC+CGG | - | chr1_3:55575263-55575282 | Msa0126470:three_prime_UTR | 45.0% | |
| GTGTATAACGAACCCGGTTT+AGG | + | chr1_3:55575279-55575298 | None:intergenic | 45.0% | |
| GAATCGGTGTATAACGAACC+CGG | + | chr1_3:55575285-55575304 | None:intergenic | 45.0% | |
| GCACGGAAGTCCAAAAGAAT+CGG | + | chr1_3:55575301-55575320 | None:intergenic | 45.0% | |
| AGTGTCAAATCCGGTTGAAC+CGG | - | chr1_3:55575332-55575351 | Msa0126470:three_prime_UTR | 45.0% | |
| CGAAAAGACTTTGTGCGCAA+TGG | - | chr1_3:55575454-55575473 | Msa0126470:three_prime_UTR | 45.0% | |
| AGCTCCTGGTGATTCAATCA+TGG | - | chr1_3:55575619-55575638 | Msa0126470:intron | 45.0% | |
| CAATCATGGCCGTTACTATC+AGG | - | chr1_3:55575633-55575652 | Msa0126470:intron | 45.0% | |
| CTTAGAGAAGCAGCTAATGG+TGG | - | chr1_3:55575662-55575681 | Msa0126470:intron | 45.0% | |
| !!! | CTTTTTTTGGTTCCAGGGTG+TGG | - | chr1_3:55576359-55576378 | Msa0126470:intron | 45.0% |
| CTTTGTCATAATCCACACCC+TGG | + | chr1_3:55576374-55576393 | None:intergenic | 45.0% | |
| TTTGCCTTTCGTAGGATGTC+TGG | - | chr1_3:55576771-55576790 | Msa0126470:intron | 45.0% | |
| TTGCCTTTCGTAGGATGTCT+GGG | - | chr1_3:55576772-55576791 | Msa0126470:intron | 45.0% | |
| AATCCCAGACATCCTACGAA+AGG | + | chr1_3:55576778-55576797 | None:intergenic | 45.0% | |
| CTGGGATTCTTATGCTTTGG+AGG | - | chr1_3:55576790-55576809 | Msa0126470:intron | 45.0% | |
| ! | GTAGTAGGATTGTTGGTGTC+AGG | - | chr1_3:55577274-55577293 | Msa0126470:intron | 45.0% |
| GTATGACTGTTACTCGTTCG+CGG | - | chr1_3:55577433-55577452 | Msa0126470:intron | 45.0% | |
| GCTTCAATTCCTCGTAAGCA+TGG | - | chr1_3:55577462-55577481 | Msa0126470:intron | 45.0% | |
| !! | TCACCATAAGCTGATTTGGG+TGG | - | chr1_3:55577926-55577945 | Msa0126470:intron | 45.0% |
| !! | GGGTGGCTCTAGATCTAAAT+TGG | - | chr1_3:55577943-55577962 | Msa0126470:CDS | 45.0% |
| GTATGGGACTGACATTAAGG+CGG | + | chr1_3:55577987-55578006 | None:intergenic | 45.0% | |
| TGGGTATGGGACTGACATTA+AGG | + | chr1_3:55577990-55578009 | None:intergenic | 45.0% | |
| ATCTCACGCTACATGGGTAT+GGG | + | chr1_3:55578003-55578022 | None:intergenic | 45.0% | |
| GACACACATGCTCAGTACAT+GGG | + | chr1_3:55578052-55578071 | None:intergenic | 45.0% | |
| AGACACACATGCTCAGTACA+TGG | + | chr1_3:55578053-55578072 | None:intergenic | 45.0% | |
| GACCCTCCAAAACAAGGTAA+CGG | - | chr1_3:55578165-55578184 | Msa0126470:intron | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr1_3:55578192-55578211 | Msa0126470:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_3:55578232-55578251 | None:intergenic | 45.0% |
| ! | GGAAGGGGTCCTATCATTTT+TGG | + | chr1_3:55578283-55578302 | None:intergenic | 45.0% |
| AAAATGATAGGACCCCTTCC+CGG | - | chr1_3:55578283-55578302 | Msa0126470:intron | 45.0% | |
| ! | GGATTCTGCTGTCCTGTTTT+AGG | - | chr1_3:55578492-55578511 | Msa0126470:intron | 45.0% |
| TGTGCTGTAATTGCAAGTCC+TGG | - | chr1_3:55578550-55578569 | Msa0126470:intron | 45.0% | |
| CGGTGAAACTGATCCTGTAA+CGG | + | chr1_3:55578762-55578781 | None:intergenic | 45.0% | |
| ACGACCTCAGGATACAAGTA+CGG | - | chr1_3:55578858-55578877 | Msa0126470:intron | 45.0% | |
| !! | TTTTGGATGGACTTTGCTGG+TGG | - | chr1_3:55579281-55579300 | Msa0126470:intron | 45.0% |
| AGATACTAAGGCAGCACAAG+AGG | - | chr1_3:55579396-55579415 | Msa0126470:intron | 45.0% | |
| TCAACTAACCTTCAGCGAGT+TGG | - | chr1_3:55580250-55580269 | Msa0126470:intron | 45.0% | |
| ! | ACACTGTATCGGTATCTCCT+AGG | - | chr1_3:55580644-55580663 | Msa0126470:intron | 45.0% |
| TCACCTCAAAGTCGTGAAGA+TGG | - | chr1_3:55580757-55580776 | Msa0126470:intron | 45.0% | |
| TAGCCATCTTCACGACTTTG+AGG | + | chr1_3:55580763-55580782 | None:intergenic | 45.0% | |
| !!! | GAATATTTTTCGGGTGGGAC+AGG | - | chr1_3:55580822-55580841 | Msa0126470:intron | 45.0% |
| GTGGATCCACTAAATCATGG+GGG | + | chr1_3:55581093-55581112 | None:intergenic | 45.0% | |
| TGCTGTGACATCCTTGGAAA+TGG | - | chr1_3:55581243-55581262 | Msa0126470:intron | 45.0% | |
| ! | TACCATCCTGCTTGTTAGCT+TGG | - | chr1_3:55581388-55581407 | Msa0126470:intron | 45.0% |
| ! | ACCATCCTGCTTGTTAGCTT+GGG | - | chr1_3:55581389-55581408 | Msa0126470:intron | 45.0% |
| CAAATCCCAAGCTAACAAGC+AGG | + | chr1_3:55581397-55581416 | None:intergenic | 45.0% | |
| ! | CTGCTTGTTAGCTTGGGATT+TGG | - | chr1_3:55581395-55581414 | Msa0126470:intron | 45.0% |
| GGAATGCAGATATACCTACC+AGG | - | chr1_3:55581502-55581521 | Msa0126470:intron | 45.0% | |
| GTGGGAAGGAAGAAAGGAAA+TGG | + | chr1_3:55581731-55581750 | None:intergenic | 45.0% | |
| ATCCCCAACAAAAAGTGGGA+AGG | + | chr1_3:55581745-55581764 | None:intergenic | 45.0% | |
| CAGCATCCCCAACAAAAAGT+GGG | + | chr1_3:55581749-55581768 | None:intergenic | 45.0% | |
| TCTCCATGTCTTCGAGATCA+GGG | + | chr1_3:55581913-55581932 | None:intergenic | 45.0% | |
| ATCTCCATGTCTTCGAGATC+AGG | + | chr1_3:55581914-55581933 | None:intergenic | 45.0% | |
| GCCAGATATAATGAACCAGG+GGG | - | chr1_3:55582065-55582084 | Msa0126470:five_prime_UTR | 45.0% | |
| TCCCCCTGGTTCATTATATC+TGG | + | chr1_3:55582069-55582088 | None:intergenic | 45.0% | |
| ATACTCTACTACAATCCCCC+TGG | + | chr1_3:55582083-55582102 | None:intergenic | 45.0% | |
| CGAGTATCTATGATAAGGGG+TGG | - | chr1_3:55582147-55582166 | Msa0126470:five_prime_UTR | 45.0% | |
| GAGTGCTAACCAAGTAGTGA+TGG | + | chr1_3:55582222-55582241 | None:intergenic | 45.0% | |
| !! | TTTATTATGTAATAATAATA+GGG | - | chr1_3:55576304-55576323 | Msa0126470:intron | 5.0% |
| CTAGTGGAAGTGAGAGTGGA+GGG | + | chr1_3:55575216-55575235 | None:intergenic | 50.0% | |
| ACCGAACGTTTCCCTAAACC+GGG | - | chr1_3:55575264-55575283 | Msa0126470:three_prime_UTR | 50.0% | |
| ACCCGGTTTAGGGAAACGTT+CGG | + | chr1_3:55575268-55575287 | None:intergenic | 50.0% | |
| AACCGGATTTGACACTGGTC+CGG | + | chr1_3:55575328-55575347 | None:intergenic | 50.0% | |
| GGTTCAACCGGATTTGACAC+TGG | + | chr1_3:55575333-55575352 | None:intergenic | 50.0% | |
| GAAAACTGATCTGGACCAGC+CGG | + | chr1_3:55575354-55575373 | None:intergenic | 50.0% | |
| !! | CAATGGACCTGGAAGCGTTA+AGG | - | chr1_3:55575471-55575490 | Msa0126470:three_prime_UTR | 50.0% |
| ! | TGATACACAGATGGTGCCAG+TGG | - | chr1_3:55575562-55575581 | Msa0126470:CDS | 50.0% |
| ACGGCCATGATTGAATCACC+AGG | + | chr1_3:55575626-55575645 | None:intergenic | 50.0% | |
| ATAACATACCAGAGGCCTGC+TGG | + | chr1_3:55576820-55576839 | None:intergenic | 50.0% | |
| GCAGGCCTCTGGTATGTTAT+TGG | - | chr1_3:55576820-55576839 | Msa0126470:intron | 50.0% | |
| !! | TGCAAGTGCTGATCTAGCTG+TGG | - | chr1_3:55577128-55577147 | Msa0126470:intron | 50.0% |
| !! | GCTGTGGTGTTGATGCAAGA+AGG | - | chr1_3:55577144-55577163 | Msa0126470:intron | 50.0% |
| CTCTCGTAACCAGCAATAGC+AGG | + | chr1_3:55577489-55577508 | None:intergenic | 50.0% | |
| GAGCCACCCAAATCAGCTTA+TGG | + | chr1_3:55577932-55577951 | None:intergenic | 50.0% | |
| CATCTCACGCTACATGGGTA+TGG | + | chr1_3:55578004-55578023 | None:intergenic | 50.0% | |
| ATCCAGTAGCATGATAGGCC+TGG | - | chr1_3:55578088-55578107 | Msa0126470:CDS | 50.0% | |
| ATCCAGGCCTATCATGCTAC+TGG | + | chr1_3:55578093-55578112 | None:intergenic | 50.0% | |
| GTCACGTGACTGAAAGGTCA+CGG | - | chr1_3:55578198-55578217 | Msa0126470:intron | 50.0% | |
| TCACGTGACTGAAAGGTCAC+GGG | - | chr1_3:55578199-55578218 | Msa0126470:intron | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr1_3:55578310-55578329 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr1_3:55578311-55578330 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+TGG | - | chr1_3:55578315-55578334 | Msa0126470:intron | 50.0% |
| ! | TGCAGGAGCTTTAGTGCACT+GGG | - | chr1_3:55578316-55578335 | Msa0126470:intron | 50.0% |
| ATTCTCACTCACACGACCTC+AGG | - | chr1_3:55578846-55578865 | Msa0126470:intron | 50.0% | |
| GCAACCGTACTTGTATCCTG+AGG | + | chr1_3:55578865-55578884 | None:intergenic | 50.0% | |
| ! | TTTTCCCCTTTACCAGGGCA+AGG | - | chr1_3:55579956-55579975 | Msa0126470:intron | 50.0% |
| TTTCCCCTTTACCAGGGCAA+GGG | - | chr1_3:55579957-55579976 | Msa0126470:intron | 50.0% | |
| AGTTCCCTTGCCCTGGTAAA+GGG | + | chr1_3:55579964-55579983 | None:intergenic | 50.0% | |
| TAGTTCCCTTGCCCTGGTAA+AGG | + | chr1_3:55579965-55579984 | None:intergenic | 50.0% | |
| TTGAAGTAGTTCCCTTGCCC+TGG | + | chr1_3:55579971-55579990 | None:intergenic | 50.0% | |
| TTGCACAGCTAGGCGTTCAT+GGG | + | chr1_3:55580890-55580909 | None:intergenic | 50.0% | |
| TTTGCACAGCTAGGCGTTCA+TGG | + | chr1_3:55580891-55580910 | None:intergenic | 50.0% | |
| !! | TGAGAAGCGTTTGCACAGCT+AGG | + | chr1_3:55580900-55580919 | None:intergenic | 50.0% |
| TCCCAAGCTAACAAGCAGGA+TGG | + | chr1_3:55581393-55581412 | None:intergenic | 50.0% | |
| ACGTTCTCCAGAGACATGCA+TGG | + | chr1_3:55581592-55581611 | None:intergenic | 50.0% | |
| GCAGCATCCCCAACAAAAAG+TGG | + | chr1_3:55581750-55581769 | None:intergenic | 50.0% | |
| ATGTCTTCGAGATCAGGGAG+AGG | + | chr1_3:55581908-55581927 | None:intergenic | 50.0% | |
| TCTCCCTGATCTCGAAGACA+TGG | - | chr1_3:55581907-55581926 | Msa0126470:intron | 50.0% | |
| TTGGTCAAGCAAGTCGGTGT+TGG | - | chr1_3:55581947-55581966 | Msa0126470:intron | 50.0% | |
| TGATGTTACAACTGCCCCTC+AGG | - | chr1_3:55582014-55582033 | Msa0126470:CDS | 50.0% | |
| GCTAGTGGAAGTGAGAGTGG+AGG | + | chr1_3:55575217-55575236 | None:intergenic | 55.0% | |
| GATTTGACACTGGTCCGGAC+GGG | + | chr1_3:55575323-55575342 | None:intergenic | 55.0% | |
| GGATTTGACACTGGTCCGGA+CGG | + | chr1_3:55575324-55575343 | None:intergenic | 55.0% | |
| GTCCGGACCAGTGTCAAATC+CGG | - | chr1_3:55575323-55575342 | Msa0126470:three_prime_UTR | 55.0% | |
| TCAAATCCGGTTGAACCGGC+TGG | - | chr1_3:55575336-55575355 | Msa0126470:three_prime_UTR | 55.0% | |
| GACTTTGTGCGCAATGGACC+TGG | - | chr1_3:55575460-55575479 | Msa0126470:three_prime_UTR | 55.0% | |
| ! | GGTTCCGTTTTGCGTGTTCG+CGG | - | chr1_3:55576396-55576415 | Msa0126470:intron | 55.0% |
| ! | GTTCCGTTTTGCGTGTTCGC+GGG | - | chr1_3:55576397-55576416 | Msa0126470:intron | 55.0% |
| CTTCCCGCGAACACGCAAAA+CGG | + | chr1_3:55576403-55576422 | None:intergenic | 55.0% | |
| ! | TACAGCGGCCTTTTGTGCTC+AGG | - | chr1_3:55576558-55576577 | Msa0126470:CDS | 55.0% |
| !! | TGCTTTGGAGGTACTCCAGC+AGG | - | chr1_3:55576802-55576821 | Msa0126470:intron | 55.0% |
| GCTAGATCAGCACTTGCAGC+AGG | + | chr1_3:55577126-55577145 | None:intergenic | 55.0% | |
| ATAGCAGGCCCATGCTTACG+AGG | + | chr1_3:55577474-55577493 | None:intergenic | 55.0% | |
| AAGCATGGGCCTGCTATTGC+TGG | - | chr1_3:55577477-55577496 | Msa0126470:intron | 55.0% | |
| GAGACACGACATCGTCATCC+AGG | + | chr1_3:55578109-55578128 | None:intergenic | 55.0% | |
| AGGAGGGACCCTCCAAAACA+AGG | - | chr1_3:55578159-55578178 | Msa0126470:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_3:55578211-55578230 | Msa0126470:intron | 55.0% | |
| TGCACTGGGCTTCCCTTTGA+TGG | - | chr1_3:55578330-55578349 | Msa0126470:intron | 55.0% | |
| GTTCCCTTGCCCTGGTAAAG+GGG | + | chr1_3:55579963-55579982 | None:intergenic | 55.0% | |
| GCTGAATGCCAACTCGCTGA+AGG | + | chr1_3:55580261-55580280 | None:intergenic | 55.0% | |
| ACTTGCCTAGGAGTCCTGAG+GGG | + | chr1_3:55582031-55582050 | None:intergenic | 55.0% | |
| CACTTGCCTAGGAGTCCTGA+GGG | + | chr1_3:55582032-55582051 | None:intergenic | 55.0% | |
| CTCAGGACTCCTAGGCAAGT+GGG | - | chr1_3:55582031-55582050 | Msa0126470:CDS | 55.0% | |
| ACTCAGCATCCCACTTGCCT+AGG | + | chr1_3:55582043-55582062 | None:intergenic | 55.0% | |
| GCGGCTAGTGGAAGTGAGAG+TGG | + | chr1_3:55575220-55575239 | None:intergenic | 60.0% | |
| ACTCTCATATGCGGTCGCGG+CGG | + | chr1_3:55575239-55575258 | None:intergenic | 60.0% | |
| TTTGGACTTCCGTGCCCGTC+CGG | - | chr1_3:55575306-55575325 | Msa0126470:three_prime_UTR | 60.0% | |
| ! | TCTGGACCAGCCGGTTCAAC+CGG | + | chr1_3:55575345-55575364 | None:intergenic | 60.0% |
| ! | GCGGCCTTTTGTGCTCAGGA+AGG | - | chr1_3:55576562-55576581 | Msa0126470:CDS | 60.0% |
| GTGGGGCCCCCATGATTTAG+TGG | - | chr1_3:55581084-55581103 | Msa0126470:CDS | 60.0% | |
| AACTGCCCCTCAGGACTCCT+AGG | - | chr1_3:55582023-55582042 | Msa0126470:CDS | 60.0% | |
| CCACTTGCCTAGGAGTCCTG+AGG | + | chr1_3:55582033-55582052 | None:intergenic | 60.0% | |
| CCTCAGGACTCCTAGGCAAG+TGG | - | chr1_3:55582030-55582049 | Msa0126470:CDS | 60.0% | |
| GGGTGGGTACTTGTGCTCCT+GGG | - | chr1_3:55582164-55582183 | Msa0126470:five_prime_UTR | 60.0% | |
| ! | GAGGTACTCCAGCAGGCCTC+TGG | - | chr1_3:55576809-55576828 | Msa0126470:intron | 65.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1_3:55578298-55578317 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1_3:55578299-55578318 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | + | chr1_3:55578300-55578319 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | - | chr1_3:55578299-55578318 | Msa0126470:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr1_3:55578304-55578323 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr1_3:55578305-55578324 | None:intergenic | 65.0% | |
| GGGGTGGGTACTTGTGCTCC+TGG | - | chr1_3:55582163-55582182 | Msa0126470:five_prime_UTR | 65.0% | |
| TATGCGGTCGCGGCGGCTAG+TGG | + | chr1_3:55575232-55575251 | None:intergenic | 70.0% | |
| GACACTGGTCCGGACGGGCA+CGG | + | chr1_3:55575318-55575337 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55575176 | 55582318 | 55575176 | ID=Msa0126470;Name=Msa0126470 |
| chr1_3 | mRNA | 55575176 | 55582318 | 55575176 | ID=Msa0126470-mRNA-1;Parent=Msa0126470;Name=Msa0126470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=266|1|1|1|1|1|15|381|379 |
| chr1_3 | exon | 55575176 | 55575630 | 55575176 | ID=Msa0126470-mRNA-1:exon:17324;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55575885 | 55575991 | 55575885 | ID=Msa0126470-mRNA-1:exon:17323;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55576556 | 55576650 | 55576556 | ID=Msa0126470-mRNA-1:exon:17322;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55577939 | 55577977 | 55577939 | ID=Msa0126470-mRNA-1:exon:17321;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55578077 | 55578149 | 55578077 | ID=Msa0126470-mRNA-1:exon:17320;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55578620 | 55578726 | 55578620 | ID=Msa0126470-mRNA-1:exon:17319;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55578912 | 55578980 | 55578912 | ID=Msa0126470-mRNA-1:exon:17318;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55579849 | 55579881 | 55579849 | ID=Msa0126470-mRNA-1:exon:17317;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55579985 | 55580060 | 55579985 | ID=Msa0126470-mRNA-1:exon:17316;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55580298 | 55580373 | 55580298 | ID=Msa0126470-mRNA-1:exon:17315;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55580664 | 55580709 | 55580664 | ID=Msa0126470-mRNA-1:exon:17314;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55580911 | 55580967 | 55580911 | ID=Msa0126470-mRNA-1:exon:17313;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55581045 | 55581119 | 55581045 | ID=Msa0126470-mRNA-1:exon:17312;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55581761 | 55581922 | 55581761 | ID=Msa0126470-mRNA-1:exon:17311;Parent=Msa0126470-mRNA-1 |
| chr1_3 | exon | 55582002 | 55582318 | 55582002 | ID=Msa0126470-mRNA-1:exon:17310;Parent=Msa0126470-mRNA-1 |
| chr1_3 | five_prime_UTR | 55582053 | 55582318 | 55582053 | ID=Msa0126470-mRNA-1:five_prime_utr;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55582002 | 55582052 | 55582002 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55581761 | 55581922 | 55581761 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55581045 | 55581119 | 55581045 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55580911 | 55580967 | 55580911 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55580664 | 55580709 | 55580664 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55580298 | 55580373 | 55580298 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55579985 | 55580060 | 55579985 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55579849 | 55579881 | 55579849 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55578912 | 55578980 | 55578912 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55578620 | 55578726 | 55578620 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55578077 | 55578149 | 55578077 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55577939 | 55577977 | 55577939 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55576556 | 55576650 | 55576556 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55575885 | 55575991 | 55575885 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | CDS | 55575557 | 55575630 | 55575557 | ID=Msa0126470-mRNA-1:cds;Parent=Msa0126470-mRNA-1 |
| chr1_3 | three_prime_UTR | 55575176 | 55575556 | 55575176 | ID=Msa0126470-mRNA-1:three_prime_utr;Parent=Msa0126470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
