AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031660 MtrunA17_Chr1g0189851 99.462 744 4 0 243 986 1 744 0.0 1560
Msa0031660 MtrunA17_Chr1g0189851 35.606 264 170 0 111 374 5 268 6.18e-41 162
Msa0031660 MtrunA17_Chr1g0189851 32.168 286 194 0 74 359 2 287 3.27e-38 153
Msa0031660 MtrunA17_Chr1g0189851 32.584 267 180 0 142 408 2 268 7.41e-35 143
Msa0031660 MtrunA17_Chr1g0189851 27.485 171 124 0 68 238 98 268 2.29e-11 68.2
Msa0031660 MtrunA17_Chr1g0189861 98.611 216 3 0 1 216 1 216 5.84e-151 446
Msa0031660 MtrunA17_Chr1g0189861 34.014 147 97 0 238 384 68 214 4.20e-18 84.7
Msa0031660 MtrunA17_Chr1g0189861 34.783 115 75 0 238 352 102 216 2.58e-15 76.6
Msa0031660 MtrunA17_Chr1g0189861 39.583 96 58 0 189 284 121 216 1.71e-14 73.9
Msa0031660 MtrunA17_Chr1g0189861 30.631 111 77 0 306 416 102 212 5.70e-11 63.9
Msa0031660 MtrunA17_Chr1g0189861 37.864 103 64 0 408 510 102 204 6.68e-11 63.5
Msa0031660 MtrunA17_Chr1g0178301 27.607 815 511 14 178 970 96 853 2.08e-83 289
Msa0031660 MtrunA17_Chr1g0178301 30.904 343 189 3 148 442 98 440 4.57e-40 160
Msa0031660 MtrunA17_Chr1g0168581 23.411 299 196 2 140 431 201 473 2.48e-12 71.2
Msa0031660 MtrunA17_Chr5g0401551 22.179 257 200 0 246 502 289 545 5.65e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031660 AT3G04240.1 81.977 971 170 2 21 986 7 977 0.0 1709
Msa0031660 AT3G04240.2 85.081 744 111 0 243 986 1 744 0.0 1377
Msa0031660 AT3G04240.2 32.362 309 200 2 175 474 1 309 3.48e-41 163
Msa0031660 AT3G04240.2 33.103 290 194 0 74 363 2 291 1.14e-40 161
Msa0031660 AT3G11540.1 27.590 830 524 15 177 985 92 865 1.26e-79 279
Msa0031660 AT3G11540.1 31.549 355 183 5 141 442 90 437 3.82e-39 157
Msa0031660 AT3G11540.1 32.830 265 171 1 116 373 172 436 1.76e-34 143
Msa0031660 AT3G11540.1 26.480 321 213 5 239 545 50 361 1.62e-19 95.1
Msa0031660 AT3G11540.1 28.346 254 168 4 78 317 196 449 6.98e-19 92.8
Msa0031660 AT3G11540.1 28.700 223 149 3 295 510 41 260 6.23e-16 83.6
Msa0031660 AT3G11540.2 25.816 705 447 16 295 985 41 683 4.47e-51 193
Msa0031660 AT3G11540.2 31.694 183 113 2 198 373 77 254 1.49e-16 85.1
Msa0031660 AT3G11540.2 31.176 170 103 3 177 339 92 254 1.68e-13 75.5
Msa0031660 AT3G11540.2 26.540 211 143 2 239 442 50 255 9.70e-12 69.7
Msa0031660 AT3G11540.2 31.250 192 103 6 141 317 90 267 3.95e-11 67.8
Msa0031660 AT2G32450.1 28.713 202 136 2 180 373 245 446 1.35e-14 79.0
Msa0031660 AT2G32450.1 27.976 168 121 0 196 363 303 470 7.76e-13 73.2
Msa0031660 AT2G32450.1 24.481 241 174 1 199 431 230 470 1.01e-12 72.8
Msa0031660 AT1G05150.1 24.206 252 165 1 180 431 250 475 3.40e-13 74.3
Msa0031660 AT1G05150.1 25.094 267 172 2 248 512 250 490 1.41e-12 72.4
Msa0031660 AT5G63200.2 21.594 389 231 10 117 434 218 603 2.21e-11 68.2

Find 281 sgRNAs with CRISPR-Local

Find 755 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATTGGGTTGCGTATT+TGG 0.094411 1_1:-58433619 Msa0031660:three_prime_UTR
CAAATCCTTATCAACCTTAA+TGG 0.143162 1_1:-58436437 Msa0031660:CDS
GTAATTTAGTTACTCAAAAT+TGG 0.160570 1_1:-58433632 Msa0031660:three_prime_UTR
GGCTGAAGCTCATGCTAATT+TGG 0.170309 1_1:-58439279 Msa0031660:CDS
AAATGATGTTACAGGTAATT+TGG 0.170385 1_1:-58440457 Msa0031660:intron
TTTGGAAGCTTACAATAATT+TGG 0.173624 1_1:-58440355 Msa0031660:intron
TGACCATGCATCAGCAAAAT+TGG 0.177023 1_1:+58442994 None:intergenic
TACCATGTATTAAATATTTC+AGG 0.201953 1_1:+58435001 None:intergenic
TTTCTTCTTCTCTACGATTT+TGG 0.215641 1_1:+58444642 None:intergenic
CCACAGGAACAGATATATTA+TGG 0.228996 1_1:-58434346 Msa0031660:CDS
CAATGCTTGCTCTGGAAATT+AGG 0.230192 1_1:-58437076 Msa0031660:intron
ACCAGTTCAAGTTTCATATA+TGG 0.238851 1_1:-58435464 Msa0031660:CDS
TTACAACAATGTATATTCTT+TGG 0.248808 1_1:+58433651 None:intergenic
TACTCTGCCTCTTGAGAAAA+TGG 0.256247 1_1:-58434306 Msa0031660:CDS
CTACCTTTGTATAACCATTA+AGG 0.273432 1_1:+58436423 None:intergenic
TAATTTGGCTTCTGCCTATA+AGG 0.274347 1_1:-58439264 Msa0031660:CDS
TGCTGAGTGTTACGGTAATA+TGG 0.287696 1_1:-58443715 Msa0031660:CDS
ATTAGCATACCTATCCTTAT+AGG 0.292089 1_1:+58439250 None:intergenic
CCAAACTATGGCATGGCTTA+TGG 0.303947 1_1:-58441251 Msa0031660:intron
CATGTATATATTTCCAAGAT+TGG 0.315239 1_1:+58439831 None:intergenic
TAACCTCCCTCCTGCTTGAT+TGG 0.315790 1_1:+58436879 None:intergenic
TCAGTTAGAGCTTGAAGCTT+TGG 0.317430 1_1:+58434021 None:intergenic
GTTTCATATATGGGATTTCC+TGG 0.320555 1_1:-58435454 Msa0031660:CDS
CCAGTTCAAGTTTCATATAT+GGG 0.320872 1_1:-58435463 Msa0031660:CDS
GCGTATTTGGTTACAGTTGT+TGG 0.329402 1_1:-58433606 Msa0031660:three_prime_UTR
CTCTGTATTTCCACTGGACT+GGG 0.331322 1_1:-58434263 Msa0031660:CDS
AATAGTAAAATTACCATTAG+AGG 0.332566 1_1:+58442893 None:intergenic
AGAAGATTGCAAGTTGCTTC+AGG 0.349834 1_1:+58438857 None:intergenic
TCCTATGTCTATTTATCATC+TGG 0.352528 1_1:+58433759 None:intergenic
CTCCATTCAGTACCATCATT+TGG 0.353434 1_1:+58436551 None:intergenic
CAGTTAGAGCTTGAAGCTTT+GGG 0.354805 1_1:+58434022 None:intergenic
AAAGGGAACATGAAAGGAAT+TGG 0.355152 1_1:+58444550 None:intergenic
ATCTTGGTTCGGAAGAGATC+TGG 0.358333 1_1:+58444759 None:intergenic
GATCGTTTGGGCTGACAGTT+TGG 0.362406 1_1:+58435088 None:intergenic
AAACAGAGGCAATACTTATA+AGG 0.364549 1_1:-58439366 Msa0031660:CDS
CTTCAGACACGGCCAAACTA+TGG 0.368387 1_1:-58441263 Msa0031660:CDS
CCTGATGCATACTTGAACCT+TGG 0.368615 1_1:-58441441 Msa0031660:CDS
CTCTTGAAATTTCCTGCAGC+AGG 0.374684 1_1:-58434830 Msa0031660:CDS
CAATCTTCTACATACACTTC+AGG 0.378736 1_1:-58438843 Msa0031660:intron
CCACAAGCGTTGACCAATCT+TGG 0.379245 1_1:-58439844 Msa0031660:CDS
CTTTGTAAACGATTATAAAC+AGG 0.383696 1_1:-58435236 Msa0031660:intron
ATTATAGCAAGGTTGTTATA+CGG 0.385320 1_1:+58439651 None:intergenic
TATAACCATTAAGGTTGATA+AGG 0.388324 1_1:+58436432 None:intergenic
ATAGGAGCAGGATGGCTAAA+TGG 0.389099 1_1:+58436903 None:intergenic
ACTTGCTATCAACCCTCTAA+TGG 0.389345 1_1:-58442906 Msa0031660:intron
AAATCTTGCTGGTCTGTTCA+TGG 0.391501 1_1:-58441871 Msa0031660:CDS
TATTAGAAGATGTTTGCTTT+TGG 0.391927 1_1:-58433531 Msa0031660:three_prime_UTR
CAGCCCAAACGATCAGATTA+TGG 0.392917 1_1:-58435079 Msa0031660:CDS
ACTCTGTATTTCCACTGGAC+TGG 0.395288 1_1:-58434264 Msa0031660:CDS
CCATAAGCCATGCCATAGTT+TGG 0.399981 1_1:+58441251 None:intergenic
CCAAGGTTCAAGTATGCATC+AGG 0.403218 1_1:+58441441 None:intergenic
CAAATGTTCAAGGAAGTAGA+AGG 0.411950 1_1:-58437288 Msa0031660:CDS
ACATTATGAGCAAGGTCAAC+TGG 0.412081 1_1:-58440427 Msa0031660:CDS
GCTGGTCTGTTCATGGAGTC+TGG 0.413134 1_1:-58441864 Msa0031660:CDS
CTTCACAGATGTTGCAATGA+AGG 0.419095 1_1:-58434541 Msa0031660:CDS
TAATTTAGTTACTCAAAATT+GGG 0.422515 1_1:-58433631 Msa0031660:three_prime_UTR
CTATTACTTGATTGCCATTG+AGG 0.423798 1_1:-58443535 Msa0031660:intron
CGTATTTGGTTACAGTTGTT+GGG 0.425028 1_1:-58433605 Msa0031660:three_prime_UTR
GAGACCATAATCTGATCGTT+TGG 0.428281 1_1:+58435075 None:intergenic
CTCTTGAGAAAATGGCTACT+AGG 0.429756 1_1:-58434298 Msa0031660:CDS
ATTGCATGGTCAAATCTTGC+TGG 0.431271 1_1:-58441882 Msa0031660:CDS
CTGGACGGAGATCATGATTC+CGG 0.431969 1_1:+58444474 None:intergenic
CAAGATTGGTCAACGCTTGT+GGG 0.432953 1_1:+58439845 None:intergenic
ATGCTATGGCATGGAAAGGC+TGG 0.434506 1_1:+58437111 None:intergenic
ATCTGAAGCAGAGCACTTTG+TGG 0.435992 1_1:-58436516 Msa0031660:CDS
TTATAGGGAGATGAGAATCT+TGG 0.438587 1_1:+58444743 None:intergenic
CCTTGGTGCAATTTATTACC+AGG 0.442505 1_1:-58443906 Msa0031660:intron
GACCATGCATCAGCAAAATT+GGG 0.445415 1_1:+58442995 None:intergenic
CCAAGATTGGTCAACGCTTG+TGG 0.445603 1_1:+58439844 None:intergenic
AAAATGGCTACTAGGGTTGC+TGG 0.449044 1_1:-58434290 Msa0031660:CDS
CTGATGCATACTTGAACCTT+GGG 0.451840 1_1:-58441440 Msa0031660:CDS
GAACGGTTCAACGCGATCTC+CGG 0.452834 1_1:+58444375 None:intergenic
ACCAAGGAGTAGTAAATTAT+CGG 0.453046 1_1:+58443922 None:intergenic
ACCTTGCTCATAATGTATAC+TGG 0.453921 1_1:+58440434 None:intergenic
CACAGGAACAGATATATTAT+GGG 0.455571 1_1:-58434345 Msa0031660:CDS
CCCATATATGAAACTTGAAC+TGG 0.456705 1_1:+58435463 None:intergenic
CTTTCAGATGCTGCTGCACA+AGG 0.457171 1_1:-58434585 Msa0031660:intron
GACCTCATTGTAGCAAGATA+TGG 0.458721 1_1:+58439424 None:intergenic
AGCAGTGTGCAGCATATTTG+CGG 0.459706 1_1:+58436955 None:intergenic
GGCAATACTTATAAGGAGAT+TGG 0.459746 1_1:-58439359 Msa0031660:CDS
AGCCACCACTCTCAGCTTGT+TGG 0.461561 1_1:-58444427 Msa0031660:CDS
ATGGGATTTCCTGGCACAAC+CGG 0.462984 1_1:-58435445 Msa0031660:CDS
CCCTCCTGCTTGATTGGAAT+AGG 0.463550 1_1:+58436885 None:intergenic
AGACCATAATCTGATCGTTT+GGG 0.464870 1_1:+58435076 None:intergenic
TAATGCAGTGTGTCTGTTGT+TGG 0.467039 1_1:-58437323 Msa0031660:intron
CGGAATCATGATCTCCGTCC+AGG 0.468061 1_1:-58444473 Msa0031660:exon
GGCTCACTCTGTATTTCCAC+TGG 0.472212 1_1:-58434269 Msa0031660:CDS
CGACGACGGCTCTTGCTTAA+CGG 0.473736 1_1:+58444351 None:intergenic
CAAGAGCCAAAGCGCGCTGT+TGG 0.474016 1_1:+58434847 None:intergenic
ACTTGACCCAATGCTTGCTC+TGG 0.474813 1_1:-58437084 Msa0031660:CDS
GTGAATCAGTGAACGAAGAA+AGG 0.476380 1_1:+58444532 None:intergenic
TAGAGTCAGTGATGCTATCC+AGG 0.479729 1_1:-58439336 Msa0031660:CDS
CTACATTCCCGTCTCTAATA+CGG 0.479761 1_1:+58433733 None:intergenic
CCACACTTTGCTGAGTGTTA+CGG 0.481876 1_1:-58443723 Msa0031660:CDS
CCACCCATTGTCACATCTCA+TGG 0.482380 1_1:-58436718 Msa0031660:CDS
AAGAGCCAAAGCGCGCTGTT+GGG 0.483592 1_1:+58434848 None:intergenic
TATGAAACTTGAACTGGTGC+AGG 0.484055 1_1:+58435469 None:intergenic
ACCGATAATTTACTACTCCT+TGG 0.486401 1_1:-58443923 Msa0031660:CDS
GTAATCTATGTATGTAGCTC+CGG 0.486466 1_1:+58435426 None:intergenic
GGTTATGAAAGACTAAGGAT+TGG 0.487687 1_1:-58436861 Msa0031660:CDS
GGTTGATGCTCATAGTAACT+TGG 0.496415 1_1:-58442719 Msa0031660:CDS
CACGCTCATGATTCTAGTGA+AGG 0.496574 1_1:-58444310 Msa0031660:intron
AGCTACATACATAGATTACT+TGG 0.496829 1_1:-58435422 Msa0031660:CDS
CTTCAATCAACTTTACAAGA+TGG 0.496856 1_1:-58435026 Msa0031660:CDS
GCATGAGCTTCAGCCATAGT+AGG 0.497608 1_1:+58439287 None:intergenic
CAAAGTAGCAATGCGGGAGA+TGG 0.497765 1_1:+58435254 None:intergenic
CCTTCTCCGTCTCTGTTCAC+CGG 0.498189 1_1:-58444493 Msa0031660:five_prime_UTR
TAATTTCCAGAGCAAGCATT+GGG 0.501643 1_1:+58437078 None:intergenic
TATGTAGCTCCGGTTGTGCC+AGG 0.502858 1_1:+58435436 None:intergenic
GTTATGAAAGACTAAGGATT+GGG 0.503729 1_1:-58436860 Msa0031660:intron
TCTGTGAAGATAATTTGATC+AGG 0.505192 1_1:+58434555 None:intergenic
AGTCTCATTTCTCCTGCTGC+AGG 0.505262 1_1:+58434818 None:intergenic
TTGGCAACCCTCAGACATGC+GGG 0.505655 1_1:+58433679 None:intergenic
TGCTTGATTGGAATAGGAGC+AGG 0.506321 1_1:+58436891 None:intergenic
GGCTCTTGCTTAACGGCGAA+CGG 0.508387 1_1:+58444358 None:intergenic
GGTCCTCCGCATTGATCCCT+TGG 0.509269 1_1:-58439405 Msa0031660:CDS
ATTGATCCCTTGGCAGCTGA+TGG 0.509463 1_1:-58439395 Msa0031660:CDS
AACATGAAAGGAATTGGATC+GGG 0.510090 1_1:+58444556 None:intergenic
AATGCAGTGTGTCTGTTGTT+GGG 0.510745 1_1:-58437322 Msa0031660:intron
GGCAGACCTTGTAATACTGC+AGG 0.511471 1_1:+58441826 None:intergenic
GGTAATCTAATGAAAGCTCA+AGG 0.514812 1_1:-58442697 Msa0031660:CDS
TGCTATAATATATAAGCAGC+AGG 0.515077 1_1:-58439637 Msa0031660:intron
GCATGGAAAGGCTGGACACT+AGG 0.517313 1_1:+58437119 None:intergenic
CGTTTACAAAGTAGCAATGC+GGG 0.517564 1_1:+58435248 None:intergenic
TAATCGCACGTATGTAATCC+TGG 0.519833 1_1:+58439318 None:intergenic
CAATCTTGGAAATATATACA+TGG 0.519958 1_1:-58439830 Msa0031660:CDS
TGCTATCGTATCTGATGTCA+TGG 0.520898 1_1:+58436484 None:intergenic
TACAAGACCATCAGCTGCCA+AGG 0.521518 1_1:+58439388 None:intergenic
GATTACCGTCAGGCCTACTA+TGG 0.522671 1_1:-58439300 Msa0031660:CDS
ACACATTAGACGGAGTTCCT+TGG 0.522719 1_1:-58434514 Msa0031660:CDS
GTGTACCCAACAGCGCGCTT+TGG 0.522743 1_1:-58434853 Msa0031660:CDS
AGCTCTCGATTGCCGTTCAC+CGG 0.523754 1_1:-58444394 Msa0031660:CDS
ATCAAGAATACATACCTCAA+TGG 0.523924 1_1:+58443521 None:intergenic
ACGGAGAAGGAACGAAGGAT+CGG 0.525168 1_1:+58444506 None:intergenic
GGCAATAACGTGAGCGACGA+CGG 0.526386 1_1:+58444337 None:intergenic
TCTTGGTTCGGAAGAGATCT+GGG 0.527496 1_1:+58444760 None:intergenic
GGGAGATGAGAATCTTGGTT+CGG 0.529630 1_1:+58444748 None:intergenic
GAGATCTGGGCCGTCGATGT+AGG 0.529801 1_1:+58444773 None:intergenic
CTAATTTCCAGAGCAAGCAT+TGG 0.530198 1_1:+58437077 None:intergenic
AACCTACCTTTGCTATTGCA+TGG 0.530684 1_1:-58441896 Msa0031660:CDS
TTCACAGATGTTGCAATGAA+GGG 0.531625 1_1:-58434540 Msa0031660:CDS
CAGAGCCCTGCAGTATTACA+AGG 0.533229 1_1:-58441832 Msa0031660:intron
TGAATCAGTGAACGAAGAAA+GGG 0.534195 1_1:+58444533 None:intergenic
AGTACCATCATTTGGACTCA+AGG 0.534981 1_1:+58436559 None:intergenic
CTCTCTTTGACACAAACCGA+TGG 0.535023 1_1:-58433969 Msa0031660:CDS
TGGCTTCTGCCTATAAGGAT+AGG 0.535459 1_1:-58439259 Msa0031660:intron
TTGGAAATATATACATGGAA+TGG 0.538270 1_1:-58439825 Msa0031660:intron
TAGTTAACCCCGCATGTCTG+AGG 0.539227 1_1:-58433687 Msa0031660:three_prime_UTR
AGGGAGGTTATGAAAGACTA+AGG 0.540074 1_1:-58436866 Msa0031660:CDS
AAGAACATACATTATAGCAC+TGG 0.540515 1_1:+58439983 None:intergenic
CTTTATCTTTCCTACATCGA+CGG 0.541818 1_1:-58444783 Msa0031660:five_prime_UTR
AAGAAAACGCGAACTCGAGA+AGG 0.542439 1_1:+58444710 None:intergenic
TCTTGAGAAAATGGCTACTA+GGG 0.544333 1_1:-58434297 Msa0031660:CDS
CTAGAATCATGAGCGTGTAA+AGG 0.546184 1_1:+58444316 None:intergenic
ATGTGGAATCTGCATTGCTC+TGG 0.546367 1_1:-58433828 Msa0031660:CDS
GAAAGGAATTGGATCGGGAG+AGG 0.548057 1_1:+58444561 None:intergenic
GTGGTATGTGCATTGCATAA+AGG 0.548073 1_1:+58434365 None:intergenic
GCCAGTATACATTATGAGCA+AGG 0.548161 1_1:-58440435 Msa0031660:CDS
GCTGAGAGTGGTGGCTGTAG+TGG 0.551447 1_1:+58444434 None:intergenic
TTCAGATGCTGCTGCACAAG+GGG 0.555143 1_1:-58434583 Msa0031660:intron
TGCTCCTATTCCAATCAAGC+AGG 0.555496 1_1:-58436889 Msa0031660:CDS
ATAGTAAAATTACCATTAGA+GGG 0.557033 1_1:+58442894 None:intergenic
GGTAATGCTCTGAAAGATGT+TGG 0.562829 1_1:-58440024 Msa0031660:CDS
GGTGAAGTTTCTGTTAAGAT+CGG 0.564002 1_1:+58444680 None:intergenic
ATTATGGGCAGGTCTGCCTA+TGG 0.564345 1_1:-58434330 Msa0031660:CDS
GGAACAGATATATTATGGGC+AGG 0.566521 1_1:-58434341 Msa0031660:CDS
TGGGTCAAGTGGATATGCTA+TGG 0.567625 1_1:+58437097 None:intergenic
TGAGCAAGGTCAACTGGACA+TGG 0.570022 1_1:-58440421 Msa0031660:CDS
ACGAAGAAAGGGAACATGAA+AGG 0.571085 1_1:+58444544 None:intergenic
CTATTTAACACAGGCTCCGA+AGG 0.573091 1_1:+58433502 None:intergenic
AGAGCAAGCATTGGGTCAAG+TGG 0.574030 1_1:+58437086 None:intergenic
GGCTGTAAAGAGCTACAGAC+AGG 0.576286 1_1:-58438903 Msa0031660:CDS
AGTTAACCCCGCATGTCTGA+GGG 0.577484 1_1:-58433686 Msa0031660:three_prime_UTR
GCTACACTAAATGTAACCAC+TGG 0.577805 1_1:-58439684 Msa0031660:CDS
ATCTGCATTGCTCTGGTCAA+CGG 0.578259 1_1:-58433821 Msa0031660:CDS
TTATTTCAGTGGACATGTAG+AGG 0.579165 1_1:-58438927 Msa0031660:intron
CTGTATTTCCACTGGACTGG+GGG 0.579676 1_1:-58434261 Msa0031660:CDS
ATCCTGAAATATTTAATACA+TGG 0.581813 1_1:-58435003 Msa0031660:intron
GGATCGTGATCAAATGTTCA+AGG 0.582624 1_1:-58437298 Msa0031660:CDS
GTTGATGCTCATAGTAACTT+GGG 0.583189 1_1:-58442718 Msa0031660:CDS
AAGTATGCATCAGGGAAGGA+AGG 0.583668 1_1:+58441450 None:intergenic
GAACATGAAAGGAATTGGAT+CGG 0.586223 1_1:+58444555 None:intergenic
GAACCTTGGGAATGTATACA+AGG 0.587196 1_1:-58441427 Msa0031660:intron
TACGCATGTATGCACTAGCT+AGG 0.587484 1_1:+58442969 None:intergenic
GGGACGAGATGATTGTCAGC+AGG 0.587594 1_1:-58434241 Msa0031660:intron
GCTAGTGCATACATGCGTAA+AGG 0.588429 1_1:-58442965 Msa0031660:CDS
GGTGGCGATGGTGATCTCCC+TGG 0.590906 1_1:+58444455 None:intergenic
AGGAATACCGTATTAGAGAC+GGG 0.590915 1_1:-58433740 Msa0031660:three_prime_UTR
ATGATTCCGGTGAACAGAGA+CGG 0.591963 1_1:+58444487 None:intergenic
ATCCCATGAGATGTGACAAT+GGG 0.592439 1_1:+58436715 None:intergenic
AGATTACTTGGTCACTGATG+AGG 0.592637 1_1:-58435410 Msa0031660:intron
TAGATATGTGCATACTGAAG+AGG 0.593648 1_1:+58435292 None:intergenic
TCAAGAGGCAGAGTAACCAT+AGG 0.593677 1_1:+58434314 None:intergenic
GTCAACGCTTGTGGGTGGTT+AGG 0.593743 1_1:+58439853 None:intergenic
TCAGTGACCTTAAAATGCTG+TGG 0.594451 1_1:+58433798 None:intergenic
CAAGTGGATATGCTATGGCA+TGG 0.594989 1_1:+58437102 None:intergenic
TTTGGCAACCCTCAGACATG+CGG 0.595276 1_1:+58433678 None:intergenic
CAACCTTAATGGTTATACAA+AGG 0.596920 1_1:-58436426 Msa0031660:intron
ATCAACATGCTCTTCAGACA+CGG 0.597820 1_1:-58441274 Msa0031660:CDS
AGCAGGAGAAATGAGACTGA+GGG 0.597842 1_1:-58434813 Msa0031660:CDS
GGTGGTTAGGCTGTAACGAA+AGG 0.598171 1_1:+58439866 None:intergenic
GTTTGTGTCAAAGAGAGGAC+AGG 0.598476 1_1:+58433975 None:intergenic
TGAAGGGTGAACACATTAGA+CGG 0.599057 1_1:-58434524 Msa0031660:CDS
TAATATGGCAAATGCATGGA+AGG 0.599920 1_1:-58443700 Msa0031660:intron
ACATACGTGCGATTACCGTC+AGG 0.600155 1_1:-58439310 Msa0031660:CDS
TCTGTATTTCCACTGGACTG+GGG 0.600589 1_1:-58434262 Msa0031660:CDS
TCAACGCGATCTCCGGTGAA+CGG 0.601206 1_1:+58444382 None:intergenic
TAGGAATACCGTATTAGAGA+CGG 0.601667 1_1:-58433741 Msa0031660:three_prime_UTR
GAGAGTGGTGGCTGTAGTGG+TGG 0.601722 1_1:+58444437 None:intergenic
TCCAGATGATAAATAGACAT+AGG 0.604142 1_1:-58433760 Msa0031660:exon
TTACCTTGTATACATTCCCA+AGG 0.606164 1_1:+58441424 None:intergenic
CCATAATATATCTGTTCCTG+TGG 0.606701 1_1:+58434346 None:intergenic
CACCCATTGTCACATCTCAT+GGG 0.607132 1_1:-58436717 Msa0031660:CDS
GCTGCTTATATATTATAGCA+AGG 0.607657 1_1:+58439640 None:intergenic
TCCTATTCCAATCAAGCAGG+AGG 0.607994 1_1:-58436886 Msa0031660:CDS
GAACGGCAATCGAGAGCTGT+CGG 0.609408 1_1:+58444399 None:intergenic
TCTAATGAAAGCTCAAGGGT+TGG 0.609689 1_1:-58442692 Msa0031660:CDS
GCGATGGTGATCTCCCTGGA+CGG 0.610099 1_1:+58444459 None:intergenic
ACGGTAATATGGCAAATGCA+TGG 0.610222 1_1:-58443704 Msa0031660:CDS
GATTGGTCAACGCTTGTGGG+TGG 0.615687 1_1:+58439848 None:intergenic
GTCCAAATGATGGTACTGAA+TGG 0.616666 1_1:-58436553 Msa0031660:CDS
TTGAGAGAGAAAATTCTCGA+GGG 0.616981 1_1:+58444619 None:intergenic
TTTCAGATGCTGCTGCACAA+GGG 0.618278 1_1:-58434584 Msa0031660:intron
GGTGGCTGTAGTGGTGGCGA+TGG 0.618676 1_1:+58444443 None:intergenic
ATTTGACCATGCAATAGCAA+AGG 0.621397 1_1:+58441890 None:intergenic
TTATGCAATGCACATACCAC+AGG 0.622011 1_1:-58434362 Msa0031660:CDS
GGAATCATGATCTCCGTCCA+GGG 0.622815 1_1:-58444472 Msa0031660:exon
GTCAAGAAATAAGTCTGCCA+AGG 0.623121 1_1:+58434497 None:intergenic
GTAATCTAATGAAAGCTCAA+GGG 0.626437 1_1:-58442696 Msa0031660:CDS
CATCGGTTTGTGTCAAAGAG+AGG 0.626631 1_1:+58433970 None:intergenic
ATTGAGAGAGAAAATTCTCG+AGG 0.628319 1_1:+58444618 None:intergenic
TAACATGCAATAGCTTCTTG+AGG 0.628478 1_1:+58441296 None:intergenic
AAATGTTCAAGGAAGTAGAA+GGG 0.629997 1_1:-58437287 Msa0031660:CDS
GAAAGATGTTGGCAGAGTGG+AGG 0.630480 1_1:-58440013 Msa0031660:CDS
GACCATGCAATAGCAAAGGT+AGG 0.630488 1_1:+58441894 None:intergenic
TCTCTTTGACACAAACCGAT+GGG 0.631347 1_1:-58433968 Msa0031660:intron
TTCAGCCATAGTAGGCCTGA+CGG 0.631547 1_1:+58439295 None:intergenic
GCAGACCTTGTAATACTGCA+GGG 0.633448 1_1:+58441827 None:intergenic
TGCCATATCTTGCTACAATG+AGG 0.633633 1_1:-58439426 Msa0031660:CDS
GCACATCAAATGTACAAGAG+TGG 0.634726 1_1:-58444004 Msa0031660:CDS
GACACGGCCAAACTATGGCA+TGG 0.637088 1_1:-58441258 Msa0031660:CDS
TATGCACAACAGAAAGAATG+TGG 0.638579 1_1:-58436682 Msa0031660:CDS
ATGAGCCAACAAGCTGAGAG+TGG 0.640591 1_1:+58444422 None:intergenic
AGTAAATTATCGGTGCGAAG+CGG 0.641514 1_1:+58443932 None:intergenic
AGGTATGTGAGTAGTGACTT+TGG 0.648824 1_1:-58436744 Msa0031660:CDS
CAGCAGGAGAAATGAGACTG+AGG 0.649017 1_1:-58434814 Msa0031660:CDS
CAGAGACGGAGAAGGAACGA+AGG 0.654980 1_1:+58444501 None:intergenic
ACAAGACCATCAGCTGCCAA+GGG 0.656374 1_1:+58439389 None:intergenic
GGATATGCTATGGCATGGAA+AGG 0.659767 1_1:+58437107 None:intergenic
CCGTAACACTCAGCAAAGTG+TGG 0.661409 1_1:+58443723 None:intergenic
GTTCAAGTATGCATCAGGGA+AGG 0.661650 1_1:+58441446 None:intergenic
CTGCCAAGGGATCAATGCGG+AGG 0.661848 1_1:+58439402 None:intergenic
CCTATTCCAATCAAGCAGGA+GGG 0.662777 1_1:-58436885 Msa0031660:CDS
TCAAGTAATAGCGAATTGCA+AGG 0.664537 1_1:+58443547 None:intergenic
CCATGAGATGTGACAATGGG+TGG 0.665060 1_1:+58436718 None:intergenic
CCGGTGAACAGAGACGGAGA+AGG 0.665829 1_1:+58444493 None:intergenic
ATTCCAATCAAGCAGGAGGG+AGG 0.666622 1_1:-58436882 Msa0031660:CDS
TATGCCTTGAGTCCAAATGA+TGG 0.671518 1_1:-58436563 Msa0031660:CDS
TGTTAAATAGTCATTCCTGT+CGG 0.674288 1_1:-58433489 Msa0031660:three_prime_UTR
CAGGAATGACTATTTAACAC+AGG 0.674400 1_1:+58433493 None:intergenic
CAAGGTTCAAGTATGCATCA+GGG 0.675585 1_1:+58441442 None:intergenic
GCAGTGTGTCTGTTGTTGGG+AGG 0.677864 1_1:-58437319 Msa0031660:intron
TGGCAACCCTCAGACATGCG+GGG 0.678068 1_1:+58433680 None:intergenic
AAATTGTTAATGCAGGAACA+TGG 0.679005 1_1:-58439733 Msa0031660:intron
GGAGCAGGATGGCTAAATGG+TGG 0.680480 1_1:+58436906 None:intergenic
CCTGGTAATAAATTGCACCA+AGG 0.681422 1_1:+58443906 None:intergenic
GGCATACAGTTGTTACCTCG+AGG 0.683086 1_1:-58441931 Msa0031660:CDS
AGCCAACAAGCTGAGAGTGG+TGG 0.683131 1_1:+58444425 None:intergenic
TTTCAGTGGACATGTAGAGG+CGG 0.686039 1_1:-58438924 Msa0031660:intron
GATCCCATGAGATGTGACAA+TGG 0.693395 1_1:+58436714 None:intergenic
GTTGTATACGCAATGCCTCG+AGG 0.703270 1_1:+58441916 None:intergenic
GCTGATGGTCTTGTAAACAG+AGG 0.706829 1_1:-58439380 Msa0031660:CDS
ATACGGTGCAGATAATCCAG+TGG 0.709165 1_1:+58439668 None:intergenic
TGATTGGAATAGGAGCAGGA+TGG 0.709742 1_1:+58436895 None:intergenic
GCACAACAGAAAGAATGTGG+AGG 0.713802 1_1:-58436679 Msa0031660:intron
TCGTTTACAAAGTAGCAATG+CGG 0.715211 1_1:+58435247 None:intergenic
TCTGAAAGATGTTGGCAGAG+TGG 0.720915 1_1:-58440016 Msa0031660:CDS
TTGTTAATGCAGGAACATGG+TGG 0.744612 1_1:-58439730 Msa0031660:intron
ATCAGATTATGGTCTCCCTG+AGG 0.756050 1_1:-58435068 Msa0031660:CDS
CAGCTGCCAAGGGATCAATG+CGG 0.837731 1_1:+58439399 None:intergenic
GATAGCAAAATTGATCAACG+AGG 0.841690 1_1:-58436468 Msa0031660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTTTCTATTAATAAT+TGG + chr1_1:58435101-58435120 None:intergenic 10.0%
!! AAAAAAAAAAAAAATTGAGT+AGG + chr1_1:58438370-58438389 None:intergenic 10.0%
!!! ATATTTTACTATTCAATTAT+TGG + chr1_1:58440176-58440195 None:intergenic 10.0%
!! TTAATCAAAATTCATAAATA+AGG - chr1_1:58441913-58441932 Msa0031660:CDS 10.0%
!!! TTAATTTGAAGTTATATTTA+TGG - chr1_1:58441976-58441995 Msa0031660:intron 10.0%
!!! TTTTTGATTGTTTATATATA+TGG - chr1_1:58442621-58442640 Msa0031660:intron 10.0%
!!! TTTTGTACAATTTAATTTTT+CGG - chr1_1:58444346-58444365 Msa0031660:CDS 10.0%
!!! AAAAAAAAAGCATCAAATAT+GGG + chr1_1:58435168-58435187 None:intergenic 15.0%
!!! AAAAAAAAAAGCATCAAATA+TGG + chr1_1:58435169-58435188 None:intergenic 15.0%
!!! TTGTTTAGTTTTTTTTATGT+AGG - chr1_1:58435888-58435907 Msa0031660:intron 15.0%
!! GTAAAAAAAAAAAAGATGTA+GGG + chr1_1:58436158-58436177 None:intergenic 15.0%
!! TGTAAAAAAAAAAAAGATGT+AGG + chr1_1:58436159-58436178 None:intergenic 15.0%
!!! TAGTTACTGATTTAAATAAT+TGG - chr1_1:58436182-58436201 Msa0031660:intron 15.0%
!!! ATATTTTGCTTTCTTATTAA+TGG - chr1_1:58436563-58436582 Msa0031660:CDS 15.0%
!!! AATTTATTTATTTTTGCTAC+AGG - chr1_1:58436668-58436687 Msa0031660:intron 15.0%
!! AATAGTATTGTATAAAAAGA+AGG + chr1_1:58436744-58436763 None:intergenic 15.0%
!!! ACATTTTCTAAAAATATTTC+AGG - chr1_1:58436786-58436805 Msa0031660:intron 15.0%
!! GTTTGCATATTTATATTAAT+AGG - chr1_1:58437419-58437438 Msa0031660:intron 15.0%
!! CATATTTATATTAATAGGAT+TGG - chr1_1:58437424-58437443 Msa0031660:intron 15.0%
!! TTTATTAATTCAAATTACCA+CGG - chr1_1:58437742-58437761 Msa0031660:intron 15.0%
!!! TATTCAGTTTTAATTATGAA+AGG - chr1_1:58438013-58438032 Msa0031660:intron 15.0%
!! TGAAAATAGTAAATAAAAGA+AGG - chr1_1:58438119-58438138 Msa0031660:intron 15.0%
!! ATTGACTAAAAAATAACAAA+TGG + chr1_1:58439470-58439489 None:intergenic 15.0%
!! TTAATGGTAAAAAAAACAAT+AGG - chr1_1:58440099-58440118 Msa0031660:intron 15.0%
!!! TTTTTAGCATTGATATAAAA+TGG + chr1_1:58440329-58440348 None:intergenic 15.0%
!! CTAATATAAATGAAAAGTTA+AGG + chr1_1:58440364-58440383 None:intergenic 15.0%
!!! ATGTAACAATTTTAATTACA+TGG - chr1_1:58441493-58441512 Msa0031660:intron 15.0%
!!! TGTAACAATTTTAATTACAT+GGG - chr1_1:58441494-58441513 Msa0031660:intron 15.0%
!! ATTTACAATACAATATTGTA+TGG - chr1_1:58442136-58442155 Msa0031660:intron 15.0%
!! TAATTTAGTTACTCAAAATT+GGG - chr1_1:58444645-58444664 Msa0031660:five_prime_UTR 15.0%
!!! GTTTTTCAATTTCATAGTTA+GGG - chr1_1:58434081-58434100 Msa0031660:intron 20.0%
!!! TCAATCTTATTTTTGGTTAT+TGG + chr1_1:58434898-58434917 None:intergenic 20.0%
!!! GATATAGTCAATCTTATTTT+TGG + chr1_1:58434905-58434924 None:intergenic 20.0%
!!! AAAAAAAAGCATCAAATATG+GGG + chr1_1:58435167-58435186 None:intergenic 20.0%
!! ATAGTAAAATTACCATTAGA+GGG + chr1_1:58435385-58435404 None:intergenic 20.0%
!! AATAGTAAAATTACCATTAG+AGG + chr1_1:58435386-58435405 None:intergenic 20.0%
!! CTTATATGTTATTATCTCTA+AGG - chr1_1:58435431-58435450 Msa0031660:CDS 20.0%
!! AAAGTTCAATTAATTAGAGA+AGG + chr1_1:58435479-58435498 None:intergenic 20.0%
!! TTCTCTAATTAATTGAACTT+TGG - chr1_1:58435478-58435497 Msa0031660:CDS 20.0%
!!! ATGTTTGAATATGTATCTTT+TGG - chr1_1:58435644-58435663 Msa0031660:intron 20.0%
!! CATAAAAAAAACTAAACAAC+AGG + chr1_1:58435887-58435906 None:intergenic 20.0%
!!! TTTAGTTTTTTTTATGTAGG+TGG - chr1_1:58435891-58435910 Msa0031660:intron 20.0%
!!! CATTTTTATCAGGTAAAAAT+GGG + chr1_1:58436081-58436100 None:intergenic 20.0%
!!! AATAAAAGACTAAGTATTGA+AGG + chr1_1:58436135-58436154 None:intergenic 20.0%
!!! TTACTGATTTAAATAATTGG+TGG - chr1_1:58436185-58436204 Msa0031660:intron 20.0%
!!! TACTGATTTAAATAATTGGT+GGG - chr1_1:58436186-58436205 Msa0031660:intron 20.0%
!! AAAAAAAATAAAGCCTTTCA+AGG + chr1_1:58436935-58436954 None:intergenic 20.0%
!!! TTTTTTTAAAAAAGCTTGCT+AGG - chr1_1:58437468-58437487 Msa0031660:intron 20.0%
!!! TTTTTTAAAAAAGCTTGCTA+GGG - chr1_1:58437469-58437488 Msa0031660:intron 20.0%
!! CATAACTATATATTGCATAA+AGG + chr1_1:58437577-58437596 None:intergenic 20.0%
!! CTTTATGCAATATATAGTTA+TGG - chr1_1:58437575-58437594 Msa0031660:intron 20.0%
!! TTAAAAGACATAAAACAAAG+TGG + chr1_1:58438039-58438058 None:intergenic 20.0%
!!! TATTTTAGATTAGATGCAAT+TGG - chr1_1:58438205-58438224 Msa0031660:intron 20.0%
!!! AACATTATCTTTGTTTTTCT+AGG - chr1_1:58438230-58438249 Msa0031660:intron 20.0%
!!! ACATTATCTTTGTTTTTCTA+GGG - chr1_1:58438231-58438250 Msa0031660:intron 20.0%
!!! TTATGCTCTTATTTATTTCT+TGG - chr1_1:58438801-58438820 Msa0031660:intron 20.0%
!!! ATTCTTTTCAAATATGAAAG+TGG - chr1_1:58440609-58440628 Msa0031660:intron 20.0%
!! TATTAGTTATTGTTTAGTCT+TGG - chr1_1:58440830-58440849 Msa0031660:intron 20.0%
!!! ATTAGTTATTGTTTAGTCTT+GGG - chr1_1:58440831-58440850 Msa0031660:intron 20.0%
!! ATAGAAAAACAAAATAACTG+AGG + chr1_1:58441118-58441137 None:intergenic 20.0%
!!! TTAATTACATGGGAAATTTT+TGG - chr1_1:58441504-58441523 Msa0031660:intron 20.0%
!! ACAACAATAATTCAACATAA+GGG + chr1_1:58441881-58441900 None:intergenic 20.0%
!! TACAACAATAATTCAACATA+AGG + chr1_1:58441882-58441901 None:intergenic 20.0%
!! TTGTGATAAAGAAATCTTTA+AGG + chr1_1:58442109-58442128 None:intergenic 20.0%
!! TCCAAATATTATAGTATAGA+TGG - chr1_1:58442300-58442319 Msa0031660:intron 20.0%
!! ACCATCTATACTATAATATT+TGG + chr1_1:58442304-58442323 None:intergenic 20.0%
!! ATATTATAGTATAGATGGTA+TGG - chr1_1:58442305-58442324 Msa0031660:intron 20.0%
!!! GTTTGAATTACAGTTTTTAT+TGG + chr1_1:58442440-58442459 None:intergenic 20.0%
!! TCCATACTATAATTCATAAA+AGG - chr1_1:58442545-58442564 Msa0031660:intron 20.0%
!!! TCCTTTTATGAATTATAGTA+TGG + chr1_1:58442549-58442568 None:intergenic 20.0%
!!! TAGGTATGTTTTTTATCTTT+TGG - chr1_1:58442716-58442735 Msa0031660:CDS 20.0%
!! ATCCTGAAATATTTAATACA+TGG - chr1_1:58443273-58443292 Msa0031660:intron 20.0%
!! TACCATGTATTAAATATTTC+AGG + chr1_1:58443278-58443297 None:intergenic 20.0%
!!! ATTTAATACATGGTAATGTT+AGG - chr1_1:58443283-58443302 Msa0031660:intron 20.0%
!! TTGAAAACATTAAATACACA+TGG + chr1_1:58443336-58443355 None:intergenic 20.0%
!!! TTTTTTAATCAATTCTTCAG+TGG - chr1_1:58443573-58443592 Msa0031660:intron 20.0%
!!! AAGAAGTACAATAATTATAG+AGG + chr1_1:58443674-58443693 None:intergenic 20.0%
!!! TACTGATTATGTTTTCTTTT+AGG - chr1_1:58443888-58443907 Msa0031660:intron 20.0%
!! CAACTGACAAAATATTAAAT+TGG + chr1_1:58444072-58444091 None:intergenic 20.0%
!! AAGAAAAATTCAACTTACAA+GGG + chr1_1:58444140-58444159 None:intergenic 20.0%
!! AAAGAAAAATTCAACTTACA+AGG + chr1_1:58444141-58444160 None:intergenic 20.0%
!!! TTCTATGCTGAAAATTTTAT+AGG - chr1_1:58444396-58444415 Msa0031660:CDS 20.0%
!!! TGTATATTCTTTGGAATTTT+TGG + chr1_1:58444619-58444638 None:intergenic 20.0%
!! TTACAACAATGTATATTCTT+TGG + chr1_1:58444628-58444647 None:intergenic 20.0%
!! GTAATTTAGTTACTCAAAAT+TGG - chr1_1:58444644-58444663 Msa0031660:five_prime_UTR 20.0%
!!! TCTTCTTTTTTACTAATACA+AGG + chr1_1:58444700-58444719 None:intergenic 20.0%
!!! GAAGGAGAATTGTTTTTATA+GGG + chr1_1:58433551-58433570 None:intergenic 25.0%
!!! AGAAGGAGAATTGTTTTTAT+AGG + chr1_1:58433552-58433571 None:intergenic 25.0%
!! AGAATTTTCTCTCTCAATTA+GGG - chr1_1:58433663-58433682 Msa0031660:three_prime_UTR 25.0%
! AAACCAAAACCAAGTATAAT+TGG + chr1_1:58434065-58434084 None:intergenic 25.0%
!!! GGTTTTTCAATTTCATAGTT+AGG - chr1_1:58434080-58434099 Msa0031660:intron 25.0%
! TTCAATAAGAAGTCATAAAC+TGG + chr1_1:58434153-58434172 None:intergenic 25.0%
!! TATTCTGTCTGTTATTTGTT+TGG - chr1_1:58434403-58434422 Msa0031660:intron 25.0%
!! ATTCTGTCTGTTATTTGTTT+GGG - chr1_1:58434404-58434423 Msa0031660:intron 25.0%
!!! TTTACTATTTTAGTGTGTAG+TGG - chr1_1:58434641-58434660 Msa0031660:intron 25.0%
! ATATTATTAACTGTTGCTGT+CGG - chr1_1:58434981-58435000 Msa0031660:intron 25.0%
!!! AAAAAAAGCATCAAATATGG+GGG + chr1_1:58435166-58435185 None:intergenic 25.0%
! GAGATAATAACATATAAGCT+TGG + chr1_1:58435429-58435448 None:intergenic 25.0%
!! AAAAAAGCATGTCAAATGTT+AGG + chr1_1:58435624-58435643 None:intergenic 25.0%
! TTATGAACTGTCAAATCTTA+TGG - chr1_1:58435699-58435718 Msa0031660:intron 25.0%
! ATTTCAGATATGTTAAACTG+TGG + chr1_1:58435760-58435779 None:intergenic 25.0%
!! CAGTTTAACATATCTGAAAT+TGG - chr1_1:58435760-58435779 Msa0031660:intron 25.0%
!!! TTTTTTTTATGTAGGTGGTT+AGG - chr1_1:58435896-58435915 Msa0031660:intron 25.0%
!!! CCATTTTTATCAGGTAAAAA+TGG + chr1_1:58436082-58436101 None:intergenic 25.0%
!!! CCATTTTTACCTGATAAAAA+TGG - chr1_1:58436079-58436098 Msa0031660:intron 25.0%
! GTAAATACATCATAGCTAAT+CGG + chr1_1:58436538-58436557 None:intergenic 25.0%
!!! TTAATCCTTGTTTCTATATC+AGG + chr1_1:58436704-58436723 None:intergenic 25.0%
! TAACGTGTTAAGAATATGAT+AGG - chr1_1:58436872-58436891 Msa0031660:CDS 25.0%
!! TCCTTTTCTTTATGAATGTA+TGG - chr1_1:58437163-58437182 Msa0031660:intron 25.0%
! ACCATACATTCATAAAGAAA+AGG + chr1_1:58437167-58437186 None:intergenic 25.0%
! TCTTTATGAATGTATGGTTA+TGG - chr1_1:58437169-58437188 Msa0031660:intron 25.0%
! AATAGTAAAACACTGAATAG+TGG - chr1_1:58437665-58437684 Msa0031660:intron 25.0%
! AAATGATGTTACAGGTAATT+TGG - chr1_1:58437819-58437838 Msa0031660:intron 25.0%
! TTTGGAAGCTTACAATAATT+TGG - chr1_1:58437921-58437940 Msa0031660:intron 25.0%
!! AATCTAAAATAGCACGTTTA+GGG + chr1_1:58438196-58438215 None:intergenic 25.0%
!! TAATCTAAAATAGCACGTTT+AGG + chr1_1:58438197-58438216 None:intergenic 25.0%
! CATGTATATATTTCCAAGAT+TGG + chr1_1:58438448-58438467 None:intergenic 25.0%
! CAATCTTGGAAATATATACA+TGG - chr1_1:58438446-58438465 Msa0031660:intron 25.0%
! TTGGAAATATATACATGGAA+TGG - chr1_1:58438451-58438470 Msa0031660:intron 25.0%
! TTGATTGAAATTGTTAATGC+AGG - chr1_1:58438536-58438555 Msa0031660:intron 25.0%
! ATTATAGCAAGGTTGTTATA+CGG + chr1_1:58438628-58438647 None:intergenic 25.0%
! TTATATAGAACAAATGCTCT+AGG + chr1_1:58438673-58438692 None:intergenic 25.0%
! TATTTCTTTGACAGTATTGT+AGG - chr1_1:58438774-58438793 Msa0031660:intron 25.0%
! ATTTCTTTGACAGTATTGTA+GGG - chr1_1:58438775-58438794 Msa0031660:intron 25.0%
! TATTTCTTGGACAATATTGT+AGG - chr1_1:58438814-58438833 Msa0031660:intron 25.0%
! ATTTCTTGGACAATATTGTA+GGG - chr1_1:58438815-58438834 Msa0031660:intron 25.0%
! TGAAATTCTGTTTATTTCAG+TGG - chr1_1:58439338-58439357 Msa0031660:CDS 25.0%
! GTTTATTGTATCTCTTATGA+TGG - chr1_1:58439509-58439528 Msa0031660:intron 25.0%
! AAGTATGAAGAAGACTTATT+TGG - chr1_1:58439973-58439992 Msa0031660:intron 25.0%
! AGTATGAAGAAGACTTATTT+GGG - chr1_1:58439974-58439993 Msa0031660:intron 25.0%
! GTGATTAAGGCAAAAATAAT+GGG + chr1_1:58440568-58440587 None:intergenic 25.0%
! AGTGATTAAGGCAAAAATAA+TGG + chr1_1:58440569-58440588 None:intergenic 25.0%
!!! ATTATTTTTGCCTTAATCAC+TGG - chr1_1:58440568-58440587 Msa0031660:intron 25.0%
! ATATCCAAAATCAAGATGAT+AGG + chr1_1:58440722-58440741 None:intergenic 25.0%
! AAGATCAACTCAATAACAAA+TGG - chr1_1:58441243-58441262 Msa0031660:intron 25.0%
! ATAGAGAACAGAAGAATATT+TGG + chr1_1:58441657-58441676 None:intergenic 25.0%
! TTGACAATGTATACATGTAT+AGG - chr1_1:58441682-58441701 Msa0031660:intron 25.0%
!!! TATAACCATTAAGGTTGATA+AGG + chr1_1:58441847-58441866 None:intergenic 25.0%
! TATTGTATGGAATTAAGTGT+TGG - chr1_1:58442149-58442168 Msa0031660:intron 25.0%
! AATATCCTTTGATAAGAAGT+AGG - chr1_1:58442267-58442286 Msa0031660:intron 25.0%
! ATATCCTTTGATAAGAAGTA+GGG - chr1_1:58442268-58442287 Msa0031660:intron 25.0%
! TGATCTTACTTATTGAGTAA+AGG - chr1_1:58442681-58442700 Msa0031660:intron 25.0%
! GAGTAAATGAGTTAATAAGA+TGG + chr1_1:58442916-58442935 None:intergenic 25.0%
! CTTTGTAAACGATTATAAAC+AGG - chr1_1:58443040-58443059 Msa0031660:intron 25.0%
! GAAATTATGTACATGTTGTA+AGG - chr1_1:58443084-58443103 Msa0031660:intron 25.0%
! CTTGTTTATTCAGAAAAATC+AGG - chr1_1:58443154-58443173 Msa0031660:intron 25.0%
! CAAATAAAAACTTATCCTCA+GGG + chr1_1:58443226-58443245 None:intergenic 25.0%
!!! ACAGAGCATATTTTAAAATG+TGG - chr1_1:58444431-58444450 Msa0031660:CDS 25.0%
!! TATTAGAAGATGTTTGCTTT+TGG - chr1_1:58444745-58444764 Msa0031660:five_prime_UTR 25.0%
! TTTCTTCTTCTCTACGATTT+TGG + chr1_1:58433637-58433656 None:intergenic 30.0%
! GAGAATTTTCTCTCTCAATT+AGG - chr1_1:58433662-58433681 Msa0031660:three_prime_UTR 30.0%
TTTCATAGTTAGGGTTTCTT+AGG - chr1_1:58434090-58434109 Msa0031660:intron 30.0%
TTCATAGTTAGGGTTTCTTA+GGG - chr1_1:58434091-58434110 Msa0031660:intron 30.0%
ACCAAGGAGTAGTAAATTAT+CGG + chr1_1:58434357-58434376 None:intergenic 30.0%
ACAGAATAGAAACATTTACC+TGG + chr1_1:58434391-58434410 None:intergenic 30.0%
GGGTTCATATTTATAATGCT+TGG - chr1_1:58434424-58434443 Msa0031660:intron 30.0%
!!! AATTGAACTTTGCTTTTTGC+AGG - chr1_1:58434690-58434709 Msa0031660:intron 30.0%
ATCAAGAATACATACCTCAA+TGG + chr1_1:58434758-58434777 None:intergenic 30.0%
GGTTATTGGACAACAATATT+TGG + chr1_1:58434884-58434903 None:intergenic 30.0%
TTTAGTACTAACACACAAAC+TGG - chr1_1:58434934-58434953 Msa0031660:intron 30.0%
AGCGTATAACATAGCAAAAA+AGG + chr1_1:58435195-58435214 None:intergenic 30.0%
TTGAAGCAACTAATCAAGAA+TGG + chr1_1:58435223-58435242 None:intergenic 30.0%
TTCAATATTTATCCCTCTGT+TGG - chr1_1:58435238-58435257 Msa0031660:CDS 30.0%
!! TGTTATTATCTCTAAGGCAT+AGG - chr1_1:58435437-58435456 Msa0031660:CDS 30.0%
!! GTTATTATCTCTAAGGCATA+GGG - chr1_1:58435438-58435457 Msa0031660:CDS 30.0%
GTAATCTAATGAAAGCTCAA+GGG - chr1_1:58435580-58435599 Msa0031660:intron 30.0%
AAATGTTAGGACTTACTTCT+TGG + chr1_1:58435611-58435630 None:intergenic 30.0%
ACTGTCAAATCTTATGGATA+AGG - chr1_1:58435705-58435724 Msa0031660:intron 30.0%
!!! AAGCCAAATTAAGAGTGTTT+TGG + chr1_1:58435984-58436003 None:intergenic 30.0%
!! ACATTGGTGTTTTTCATTCT+GGG + chr1_1:58436036-58436055 None:intergenic 30.0%
TGATTTAAATAATTGGTGGG+TGG - chr1_1:58436189-58436208 Msa0031660:intron 30.0%
! GAAGTTACTAATTGCACTTT+TGG - chr1_1:58436595-58436614 Msa0031660:intron 30.0%
GAATTCCTGATATAGAAACA+AGG - chr1_1:58436696-58436715 Msa0031660:CDS 30.0%
GTGTTAAGAATATGATAGGT+TGG - chr1_1:58436876-58436895 Msa0031660:CDS 30.0%
!! GATGCAACTAGAATTTTGAT+CGG - chr1_1:58436898-58436917 Msa0031660:CDS 30.0%
ATAAGATCAGTGCAAAGATA+TGG - chr1_1:58437103-58437122 Msa0031660:CDS 30.0%
TAAGATCAGTGCAAAGATAT+GGG - chr1_1:58437104-58437123 Msa0031660:CDS 30.0%
AGATATGGGATAGTAAGAAA+TGG - chr1_1:58437118-58437137 Msa0031660:CDS 30.0%
TGCAATGGTTATACAACTAA+TGG + chr1_1:58437295-58437314 None:intergenic 30.0%
! ACTATATCACAGTTTTGCAA+TGG + chr1_1:58437310-58437329 None:intergenic 30.0%
AACTGTGATATAGTATCATG+TGG - chr1_1:58437316-58437335 Msa0031660:CDS 30.0%
TCCTTCGTTGACATTAATAA+TGG + chr1_1:58437523-58437542 None:intergenic 30.0%
AAGGAGTTTCATAGTTATGT+TGG - chr1_1:58437538-58437557 Msa0031660:intron 30.0%
ATGCAATATATAGTTATGGC+TGG - chr1_1:58437579-58437598 Msa0031660:intron 30.0%
GTCCTTTATTCTGATATCTA+TGG - chr1_1:58437700-58437719 Msa0031660:intron 30.0%
TGCCATAGATATCAGAATAA+AGG + chr1_1:58437705-58437724 None:intergenic 30.0%
TGTGTTACAAATGATGTTAC+AGG - chr1_1:58437811-58437830 Msa0031660:intron 30.0%
TTGTAAGCTTCCAAAAATCT+GGG + chr1_1:58437916-58437935 None:intergenic 30.0%
ATTGTAAGCTTCCAAAAATC+TGG + chr1_1:58437917-58437936 None:intergenic 30.0%
GAAGCTTACAATAATTTGGT+TGG - chr1_1:58437925-58437944 Msa0031660:intron 30.0%
TGTTTAGTTGAAAATGCTGA+GGG - chr1_1:58437968-58437987 Msa0031660:intron 30.0%
AAGAACATACATTATAGCAC+TGG + chr1_1:58438296-58438315 None:intergenic 30.0%
AAATTGAGTAGGAATCTAGT+GGG + chr1_1:58438359-58438378 None:intergenic 30.0%
AAAATTGAGTAGGAATCTAG+TGG + chr1_1:58438360-58438379 None:intergenic 30.0%
AAATTGTTAATGCAGGAACA+TGG - chr1_1:58438543-58438562 Msa0031660:intron 30.0%
GCTGCTTATATATTATAGCA+AGG + chr1_1:58438639-58438658 None:intergenic 30.0%
TGCTATAATATATAAGCAGC+AGG - chr1_1:58438639-58438658 Msa0031660:intron 30.0%
ATATAACCACGATAGAACAT+AGG - chr1_1:58438687-58438706 Msa0031660:intron 30.0%
TTTCTTTGACAGTATTGTAG+GGG - chr1_1:58438776-58438795 Msa0031660:intron 30.0%
TTTCTTGGACAATATTGTAG+GGG - chr1_1:58438816-58438835 Msa0031660:intron 30.0%
AAACAGAGGCAATACTTATA+AGG - chr1_1:58438910-58438929 Msa0031660:CDS 30.0%
ATTAGCATACCTATCCTTAT+AGG + chr1_1:58439029-58439048 None:intergenic 30.0%
! TTTTGCTTCAGTTTCAATGT+TGG + chr1_1:58439072-58439091 None:intergenic 30.0%
CATAATATTGAAATTGTGCC+TGG - chr1_1:58439146-58439165 Msa0031660:intron 30.0%
!! GGTTATACTACCATTTTGAT+TGG + chr1_1:58440009-58440028 None:intergenic 30.0%
TAACCAGATTTGTAGTATAG+TGG - chr1_1:58440024-58440043 Msa0031660:CDS 30.0%
!! CAACATGTGAAGTGTTTTAA+TGG - chr1_1:58440083-58440102 Msa0031660:intron 30.0%
TTGTTATGATATGTTGTTCG+TGG - chr1_1:58440793-58440812 Msa0031660:intron 30.0%
AAATGTTCAAGGAAGTAGAA+GGG - chr1_1:58440989-58441008 Msa0031660:intron 30.0%
TCAGAAGACAAATTAATGTC+AGG - chr1_1:58441016-58441035 Msa0031660:intron 30.0%
GTTATGAAAGACTAAGGATT+GGG - chr1_1:58441416-58441435 Msa0031660:intron 30.0%
ATTGTTACATATCTCTCACA+AGG + chr1_1:58441483-58441502 None:intergenic 30.0%
CAAATCCTTATCAACCTTAA+TGG - chr1_1:58441839-58441858 Msa0031660:CDS 30.0%
CAACCTTAATGGTTATACAA+AGG - chr1_1:58441850-58441869 Msa0031660:CDS 30.0%
CTACCTTTGTATAACCATTA+AGG + chr1_1:58441856-58441875 None:intergenic 30.0%
TGAGAATACTATGATATGAG+TGG - chr1_1:58442218-58442237 Msa0031660:intron 30.0%
AGAATATCCCATTAGTTAAG+AGG - chr1_1:58442410-58442429 Msa0031660:intron 30.0%
GAATATCCCATTAGTTAAGA+GGG - chr1_1:58442411-58442430 Msa0031660:intron 30.0%
! CAAACTATTTAGTGCTCTTT+TGG - chr1_1:58442455-58442474 Msa0031660:intron 30.0%
ATATAGCTAATCCTACTTAG+TGG - chr1_1:58442591-58442610 Msa0031660:intron 30.0%
TATAGCTAATCCTACTTAGT+GGG - chr1_1:58442592-58442611 Msa0031660:intron 30.0%
!! TTTGGTTATTTCTGATTGCA+TGG - chr1_1:58442734-58442753 Msa0031660:intron 30.0%
! ACCAGTTCAAGTTTCATATA+TGG - chr1_1:58442812-58442831 Msa0031660:intron 30.0%
! CCAGTTCAAGTTTCATATAT+GGG - chr1_1:58442813-58442832 Msa0031660:intron 30.0%
AGCTACATACATAGATTACT+TGG - chr1_1:58442854-58442873 Msa0031660:intron 30.0%
! GTATGTATGTTGACTATACA+TGG - chr1_1:58443106-58443125 Msa0031660:intron 30.0%
GCAAATAAAAACTTATCCTC+AGG + chr1_1:58443227-58443246 None:intergenic 30.0%
CTTCAATCAACTTTACAAGA+TGG - chr1_1:58443250-58443269 Msa0031660:intron 30.0%
AAACATAAGCAGACATGTAA+AGG + chr1_1:58443374-58443393 None:intergenic 30.0%
!!! GCTTATGTTTGTGTTGTTTT+AGG - chr1_1:58443384-58443403 Msa0031660:intron 30.0%
ATTAAGCAGCACATACAAAT+AGG + chr1_1:58443637-58443656 None:intergenic 30.0%
!!! TGTGCTGCTTAATTTTTTTG+TGG - chr1_1:58443644-58443663 Msa0031660:intron 30.0%
TCTGTGAAGATAATTTGATC+AGG + chr1_1:58443724-58443743 None:intergenic 30.0%
! GTCACTTAAATAGTTTTCGT+TGG - chr1_1:58443856-58443875 Msa0031660:intron 30.0%
CACAGGAACAGATATATTAT+GGG - chr1_1:58443931-58443950 Msa0031660:CDS 30.0%
TTTCATACTACATGGTTTCA+TGG + chr1_1:58444196-58444215 None:intergenic 30.0%
TCATACTCTTTCATACTACA+TGG + chr1_1:58444204-58444223 None:intergenic 30.0%
TATAATTTGAACTCACCCAT+CGG + chr1_1:58444326-58444345 None:intergenic 30.0%
! AATTTTCAGCATAGAACTTG+AGG + chr1_1:58444392-58444411 None:intergenic 30.0%
TCCAGATGATAAATAGACAT+AGG - chr1_1:58444516-58444535 Msa0031660:five_prime_UTR 30.0%
TCCTATGTCTATTTATCATC+TGG + chr1_1:58444520-58444539 None:intergenic 30.0%
TGTTAAATAGTCATTCCTGT+CGG - chr1_1:58444787-58444806 Msa0031660:five_prime_UTR 30.0%
CTTTATCTTTCCTACATCGA+CGG - chr1_1:58433493-58433512 Msa0031660:three_prime_UTR 35.0%
TTATAGGGAGATGAGAATCT+TGG + chr1_1:58433536-58433555 None:intergenic 35.0%
GGTGAAGTTTCTGTTAAGAT+CGG + chr1_1:58433599-58433618 None:intergenic 35.0%
!! CGATTTTGGAAGATGTCTAT+GGG + chr1_1:58433623-58433642 None:intergenic 35.0%
!! ACGATTTTGGAAGATGTCTA+TGG + chr1_1:58433624-58433643 None:intergenic 35.0%
TTGAGAGAGAAAATTCTCGA+GGG + chr1_1:58433660-58433679 None:intergenic 35.0%
ATTGAGAGAGAAAATTCTCG+AGG + chr1_1:58433661-58433680 None:intergenic 35.0%
AACATGAAAGGAATTGGATC+GGG + chr1_1:58433723-58433742 None:intergenic 35.0%
GAACATGAAAGGAATTGGAT+CGG + chr1_1:58433724-58433743 None:intergenic 35.0%
AAAGGGAACATGAAAGGAAT+TGG + chr1_1:58433729-58433748 None:intergenic 35.0%
TGAATCAGTGAACGAAGAAA+GGG + chr1_1:58433746-58433765 None:intergenic 35.0%
TCATAGTTAGGGTTTCTTAG+GGG - chr1_1:58434092-58434111 Msa0031660:intron 35.0%
GAATCAATTTCGTACTTTCG+AGG - chr1_1:58434170-58434189 Msa0031660:intron 35.0%
GTACTTTCGAGGAATATGAT+TGG - chr1_1:58434181-58434200 Msa0031660:intron 35.0%
! CGAGGAATATGATTGGTTAA+CGG - chr1_1:58434188-58434207 Msa0031660:intron 35.0%
ACCGATAATTTACTACTCCT+TGG - chr1_1:58434353-58434372 Msa0031660:CDS 35.0%
!! CGAAAAATGAAGAAGCACTT+AGG - chr1_1:58434524-58434543 Msa0031660:CDS 35.0%
TAATATGGCAAATGCATGGA+AGG - chr1_1:58434576-58434595 Msa0031660:CDS 35.0%
!!! CTTTGCTTTTTGCAGGAAAA+AGG - chr1_1:58434697-58434716 Msa0031660:intron 35.0%
TCAAGTAATAGCGAATTGCA+AGG + chr1_1:58434732-58434751 None:intergenic 35.0%
CTATTACTTGATTGCCATTG+AGG - chr1_1:58434741-58434760 Msa0031660:intron 35.0%
TCACAAATGTTAGCTGTGTT+TGG - chr1_1:58435017-58435036 Msa0031660:CDS 35.0%
ATTGGCATCAAACAAACTCA+AGG + chr1_1:58435083-58435102 None:intergenic 35.0%
TGTCATTAACTATGTTCTGC+AGG - chr1_1:58435536-58435555 Msa0031660:intron 35.0%
GTTGATGCTCATAGTAACTT+GGG - chr1_1:58435558-58435577 Msa0031660:intron 35.0%
GGTAATCTAATGAAAGCTCA+AGG - chr1_1:58435579-58435598 Msa0031660:intron 35.0%
TATGTTAAACTGTGGCAGAA+AGG + chr1_1:58435752-58435771 None:intergenic 35.0%
TACAATAATAGTCCCGATCT+TGG - chr1_1:58435937-58435956 Msa0031660:intron 35.0%
GAGCCAAAACACTCTTAATT+TGG - chr1_1:58435978-58435997 Msa0031660:intron 35.0%
!! GACATTGGTGTTTTTCATTC+TGG + chr1_1:58436037-58436056 None:intergenic 35.0%
AAAACACCAATGTCTTCCAT+TGG - chr1_1:58436043-58436062 Msa0031660:intron 35.0%
TCTGTATCGAACTGTGAATT+TGG + chr1_1:58436223-58436242 None:intergenic 35.0%
AAGTTGTTGTCTTCAAAGCA+TGG - chr1_1:58436247-58436266 Msa0031660:intron 35.0%
! CAGAATCTAACATTTTGTGC+AGG - chr1_1:58436324-58436343 Msa0031660:intron 35.0%
ATTTGACCATGCAATAGCAA+AGG + chr1_1:58436389-58436408 None:intergenic 35.0%
AGCATGTGAATATGAAAGTG+AGG + chr1_1:58436474-58436493 None:intergenic 35.0%
TGCTTGAATGAACTTCTGTT+AGG - chr1_1:58436490-58436509 Msa0031660:CDS 35.0%
ATACATCATAGCTAATCGGA+CGG + chr1_1:58436534-58436553 None:intergenic 35.0%
GTGCAATTAGTAACTTCTAC+AGG + chr1_1:58436592-58436611 None:intergenic 35.0%
TTACCTTGTATACATTCCCA+AGG + chr1_1:58436855-58436874 None:intergenic 35.0%
!! AGAATTTTGATCGGCATTGA+TGG - chr1_1:58436907-58436926 Msa0031660:CDS 35.0%
!!! ATTTTTTTTCCCCCTTCATC+AGG - chr1_1:58436946-58436965 Msa0031660:CDS 35.0%
TAACATGCAATAGCTTCTTG+AGG + chr1_1:58436983-58437002 None:intergenic 35.0%
TTGGTCTCCAGGATTTATTT+GGG - chr1_1:58437216-58437235 Msa0031660:intron 35.0%
TTAAAGCCCCAAATAAATCC+TGG + chr1_1:58437226-58437245 None:intergenic 35.0%
GCCATTATTAATGTCAACGA+AGG - chr1_1:58437519-58437538 Msa0031660:intron 35.0%
TATCAATATGCAGCAAAGCA+TGG + chr1_1:58437632-58437651 None:intergenic 35.0%
GCTTTGCTGCATATTGATAA+TGG - chr1_1:58437633-58437652 Msa0031660:intron 35.0%
TAAATTCAGTGCAACTAGCA+TGG + chr1_1:58437790-58437809 None:intergenic 35.0%
ACCTTGCTCATAATGTATAC+TGG + chr1_1:58437845-58437864 None:intergenic 35.0%
TGTAAGCTTCCAAAAATCTG+GGG + chr1_1:58437915-58437934 None:intergenic 35.0%
CTGTTTAGTTGAAAATGCTG+AGG - chr1_1:58437967-58437986 Msa0031660:intron 35.0%
ACCATTAGCATGAAGATAGA+GGG + chr1_1:58438485-58438504 None:intergenic 35.0%
TACCATTAGCATGAAGATAG+AGG + chr1_1:58438486-58438505 None:intergenic 35.0%
ATGCTAATGGTAGTAGTTTG+TGG - chr1_1:58438494-58438513 Msa0031660:intron 35.0%
! TGCTAATGGTAGTAGTTTGT+GGG - chr1_1:58438495-58438514 Msa0031660:intron 35.0%
! TAGTAGTTTGTGGGTTATGT+GGG - chr1_1:58438504-58438523 Msa0031660:intron 35.0%
AGTTATCCTATGTTCTATCG+TGG + chr1_1:58438696-58438715 None:intergenic 35.0%
TAGAACATAGGATAACTGCA+AGG - chr1_1:58438699-58438718 Msa0031660:intron 35.0%
AACTGCAAGGATTATCAACT+TGG - chr1_1:58438712-58438731 Msa0031660:intron 35.0%
GGCAATACTTATAAGGAGAT+TGG - chr1_1:58438917-58438936 Msa0031660:CDS 35.0%
! TAATTTGGCTTCTGCCTATA+AGG - chr1_1:58439012-58439031 Msa0031660:intron 35.0%
! TGGATCTTCTGACATCTTTT+GGG - chr1_1:58439166-58439185 Msa0031660:intron 35.0%
GAAACCTAAAACTTCTGATG+TGG + chr1_1:58439209-58439228 None:intergenic 35.0%
CTAGACATCATAACGTTAAC+AGG + chr1_1:58439292-58439311 None:intergenic 35.0%
TTATTTCAGTGGACATGTAG+AGG - chr1_1:58439349-58439368 Msa0031660:CDS 35.0%
CAATCTTCTACATACACTTC+AGG - chr1_1:58439433-58439452 Msa0031660:CDS 35.0%
GACAACAGAGGTTTCTAATA+AGG + chr1_1:58439632-58439651 None:intergenic 35.0%
AGAAGAAGCAAAGTGAAAGA+AGG - chr1_1:58439893-58439912 Msa0031660:intron 35.0%
TTCATGTTTGAAGGAGATCT+AGG - chr1_1:58439947-58439966 Msa0031660:intron 35.0%
TCATGTTTGAAGGAGATCTA+GGG - chr1_1:58439948-58439967 Msa0031660:intron 35.0%
AGTCCACTATACTACAAATC+TGG + chr1_1:58440030-58440049 None:intergenic 35.0%
CAAGAATGAACCAGTGATTA+AGG + chr1_1:58440581-58440600 None:intergenic 35.0%
!! CTTAATCACTGGTTCATTCT+TGG - chr1_1:58440579-58440598 Msa0031660:intron 35.0%
TATGAAAGTGGTCGTTGTAT+TGG - chr1_1:58440621-58440640 Msa0031660:intron 35.0%
ATGAAAGTGGTCGTTGTATT+GGG - chr1_1:58440622-58440641 Msa0031660:intron 35.0%
! CTCTCCTATCATCTTGATTT+TGG - chr1_1:58440715-58440734 Msa0031660:intron 35.0%
!! GGATAATGGAGTGATAACAA+AGG + chr1_1:58440862-58440881 None:intergenic 35.0%
CAAATGTTCAAGGAAGTAGA+AGG - chr1_1:58440988-58441007 Msa0031660:intron 35.0%
TAATTTCCAGAGCAAGCATT+GGG + chr1_1:58441201-58441220 None:intergenic 35.0%
GGTTATGAAAGACTAAGGAT+TGG - chr1_1:58441415-58441434 Msa0031660:intron 35.0%
TTACATATCTCTCACAAGGA+GGG + chr1_1:58441479-58441498 None:intergenic 35.0%
TATGCACAACAGAAAGAATG+TGG - chr1_1:58441594-58441613 Msa0031660:intron 35.0%
!! GAATGTGGAGGTATTTAACT+TGG - chr1_1:58441609-58441628 Msa0031660:intron 35.0%
GATAGCAAAATTGATCAACG+AGG - chr1_1:58441808-58441827 Msa0031660:intron 35.0%
TTTAGTACTTTGATCCGTGA+AGG - chr1_1:58442026-58442045 Msa0031660:intron 35.0%
TTAGTACTTTGATCCGTGAA+GGG - chr1_1:58442027-58442046 Msa0031660:intron 35.0%
ACTACCCTACTTCTTATCAA+AGG + chr1_1:58442275-58442294 None:intergenic 35.0%
TATACCTTCCTTATCCTTAC+TGG + chr1_1:58442382-58442401 None:intergenic 35.0%
! GATAAGGAAGGTATAGAAGA+GGG - chr1_1:58442387-58442406 Msa0031660:intron 35.0%
! AAGTTTTTCTTGCATGCCAA+TGG - chr1_1:58442491-58442510 Msa0031660:intron 35.0%
ATAATATGGAGACTTGCCAT+TGG + chr1_1:58442510-58442529 None:intergenic 35.0%
AAAACTTTCACCCACTAAGT+AGG + chr1_1:58442605-58442624 None:intergenic 35.0%
GATCAGCTTATAAATTCACC+AGG + chr1_1:58442666-58442685 None:intergenic 35.0%
!! GTAAAGGCTTTGAATTGTGT+AGG - chr1_1:58442697-58442716 Msa0031660:CDS 35.0%
!!! GTGCAATTGTCCTTTTTTCA+GGG - chr1_1:58442756-58442775 Msa0031660:intron 35.0%
ATTTCTTGCACCCTGAAAAA+AGG + chr1_1:58442769-58442788 None:intergenic 35.0%
CCCATATATGAAACTTGAAC+TGG + chr1_1:58442816-58442835 None:intergenic 35.0%
GTTTCATATATGGGATTTCC+TGG - chr1_1:58442822-58442841 Msa0031660:intron 35.0%
GTAATCTATGTATGTAGCTC+CGG + chr1_1:58442853-58442872 None:intergenic 35.0%
AATGAGTTAATAAGATGGCC+TGG + chr1_1:58442911-58442930 None:intergenic 35.0%
TAGATATGTGCATACTGAAG+AGG + chr1_1:58442987-58443006 None:intergenic 35.0%
TCGTTTACAAAGTAGCAATG+CGG + chr1_1:58443032-58443051 None:intergenic 35.0%
!! CAGGTTTGTTGTTATGAACT+TGG - chr1_1:58443059-58443078 Msa0031660:intron 35.0%
CTGAATAAACAAGTTACCCA+GGG + chr1_1:58443147-58443166 None:intergenic 35.0%
TCTGAATAAACAAGTTACCC+AGG + chr1_1:58443148-58443167 None:intergenic 35.0%
AGACCATAATCTGATCGTTT+GGG + chr1_1:58443203-58443222 None:intergenic 35.0%
CAGACATGTAAAGGATGATA+TGG + chr1_1:58443365-58443384 None:intergenic 35.0%
!! CGTGTGTTTTTGCAATGTTT+GGG - chr1_1:58443546-58443565 Msa0031660:CDS 35.0%
!!! AGTGGTTTTGACATGGATAA+TGG + chr1_1:58443599-58443618 None:intergenic 35.0%
ATTATCCATGTCAAAACCAC+TGG - chr1_1:58443598-58443617 Msa0031660:intron 35.0%
TTATCCATGTCAAAACCACT+GGG - chr1_1:58443599-58443618 Msa0031660:intron 35.0%
AGGAAAATAAAATCTCCCAG+TGG + chr1_1:58443617-58443636 None:intergenic 35.0%
TTCACAGATGTTGCAATGAA+GGG - chr1_1:58443736-58443755 Msa0031660:CDS 35.0%
CCATAATATATCTGTTCCTG+TGG + chr1_1:58443933-58443952 None:intergenic 35.0%
CCACAGGAACAGATATATTA+TGG - chr1_1:58443930-58443949 Msa0031660:CDS 35.0%
TCTTGAGAAAATGGCTACTA+GGG - chr1_1:58443979-58443998 Msa0031660:CDS 35.0%
TTCAACTTACAAGGGAGATT+AGG + chr1_1:58444132-58444151 None:intergenic 35.0%
TTGAGGTTAAGTAACTGTGT+AGG + chr1_1:58444375-58444394 None:intergenic 35.0%
TAGGAATACCGTATTAGAGA+CGG - chr1_1:58444535-58444554 Msa0031660:five_prime_UTR 35.0%
! TCAAAATTGGGTTGCGTATT+TGG - chr1_1:58444657-58444676 Msa0031660:five_prime_UTR 35.0%
CGTATTTGGTTACAGTTGTT+GGG - chr1_1:58444671-58444690 Msa0031660:five_prime_UTR 35.0%
CAGGAATGACTATTTAACAC+AGG + chr1_1:58444786-58444805 None:intergenic 35.0%
!! TTTTGGAAGATGTCTATGGG+AGG + chr1_1:58433620-58433639 None:intergenic 40.0%
ACGAAGAAAGGGAACATGAA+AGG + chr1_1:58433735-58433754 None:intergenic 40.0%
GTGAATCAGTGAACGAAGAA+AGG + chr1_1:58433747-58433766 None:intergenic 40.0%
CTAGAATCATGAGCGTGTAA+AGG + chr1_1:58433963-58433982 None:intergenic 40.0%
! GCGCCAATTATACTTGGTTT+TGG - chr1_1:58434059-58434078 Msa0031660:CDS 40.0%
GCACATCAAATGTACAAGAG+TGG - chr1_1:58434272-58434291 Msa0031660:CDS 40.0%
AGTAAATTATCGGTGCGAAG+CGG + chr1_1:58434347-58434366 None:intergenic 40.0%
CCTGGTAATAAATTGCACCA+AGG + chr1_1:58434373-58434392 None:intergenic 40.0%
! CCTTGGTGCAATTTATTACC+AGG - chr1_1:58434370-58434389 Msa0031660:intron 40.0%
!!! TTGTTTTTGCGTGAATTGCG+TGG - chr1_1:58434457-58434476 Msa0031660:intron 40.0%
!! GCATGATTTTGATATGTGCG+TGG - chr1_1:58434501-58434520 Msa0031660:CDS 40.0%
TGCTGAGTGTTACGGTAATA+TGG - chr1_1:58434561-58434580 Msa0031660:CDS 40.0%
ACGGTAATATGGCAAATGCA+TGG - chr1_1:58434572-58434591 Msa0031660:CDS 40.0%
CTAATGTGCCACAACTTTGT+TGG - chr1_1:58434612-58434631 Msa0031660:intron 40.0%
AAACACGTCCAACAAAGTTG+TGG + chr1_1:58434623-58434642 None:intergenic 40.0%
! CGTGAACTTACATGTTGCTT+TGG - chr1_1:58434808-58434827 Msa0031660:intron 40.0%
ACACACAAACTGGATTCTGT+TGG - chr1_1:58434944-58434963 Msa0031660:intron 40.0%
AACTCAAGGTGAGGCTTATA+TGG + chr1_1:58435069-58435088 None:intergenic 40.0%
CATCAAACAAACTCAAGGTG+AGG + chr1_1:58435078-58435097 None:intergenic 40.0%
GACCATGCATCAGCAAAATT+GGG + chr1_1:58435284-58435303 None:intergenic 40.0%
TGACCATGCATCAGCAAAAT+TGG + chr1_1:58435285-58435304 None:intergenic 40.0%
!! ACTTGCTATCAACCCTCTAA+TGG - chr1_1:58435370-58435389 Msa0031660:intron 40.0%
! GGTTGATGCTCATAGTAACT+TGG - chr1_1:58435557-58435576 Msa0031660:intron 40.0%
TCTAATGAAAGCTCAAGGGT+TGG - chr1_1:58435584-58435603 Msa0031660:intron 40.0%
TCAATGCAGTTCACCAAGAT+CGG + chr1_1:58435953-58435972 None:intergenic 40.0%
! TTGGTGAACTGCATTGATGT+TGG - chr1_1:58435956-58435975 Msa0031660:intron 40.0%
GTATGACCAATGGAAGACAT+TGG + chr1_1:58436052-58436071 None:intergenic 40.0%
!!! AGCACATGGCCATTTTTATC+AGG + chr1_1:58436091-58436110 None:intergenic 40.0%
TGATAAAAATGGCCATGTGC+TGG - chr1_1:58436090-58436109 Msa0031660:intron 40.0%
ACTATTTGCAGTCTTGCAGA+TGG + chr1_1:58436304-58436323 None:intergenic 40.0%
!! AACCTACCTTTGCTATTGCA+TGG - chr1_1:58436380-58436399 Msa0031660:intron 40.0%
ATTGCATGGTCAAATCTTGC+TGG - chr1_1:58436394-58436413 Msa0031660:intron 40.0%
! AAATCTTGCTGGTCTGTTCA+TGG - chr1_1:58436405-58436424 Msa0031660:intron 40.0%
CGGACGGTCTGATTTATAAA+AGG + chr1_1:58436518-58436537 None:intergenic 40.0%
CAAGGTTCAAGTATGCATCA+GGG + chr1_1:58436837-58436856 None:intergenic 40.0%
CTGATGCATACTTGAACCTT+GGG - chr1_1:58436836-58436855 Msa0031660:intron 40.0%
GAACCTTGGGAATGTATACA+AGG - chr1_1:58436849-58436868 Msa0031660:intron 40.0%
ATCAACATGCTCTTCAGACA+CGG - chr1_1:58437002-58437021 Msa0031660:intron 40.0%
TAAACACTGATCGATGACCT+TGG - chr1_1:58437197-58437216 Msa0031660:intron 40.0%
CAAATAAATCCTGGAGACCA+AGG + chr1_1:58437217-58437236 None:intergenic 40.0%
CTTGGTCTCCAGGATTTATT+TGG - chr1_1:58437215-58437234 Msa0031660:intron 40.0%
TGGTCTCCAGGATTTATTTG+GGG - chr1_1:58437217-58437236 Msa0031660:intron 40.0%
!! ATAGTTATGTTGGCTCCTCA+TGG - chr1_1:58437548-58437567 Msa0031660:intron 40.0%
ATTGCATAAAGGAAGCCATG+AGG + chr1_1:58437566-58437585 None:intergenic 40.0%
GTTTACTAAATTGCAAGCCG+TGG + chr1_1:58437762-58437781 None:intergenic 40.0%
GCCAGTATACATTATGAGCA+AGG - chr1_1:58437841-58437860 Msa0031660:intron 40.0%
ACATTATGAGCAAGGTCAAC+TGG - chr1_1:58437849-58437868 Msa0031660:intron 40.0%
! AAATGCTGAGGGTTTCGTTT+TGG - chr1_1:58437979-58437998 Msa0031660:intron 40.0%
TGAAACCCAGAAACAACACT+CGG - chr1_1:58438156-58438175 Msa0031660:intron 40.0%
!! TGTTTCCGAGTGTTGTTTCT+GGG + chr1_1:58438164-58438183 None:intergenic 40.0%
!! TTGTTTCCGAGTGTTGTTTC+TGG + chr1_1:58438165-58438184 None:intergenic 40.0%
! AAAATAGCACGTTTAGGGTC+TGG + chr1_1:58438191-58438210 None:intergenic 40.0%
!! GGTAATGCTCTGAAAGATGT+TGG - chr1_1:58438252-58438271 Msa0031660:intron 40.0%
! GTAGTAGTTTGTGGGTTATG+TGG - chr1_1:58438503-58438522 Msa0031660:intron 40.0%
TTGTTAATGCAGGAACATGG+TGG - chr1_1:58438546-58438565 Msa0031660:intron 40.0%
GCTACACTAAATGTAACCAC+TGG - chr1_1:58438592-58438611 Msa0031660:intron 40.0%
TGCCATATCTTGCTACAATG+AGG - chr1_1:58438850-58438869 Msa0031660:CDS 40.0%
GACCTCATTGTAGCAAGATA+TGG + chr1_1:58438855-58438874 None:intergenic 40.0%
TAATCGCACGTATGTAATCC+TGG + chr1_1:58438961-58438980 None:intergenic 40.0%
!! GTTTCAATGTTGGAGGCATT+GGG + chr1_1:58439062-58439081 None:intergenic 40.0%
! AGTTTCAATGTTGGAGGCAT+TGG + chr1_1:58439063-58439082 None:intergenic 40.0%
TGCTTCAGTTTCAATGTTGG+AGG + chr1_1:58439069-58439088 None:intergenic 40.0%
CAAAAGATGTCAGAAGATCC+AGG + chr1_1:58439167-58439186 None:intergenic 40.0%
! CTGGATCTTCTGACATCTTT+TGG - chr1_1:58439165-58439184 Msa0031660:intron 40.0%
! GGATCTTCTGACATCTTTTG+GGG - chr1_1:58439167-58439186 Msa0031660:intron 40.0%
! GTGTCCACATCAGAAGTTTT+AGG - chr1_1:58439202-58439221 Msa0031660:intron 40.0%
ATCACCAACAGATGTTGCAA+GGG + chr1_1:58439267-58439286 None:intergenic 40.0%
AATCACCAACAGATGTTGCA+AGG + chr1_1:58439268-58439287 None:intergenic 40.0%
AGAAGATTGCAAGTTGCTTC+AGG + chr1_1:58439422-58439441 None:intergenic 40.0%
GAAACCTCTGTTGTCAAAAG+CGG - chr1_1:58439637-58439656 Msa0031660:intron 40.0%
CTTCTCTTTGACCGTGAAAA+AGG + chr1_1:58439814-58439833 None:intergenic 40.0%
AAGTGAAAGAAGGTCGTTGT+TGG - chr1_1:58439903-58439922 Msa0031660:intron 40.0%
! GTCGTTGTTGGTTGTTTATG+CGG - chr1_1:58439915-58439934 Msa0031660:intron 40.0%
!!! ACCATTTTGATTGGCCTGAA+GGG + chr1_1:58440000-58440019 None:intergenic 40.0%
!!! TACCATTTTGATTGGCCTGA+AGG + chr1_1:58440001-58440020 None:intergenic 40.0%
ATTGGGCAATTCGCTTGAAA+TGG - chr1_1:58440639-58440658 Msa0031660:intron 40.0%
GCAATTCGCTTGAAATGGAA+TGG - chr1_1:58440644-58440663 Msa0031660:intron 40.0%
GAGTATCATGTAGTCCAATC+AGG + chr1_1:58440698-58440717 None:intergenic 40.0%
ATTAGACGCAACGAACTTGT+GGG + chr1_1:58440884-58440903 None:intergenic 40.0%
TAATGCAGTGTGTCTGTTGT+TGG - chr1_1:58440953-58440972 Msa0031660:intron 40.0%
AATGCAGTGTGTCTGTTGTT+GGG - chr1_1:58440954-58440973 Msa0031660:intron 40.0%
GGATCGTGATCAAATGTTCA+AGG - chr1_1:58440978-58440997 Msa0031660:intron 40.0%
CTAATTTCCAGAGCAAGCAT+TGG + chr1_1:58441202-58441221 None:intergenic 40.0%
!! CAATGCTTGCTCTGGAAATT+AGG - chr1_1:58441200-58441219 Msa0031660:intron 40.0%
AGGGAGGTTATGAAAGACTA+AGG - chr1_1:58441410-58441429 Msa0031660:intron 40.0%
GTTACATATCTCTCACAAGG+AGG + chr1_1:58441480-58441499 None:intergenic 40.0%
!! ATGGGAAATTTTTGGACTGC+AGG - chr1_1:58441512-58441531 Msa0031660:intron 40.0%
AGGTATGTGAGTAGTGACTT+TGG - chr1_1:58441532-58441551 Msa0031660:intron 40.0%
ATCCCATGAGATGTGACAAT+GGG + chr1_1:58441564-58441583 None:intergenic 40.0%
! CATCTCATGGGATCTGTTTT+CGG - chr1_1:58441571-58441590 Msa0031660:intron 40.0%
TATGCCTTGAGTCCAAATGA+TGG - chr1_1:58441713-58441732 Msa0031660:intron 40.0%
AGTACCATCATTTGGACTCA+AGG + chr1_1:58441720-58441739 None:intergenic 40.0%
! GTCCAAATGATGGTACTGAA+TGG - chr1_1:58441723-58441742 Msa0031660:intron 40.0%
CTCCATTCAGTACCATCATT+TGG + chr1_1:58441728-58441747 None:intergenic 40.0%
TGCTATCGTATCTGATGTCA+TGG + chr1_1:58441795-58441814 None:intergenic 40.0%
TCCATTTCACATACCCTTCA+CGG + chr1_1:58442043-58442062 None:intergenic 40.0%
TGTGGTTTGAGTGTTTACTC+TGG - chr1_1:58442338-58442357 Msa0031660:intron 40.0%
! GGATAAGGAAGGTATAGAAG+AGG - chr1_1:58442386-58442405 Msa0031660:intron 40.0%
!!! GGTGCAATTGTCCTTTTTTC+AGG - chr1_1:58442755-58442774 Msa0031660:intron 40.0%
TATGAAACTTGAACTGGTGC+AGG + chr1_1:58442810-58442829 None:intergenic 40.0%
AGATTACTTGGTCACTGATG+AGG - chr1_1:58442866-58442885 Msa0031660:intron 40.0%
CGTTTACAAAGTAGCAATGC+GGG + chr1_1:58443031-58443050 None:intergenic 40.0%
GAGACCATAATCTGATCGTT+TGG + chr1_1:58443204-58443223 None:intergenic 40.0%
!! GCGTGTGTTTTTGCAATGTT+TGG - chr1_1:58443545-58443564 Msa0031660:CDS 40.0%
CTTCACAGATGTTGCAATGA+AGG - chr1_1:58443735-58443754 Msa0031660:CDS 40.0%
TGAAGGGTGAACACATTAGA+CGG - chr1_1:58443752-58443771 Msa0031660:CDS 40.0%
GTCAAGAAATAAGTCTGCCA+AGG + chr1_1:58443782-58443801 None:intergenic 40.0%
GTGGTATGTGCATTGCATAA+AGG + chr1_1:58443914-58443933 None:intergenic 40.0%
TTATGCAATGCACATACCAC+AGG - chr1_1:58443914-58443933 Msa0031660:CDS 40.0%
GGAACAGATATATTATGGGC+AGG - chr1_1:58443935-58443954 Msa0031660:CDS 40.0%
TACTCTGCCTCTTGAGAAAA+TGG - chr1_1:58443970-58443989 Msa0031660:CDS 40.0%
!! CTAGTAGCCATTTTCTCAAG+AGG + chr1_1:58443980-58443999 None:intergenic 40.0%
CTCTTGAGAAAATGGCTACT+AGG - chr1_1:58443978-58443997 Msa0031660:CDS 40.0%
CAGTTAGAGCTTGAAGCTTT+GGG + chr1_1:58444257-58444276 None:intergenic 40.0%
TCAGTTAGAGCTTGAAGCTT+TGG + chr1_1:58444258-58444277 None:intergenic 40.0%
TCTCTTTGACACAAACCGAT+GGG - chr1_1:58444308-58444327 Msa0031660:intron 40.0%
TCAGTGACCTTAAAATGCTG+TGG + chr1_1:58444481-58444500 None:intergenic 40.0%
AGGAATACCGTATTAGAGAC+GGG - chr1_1:58444536-58444555 Msa0031660:five_prime_UTR 40.0%
CTACATTCCCGTCTCTAATA+CGG + chr1_1:58444546-58444565 None:intergenic 40.0%
GCGTATTTGGTTACAGTTGT+TGG - chr1_1:58444670-58444689 Msa0031660:five_prime_UTR 40.0%
!! TCTTGGTTCGGAAGAGATCT+GGG + chr1_1:58433519-58433538 None:intergenic 45.0%
!! ATCTTGGTTCGGAAGAGATC+TGG + chr1_1:58433520-58433539 None:intergenic 45.0%
GGGAGATGAGAATCTTGGTT+CGG + chr1_1:58433531-58433550 None:intergenic 45.0%
AAGAAAACGCGAACTCGAGA+AGG + chr1_1:58433569-58433588 None:intergenic 45.0%
ATGATTCCGGTGAACAGAGA+CGG + chr1_1:58433792-58433811 None:intergenic 45.0%
CACGCTCATGATTCTAGTGA+AGG - chr1_1:58433966-58433985 Msa0031660:intron 45.0%
TCACACGCGCCAATTATACT+TGG - chr1_1:58434053-58434072 Msa0031660:CDS 45.0%
CCACACTTTGCTGAGTGTTA+CGG - chr1_1:58434553-58434572 Msa0031660:CDS 45.0%
ATGGCAAATGCATGGAAGGT+AGG - chr1_1:58434580-58434599 Msa0031660:CDS 45.0%
ACTGTTGCTGTCGGTAGTAA+TGG - chr1_1:58434990-58435009 Msa0031660:intron 45.0%
TTGCTGTCGGTAGTAATGGT+AGG - chr1_1:58434994-58435013 Msa0031660:intron 45.0%
! GTCCCAATTTTGCTGATGCA+TGG - chr1_1:58435279-58435298 Msa0031660:CDS 45.0%
TACGCATGTATGCACTAGCT+AGG + chr1_1:58435310-58435329 None:intergenic 45.0%
GCTAGTGCATACATGCGTAA+AGG - chr1_1:58435311-58435330 Msa0031660:intron 45.0%
ACTGTGCAGCATAGAGAAAC+TGG + chr1_1:58435820-58435839 None:intergenic 45.0%
! ATGCTGCACAGTTTGAGATG+AGG - chr1_1:58435828-58435847 Msa0031660:intron 45.0%
! AGTTTGAGATGAGGCTCTAC+TGG - chr1_1:58435837-58435856 Msa0031660:intron 45.0%
TACTGGATTCCCAGTATGAG+CGG - chr1_1:58435854-58435873 Msa0031660:intron 45.0%
CAATGCAGTTCACCAAGATC+GGG + chr1_1:58435952-58435971 None:intergenic 45.0%
AGCAGAGAGATGTCTCAAAC+TGG + chr1_1:58436007-58436026 None:intergenic 45.0%
! AGTTTGAGACATCTCTCTGC+TGG - chr1_1:58436006-58436025 Msa0031660:intron 45.0%
! GTTTGAGACATCTCTCTGCT+GGG - chr1_1:58436007-58436026 Msa0031660:intron 45.0%
!! AAGTATTGAAGGAACCCTCC+AGG + chr1_1:58436124-58436143 None:intergenic 45.0%
CAAAGCATGGACTCAGATGA+TGG - chr1_1:58436260-58436279 Msa0031660:intron 45.0%
GACCATGCAATAGCAAAGGT+AGG + chr1_1:58436385-58436404 None:intergenic 45.0%
GCAGACCTTGTAATACTGCA+GGG + chr1_1:58436452-58436471 None:intergenic 45.0%
AAGTATGCATCAGGGAAGGA+AGG + chr1_1:58436829-58436848 None:intergenic 45.0%
GTTCAAGTATGCATCAGGGA+AGG + chr1_1:58436833-58436852 None:intergenic 45.0%
CCAAGGTTCAAGTATGCATC+AGG + chr1_1:58436838-58436857 None:intergenic 45.0%
CCTGATGCATACTTGAACCT+TGG - chr1_1:58436835-58436854 Msa0031660:intron 45.0%
!! GGCATTGATGGATCCTTGAA+AGG - chr1_1:58436919-58436938 Msa0031660:CDS 45.0%
ATCCCTAAAGCCTGATGAAG+GGG + chr1_1:58436959-58436978 None:intergenic 45.0%
CATCCCTAAAGCCTGATGAA+GGG + chr1_1:58436960-58436979 None:intergenic 45.0%
CCATAAGCCATGCCATAGTT+TGG + chr1_1:58437028-58437047 None:intergenic 45.0%
CCAAACTATGGCATGGCTTA+TGG - chr1_1:58437025-58437044 Msa0031660:intron 45.0%
! TGCATGTGACCCCAGATTTT+TGG - chr1_1:58437903-58437922 Msa0031660:intron 45.0%
TCTGAAAGATGTTGGCAGAG+TGG - chr1_1:58438260-58438279 Msa0031660:intron 45.0%
! CAAGATTGGTCAACGCTTGT+GGG + chr1_1:58438434-58438453 None:intergenic 45.0%
ATACGGTGCAGATAATCCAG+TGG + chr1_1:58438611-58438630 None:intergenic 45.0%
!! GCTGATGGTCTTGTAAACAG+AGG - chr1_1:58438896-58438915 Msa0031660:CDS 45.0%
TAGAGTCAGTGATGCTATCC+AGG - chr1_1:58438940-58438959 Msa0031660:intron 45.0%
GGCTGAAGCTCATGCTAATT+TGG - chr1_1:58438997-58439016 Msa0031660:intron 45.0%
TGGCTTCTGCCTATAAGGAT+AGG - chr1_1:58439017-58439036 Msa0031660:intron 45.0%
TTTCAGTGGACATGTAGAGG+CGG - chr1_1:58439352-58439371 Msa0031660:CDS 45.0%
GACCGTGAAAAAGGTTGAAG+CGG + chr1_1:58439805-58439824 None:intergenic 45.0%
CTGCAGTGCTTCATGTTTGA+AGG - chr1_1:58439938-58439957 Msa0031660:intron 45.0%
AAGACTTATTTGGGCCCTTC+AGG - chr1_1:58439983-58440002 Msa0031660:intron 45.0%
GTAGTGAATGCAGAATTGCG+CGG + chr1_1:58440534-58440553 None:intergenic 45.0%
TGCTGTCTGTTTGACCTGAT+TGG - chr1_1:58440681-58440700 Msa0031660:intron 45.0%
CAACGAACTTGTGGGGATAA+TGG + chr1_1:58440876-58440895 None:intergenic 45.0%
TTAGACGCAACGAACTTGTG+GGG + chr1_1:58440883-58440902 None:intergenic 45.0%
CATTAGACGCAACGAACTTG+TGG + chr1_1:58440885-58440904 None:intergenic 45.0%
GGATATGCTATGGCATGGAA+AGG + chr1_1:58441172-58441191 None:intergenic 45.0%
CAAGTGGATATGCTATGGCA+TGG + chr1_1:58441177-58441196 None:intergenic 45.0%
TGGGTCAAGTGGATATGCTA+TGG + chr1_1:58441182-58441201 None:intergenic 45.0%
AGCAGTGTGCAGCATATTTG+CGG + chr1_1:58441324-58441343 None:intergenic 45.0%
ATAGGAGCAGGATGGCTAAA+TGG + chr1_1:58441376-58441395 None:intergenic 45.0%
TGATTGGAATAGGAGCAGGA+TGG + chr1_1:58441384-58441403 None:intergenic 45.0%
TGCTTGATTGGAATAGGAGC+AGG + chr1_1:58441388-58441407 None:intergenic 45.0%
TGCTCCTATTCCAATCAAGC+AGG - chr1_1:58441387-58441406 Msa0031660:intron 45.0%
TCCTATTCCAATCAAGCAGG+AGG - chr1_1:58441390-58441409 Msa0031660:intron 45.0%
CCTATTCCAATCAAGCAGGA+GGG - chr1_1:58441391-58441410 Msa0031660:intron 45.0%
CACCCATTGTCACATCTCAT+GGG - chr1_1:58441559-58441578 Msa0031660:intron 45.0%
GATCCCATGAGATGTGACAA+TGG + chr1_1:58441565-58441584 None:intergenic 45.0%
GCACAACAGAAAGAATGTGG+AGG - chr1_1:58441597-58441616 Msa0031660:intron 45.0%
! ATCTGAAGCAGAGCACTTTG+TGG - chr1_1:58441760-58441779 Msa0031660:intron 45.0%
! TCCGTGAAGGGTATGTGAAA+TGG - chr1_1:58442039-58442058 Msa0031660:intron 45.0%
! GTGAAGGGTATGTGAAATGG+AGG - chr1_1:58442042-58442061 Msa0031660:intron 45.0%
GTGGTCACACAAAACAAGAC+AGG - chr1_1:58442237-58442256 Msa0031660:intron 45.0%
!! TGGTATGGCTTTGTCTCATG+TGG - chr1_1:58442320-58442339 Msa0031660:intron 45.0%
TCATAGAAGCAGCACCAGTA+AGG - chr1_1:58442365-58442384 Msa0031660:intron 45.0%
AAGCAGCACCAGTAAGGATA+AGG - chr1_1:58442371-58442390 Msa0031660:intron 45.0%
AGCACCAGTAAGGATAAGGA+AGG - chr1_1:58442375-58442394 Msa0031660:intron 45.0%
TGGACGCCCTCTTAACTAAT+GGG + chr1_1:58442420-58442439 None:intergenic 45.0%
TTGGACGCCCTCTTAACTAA+TGG + chr1_1:58442421-58442440 None:intergenic 45.0%
! GTGCTCTTTTGGATACACGT+AGG - chr1_1:58442466-58442485 Msa0031660:intron 45.0%
GCTTATAAATTCACCAGGCC+AGG + chr1_1:58442661-58442680 None:intergenic 45.0%
ACTGATGAGGTTAGCAGTAC+TGG - chr1_1:58442879-58442898 Msa0031660:intron 45.0%
CTGATGAGGTTAGCAGTACT+GGG - chr1_1:58442880-58442899 Msa0031660:intron 45.0%
CAGCCCAAACGATCAGATTA+TGG - chr1_1:58443197-58443216 Msa0031660:intron 45.0%
ATCAGATTATGGTCTCCCTG+AGG - chr1_1:58443208-58443227 Msa0031660:intron 45.0%
CTCTTGAAATTTCCTGCAGC+AGG - chr1_1:58443446-58443465 Msa0031660:intron 45.0%
!!! ATCTCCCAGTGGTTTTGACA+TGG + chr1_1:58443606-58443625 None:intergenic 45.0%
TTTCAGATGCTGCTGCACAA+GGG - chr1_1:58443692-58443711 Msa0031660:intron 45.0%
ACACATTAGACGGAGTTCCT+TGG - chr1_1:58443762-58443781 Msa0031660:CDS 45.0%
TCAAGAGGCAGAGTAACCAT+AGG + chr1_1:58443965-58443984 None:intergenic 45.0%
AAAATGGCTACTAGGGTTGC+TGG - chr1_1:58443986-58444005 Msa0031660:CDS 45.0%
ACTCTGTATTTCCACTGGAC+TGG - chr1_1:58444012-58444031 Msa0031660:CDS 45.0%
CTCTGTATTTCCACTGGACT+GGG - chr1_1:58444013-58444032 Msa0031660:CDS 45.0%
TCTGTATTTCCACTGGACTG+GGG - chr1_1:58444014-58444033 Msa0031660:CDS 45.0%
GTTTGTGTCAAAGAGAGGAC+AGG + chr1_1:58444304-58444323 None:intergenic 45.0%
!! CATCGGTTTGTGTCAAAGAG+AGG + chr1_1:58444309-58444328 None:intergenic 45.0%
CTCTCTTTGACACAAACCGA+TGG - chr1_1:58444307-58444326 Msa0031660:intron 45.0%
ATGTGGAATCTGCATTGCTC+TGG - chr1_1:58444448-58444467 Msa0031660:CDS 45.0%
ATCTGCATTGCTCTGGTCAA+CGG - chr1_1:58444455-58444474 Msa0031660:CDS 45.0%
! TCAACGGCCACAGCATTTTA+AGG - chr1_1:58444471-58444490 Msa0031660:exon 45.0%
!! TTGCTTTTGGTCTGTGCCTT+CGG - chr1_1:58444758-58444777 Msa0031660:five_prime_UTR 45.0%
CTATTTAACACAGGCTCCGA+AGG + chr1_1:58444777-58444796 None:intergenic 45.0%
!! ATTAATAAAAAAAAAAATAC+TGG + chr1_1:58437731-58437750 None:intergenic 5.0%
!!! TCAATTTTTTTTTTTTTTTT+TGG - chr1_1:58438372-58438391 Msa0031660:intron 5.0%
!! AAAAAATACATTATTAATTA+AGG + chr1_1:58440418-58440437 None:intergenic 5.0%
!! CAAAAATTAATATTATAATA+TGG + chr1_1:58442524-58442543 None:intergenic 5.0%
!!! CATATTATAATATTAATTTT+TGG - chr1_1:58442522-58442541 Msa0031660:intron 5.0%
GAAAGGAATTGGATCGGGAG+AGG + chr1_1:58433718-58433737 None:intergenic 50.0%
ACGGAGAAGGAACGAAGGAT+CGG + chr1_1:58433773-58433792 None:intergenic 50.0%
CTGGACGGAGATCATGATTC+CGG + chr1_1:58433805-58433824 None:intergenic 50.0%
GGAATCATGATCTCCGTCCA+GGG - chr1_1:58433804-58433823 Msa0031660:CDS 50.0%
ATGAGCCAACAAGCTGAGAG+TGG + chr1_1:58433857-58433876 None:intergenic 50.0%
!! CACAAGAAGCATCGATCTCG+AGG + chr1_1:58434023-58434042 None:intergenic 50.0%
CTCGAGATCGATGCTTCTTG+TGG - chr1_1:58434021-58434040 Msa0031660:CDS 50.0%
CCGTAACACTCAGCAAAGTG+TGG + chr1_1:58434556-58434575 None:intergenic 50.0%
ACTGGCTATAGAGCAGGTTG+GGG + chr1_1:58435797-58435816 None:intergenic 50.0%
! GACTGGCTATAGAGCAGGTT+GGG + chr1_1:58435798-58435817 None:intergenic 50.0%
!! AACTGGACTGGCTATAGAGC+AGG + chr1_1:58435803-58435822 None:intergenic 50.0%
GCAGCATAGAGAAACTGGAC+TGG + chr1_1:58435815-58435834 None:intergenic 50.0%
!! GGTAGAGTACCGCTCATACT+GGG + chr1_1:58435866-58435885 None:intergenic 50.0%
!! AGGTAGAGTACCGCTCATAC+TGG + chr1_1:58435867-58435886 None:intergenic 50.0%
TGGGAGACGAGTATGACCAA+TGG + chr1_1:58436062-58436081 None:intergenic 50.0%
! GCATGGACTCAGATGATGGT+TGG - chr1_1:58436264-58436283 Msa0031660:intron 50.0%
GGCATACAGTTGTTACCTCG+AGG - chr1_1:58436345-58436364 Msa0031660:intron 50.0%
GTTGTATACGCAATGCCTCG+AGG + chr1_1:58436363-58436382 None:intergenic 50.0%
CAGAGCCCTGCAGTATTACA+AGG - chr1_1:58436444-58436463 Msa0031660:CDS 50.0%
GGCAGACCTTGTAATACTGC+AGG + chr1_1:58436453-58436472 None:intergenic 50.0%
TTCCCCCTTCATCAGGCTTT+AGG - chr1_1:58436953-58436972 Msa0031660:CDS 50.0%
TCCCCCTTCATCAGGCTTTA+GGG - chr1_1:58436954-58436973 Msa0031660:CDS 50.0%
TCCCTAAAGCCTGATGAAGG+GGG + chr1_1:58436958-58436977 None:intergenic 50.0%
GCATCCCTAAAGCCTGATGA+AGG + chr1_1:58436961-58436980 None:intergenic 50.0%
CTTCAGACACGGCCAAACTA+TGG - chr1_1:58437013-58437032 Msa0031660:intron 50.0%
TGCAGCAAAGCATGGTCAAC+TGG + chr1_1:58437624-58437643 None:intergenic 50.0%
TGAGCAAGGTCAACTGGACA+TGG - chr1_1:58437855-58437874 Msa0031660:intron 50.0%
GAAAGATGTTGGCAGAGTGG+AGG - chr1_1:58438263-58438282 Msa0031660:intron 50.0%
GGTGGTTAGGCTGTAACGAA+AGG + chr1_1:58438413-58438432 None:intergenic 50.0%
! CCAAGATTGGTCAACGCTTG+TGG + chr1_1:58438435-58438454 None:intergenic 50.0%
!! CCACAAGCGTTGACCAATCT+TGG - chr1_1:58438432-58438451 Msa0031660:intron 50.0%
ATTGATCCCTTGGCAGCTGA+TGG - chr1_1:58438881-58438900 Msa0031660:CDS 50.0%
ACAAGACCATCAGCTGCCAA+GGG + chr1_1:58438890-58438909 None:intergenic 50.0%
TACAAGACCATCAGCTGCCA+AGG + chr1_1:58438891-58438910 None:intergenic 50.0%
ACATACGTGCGATTACCGTC+AGG - chr1_1:58438966-58438985 Msa0031660:intron 50.0%
GATTACCGTCAGGCCTACTA+TGG - chr1_1:58438976-58438995 Msa0031660:intron 50.0%
TTCAGCCATAGTAGGCCTGA+CGG + chr1_1:58438984-58439003 None:intergenic 50.0%
GCATGAGCTTCAGCCATAGT+AGG + chr1_1:58438992-58439011 None:intergenic 50.0%
ACAGATGTTGCAAGGGCGAT+GGG + chr1_1:58439260-58439279 None:intergenic 50.0%
AACAGATGTTGCAAGGGCGA+TGG + chr1_1:58439261-58439280 None:intergenic 50.0%
ATCGCCCTTGCAACATCTGT+TGG - chr1_1:58439260-58439279 Msa0031660:CDS 50.0%
GGCTGTAAAGAGCTACAGAC+AGG - chr1_1:58439373-58439392 Msa0031660:CDS 50.0%
!!! GTAGCCGCTTTTGACAACAG+AGG + chr1_1:58439644-58439663 None:intergenic 50.0%
!! GGCCGCTTCAACCTTTTTCA+CGG - chr1_1:58439800-58439819 Msa0031660:intron 50.0%
GCCCTTCAGGCCAATCAAAA+TGG - chr1_1:58439996-58440015 Msa0031660:CDS 50.0%
CAGGCGCTATTTAAGTGACG+TGG + chr1_1:58440452-58440471 None:intergenic 50.0%
! ACCCAAAATTTGGAGCGGAG+CGG + chr1_1:58440490-58440509 None:intergenic 50.0%
!! CTCCGCTCCAAATTTTGGGT+TGG - chr1_1:58440490-58440509 Msa0031660:intron 50.0%
GGCCAACCCAAAATTTGGAG+CGG + chr1_1:58440495-58440514 None:intergenic 50.0%
GGTCAAACAGACAGCAAGCA+AGG + chr1_1:58440677-58440696 None:intergenic 50.0%
ATGCTATGGCATGGAAAGGC+TGG + chr1_1:58441168-58441187 None:intergenic 50.0%
!! AGAGCAAGCATTGGGTCAAG+TGG + chr1_1:58441193-58441212 None:intergenic 50.0%
ACTTGACCCAATGCTTGCTC+TGG - chr1_1:58441192-58441211 Msa0031660:intron 50.0%
TTGCGGCTGTGAAGAGACAA+AGG + chr1_1:58441307-58441326 None:intergenic 50.0%
CCCTCCTGCTTGATTGGAAT+AGG + chr1_1:58441394-58441413 None:intergenic 50.0%
ATTCCAATCAAGCAGGAGGG+AGG - chr1_1:58441394-58441413 Msa0031660:intron 50.0%
TAACCTCCCTCCTGCTTGAT+TGG + chr1_1:58441400-58441419 None:intergenic 50.0%
CCATGAGATGTGACAATGGG+TGG + chr1_1:58441561-58441580 None:intergenic 50.0%
CCACCCATTGTCACATCTCA+TGG - chr1_1:58441558-58441577 Msa0031660:intron 50.0%
ATGGAACCAGACCAAGATCC+TGG - chr1_1:58442640-58442659 Msa0031660:intron 50.0%
AATTCACCAGGCCAGGATCT+TGG + chr1_1:58442654-58442673 None:intergenic 50.0%
ATGGGATTTCCTGGCACAAC+CGG - chr1_1:58442831-58442850 Msa0031660:intron 50.0%
! TAGCAGTACTGGGTGTTACC+AGG - chr1_1:58442890-58442909 Msa0031660:intron 50.0%
CAAAGTAGCAATGCGGGAGA+TGG + chr1_1:58443025-58443044 None:intergenic 50.0%
GATCGTTTGGGCTGACAGTT+TGG + chr1_1:58443191-58443210 None:intergenic 50.0%
AGTCTCATTTCTCCTGCTGC+AGG + chr1_1:58443461-58443480 None:intergenic 50.0%
CTTTCAGATGCTGCTGCACA+AGG - chr1_1:58443691-58443710 Msa0031660:intron 50.0%
TTCAGATGCTGCTGCACAAG+GGG - chr1_1:58443693-58443712 Msa0031660:intron 50.0%
ATTATGGGCAGGTCTGCCTA+TGG - chr1_1:58443946-58443965 Msa0031660:CDS 50.0%
GGCTCACTCTGTATTTCCAC+TGG - chr1_1:58444007-58444026 Msa0031660:CDS 50.0%
! CTGTATTTCCACTGGACTGG+GGG - chr1_1:58444015-58444034 Msa0031660:CDS 50.0%
TAGTTAACCCCGCATGTCTG+AGG - chr1_1:58444589-58444608 Msa0031660:five_prime_UTR 50.0%
AGTTAACCCCGCATGTCTGA+GGG - chr1_1:58444590-58444609 Msa0031660:five_prime_UTR 50.0%
TTTGGCAACCCTCAGACATG+CGG + chr1_1:58444601-58444620 None:intergenic 50.0%
CAGAGACGGAGAAGGAACGA+AGG + chr1_1:58433778-58433797 None:intergenic 55.0%
CCTTCTCCGTCTCTGTTCAC+CGG - chr1_1:58433783-58433802 Msa0031660:CDS 55.0%
CGGAATCATGATCTCCGTCC+AGG - chr1_1:58433803-58433822 Msa0031660:CDS 55.0%
AGCCACCACTCTCAGCTTGT+TGG - chr1_1:58433849-58433868 Msa0031660:CDS 55.0%
AGCCAACAAGCTGAGAGTGG+TGG + chr1_1:58433854-58433873 None:intergenic 55.0%
GAACGGCAATCGAGAGCTGT+CGG + chr1_1:58433880-58433899 None:intergenic 55.0%
AGCTCTCGATTGCCGTTCAC+CGG - chr1_1:58433882-58433901 Msa0031660:intron 55.0%
TCAACGCGATCTCCGGTGAA+CGG + chr1_1:58433897-58433916 None:intergenic 55.0%
GAACGGTTCAACGCGATCTC+CGG + chr1_1:58433904-58433923 None:intergenic 55.0%
GGCTCTTGCTTAACGGCGAA+CGG + chr1_1:58433921-58433940 None:intergenic 55.0%
CGACGACGGCTCTTGCTTAA+CGG + chr1_1:58433928-58433947 None:intergenic 55.0%
GGCAATAACGTGAGCGACGA+CGG + chr1_1:58433942-58433961 None:intergenic 55.0%
GCAGCAGCAGAACCAACAGA+GGG + chr1_1:58435253-58435272 None:intergenic 55.0%
TGCAGCAGCAGAACCAACAG+AGG + chr1_1:58435254-58435273 None:intergenic 55.0%
!! GGACTGGCTATAGAGCAGGT+TGG + chr1_1:58435799-58435818 None:intergenic 55.0%
! AAAATGGCCATGTGCTGGCC+TGG - chr1_1:58436095-58436114 Msa0031660:intron 55.0%
! GCTGGTCTGTTCATGGAGTC+TGG - chr1_1:58436412-58436431 Msa0031660:intron 55.0%
GACACGGCCAAACTATGGCA+TGG - chr1_1:58437018-58437037 Msa0031660:intron 55.0%
GATCGATGACCTTGGTCTCC+AGG - chr1_1:58437205-58437224 Msa0031660:intron 55.0%
GTCAACGCTTGTGGGTGGTT+AGG + chr1_1:58438426-58438445 None:intergenic 55.0%
! GATTGGTCAACGCTTGTGGG+TGG + chr1_1:58438431-58438450 None:intergenic 55.0%
CAGCTGCCAAGGGATCAATG+CGG + chr1_1:58438880-58438899 None:intergenic 55.0%
AGATGTTGCAAGGGCGATGG+GGG + chr1_1:58439258-58439277 None:intergenic 55.0%
CAGATGTTGCAAGGGCGATG+GGG + chr1_1:58439259-58439278 None:intergenic 55.0%
GTTGTCAAAAGCGGCTACGC+CGG - chr1_1:58439646-58439665 Msa0031660:CDS 55.0%
AATTTCAACGCCACCGAGCC+AGG - chr1_1:58439693-58439712 Msa0031660:CDS 55.0%
GAAGTGGAGAGCGGTCAAAG+CGG - chr1_1:58439734-58439753 Msa0031660:intron 55.0%
AAGTGGAGAGCGGTCAAAGC+GGG - chr1_1:58439735-58439754 Msa0031660:intron 55.0%
CCACTATGCAGTGACCGGTT+CGG - chr1_1:58439758-58439777 Msa0031660:intron 55.0%
! TCCCGCTCCGCTCCAAATTT+TGG - chr1_1:58440485-58440504 Msa0031660:intron 55.0%
! CCCAAAATTTGGAGCGGAGC+GGG + chr1_1:58440489-58440508 None:intergenic 55.0%
! CCCGCTCCGCTCCAAATTTT+GGG - chr1_1:58440486-58440505 Msa0031660:intron 55.0%
TGCGCGGCCAACCCAAAATT+TGG + chr1_1:58440500-58440519 None:intergenic 55.0%
!! TTTGGGTTGGCCGCGCAATT+TGG - chr1_1:58440503-58440522 Msa0031660:intron 55.0%
!! TTGGGTTGGCCGCGCAATTT+GGG - chr1_1:58440504-58440523 Msa0031660:intron 55.0%
GCAGTGTGTCTGTTGTTGGG+AGG - chr1_1:58440957-58440976 Msa0031660:intron 55.0%
GCATGGAAAGGCTGGACACT+AGG + chr1_1:58441160-58441179 None:intergenic 55.0%
GGAGCAGGATGGCTAAATGG+TGG + chr1_1:58441373-58441392 None:intergenic 55.0%
TATGTAGCTCCGGTTGTGCC+AGG + chr1_1:58442843-58442862 None:intergenic 55.0%
GCGCTCAATGTCTTTGCCCT+GGG - chr1_1:58443128-58443147 Msa0031660:intron 55.0%
AAGAGCCAAAGCGCGCTGTT+GGG + chr1_1:58443431-58443450 None:intergenic 55.0%
GGGACGAGATGATTGTCAGC+AGG - chr1_1:58444035-58444054 Msa0031660:intron 55.0%
TTGGCAACCCTCAGACATGC+GGG + chr1_1:58444600-58444619 None:intergenic 55.0%
GAGATCTGGGCCGTCGATGT+AGG + chr1_1:58433506-58433525 None:intergenic 60.0%
CCGGTGAACAGAGACGGAGA+AGG + chr1_1:58433786-58433805 None:intergenic 60.0%
GCGATGGTGATCTCCCTGGA+CGG + chr1_1:58433820-58433839 None:intergenic 60.0%
GAGAGTGGTGGCTGTAGTGG+TGG + chr1_1:58433842-58433861 None:intergenic 60.0%
GCTGAGAGTGGTGGCTGTAG+TGG + chr1_1:58433845-58433864 None:intergenic 60.0%
AAGGAACCCTCCAGGCTTCC+AGG + chr1_1:58436116-58436135 None:intergenic 60.0%
! GGTCCTCCGCATTGATCCCT+TGG - chr1_1:58438871-58438890 Msa0031660:CDS 60.0%
CTGCCAAGGGATCAATGCGG+AGG + chr1_1:58438877-58438896 None:intergenic 60.0%
CCGAACCGGTCACTGCATAG+TGG + chr1_1:58439761-58439780 None:intergenic 60.0%
!! TGACCGGTTCGGAGCAGGAT+GGG - chr1_1:58439769-58439788 Msa0031660:intron 60.0%
GGAGCAGGATGGGGTCAATG+CGG - chr1_1:58439779-58439798 Msa0031660:intron 60.0%
! AATTTGGAGCGGAGCGGGAG+CGG + chr1_1:58440484-58440503 None:intergenic 60.0%
GTTGGCCGCGCAATTTGGGT+TGG - chr1_1:58440508-58440527 Msa0031660:intron 60.0%
ACCAGACCAAGATCCTGGCC+TGG - chr1_1:58442645-58442664 Msa0031660:intron 60.0%
ACCAGGCCAGGATCTTGGTC+TGG + chr1_1:58442649-58442668 None:intergenic 60.0%
GGCGCTCAATGTCTTTGCCC+TGG - chr1_1:58443127-58443146 Msa0031660:intron 60.0%
GTGTACCCAACAGCGCGCTT+TGG - chr1_1:58443423-58443442 Msa0031660:intron 60.0%
CAAGAGCCAAAGCGCGCTGT+TGG + chr1_1:58443432-58443451 None:intergenic 60.0%
TGGCAACCCTCAGACATGCG+GGG + chr1_1:58444599-58444618 None:intergenic 60.0%
GGTGGCGATGGTGATCTCCC+TGG + chr1_1:58433824-58433843 None:intergenic 65.0%
! GGTGGCTGTAGTGGTGGCGA+TGG + chr1_1:58433836-58433855 None:intergenic 65.0%
CAGGCTTCCAGGCCAGCACA+TGG + chr1_1:58436105-58436124 None:intergenic 65.0%
! CATGTGCTGGCCTGGAAGCC+TGG - chr1_1:58436103-58436122 Msa0031660:intron 65.0%
! TGCTGGCCTGGAAGCCTGGA+GGG - chr1_1:58436107-58436126 Msa0031660:intron 65.0%
CTTCGCGCTGCTATAGCGGC+CGG + chr1_1:58439668-58439687 None:intergenic 65.0%
GCCGCTATAGCAGCGCGAAG+CGG - chr1_1:58439668-58439687 Msa0031660:CDS 65.0%
CCCGCTTCGCGCTGCTATAG+CGG + chr1_1:58439672-58439691 None:intergenic 65.0%
CCGCTATAGCAGCGCGAAGC+GGG - chr1_1:58439669-58439688 Msa0031660:CDS 65.0%
TCTCCACTTCCGACACGCCC+CGG + chr1_1:58439724-58439743 None:intergenic 65.0%
GGCGTGTCGGAAGTGGAGAG+CGG - chr1_1:58439725-58439744 Msa0031660:intron 65.0%
GCGGGCCACTATGCAGTGAC+CGG - chr1_1:58439753-58439772 Msa0031660:intron 65.0%
!! TGCAGTGACCGGTTCGGAGC+AGG - chr1_1:58439764-58439783 Msa0031660:intron 65.0%
!! GTGACCGGTTCGGAGCAGGA+TGG - chr1_1:58439768-58439787 Msa0031660:intron 65.0%
!! GACCGGTTCGGAGCAGGATG+GGG - chr1_1:58439770-58439789 Msa0031660:intron 65.0%
GACCCCATCCTGCTCCGAAC+CGG + chr1_1:58439775-58439794 None:intergenic 65.0%
CGCGGCCAACCCAAATTGCG+CGG + chr1_1:58440516-58440535 None:intergenic 65.0%
CATCTCGTCCCCCAGTCCAG+TGG + chr1_1:58444026-58444045 None:intergenic 65.0%
! GTGCTGGCCTGGAAGCCTGG+AGG - chr1_1:58436106-58436125 Msa0031660:intron 70.0%
GCCACCGAGCCAGGCTGCAC+CGG - chr1_1:58439702-58439721 Msa0031660:CDS 75.0%
CCACCGAGCCAGGCTGCACC+GGG - chr1_1:58439703-58439722 Msa0031660:CDS 75.0%
CACCGAGCCAGGCTGCACCG+GGG - chr1_1:58439704-58439723 Msa0031660:CDS 75.0%
CAGGCTGCACCGGGGCGTGT+CGG - chr1_1:58439712-58439731 Msa0031660:CDS 75.0%
GCACCGGGGCGTGTCGGAAG+TGG - chr1_1:58439718-58439737 Msa0031660:CDS 75.0%
!!! CCCGGTGCAGCCTGGCTCGG+TGG + chr1_1:58439706-58439725 None:intergenic 80.0%
! CGCCCCGGTGCAGCCTGGCT+CGG + chr1_1:58439709-58439728 None:intergenic 80.0%
! CGACACGCCCCGGTGCAGCC+TGG + chr1_1:58439714-58439733 None:intergenic 80.0%
! AGCGGAGCGGGAGCGGCGAG+GGG + chr1_1:58440477-58440496 None:intergenic 80.0%
! GAGCGGAGCGGGAGCGGCGA+GGG + chr1_1:58440478-58440497 None:intergenic 80.0%
! GCGGGAGCGGCGAGGGGAGC+AGG + chr1_1:58440471-58440490 None:intergenic 85.0%
! GGAGCGGAGCGGGAGCGGCG+AGG + chr1_1:58440479-58440498 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58433482 58444816 58433482 ID=Msa0031660;Name=Msa0031660
chr1_1 mRNA 58433482 58444816 58433482 ID=Msa0031660-mRNA-1;Parent=Msa0031660;Name=Msa0031660-mRNA-1;_AED=0.19;_eAED=0.19;_QI=328|1|1|1|0.92|0.96|28|285|986
chr1_1 exon 58433482 58433880 58433482 ID=Msa0031660-mRNA-1:exon:17894;Parent=Msa0031660-mRNA-1
chr1_1 exon 58433969 58434089 58433969 ID=Msa0031660-mRNA-1:exon:17893;Parent=Msa0031660-mRNA-1
chr1_1 exon 58434242 58434388 58434242 ID=Msa0031660-mRNA-1:exon:17892;Parent=Msa0031660-mRNA-1
chr1_1 exon 58434495 58434600 58434495 ID=Msa0031660-mRNA-1:exon:17891;Parent=Msa0031660-mRNA-1
chr1_1 exon 58434810 58434892 58434810 ID=Msa0031660-mRNA-1:exon:17890;Parent=Msa0031660-mRNA-1
chr1_1 exon 58435004 58435131 58435004 ID=Msa0031660-mRNA-1:exon:17889;Parent=Msa0031660-mRNA-1
chr1_1 exon 58435237 58435323 58435237 ID=Msa0031660-mRNA-1:exon:17888;Parent=Msa0031660-mRNA-1
chr1_1 exon 58435411 58435521 58435411 ID=Msa0031660-mRNA-1:exon:17887;Parent=Msa0031660-mRNA-1
chr1_1 exon 58436427 58436594 58436427 ID=Msa0031660-mRNA-1:exon:17886;Parent=Msa0031660-mRNA-1
chr1_1 exon 58436680 58436764 58436680 ID=Msa0031660-mRNA-1:exon:17885;Parent=Msa0031660-mRNA-1
chr1_1 exon 58436861 58436977 58436861 ID=Msa0031660-mRNA-1:exon:17884;Parent=Msa0031660-mRNA-1
chr1_1 exon 58437077 58437153 58437077 ID=Msa0031660-mRNA-1:exon:17883;Parent=Msa0031660-mRNA-1
chr1_1 exon 58437266 58437337 58437266 ID=Msa0031660-mRNA-1:exon:17882;Parent=Msa0031660-mRNA-1
chr1_1 exon 58438844 58438940 58438844 ID=Msa0031660-mRNA-1:exon:17881;Parent=Msa0031660-mRNA-1
chr1_1 exon 58439260 58439462 58439260 ID=Msa0031660-mRNA-1:exon:17880;Parent=Msa0031660-mRNA-1
chr1_1 exon 58439638 58439740 58439638 ID=Msa0031660-mRNA-1:exon:17879;Parent=Msa0031660-mRNA-1
chr1_1 exon 58439826 58439893 58439826 ID=Msa0031660-mRNA-1:exon:17878;Parent=Msa0031660-mRNA-1
chr1_1 exon 58439993 58440046 58439993 ID=Msa0031660-mRNA-1:exon:17877;Parent=Msa0031660-mRNA-1
chr1_1 exon 58440356 58440465 58440356 ID=Msa0031660-mRNA-1:exon:17876;Parent=Msa0031660-mRNA-1
chr1_1 exon 58441252 58441330 58441252 ID=Msa0031660-mRNA-1:exon:17875;Parent=Msa0031660-mRNA-1
chr1_1 exon 58441428 58441490 58441428 ID=Msa0031660-mRNA-1:exon:17874;Parent=Msa0031660-mRNA-1
chr1_1 exon 58441833 58441952 58441833 ID=Msa0031660-mRNA-1:exon:17873;Parent=Msa0031660-mRNA-1
chr1_1 exon 58442684 58442740 58442684 ID=Msa0031660-mRNA-1:exon:17872;Parent=Msa0031660-mRNA-1
chr1_1 exon 58442907 58443023 58442907 ID=Msa0031660-mRNA-1:exon:17871;Parent=Msa0031660-mRNA-1
chr1_1 exon 58443536 58443586 58443536 ID=Msa0031660-mRNA-1:exon:17870;Parent=Msa0031660-mRNA-1
chr1_1 exon 58443701 58443799 58443701 ID=Msa0031660-mRNA-1:exon:17869;Parent=Msa0031660-mRNA-1
chr1_1 exon 58443907 58444052 58443907 ID=Msa0031660-mRNA-1:exon:17868;Parent=Msa0031660-mRNA-1
chr1_1 exon 58444311 58444816 58444311 ID=Msa0031660-mRNA-1:exon:17867;Parent=Msa0031660-mRNA-1
chr1_1 five_prime_UTR 58444489 58444816 58444489 ID=Msa0031660-mRNA-1:five_prime_utr;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58444311 58444488 58444311 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58443907 58444052 58443907 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58443701 58443799 58443701 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58443536 58443586 58443536 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58442907 58443023 58442907 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58442684 58442740 58442684 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58441833 58441952 58441833 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58441428 58441490 58441428 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58441252 58441330 58441252 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58440356 58440465 58440356 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58439993 58440046 58439993 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58439826 58439893 58439826 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58439638 58439740 58439638 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58439260 58439462 58439260 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58438844 58438940 58438844 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58437266 58437337 58437266 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58437077 58437153 58437077 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58436861 58436977 58436861 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58436680 58436764 58436680 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58436427 58436594 58436427 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58435411 58435521 58435411 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58435237 58435323 58435237 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58435004 58435131 58435004 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58434810 58434892 58434810 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58434495 58434600 58434495 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58434242 58434388 58434242 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58433969 58434089 58433969 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 CDS 58433767 58433880 58433767 ID=Msa0031660-mRNA-1:cds;Parent=Msa0031660-mRNA-1
chr1_1 three_prime_UTR 58433482 58433766 58433482 ID=Msa0031660-mRNA-1:three_prime_utr;Parent=Msa0031660-mRNA-1
Gene Sequence

>Msa0031660

ATGATCTCCGTCCAGGGAGATCACCATCGCCACCACTACAGCCACCACTCTCAGCTTGTTGGCTCATCCGACAGCTCTCGATTGCCGTTCACCGGAGATCGCGTTGAACCGTTCGCCGTTAAGCAAGAGCCGTCGTCGCTCACGTTATTGCCTTTACACGCTCATGATTCTAGTGAAGTTGATGAAGATTTGCATTTGACTCTTGCACATCAAATGTACAAGAGTGGAAGTTATAAGAAAGCGTTAGAGCATAGCAACACTGTCTATGAGAGAAATCCGCTTCGCACCGATAATTTACTACTCCTTGGTGCAATTTATTACCAGTTGCATGATTTTGATATGTGCGTGGCGAAAAATGAAGAAGCACTTAGGATTGAGCCACACTTTGCTGAGTGTTACGGTAATATGGCAAATGCATGGAAGGAAAAAGGCAACATTGACCTTGCAATTCGCTATTACTTGATTGCCATTGAGCTTCGTCCCAATTTTGCTGATGCATGGTCAAACCTAGCTAGTGCATACATGCGTAAAGGAAGACTTACTGAAGCAGCTCAATGTTGTCGTCAAGCACTTGCTATCAACCCTCTAATGGTTGATGCTCATAGTAACTTGGGTAATCTAATGAAAGCTCAAGGGTTGGTCCAAGAAGCATACAGTTGTTACCTCGAGGCATTGCGTATACAACCTACCTTTGCTATTGCATGGTCAAATCTTGCTGGTCTGTTCATGGAGTCTGGTGATTTCAACAGAGCCCTGCAGTATTACAAGGAAGCTGTTAAACTCAAACCTTCCTTCCCTGATGCATACTTGAACCTTGGGAATGTATACAAGGCTTTAGGGATGCCTCAAGAAGCTATTGCATGTTATCAACATGCTCTTCAGACACGGCCAAACTATGGCATGGCTTATGGTAATTTGGCCAGTATACATTATGAGCAAGGTCAACTGGACATGGCAATTCTACACTACAAACAAGCTATTGCATGTGACCCCAGATTTTTGGAAGCTTACAATAATTTGGGTAATGCTCTGAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATCAATGCCTTTCGTTACAGCCTAACCACCCACAAGCGTTGACCAATCTTGGAAATATATACATGGAATGGAACATGGTGGCTGCTGCTGCTTCATATTATAAAGCTACACTAAATGTAACCACTGGATTATCTGCACCGTATAACAACCTTGCTATAATATATAAGCAGCAGGGGAATTATGCAGATGCCATATCTTGCTACAATGAGGTCCTCCGCATTGATCCCTTGGCAGCTGATGGTCTTGTAAACAGAGGCAATACTTATAAGGAGATTGGTAGAGTCAGTGATGCTATCCAGGATTACATACGTGCGATTACCGTCAGGCCTACTATGGCTGAAGCTCATGCTAATTTGGCTTCTGCCTATAAGGATAGTGGACATGTAGAGGCGGCTGTAAAGAGCTACAGACAGGCATTGATTCTTCGTACAGACTTTCCTGAAGCAACTTGCAATCTTCTACATACACTTCAGTGTGTCTGTTGTTGGGAGGATCGTGATCAAATGTTCAAGGAAGTAGAAGGGATTATCAGAAGACAAATTAATATGTCAGTTCTTCCTAGTGTCCAGCCTTTCCATGCCATAGCATATCCACTTGACCCAATGCTTGCTCTGGAAATTAGCCGCAAATATGCTGCACACTGCTCTGTAATTGCATCTCGTTTCTCTCTACCACCATTTAGCCATCCTGCTCCTATTCCAATCAAGCAGGAGGGAGGTTATGAAAGACTAAGGATTGGGTATGTGAGTAGTGACTTTGGTAACCACCCATTGTCACATCTCATGGGATCTGTTTTCGGTATGCACAACAGAAAGAATGTGGAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAATGGAGACAGCGTATTCAATCTGAAGCAGAGCACTTTGTGGATGTATCTGCCATGACATCAGATACGATAGCAAAATTGATCAACGAGGATAAGATTCAAATCCTTATCAACCTTAATGGTTATACAAAGGGTGCAAGAAATGAGATATTTGCTATGAAACCTGCACCAGTTCAAGTTTCATATATGGGATTTCCTGGCACAACCGGAGCTACATACATAGATTACTTGGTCACTGATGAGTTTGTTTCACCTCTTCAGTATGCACATATCTACTCTGAAAAGATTGTCCATCTCCCGCATTGCTACTTTGTAAACGATTATAAACAGAAAAATCAGGATGTGTTAGATCCAAACTGTCAGCCCAAACGATCAGATTATGGTCTCCCTGAGGATAAGTTTTTATTTGCATGCTTCAATCAACTTTACAAGATGGATCCTGAAATATTTAATACATGGTGCAATATACTTAAACGTGTACCCAACAGCGCGCTTTGGCTCTTGAAATTTCCTGCAGCAGGAGAAATGAGACTGAGGGCATATGCTGCTGCACAAGGGGTACAACCTGATCAAATTATCTTCACAGATGTTGCAATGAAGGGTGAACACATTAGACGGAGTTCCTTGGCAGACTTATTTCTTGACACGCCTTTATGCAATGCACATACCACAGGAACAGATATATTATGGGCAGGTCTGCCTATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGGGTTGCTGGCTCACTCTGTATTTCCACTGGACTGGGGGACGAGATGATTGTCAGCAGTATGAAAGAGTATGAAGATAGAGCTGTAACGCTTGCTCTGAATCGCCCAAAGCTTCAAGCTCTAACTGACAAGCTCAAATCTGTGCGTCTGACCTGTCCTCTCTTTGACACAAACCGATGGGTGAGAAATCTCGACAGAGCATATTTTAAAATGTGGAATCTGCATTGCTCTGGTCAACGGCCACAGCATTTTAAGGTCACTGAAAATGATAACGAATGTCCAGATGATAAATAG
Protein sequence

>Msa0031660

MISVQGDHHRHHYSHHSQLVGSSDSSRLPFTGDRVEPFAVKQEPSSLTLLPLHAHDSSEVDEDLHLTLAHQMYKSGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSLQPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDSGHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSAMTSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVAMKGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLGDEMIVSSMKEYEDRAVTLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLDRAYFKMWNLHCSGQRPQHFKVTENDNECPDDK*