AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171750 MtrunA17_Chr1g0189851 99.462 744 4 0 243 986 1 744 0.0 1558
Msa0171750 MtrunA17_Chr1g0189851 35.606 264 170 0 111 374 5 268 6.94e-41 162
Msa0171750 MtrunA17_Chr1g0189851 32.168 286 194 0 74 359 2 287 3.48e-38 153
Msa0171750 MtrunA17_Chr1g0189851 32.584 267 180 0 142 408 2 268 8.09e-35 142
Msa0171750 MtrunA17_Chr1g0189851 25.616 203 148 1 39 238 66 268 2.12e-11 68.2
Msa0171750 MtrunA17_Chr1g0189861 98.148 216 4 0 1 216 1 216 1.47e-149 442
Msa0171750 MtrunA17_Chr1g0189861 34.014 147 97 0 238 384 68 214 4.28e-18 84.7
Msa0171750 MtrunA17_Chr1g0189861 34.783 115 75 0 238 352 102 216 2.61e-15 76.6
Msa0171750 MtrunA17_Chr1g0189861 39.583 96 58 0 189 284 121 216 1.78e-14 73.9
Msa0171750 MtrunA17_Chr1g0189861 30.631 111 77 0 306 416 102 212 5.86e-11 63.5
Msa0171750 MtrunA17_Chr1g0189861 37.864 103 64 0 408 510 102 204 6.55e-11 63.5
Msa0171750 MtrunA17_Chr1g0178301 27.607 815 511 14 178 970 96 853 2.76e-83 289
Msa0171750 MtrunA17_Chr1g0178301 30.904 343 189 3 148 442 98 440 3.97e-40 160
Msa0171750 MtrunA17_Chr1g0168581 23.411 299 196 2 140 431 201 473 2.68e-12 71.2
Msa0171750 MtrunA17_Chr5g0401551 22.179 257 200 0 246 502 289 545 5.70e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171750 AT3G04240.1 82.080 971 169 2 21 986 7 977 0.0 1709
Msa0171750 AT3G04240.2 85.215 744 110 0 243 986 1 744 0.0 1378
Msa0171750 AT3G04240.2 32.362 309 200 2 175 474 1 309 3.39e-41 163
Msa0171750 AT3G04240.2 33.103 290 194 0 74 363 2 291 1.09e-40 161
Msa0171750 AT3G11540.1 27.590 830 524 15 177 985 92 865 2.69e-79 278
Msa0171750 AT3G11540.1 31.549 355 183 5 141 442 90 437 4.43e-39 157
Msa0171750 AT3G11540.1 32.830 265 171 1 116 373 172 436 2.02e-34 142
Msa0171750 AT3G11540.1 26.480 321 213 5 239 545 50 361 1.95e-19 94.7
Msa0171750 AT3G11540.1 28.346 254 168 4 78 317 196 449 8.07e-19 92.8
Msa0171750 AT3G11540.1 28.700 223 149 3 295 510 41 260 7.26e-16 83.2
Msa0171750 AT3G11540.2 25.816 705 447 16 295 985 41 683 7.57e-51 192
Msa0171750 AT3G11540.2 31.694 183 113 2 198 373 77 254 1.62e-16 85.1
Msa0171750 AT3G11540.2 31.176 170 103 3 177 339 92 254 1.80e-13 75.1
Msa0171750 AT3G11540.2 26.540 211 143 2 239 442 50 255 1.13e-11 69.3
Msa0171750 AT3G11540.2 31.250 192 103 6 141 317 90 267 4.19e-11 67.4
Msa0171750 AT2G32450.1 28.713 202 136 2 180 373 245 446 1.34e-14 79.0
Msa0171750 AT2G32450.1 27.976 168 121 0 196 363 303 470 7.90e-13 73.2
Msa0171750 AT2G32450.1 24.481 241 174 1 199 431 230 470 1.06e-12 72.8
Msa0171750 AT1G05150.1 24.206 252 165 1 180 431 250 475 3.26e-13 74.3
Msa0171750 AT1G05150.1 25.094 267 172 2 248 512 250 490 1.37e-12 72.4
Msa0171750 AT5G63200.2 21.594 389 231 10 117 434 218 603 2.19e-11 68.2

Find 283 sgRNAs with CRISPR-Local

Find 763 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATTGGGTTGCGTATT+TGG 0.094411 1_4:-56473582 Msa0171750:three_prime_UTR
CAAATCCTTATCAACCTTAA+TGG 0.143162 1_4:-56476656 Msa0171750:CDS
GTAATTTAGTTACTCAAAAT+TGG 0.160570 1_4:-56473595 Msa0171750:three_prime_UTR
GGCTGAAGCTCATGCTAATT+TGG 0.170309 1_4:-56479484 Msa0171750:CDS
AAATGATGTTACAGGTAATT+TGG 0.170385 1_4:-56480660 Msa0171750:intron
TTTGGAAGCTTACAATAATT+TGG 0.173624 1_4:-56480558 Msa0171750:intron
TGACCATGCATCAGCAAAAT+TGG 0.177023 1_4:+56483198 None:intergenic
TACCATGTATTAAATATTTC+AGG 0.201953 1_4:+56474963 None:intergenic
TTTCTTCTTCTCTACGATTT+TGG 0.215641 1_4:+56484856 None:intergenic
CCACAGGAACAGATATATTA+TGG 0.228996 1_4:-56474309 Msa0171750:CDS
CAATGCTTGCTCTGGAAATT+AGG 0.230192 1_4:-56477295 Msa0171750:intron
ACCAGTTCAAGTTTCATATA+TGG 0.238851 1_4:-56475426 Msa0171750:CDS
TTACAACAATGTATATTCTT+TGG 0.248808 1_4:+56473614 None:intergenic
TACTCTGCCTCTTGAGAAAA+TGG 0.256247 1_4:-56474269 Msa0171750:CDS
CTACCTTTGTATAACCATTA+AGG 0.273432 1_4:+56476642 None:intergenic
TAATTTGGCTTCTGCCTATA+AGG 0.274347 1_4:-56479469 Msa0171750:CDS
ATTAGCATACCTATCCTTAT+AGG 0.292089 1_4:+56479455 None:intergenic
CCAAACTATGGCATGGCTTA+TGG 0.303947 1_4:-56481455 Msa0171750:intron
TGCCGAGTGTTACGGTAATA+TGG 0.304813 1_4:-56483924 Msa0171750:CDS
CATGTATATATTTCCAAGAT+TGG 0.315239 1_4:+56480036 None:intergenic
TAACCTCCCTCCTGCTTGAT+TGG 0.315790 1_4:+56477098 None:intergenic
TCAGTTAGAGCTTGAAGCTT+TGG 0.317430 1_4:+56473984 None:intergenic
GTTTCATATATGGGATTTCC+TGG 0.320555 1_4:-56475416 Msa0171750:CDS
CCAGTTCAAGTTTCATATAT+GGG 0.320872 1_4:-56475425 Msa0171750:CDS
GCGTATTTGGTTACAGTTGT+TGG 0.329402 1_4:-56473569 Msa0171750:three_prime_UTR
CTCTGTATTTCCACTGGACT+GGG 0.331322 1_4:-56474226 Msa0171750:CDS
AATAGTAAAATTACCATTAG+AGG 0.332566 1_4:+56483097 None:intergenic
AGAAGATTGCAAGTTGCTTC+AGG 0.349834 1_4:+56479058 None:intergenic
TCCTATGTCTATTTATCATC+TGG 0.352528 1_4:+56473722 None:intergenic
CTCCATTCAGTACCATCATT+TGG 0.353434 1_4:+56476770 None:intergenic
CAGTTAGAGCTTGAAGCTTT+GGG 0.354805 1_4:+56473985 None:intergenic
ATCTTGGTTCGGAAGAGATC+TGG 0.358333 1_4:+56484973 None:intergenic
GATCGTTTGGGCTGACAGTT+TGG 0.362406 1_4:+56475050 None:intergenic
AAACAGAGGCAATACTTATA+AGG 0.364549 1_4:-56479571 Msa0171750:CDS
AAAGGGAACATGAAAGGAAT+TGG 0.364782 1_4:+56484769 None:intergenic
CTTCAGACACGGCCAAACTA+TGG 0.368387 1_4:-56481467 Msa0171750:CDS
CCTGATGCATACTTGAACCT+TGG 0.368615 1_4:-56481644 Msa0171750:CDS
CTCTTGAAATTTCCTGCAGC+AGG 0.374684 1_4:-56474792 Msa0171750:CDS
CAATCTTCTACATACACTTC+AGG 0.378736 1_4:-56479044 Msa0171750:intron
CCACAAGCGTTGACCAATCT+TGG 0.379245 1_4:-56480049 Msa0171750:CDS
CTTTGTAAACGATTATAAAC+AGG 0.383696 1_4:-56475198 Msa0171750:intron
ATTATAGCAAGGTTGTTATA+CGG 0.385320 1_4:+56479856 None:intergenic
TATAACCATTAAGGTTGATA+AGG 0.388324 1_4:+56476651 None:intergenic
ATAGGAGCAGGATGGCTAAA+TGG 0.389099 1_4:+56477122 None:intergenic
ACTTGCTATCAACCCTCTAA+TGG 0.389345 1_4:-56483110 Msa0171750:intron
AAATCTTGCTGGTCTGTTCA+TGG 0.391501 1_4:-56482073 Msa0171750:CDS
TATTAGAAGATGTTTGCTTT+TGG 0.391927 1_4:-56473494 Msa0171750:three_prime_UTR
CAGCCCAAACGATCAGATTA+TGG 0.392917 1_4:-56475041 Msa0171750:CDS
ACTCTGTATTTCCACTGGAC+TGG 0.395288 1_4:-56474227 Msa0171750:CDS
CCATAAGCCATGCCATAGTT+TGG 0.399981 1_4:+56481455 None:intergenic
CCAAGGTTCAAGTATGCATC+AGG 0.403218 1_4:+56481644 None:intergenic
CAAATGTTCAAGGAAGTAGA+AGG 0.411950 1_4:-56477507 Msa0171750:CDS
ACATTATGAGCAAGGTCAAC+TGG 0.412081 1_4:-56480630 Msa0171750:CDS
GCTGGTCTGTTCATGGAGTC+TGG 0.413134 1_4:-56482066 Msa0171750:CDS
CTTCACAGATGTTGCAATGA+AGG 0.419095 1_4:-56474504 Msa0171750:CDS
TAATTTAGTTACTCAAAATT+GGG 0.422515 1_4:-56473594 Msa0171750:three_prime_UTR
CTATTACTTGATTGCCATTG+AGG 0.423798 1_4:-56483744 Msa0171750:intron
CGTATTTGGTTACAGTTGTT+GGG 0.425028 1_4:-56473568 Msa0171750:three_prime_UTR
GAGACCATAATCTGATCGTT+TGG 0.428281 1_4:+56475037 None:intergenic
CTCTTGAGAAAATGGCTACT+AGG 0.429756 1_4:-56474261 Msa0171750:CDS
ATTGCATGGTCAAATCTTGC+TGG 0.431271 1_4:-56482084 Msa0171750:CDS
CTGGACGGAGATCATGATTC+CGG 0.431969 1_4:+56484693 None:intergenic
CAAGATTGGTCAACGCTTGT+GGG 0.432953 1_4:+56480050 None:intergenic
TTGGCTCATCCGACAGCTCT+CGG 0.434068 1_4:-56484627 Msa0171750:CDS
ATGCTATGGCATGGAAAGGC+TGG 0.434506 1_4:+56477330 None:intergenic
ATCTGAAGCAGAGCACTTTG+TGG 0.435992 1_4:-56476735 Msa0171750:CDS
TGCTATCGTATCTGATATCA+TGG 0.437208 1_4:+56476703 None:intergenic
TTATAGGGAGATGAGAATCT+TGG 0.438587 1_4:+56484957 None:intergenic
CCTTGGTGCAATTTATTACC+AGG 0.442505 1_4:-56484125 Msa0171750:intron
GACCATGCATCAGCAAAATT+GGG 0.445415 1_4:+56483199 None:intergenic
CCAAGATTGGTCAACGCTTG+TGG 0.445603 1_4:+56480049 None:intergenic
AAAATGGCTACTAGGGTTGC+TGG 0.449044 1_4:-56474253 Msa0171750:CDS
CTGATGCATACTTGAACCTT+GGG 0.451840 1_4:-56481643 Msa0171750:CDS
GAACGGTTCAACGCGATCTC+CGG 0.452834 1_4:+56484594 None:intergenic
ACCAAGGAGTAGTAAATTAT+CGG 0.453046 1_4:+56484141 None:intergenic
ACCTTGCTCATAATGTATAC+TGG 0.453921 1_4:+56480637 None:intergenic
CACAGGAACAGATATATTAT+GGG 0.455571 1_4:-56474308 Msa0171750:CDS
CCCATATATGAAACTTGAAC+TGG 0.456705 1_4:+56475425 None:intergenic
CTTTCAGATGCTGCTGCACA+AGG 0.457171 1_4:-56474548 Msa0171750:intron
GACCTCATTGTAGCAAGATA+TGG 0.458721 1_4:+56479629 None:intergenic
AGCAGTGTGCAGCATATTTG+CGG 0.459706 1_4:+56477174 None:intergenic
GGCAATACTTATAAGGAGAT+TGG 0.459746 1_4:-56479564 Msa0171750:CDS
AGCCACCACTCTCAGCTTGT+TGG 0.461561 1_4:-56484646 Msa0171750:CDS
ATGGGATTTCCTGGCACAAC+CGG 0.462984 1_4:-56475407 Msa0171750:CDS
CCCTCCTGCTTGATTGGAAT+AGG 0.463550 1_4:+56477104 None:intergenic
AGACCATAATCTGATCGTTT+GGG 0.464870 1_4:+56475038 None:intergenic
TAATGCAGTGTGTCTGTTGT+TGG 0.467039 1_4:-56477542 Msa0171750:intron
CGGAATCATGATCTCCGTCC+AGG 0.468061 1_4:-56484692 Msa0171750:exon
GTGAATCAGTGAACAAAGAA+AGG 0.470944 1_4:+56484751 None:intergenic
GGCTCACTCTGTATTTCCAC+TGG 0.472212 1_4:-56474232 Msa0171750:CDS
CAAGAGCCAAAGCGCGCTGT+TGG 0.474016 1_4:+56474809 None:intergenic
ACTTGACCCAATGCTTGCTC+TGG 0.474813 1_4:-56477303 Msa0171750:CDS
CCACACTTTGCCGAGTGTTA+CGG 0.474939 1_4:-56483932 Msa0171750:CDS
AGCTCTCGGTTGCCGTTCAC+CGG 0.478100 1_4:-56484613 Msa0171750:CDS
TAGAGTCAGTGATGCTATCC+AGG 0.479729 1_4:-56479541 Msa0171750:CDS
CTACATTCCCGTCTCTAATA+CGG 0.479761 1_4:+56473696 None:intergenic
CCACCCATTGTCACATCTCA+TGG 0.482380 1_4:-56476937 Msa0171750:CDS
CGACGACGTCTCTTGCTTAA+CGG 0.483098 1_4:+56484570 None:intergenic
AAGAGCCAAAGCGCGCTGTT+GGG 0.483592 1_4:+56474810 None:intergenic
TATGAAACTTGAACTGGTGC+AGG 0.484055 1_4:+56475431 None:intergenic
ACCGATAATTTACTACTCCT+TGG 0.486401 1_4:-56484142 Msa0171750:CDS
GTAATCTATGTATGTAGCTC+CGG 0.486466 1_4:+56475388 None:intergenic
GGTTATGAAAGACTAAGGAT+TGG 0.487687 1_4:-56477080 Msa0171750:CDS
GGTTGATGCTCATAGTAACT+TGG 0.496415 1_4:-56482923 Msa0171750:CDS
CACGCTCATGATTCTAGTGA+AGG 0.496574 1_4:-56484529 Msa0171750:intron
AGCTACATACATAGATTACT+TGG 0.496829 1_4:-56475384 Msa0171750:CDS
CTTCAATCAACTTTACAAGA+TGG 0.496856 1_4:-56474988 Msa0171750:CDS
GCATGAGCTTCAGCCATAGT+AGG 0.497608 1_4:+56479492 None:intergenic
CAAAGTAGCAATGCGGGAGA+TGG 0.497765 1_4:+56475216 None:intergenic
CCTTCTCCGTCTCTGTTCAC+CGG 0.498189 1_4:-56484712 Msa0171750:five_prime_UTR
TAATTTCCAGAGCAAGCATT+GGG 0.501643 1_4:+56477297 None:intergenic
TATGTAGCTCCGGTTGTGCC+AGG 0.502858 1_4:+56475398 None:intergenic
GTTATGAAAGACTAAGGATT+GGG 0.503729 1_4:-56477079 Msa0171750:intron
TCTGTGAAGATAATTTGATC+AGG 0.505192 1_4:+56474518 None:intergenic
AGTCTCATTTCTCCTGCTGC+AGG 0.505262 1_4:+56474780 None:intergenic
TTGGCAACCCTCAGACATGC+GGG 0.505655 1_4:+56473642 None:intergenic
TGCTTGATTGGAATAGGAGC+AGG 0.506321 1_4:+56477110 None:intergenic
GGTCCTCCGCATTGATCCCT+TGG 0.509269 1_4:-56479610 Msa0171750:CDS
ATTGATCCCTTGGCAGCTGA+TGG 0.509463 1_4:-56479600 Msa0171750:CDS
AACATGAAAGGAATTGGATC+GGG 0.510090 1_4:+56484775 None:intergenic
AATGCAGTGTGTCTGTTGTT+GGG 0.510745 1_4:-56477541 Msa0171750:intron
GGCAGACCTTGTAATACTGC+AGG 0.511471 1_4:+56482028 None:intergenic
GGTAATCTAATGAAAGCTCA+AGG 0.514812 1_4:-56482901 Msa0171750:CDS
TGCTATAATATATAAGCAGC+AGG 0.515077 1_4:-56479842 Msa0171750:intron
GCATGGAAAGGCTGGACACT+AGG 0.517313 1_4:+56477338 None:intergenic
CGTTTACAAAGTAGCAATGC+GGG 0.517564 1_4:+56475210 None:intergenic
TAATCGCACGTATGTAATCC+TGG 0.519833 1_4:+56479523 None:intergenic
CAATCTTGGAAATATATACA+TGG 0.519958 1_4:-56480035 Msa0171750:CDS
TACAAGACCATCAGCTGCCA+AGG 0.521518 1_4:+56479593 None:intergenic
GATTACCGTCAGGCCTACTA+TGG 0.522671 1_4:-56479505 Msa0171750:CDS
ACACATTAGACGGAGTTCCT+TGG 0.522719 1_4:-56474477 Msa0171750:CDS
GTGTACCCAACAGCGCGCTT+TGG 0.522743 1_4:-56474815 Msa0171750:CDS
ATCAAGAATACATACCTCAA+TGG 0.523924 1_4:+56483730 None:intergenic
ACGGAGAAGGAACGAAGGAT+CGG 0.525168 1_4:+56484725 None:intergenic
TCTTGGTTCGGAAGAGATCT+GGG 0.527496 1_4:+56484974 None:intergenic
GGGAGATGAGAATCTTGGTT+CGG 0.529630 1_4:+56484962 None:intergenic
GAGATCTGGGCCGTCGATGT+AGG 0.529801 1_4:+56484987 None:intergenic
CTAATTTCCAGAGCAAGCAT+TGG 0.530198 1_4:+56477296 None:intergenic
AACCTACCTTTGCTATTGCA+TGG 0.530684 1_4:-56482098 Msa0171750:CDS
TTCACAGATGTTGCAATGAA+GGG 0.531625 1_4:-56474503 Msa0171750:CDS
CAGAGCCCTGCAGTATTACA+AGG 0.533229 1_4:-56482034 Msa0171750:intron
AGTACCATCATTTGGACTCA+AGG 0.534981 1_4:+56476778 None:intergenic
CTCTCTTTGACACAAACCGA+TGG 0.535023 1_4:-56473932 Msa0171750:CDS
TGGCTTCTGCCTATAAGGAT+AGG 0.535459 1_4:-56479464 Msa0171750:intron
TTGGAAATATATACATGGAA+TGG 0.538270 1_4:-56480030 Msa0171750:intron
GTCTCTTGCTTAACGGCGAA+CGG 0.538428 1_4:+56484577 None:intergenic
TAGTTAACCCCGCATGTCTG+AGG 0.539227 1_4:-56473650 Msa0171750:three_prime_UTR
AGGGAGGTTATGAAAGACTA+AGG 0.540074 1_4:-56477085 Msa0171750:CDS
AAGAACATACATTATAGCAC+TGG 0.540515 1_4:+56480186 None:intergenic
CTTTATCTTTCCTACATCGA+CGG 0.541818 1_4:-56484997 Msa0171750:five_prime_UTR
AAGAAAACGCGAACTCGAGA+AGG 0.542439 1_4:+56484924 None:intergenic
TCTTGAGAAAATGGCTACTA+GGG 0.544333 1_4:-56474260 Msa0171750:CDS
CTAGAATCATGAGCGTGTAA+AGG 0.546184 1_4:+56484535 None:intergenic
ATGTGGAATCTGCATTGCTC+TGG 0.546367 1_4:-56473791 Msa0171750:CDS
GAAAGGAATTGGATCGGGAG+AGG 0.548057 1_4:+56484780 None:intergenic
GTGGTATGTGCATTGCATAA+AGG 0.548073 1_4:+56474328 None:intergenic
GCCAGTATACATTATGAGCA+AGG 0.548161 1_4:-56480638 Msa0171750:CDS
GCTGAGAGTGGTGGCTGTAG+TGG 0.551447 1_4:+56484653 None:intergenic
TTCAGATGCTGCTGCACAAG+GGG 0.555143 1_4:-56474546 Msa0171750:intron
TGCTCCTATTCCAATCAAGC+AGG 0.555496 1_4:-56477108 Msa0171750:CDS
ATAGTAAAATTACCATTAGA+GGG 0.557033 1_4:+56483098 None:intergenic
GGTAATGCTCTGAAAGATGT+TGG 0.562829 1_4:-56480227 Msa0171750:CDS
GGTGAAGTTTCTGTTAAGAT+CGG 0.564002 1_4:+56484894 None:intergenic
ATTATGGGCAGGTCTGCCTA+TGG 0.564345 1_4:-56474293 Msa0171750:CDS
GGAACAGATATATTATGGGC+AGG 0.566521 1_4:-56474304 Msa0171750:CDS
TGAATCAGTGAACAAAGAAA+GGG 0.566577 1_4:+56484752 None:intergenic
TGGGTCAAGTGGATATGCTA+TGG 0.567625 1_4:+56477316 None:intergenic
TGCCATATTACCGTAACACT+CGG 0.568106 1_4:+56483922 None:intergenic
TGAGCAAGGTCAACTGGACA+TGG 0.570022 1_4:-56480624 Msa0171750:CDS
CTATTTAACACAGGCTCCGA+AGG 0.573091 1_4:+56473465 None:intergenic
AGAGCAAGCATTGGGTCAAG+TGG 0.574030 1_4:+56477305 None:intergenic
GGCTGTAAAGAGCTACAGAC+AGG 0.576286 1_4:-56479104 Msa0171750:CDS
AGTTAACCCCGCATGTCTGA+GGG 0.577484 1_4:-56473649 Msa0171750:three_prime_UTR
GCTACACTAAATGTAACCAC+TGG 0.577805 1_4:-56479889 Msa0171750:CDS
ATCTGCATTGCTCTGGTCAA+CGG 0.578259 1_4:-56473784 Msa0171750:CDS
TTATTTCAGTGGACATGTAG+AGG 0.579165 1_4:-56479128 Msa0171750:intron
CTGTATTTCCACTGGACTGG+GGG 0.579676 1_4:-56474224 Msa0171750:CDS
ACAAAGAAAGGGAACATGAA+AGG 0.580715 1_4:+56484763 None:intergenic
ATCCTGAAATATTTAATACA+TGG 0.581813 1_4:-56474965 Msa0171750:intron
GGATCGTGATCAAATGTTCA+AGG 0.582624 1_4:-56477517 Msa0171750:CDS
GTTGATGCTCATAGTAACTT+GGG 0.583189 1_4:-56482922 Msa0171750:CDS
AAGTATGCATCAGGGAAGGA+AGG 0.583668 1_4:+56481653 None:intergenic
GAACATGAAAGGAATTGGAT+CGG 0.586223 1_4:+56484774 None:intergenic
GAACCTTGGGAATGTATACA+AGG 0.587196 1_4:-56481630 Msa0171750:intron
TACGCATGTATGCACTAGCT+AGG 0.587484 1_4:+56483173 None:intergenic
GGGACGAGATGATTGTCAGC+AGG 0.587594 1_4:-56474204 Msa0171750:intron
GCTAGTGCATACATGCGTAA+AGG 0.588429 1_4:-56483169 Msa0171750:CDS
GGTGGCGATGGTGATCTCCC+TGG 0.590906 1_4:+56484674 None:intergenic
AGGAATACCGTATTAGAGAC+GGG 0.590915 1_4:-56473703 Msa0171750:three_prime_UTR
ATGATTCCGGTGAACAGAGA+CGG 0.591963 1_4:+56484706 None:intergenic
ATCCCATGAGATGTGACAAT+GGG 0.592439 1_4:+56476934 None:intergenic
AGATTACTTGGTCACTGATG+AGG 0.592637 1_4:-56475372 Msa0171750:intron
TAGATATGTGCATACTGAAG+AGG 0.593648 1_4:+56475254 None:intergenic
TCAAGAGGCAGAGTAACCAT+AGG 0.593677 1_4:+56474277 None:intergenic
GTCAACGCTTGTGGGTGGTT+AGG 0.593743 1_4:+56480058 None:intergenic
TCAGTGACCTTAAAATGCTG+TGG 0.594451 1_4:+56473761 None:intergenic
CAAGTGGATATGCTATGGCA+TGG 0.594989 1_4:+56477321 None:intergenic
TTTGGCAACCCTCAGACATG+CGG 0.595276 1_4:+56473641 None:intergenic
CAACCTTAATGGTTATACAA+AGG 0.596920 1_4:-56476645 Msa0171750:intron
ATCAACATGCTCTTCAGACA+CGG 0.597820 1_4:-56481478 Msa0171750:CDS
AGCAGGAGAAATGAGACTGA+GGG 0.597842 1_4:-56474775 Msa0171750:CDS
GGTGGTTAGGCTGTAACGAA+AGG 0.598171 1_4:+56480071 None:intergenic
GTTTGTGTCAAAGAGAGGAC+AGG 0.598476 1_4:+56473938 None:intergenic
TGAAGGGTGAACACATTAGA+CGG 0.599057 1_4:-56474487 Msa0171750:CDS
TAATATGGCAAATGCATGGA+AGG 0.599920 1_4:-56483909 Msa0171750:intron
ACATACGTGCGATTACCGTC+AGG 0.600155 1_4:-56479515 Msa0171750:CDS
TCTGTATTTCCACTGGACTG+GGG 0.600589 1_4:-56474225 Msa0171750:CDS
TCAACGCGATCTCCGGTGAA+CGG 0.601206 1_4:+56484601 None:intergenic
GAACGGCAACCGAGAGCTGT+CGG 0.601559 1_4:+56484618 None:intergenic
TAGGAATACCGTATTAGAGA+CGG 0.601667 1_4:-56473704 Msa0171750:three_prime_UTR
GAGAGTGGTGGCTGTAGTGG+TGG 0.601722 1_4:+56484656 None:intergenic
TCCAGATGATAAATAGACAT+AGG 0.604142 1_4:-56473723 Msa0171750:exon
TTACCTTGTATACATTCCCA+AGG 0.606164 1_4:+56481627 None:intergenic
CCATAATATATCTGTTCCTG+TGG 0.606701 1_4:+56474309 None:intergenic
CACCCATTGTCACATCTCAT+GGG 0.607132 1_4:-56476936 Msa0171750:CDS
GCTGCTTATATATTATAGCA+AGG 0.607657 1_4:+56479845 None:intergenic
TCCTATTCCAATCAAGCAGG+AGG 0.607994 1_4:-56477105 Msa0171750:CDS
TCTAATGAAAGCTCAAGGGT+TGG 0.609689 1_4:-56482896 Msa0171750:CDS
GCGATGGTGATCTCCCTGGA+CGG 0.610099 1_4:+56484678 None:intergenic
ACGGTAATATGGCAAATGCA+TGG 0.610222 1_4:-56483913 Msa0171750:CDS
GATTGGTCAACGCTTGTGGG+TGG 0.615687 1_4:+56480053 None:intergenic
GTCCAAATGATGGTACTGAA+TGG 0.616666 1_4:-56476772 Msa0171750:CDS
TTGAGAGAGAAAATTCTCGA+GGG 0.616981 1_4:+56484833 None:intergenic
TTTCAGATGCTGCTGCACAA+GGG 0.618278 1_4:-56474547 Msa0171750:intron
CCGTAACACTCGGCAAAGTG+TGG 0.618577 1_4:+56483932 None:intergenic
GGTGGCTGTAGTGGTGGCGA+TGG 0.618676 1_4:+56484662 None:intergenic
ATTTGACCATGCAATAGCAA+AGG 0.621397 1_4:+56482092 None:intergenic
TTATGCAATGCACATACCAC+AGG 0.622011 1_4:-56474325 Msa0171750:CDS
GGAATCATGATCTCCGTCCA+GGG 0.622815 1_4:-56484691 Msa0171750:exon
GTCAAGAAATAAGTCTGCCA+AGG 0.623121 1_4:+56474460 None:intergenic
GTAATCTAATGAAAGCTCAA+GGG 0.626437 1_4:-56482900 Msa0171750:CDS
CATCGGTTTGTGTCAAAGAG+AGG 0.626631 1_4:+56473933 None:intergenic
ATTGAGAGAGAAAATTCTCG+AGG 0.628319 1_4:+56484832 None:intergenic
TAACATGCAATAGCTTCTTG+AGG 0.628478 1_4:+56481500 None:intergenic
AAATGTTCAAGGAAGTAGAA+GGG 0.629997 1_4:-56477506 Msa0171750:CDS
GAAAGATGTTGGCAGAGTGG+AGG 0.630480 1_4:-56480216 Msa0171750:CDS
GACCATGCAATAGCAAAGGT+AGG 0.630488 1_4:+56482096 None:intergenic
TCTCTTTGACACAAACCGAT+GGG 0.631347 1_4:-56473931 Msa0171750:intron
TTCAGCCATAGTAGGCCTGA+CGG 0.631547 1_4:+56479500 None:intergenic
GCAGACCTTGTAATACTGCA+GGG 0.633448 1_4:+56482029 None:intergenic
TGCCATATCTTGCTACAATG+AGG 0.633633 1_4:-56479631 Msa0171750:CDS
GCACATCAAATGTACAAGAG+TGG 0.634726 1_4:-56484223 Msa0171750:CDS
GACACGGCCAAACTATGGCA+TGG 0.637088 1_4:-56481462 Msa0171750:CDS
TATGCACAACAGAAAGAATG+TGG 0.638579 1_4:-56476901 Msa0171750:CDS
ATGAGCCAACAAGCTGAGAG+TGG 0.640591 1_4:+56484641 None:intergenic
AGTAAATTATCGGTGCGAAG+CGG 0.641514 1_4:+56484151 None:intergenic
AGGTATGTGAGTAGTGACTT+TGG 0.648824 1_4:-56476963 Msa0171750:CDS
CAGCAGGAGAAATGAGACTG+AGG 0.649017 1_4:-56474776 Msa0171750:CDS
CAGAGACGGAGAAGGAACGA+AGG 0.654980 1_4:+56484720 None:intergenic
ACAAGACCATCAGCTGCCAA+GGG 0.656374 1_4:+56479594 None:intergenic
GGATATGCTATGGCATGGAA+AGG 0.659767 1_4:+56477326 None:intergenic
GTTCAAGTATGCATCAGGGA+AGG 0.661650 1_4:+56481649 None:intergenic
CTGCCAAGGGATCAATGCGG+AGG 0.661848 1_4:+56479607 None:intergenic
CCTATTCCAATCAAGCAGGA+GGG 0.662777 1_4:-56477104 Msa0171750:CDS
TCAAGTAATAGCGAATTGCA+AGG 0.664537 1_4:+56483756 None:intergenic
CCATGAGATGTGACAATGGG+TGG 0.665060 1_4:+56476937 None:intergenic
CCGGTGAACAGAGACGGAGA+AGG 0.665829 1_4:+56484712 None:intergenic
ATTCCAATCAAGCAGGAGGG+AGG 0.666622 1_4:-56477101 Msa0171750:CDS
TATGCCTTGAGTCCAAATGA+TGG 0.671518 1_4:-56476782 Msa0171750:CDS
ATGTAGATAAGAAAATCAAG+AGG 0.673481 1_4:-56473679 Msa0171750:three_prime_UTR
TGTTAAATAGTCATTCCTGT+CGG 0.674288 1_4:-56473452 Msa0171750:three_prime_UTR
CAGGAATGACTATTTAACAC+AGG 0.674400 1_4:+56473456 None:intergenic
CAAGGTTCAAGTATGCATCA+GGG 0.675585 1_4:+56481645 None:intergenic
GCAGTGTGTCTGTTGTTGGG+AGG 0.677864 1_4:-56477538 Msa0171750:intron
TGGCAACCCTCAGACATGCG+GGG 0.678068 1_4:+56473643 None:intergenic
AAATTGTTAATGCAGGAACA+TGG 0.679005 1_4:-56479938 Msa0171750:intron
GGAGCAGGATGGCTAAATGG+TGG 0.680480 1_4:+56477125 None:intergenic
CCTGGTAATAAATTGCACCA+AGG 0.681422 1_4:+56484125 None:intergenic
GGCATACAGTTGTTACCTCG+AGG 0.683086 1_4:-56482133 Msa0171750:CDS
AGCCAACAAGCTGAGAGTGG+TGG 0.683131 1_4:+56484644 None:intergenic
TTTCAGTGGACATGTAGAGG+CGG 0.686039 1_4:-56479125 Msa0171750:intron
GATCCCATGAGATGTGACAA+TGG 0.693395 1_4:+56476933 None:intergenic
GTTGTATACGCAATGCCTCG+AGG 0.703270 1_4:+56482118 None:intergenic
GCTGATGGTCTTGTAAACAG+AGG 0.706829 1_4:-56479585 Msa0171750:CDS
ATACGGTGCAGATAATCCAG+TGG 0.709165 1_4:+56479873 None:intergenic
TGATTGGAATAGGAGCAGGA+TGG 0.709742 1_4:+56477114 None:intergenic
GCACAACAGAAAGAATGTGG+AGG 0.713802 1_4:-56476898 Msa0171750:intron
TCGTTTACAAAGTAGCAATG+CGG 0.715211 1_4:+56475209 None:intergenic
TCTGAAAGATGTTGGCAGAG+TGG 0.720915 1_4:-56480219 Msa0171750:CDS
TTGTTAATGCAGGAACATGG+TGG 0.744612 1_4:-56479935 Msa0171750:intron
ATCAGATTATGGTCTCCCTG+AGG 0.756050 1_4:-56475030 Msa0171750:CDS
CAGCTGCCAAGGGATCAATG+CGG 0.837731 1_4:+56479604 None:intergenic
GATAGCAAAATTGATCAACG+AGG 0.841690 1_4:-56476687 Msa0171750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTTTCTATTAATAAT+TGG + chr1_4:56475069-56475088 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGATGTA+GGG + chr1_4:56476131-56476150 None:intergenic 10.0%
!! TAAAAAAAAAAAAAAGATGT+AGG + chr1_4:56476132-56476151 None:intergenic 10.0%
!! AAAAAAAAAAAAATTTGAGT+AGG + chr1_4:56478344-56478363 None:intergenic 10.0%
!!! ACTCAAATTTTTTTTTTTTT+TGG - chr1_4:56478344-56478363 Msa0171750:intron 10.0%
!!! ATATTTTACTATTCAATTAT+TGG + chr1_4:56480152-56480171 None:intergenic 10.0%
!! TTAATCAAAATTCATAAATA+AGG - chr1_4:56481871-56481890 Msa0171750:intron 10.0%
!!! TTAATTTGAAGTTATATTTA+TGG - chr1_4:56481934-56481953 Msa0171750:intron 10.0%
!! TAAAAGAAAATTAATAACTA+GGG + chr1_4:56482721-56482740 None:intergenic 10.0%
!! ATAAAAGAAAATTAATAACT+AGG + chr1_4:56482722-56482741 None:intergenic 10.0%
!!! TTTTTGATTGTTTATATATA+TGG - chr1_4:56482835-56482854 Msa0171750:intron 10.0%
!!! TTTTGTACAATTTAATTTTT+CGG - chr1_4:56484560-56484579 Msa0171750:CDS 10.0%
!!! AATATAGTCAATCTTATTTT+TGG + chr1_4:56474873-56474892 None:intergenic 15.0%
!!! AAAAAAAAAGCATCAAATAT+GGG + chr1_4:56475136-56475155 None:intergenic 15.0%
!!! AAAAAAAAAAGCATCAAATA+TGG + chr1_4:56475137-56475156 None:intergenic 15.0%
!!! TTGTTTAGTTTTTTTTATGT+AGG - chr1_4:56475861-56475880 Msa0171750:intron 15.0%
!!! TAGTTACTGATTTAAATAAT+TGG - chr1_4:56476157-56476176 Msa0171750:intron 15.0%
!!! ATATTTTGCTTTCTTATTAA+TGG - chr1_4:56476538-56476557 Msa0171750:intron 15.0%
!!! AATTTATTTATTTTTGCTAC+AGG - chr1_4:56476643-56476662 Msa0171750:intron 15.0%
!!! ACATTTTCTAAAAATATTTC+AGG - chr1_4:56476760-56476779 Msa0171750:CDS 15.0%
!! GTTTGCATATTTATATTAAT+AGG - chr1_4:56477392-56477411 Msa0171750:intron 15.0%
!! CATATTTATATTAATAGGAT+TGG - chr1_4:56477397-56477416 Msa0171750:intron 15.0%
!! TTTATTAATTCAAATTACCA+CGG - chr1_4:56477716-56477735 Msa0171750:intron 15.0%
!!! TATTCAGTTTTAATTATGAA+AGG - chr1_4:56477988-56478007 Msa0171750:intron 15.0%
!! TGAAAATAGTAAATAAAAGA+AGG - chr1_4:56478093-56478112 Msa0171750:intron 15.0%
!! ATTGACTAAAAAATAACAAA+TGG + chr1_4:56479446-56479465 None:intergenic 15.0%
!! TTAATGGTAAAAAAAACAAT+AGG - chr1_4:56480075-56480094 Msa0171750:CDS 15.0%
!!! TTTTTAGCATTGATATAAAA+TGG + chr1_4:56480305-56480324 None:intergenic 15.0%
!! CTAATATAAATGAAAAGTTA+AGG + chr1_4:56480340-56480359 None:intergenic 15.0%
!!! ATGTAACAATTTTAATTACA+TGG - chr1_4:56481451-56481470 Msa0171750:intron 15.0%
!!! TGTAACAATTTTAATTACAT+GGG - chr1_4:56481452-56481471 Msa0171750:intron 15.0%
!! ATTTACAATTCAATATTGTA+TGG - chr1_4:56482094-56482113 Msa0171750:CDS 15.0%
!!! TTTATCTGTGAATTAATTTT+TGG - chr1_4:56482737-56482756 Msa0171750:intron 15.0%
!!! TTATATGCTGAAAATTTTAT+AGG - chr1_4:56484610-56484629 Msa0171750:CDS 15.0%
!! TAATTTAGTTACTCAAAATT+GGG - chr1_4:56484859-56484878 Msa0171750:five_prime_UTR 15.0%
!!! GTTTTTCAATTTCATAGTTA+GGG - chr1_4:56474039-56474058 Msa0171750:intron 20.0%
!!! TCAATCTTATTTTTGGTTAT+TGG + chr1_4:56474866-56474885 None:intergenic 20.0%
!! ATATTATTAATTGTTGCTGT+CGG - chr1_4:56474949-56474968 Msa0171750:intron 20.0%
!!! AAAAAAAAGCATCAAATATG+GGG + chr1_4:56475135-56475154 None:intergenic 20.0%
!! ATAGTAAAATTACCATTAGA+GGG + chr1_4:56475358-56475377 None:intergenic 20.0%
!! AATAGTAAAATTACCATTAG+AGG + chr1_4:56475359-56475378 None:intergenic 20.0%
!! CTTATATGTTATTATCTCTA+AGG - chr1_4:56475404-56475423 Msa0171750:CDS 20.0%
!! AAAGTTCAATTAATTAGAGA+AGG + chr1_4:56475452-56475471 None:intergenic 20.0%
!! TTCTCTAATTAATTGAACTT+TGG - chr1_4:56475451-56475470 Msa0171750:CDS 20.0%
!!! ATGTTTGAATATGTATCTTT+TGG - chr1_4:56475617-56475636 Msa0171750:intron 20.0%
!! CATAAAAAAAACTAAACAAC+AGG + chr1_4:56475860-56475879 None:intergenic 20.0%
!!! TTTAGTTTTTTTTATGTAGG+TGG - chr1_4:56475864-56475883 Msa0171750:intron 20.0%
!!! CATTTTTATCAGGTAAAAAT+GGG + chr1_4:56476054-56476073 None:intergenic 20.0%
!!! AATAAAAGACTAAGTATTGA+AGG + chr1_4:56476108-56476127 None:intergenic 20.0%
!!! TTACTGATTTAAATAATTGG+TGG - chr1_4:56476160-56476179 Msa0171750:intron 20.0%
!!! TACTGATTTAAATAATTGGT+GGG - chr1_4:56476161-56476180 Msa0171750:intron 20.0%
!! GTAAATATATCATAGCTAAT+CGG + chr1_4:56476513-56476532 None:intergenic 20.0%
!!! AAAAAAAAAAAAAGCTTGCT+AGG - chr1_4:56477442-56477461 Msa0171750:intron 20.0%
!!! AAAAAAAAAAAAGCTTGCTA+GGG - chr1_4:56477443-56477462 Msa0171750:intron 20.0%
!! CATAACTATATATTGCATAA+AGG + chr1_4:56477551-56477570 None:intergenic 20.0%
!! CTTTATGCAATATATAGTTA+TGG - chr1_4:56477549-56477568 Msa0171750:intron 20.0%
!! TTAAAAGACAAAAAACAAAG+TGG + chr1_4:56478014-56478033 None:intergenic 20.0%
!!! TATTTTAGATTAGATGCAAT+TGG - chr1_4:56478179-56478198 Msa0171750:intron 20.0%
!!! AACATTATCTTTGTTTTTCT+AGG - chr1_4:56478204-56478223 Msa0171750:intron 20.0%
!!! ACATTATCTTTGTTTTTCTA+GGG - chr1_4:56478205-56478224 Msa0171750:intron 20.0%
!!! TTATGCTCTTATTTATTTCT+TGG - chr1_4:56478773-56478792 Msa0171750:intron 20.0%
!!! ATTCTTTTCAAATATGAAAG+TGG - chr1_4:56480567-56480586 Msa0171750:CDS 20.0%
!! TATTAGTTATTGTTTAGTCT+TGG - chr1_4:56480788-56480807 Msa0171750:intron 20.0%
!!! ATTAGTTATTGTTTAGTCTT+GGG - chr1_4:56480789-56480808 Msa0171750:intron 20.0%
!! AAAGAAACTACATATATTAC+GGG + chr1_4:56480867-56480886 None:intergenic 20.0%
!! CAAAGAAACTACATATATTA+CGG + chr1_4:56480868-56480887 None:intergenic 20.0%
!! ATAGAAAAACAAAATAACTG+AGG + chr1_4:56481076-56481095 None:intergenic 20.0%
!!! TTAATTACATGGGAAATTTT+TGG - chr1_4:56481462-56481481 Msa0171750:CDS 20.0%
!! ACAACAATAATTCAACATAA+GGG + chr1_4:56481839-56481858 None:intergenic 20.0%
!! TACAACAATAATTCAACATA+AGG + chr1_4:56481840-56481859 None:intergenic 20.0%
!! TTGTGATAAAGAAATCTTTA+AGG + chr1_4:56482067-56482086 None:intergenic 20.0%
!! TCCAAATATTATAGTATAGA+TGG - chr1_4:56482258-56482277 Msa0171750:intron 20.0%
!! ACCATCTATACTATAATATT+TGG + chr1_4:56482262-56482281 None:intergenic 20.0%
!! ATATTATAGTATAGATGGTA+TGG - chr1_4:56482263-56482282 Msa0171750:intron 20.0%
!!! GTTTGAATTACAGTTTTTAT+TGG + chr1_4:56482400-56482419 None:intergenic 20.0%
!! GTAACCTCAATATTATAATA+TGG + chr1_4:56482484-56482503 None:intergenic 20.0%
!!! TTTTTATCATTTTACTCTGT+TGG - chr1_4:56482584-56482603 Msa0171750:intron 20.0%
!! AAAACATAACAGAGTAAAAT+GGG + chr1_4:56482683-56482702 None:intergenic 20.0%
!! TCCATACTATAATTCATAAA+AGG - chr1_4:56482760-56482779 Msa0171750:intron 20.0%
!!! TCCTTTTATGAATTATAGTA+TGG + chr1_4:56482764-56482783 None:intergenic 20.0%
!!! TAGGTATGTTTTTTATCTTT+TGG - chr1_4:56482931-56482950 Msa0171750:intron 20.0%
!! ATCCTGAAATATTTAATACA+TGG - chr1_4:56483488-56483507 Msa0171750:intron 20.0%
!! TACCATGTATTAAATATTTC+AGG + chr1_4:56483493-56483512 None:intergenic 20.0%
!!! ATTTAATACATGGTAATGTT+AGG - chr1_4:56483498-56483517 Msa0171750:intron 20.0%
!! TTGAAAACATTAAATACACA+TGG + chr1_4:56483551-56483570 None:intergenic 20.0%
!!! TTTTTTAATCAATTCTTCAG+TGG - chr1_4:56483787-56483806 Msa0171750:intron 20.0%
!!! AAGAAGTACAATAATTATAG+AGG + chr1_4:56483888-56483907 None:intergenic 20.0%
!!! TACTGATTATGTTTTCTTTT+AGG - chr1_4:56484102-56484121 Msa0171750:intron 20.0%
!! CAACTGACAAAATATTAAAT+TGG + chr1_4:56484286-56484305 None:intergenic 20.0%
!! AAGAAAAATTCAACTTACAA+GGG + chr1_4:56484354-56484373 None:intergenic 20.0%
!! AAAGAAAAATTCAACTTACA+AGG + chr1_4:56484355-56484374 None:intergenic 20.0%
!!! TGTATATTCTTTGGAATTTT+TGG + chr1_4:56484833-56484852 None:intergenic 20.0%
!! TTACAACAATGTATATTCTT+TGG + chr1_4:56484842-56484861 None:intergenic 20.0%
!! GTAATTTAGTTACTCAAAAT+TGG - chr1_4:56484858-56484877 Msa0171750:five_prime_UTR 20.0%
!!! TCTTCTTTTTTACTAATACA+AGG + chr1_4:56484914-56484933 None:intergenic 20.0%
!! AGAATTTTCTCTCTCAATTA+GGG - chr1_4:56473626-56473645 Msa0171750:three_prime_UTR 25.0%
! AAACCAAAACCAAGTATAAT+TGG + chr1_4:56474023-56474042 None:intergenic 25.0%
!!! GGTTTTTCAATTTCATAGTT+AGG - chr1_4:56474038-56474057 Msa0171750:intron 25.0%
!! ACGAAATTGATTCAATAAGA+AGG + chr1_4:56474121-56474140 None:intergenic 25.0%
!! TATTCTGTCTGTTATTTGTT+TGG - chr1_4:56474361-56474380 Msa0171750:intron 25.0%
!! ATTCTGTCTGTTATTTGTTT+GGG - chr1_4:56474362-56474381 Msa0171750:intron 25.0%
!!! TGTACTATTTTAGTGTTTAG+TGG - chr1_4:56474609-56474628 Msa0171750:intron 25.0%
!!! AAAAAAAGCATCAAATATGG+GGG + chr1_4:56475134-56475153 None:intergenic 25.0%
! GAGATAATAACATATAAGCT+TGG + chr1_4:56475402-56475421 None:intergenic 25.0%
!! AAAAAAGCATGTCAAATGTT+AGG + chr1_4:56475597-56475616 None:intergenic 25.0%
! TTATGAACTGTCAAATCTTA+TGG - chr1_4:56475672-56475691 Msa0171750:intron 25.0%
!!! TTTTTTTTATGTAGGTGGTT+AGG - chr1_4:56475869-56475888 Msa0171750:intron 25.0%
!!! CCATTTTTATCAGGTAAAAA+TGG + chr1_4:56476055-56476074 None:intergenic 25.0%
!!! CCATTTTTACCTGATAAAAA+TGG - chr1_4:56476052-56476071 Msa0171750:intron 25.0%
!!! TTAATCCTTGTTTCTATATC+AGG + chr1_4:56476679-56476698 None:intergenic 25.0%
! TAACGTGTTAAGAATATGAT+AGG - chr1_4:56476846-56476865 Msa0171750:intron 25.0%
! GAAAAAAAAAAAGCCTTTCA+AGG + chr1_4:56476909-56476928 None:intergenic 25.0%
!! TCCTTTTCTTTATGAATGTA+TGG - chr1_4:56477136-56477155 Msa0171750:CDS 25.0%
! ACCATACATTCATAAAGAAA+AGG + chr1_4:56477140-56477159 None:intergenic 25.0%
! TCTTTATGAATGTATGGTTA+TGG - chr1_4:56477142-56477161 Msa0171750:CDS 25.0%
! AATAGTAAAACACTGAATAG+TGG - chr1_4:56477639-56477658 Msa0171750:intron 25.0%
! AAATGATGTTACAGGTAATT+TGG - chr1_4:56477793-56477812 Msa0171750:intron 25.0%
! TTTGGAAGCTTACAATAATT+TGG - chr1_4:56477895-56477914 Msa0171750:intron 25.0%
!! AATCTAAAATAGCACGTTTA+GGG + chr1_4:56478170-56478189 None:intergenic 25.0%
!! TAATCTAAAATAGCACGTTT+AGG + chr1_4:56478171-56478190 None:intergenic 25.0%
! CATGTATATATTTCCAAGAT+TGG + chr1_4:56478420-56478439 None:intergenic 25.0%
! CAATCTTGGAAATATATACA+TGG - chr1_4:56478418-56478437 Msa0171750:intron 25.0%
! TTGATTGAAATTGTTAATGC+AGG - chr1_4:56478508-56478527 Msa0171750:intron 25.0%
! ATTATAGCAAGGTTGTTATA+CGG + chr1_4:56478600-56478619 None:intergenic 25.0%
! TTATATAGAACAAATGCTCT+AGG + chr1_4:56478645-56478664 None:intergenic 25.0%
! TATTTCTTGGACAATATTGT+AGG - chr1_4:56478786-56478805 Msa0171750:intron 25.0%
! ATTTCTTGGACAATATTGTA+GGG - chr1_4:56478787-56478806 Msa0171750:intron 25.0%
! TGAAATTCTGTTTATTTCAG+TGG - chr1_4:56479314-56479333 Msa0171750:intron 25.0%
! GTTTATTGTATCTCTTATGA+TGG - chr1_4:56479485-56479504 Msa0171750:CDS 25.0%
! AAGTATGAAGAAGACTTATT+TGG - chr1_4:56479949-56479968 Msa0171750:intron 25.0%
! AGTATGAAGAAGACTTATTT+GGG - chr1_4:56479950-56479969 Msa0171750:intron 25.0%
! GTGATTAAGGCAAAAATAAT+GGG + chr1_4:56480526-56480545 None:intergenic 25.0%
! AGTGATTAAGGCAAAAATAA+TGG + chr1_4:56480527-56480546 None:intergenic 25.0%
!!! ATTATTTTTGCCTTAATCAC+TGG - chr1_4:56480526-56480545 Msa0171750:intron 25.0%
! ATATCCAAAATCAAGATGAT+AGG + chr1_4:56480680-56480699 None:intergenic 25.0%
! AAGATCAACTCAATAACAAA+TGG - chr1_4:56481201-56481220 Msa0171750:intron 25.0%
! ATAGAGAACAGAAGAATATT+TGG + chr1_4:56481615-56481634 None:intergenic 25.0%
! TTGACAATGTATACATGTAT+AGG - chr1_4:56481640-56481659 Msa0171750:CDS 25.0%
!!! TATAACCATTAAGGTTGATA+AGG + chr1_4:56481805-56481824 None:intergenic 25.0%
! TATTGTATGGAATTAAGTGT+TGG - chr1_4:56482107-56482126 Msa0171750:CDS 25.0%
! AATATCCTTTGATAAGAAGT+AGG - chr1_4:56482225-56482244 Msa0171750:intron 25.0%
!!! CAAACTATTTAGTGCTTTTT+TGG - chr1_4:56482415-56482434 Msa0171750:intron 25.0%
! GTCTCCATATTATAATATTG+AGG - chr1_4:56482477-56482496 Msa0171750:intron 25.0%
! CAAAACATAACAGAGTAAAA+TGG + chr1_4:56482684-56482703 None:intergenic 25.0%
! TGATCTTACTTATTGAGTAA+AGG - chr1_4:56482896-56482915 Msa0171750:CDS 25.0%
! GAGTAAATGAGTTAATAAGA+TGG + chr1_4:56483131-56483150 None:intergenic 25.0%
! CTTTGTAAACGATTATAAAC+AGG - chr1_4:56483255-56483274 Msa0171750:intron 25.0%
! GAAATTATGTACATGTTGTA+AGG - chr1_4:56483299-56483318 Msa0171750:intron 25.0%
! CTTGTTTATTCAGAAAAATC+AGG - chr1_4:56483369-56483388 Msa0171750:intron 25.0%
!! AATTTTCAGCATATAACTTG+AGG + chr1_4:56484606-56484625 None:intergenic 25.0%
!!! ACAGAGCATATTTTAAAATG+TGG - chr1_4:56484645-56484664 Msa0171750:CDS 25.0%
! ATGTAGATAAGAAAATCAAG+AGG - chr1_4:56484774-56484793 Msa0171750:five_prime_UTR 25.0%
!! TATTAGAAGATGTTTGCTTT+TGG - chr1_4:56484959-56484978 Msa0171750:five_prime_UTR 25.0%
!!! GAAGGAGAAGTGTTTTTATA+GGG + chr1_4:56473514-56473533 None:intergenic 30.0%
!!! AGAAGGAGAAGTGTTTTTAT+AGG + chr1_4:56473515-56473534 None:intergenic 30.0%
! TTTCTTCTTCTCTACGATTT+TGG + chr1_4:56473600-56473619 None:intergenic 30.0%
! GAGAATTTTCTCTCTCAATT+AGG - chr1_4:56473625-56473644 Msa0171750:three_prime_UTR 30.0%
TGAATCAGTGAACAAAGAAA+GGG + chr1_4:56473704-56473723 None:intergenic 30.0%
TTTCATAGTTAGGGTTTCTT+AGG - chr1_4:56474048-56474067 Msa0171750:intron 30.0%
TTCATAGTTAGGGTTTCTTA+GGG - chr1_4:56474049-56474068 Msa0171750:intron 30.0%
! TTCAATAAGAAGGCATAAAC+TGG + chr1_4:56474111-56474130 None:intergenic 30.0%
CGAGGAATATGATTGTTTAA+CGG - chr1_4:56474146-56474165 Msa0171750:intron 30.0%
ACCAAGGAGTAGTAAATTAT+CGG + chr1_4:56474315-56474334 None:intergenic 30.0%
ACAGAATAGAAACATTTACC+TGG + chr1_4:56474349-56474368 None:intergenic 30.0%
GGGTTCATATTTATAATGCT+TGG - chr1_4:56474382-56474401 Msa0171750:intron 30.0%
!! CAAAAAATGAAGAAGCACTT+AGG - chr1_4:56474492-56474511 Msa0171750:CDS 30.0%
! AATTGAACTTTCCTTTTTGC+AGG - chr1_4:56474658-56474677 Msa0171750:intron 30.0%
ATCAAGAATACATACCTCAA+TGG + chr1_4:56474726-56474745 None:intergenic 30.0%
GGTTATTGGACAACAATATT+TGG + chr1_4:56474852-56474871 None:intergenic 30.0%
TTTAGTACTAACACACAAAC+TGG - chr1_4:56474902-56474921 Msa0171750:intron 30.0%
AGCGTATAACATAGCAAAAA+AGG + chr1_4:56475168-56475187 None:intergenic 30.0%
! TTGAAGCATCTAATCAAGAA+TGG + chr1_4:56475196-56475215 None:intergenic 30.0%
TTCAATATTTATCCCTCTGT+TGG - chr1_4:56475211-56475230 Msa0171750:CDS 30.0%
!! TGTTATTATCTCTAAGGCAT+AGG - chr1_4:56475410-56475429 Msa0171750:CDS 30.0%
!! GTTATTATCTCTAAGGCATA+GGG - chr1_4:56475411-56475430 Msa0171750:CDS 30.0%
GTAATCTAATGAAAGCTCAA+GGG - chr1_4:56475553-56475572 Msa0171750:intron 30.0%
AAATGTTAGGACTTACTTCT+TGG + chr1_4:56475584-56475603 None:intergenic 30.0%
ACTGTCAAATCTTATGGATA+AGG - chr1_4:56475678-56475697 Msa0171750:intron 30.0%
!!! AAGCCAAATTAAGAGTGTTT+TGG + chr1_4:56475957-56475976 None:intergenic 30.0%
!! ACATTGGTGTTTTTCATTCT+GGG + chr1_4:56476009-56476028 None:intergenic 30.0%
TGATTTAAATAATTGGTGGG+TGG - chr1_4:56476164-56476183 Msa0171750:intron 30.0%
ATATATCATAGCTAATCGGA+CGG + chr1_4:56476509-56476528 None:intergenic 30.0%
! GAAGTTACTAATTGCACTTT+TGG - chr1_4:56476570-56476589 Msa0171750:intron 30.0%
GAATTCCTGATATAGAAACA+AGG - chr1_4:56476671-56476690 Msa0171750:CDS 30.0%
GTGTTAAGAATATGATAGGT+TGG - chr1_4:56476850-56476869 Msa0171750:intron 30.0%
!! GATGCAACTAGAATTTTGAT+CGG - chr1_4:56476872-56476891 Msa0171750:intron 30.0%
ATAAGATCAGTGCAAAGATA+TGG - chr1_4:56477076-56477095 Msa0171750:intron 30.0%
TAAGATCAGTGCAAAGATAT+GGG - chr1_4:56477077-56477096 Msa0171750:intron 30.0%
AGATATGGGATTGTAAGAAA+TGG - chr1_4:56477091-56477110 Msa0171750:CDS 30.0%
TGCAATGGTTATACAACTAA+TGG + chr1_4:56477268-56477287 None:intergenic 30.0%
! ACTATATCACAGTTTTGCAA+TGG + chr1_4:56477283-56477302 None:intergenic 30.0%
AACTGTGATATAGTATCATG+TGG - chr1_4:56477289-56477308 Msa0171750:intron 30.0%
TCCTTCGTTGACATTAATAA+TGG + chr1_4:56477497-56477516 None:intergenic 30.0%
AAGGAGTTTCATAGTTATGT+TGG - chr1_4:56477512-56477531 Msa0171750:CDS 30.0%
ATGCAATATATAGTTATGGC+TGG - chr1_4:56477553-56477572 Msa0171750:intron 30.0%
GTCCTTTATTCTGATATCTA+TGG - chr1_4:56477674-56477693 Msa0171750:intron 30.0%
TGCCATAGATATCAGAATAA+AGG + chr1_4:56477679-56477698 None:intergenic 30.0%
TGTGTTACAAATGATGTTAC+AGG - chr1_4:56477785-56477804 Msa0171750:intron 30.0%
TTGTAAGCTTCCAAAAATCT+GGG + chr1_4:56477890-56477909 None:intergenic 30.0%
ATTGTAAGCTTCCAAAAATC+TGG + chr1_4:56477891-56477910 None:intergenic 30.0%
GAAGCTTACAATAATTTGGT+TGG - chr1_4:56477899-56477918 Msa0171750:intron 30.0%
TGTTTAGTTGAAAATGCTGA+GGG - chr1_4:56477943-56477962 Msa0171750:intron 30.0%
AAGAACATACATTATAGCAC+TGG + chr1_4:56478270-56478289 None:intergenic 30.0%
AATTTGAGTAGGAATCTAGT+GGG + chr1_4:56478333-56478352 None:intergenic 30.0%
AAATTTGAGTAGGAATCTAG+TGG + chr1_4:56478334-56478353 None:intergenic 30.0%
AAATTGTTAATGCAGGAACA+TGG - chr1_4:56478515-56478534 Msa0171750:intron 30.0%
GCTGCTTATATATTATAGCA+AGG + chr1_4:56478611-56478630 None:intergenic 30.0%
TGCTATAATATATAAGCAGC+AGG - chr1_4:56478611-56478630 Msa0171750:intron 30.0%
ATATAACCACGATAGAACAT+AGG - chr1_4:56478659-56478678 Msa0171750:intron 30.0%
TATTTCGTTGACAGTATTGT+AGG - chr1_4:56478746-56478765 Msa0171750:intron 30.0%
ATTTCGTTGACAGTATTGTA+GGG - chr1_4:56478747-56478766 Msa0171750:intron 30.0%
TTTCTTGGACAATATTGTAG+GGG - chr1_4:56478788-56478807 Msa0171750:intron 30.0%
AAACAGAGGCAATACTTATA+AGG - chr1_4:56478882-56478901 Msa0171750:intron 30.0%
ATTAGCATACCTATCCTTAT+AGG + chr1_4:56479001-56479020 None:intergenic 30.0%
! TTTTGCTTCAGTTTCAATGT+TGG + chr1_4:56479044-56479063 None:intergenic 30.0%
CATAATATTGAAATTGTGCC+TGG - chr1_4:56479118-56479137 Msa0171750:CDS 30.0%
!! GGTTATACTACCATTTTGAT+TGG + chr1_4:56479985-56480004 None:intergenic 30.0%
TAACCAGATTTGTAGTATAG+TGG - chr1_4:56480000-56480019 Msa0171750:intron 30.0%
!! CAACATGTGAAGTGTTTTAA+TGG - chr1_4:56480059-56480078 Msa0171750:CDS 30.0%
TTGTTATGATATGTTGTTCG+TGG - chr1_4:56480751-56480770 Msa0171750:intron 30.0%
AAATGTTCAAGGAAGTAGAA+GGG - chr1_4:56480947-56480966 Msa0171750:intron 30.0%
TCAGAAGACAAATTAATGTC+AGG - chr1_4:56480974-56480993 Msa0171750:intron 30.0%
GTTATGAAAGACTAAGGATT+GGG - chr1_4:56481374-56481393 Msa0171750:intron 30.0%
ATTGTTACATATCTCTCACA+AGG + chr1_4:56481441-56481460 None:intergenic 30.0%
CAAATCCTTATCAACCTTAA+TGG - chr1_4:56481797-56481816 Msa0171750:intron 30.0%
CAACCTTAATGGTTATACAA+AGG - chr1_4:56481808-56481827 Msa0171750:intron 30.0%
CTACCTTTGTATAACCATTA+AGG + chr1_4:56481814-56481833 None:intergenic 30.0%
TGAGAATACTATGATATGAG+TGG - chr1_4:56482176-56482195 Msa0171750:intron 30.0%
ACTATCCTACTTCTTATCAA+AGG + chr1_4:56482233-56482252 None:intergenic 30.0%
AGAATATCCCATTAGTTAAG+AGG - chr1_4:56482370-56482389 Msa0171750:intron 30.0%
GAATATCCCATTAGTTAAGA+GGG - chr1_4:56482371-56482390 Msa0171750:intron 30.0%
ATAATATTGAGGTTACAGAC+TGG - chr1_4:56482488-56482507 Msa0171750:intron 30.0%
!! TTTCAAGTTGGATTTGACAT+TGG + chr1_4:56482534-56482553 None:intergenic 30.0%
CTAAGCATGATTAAATGTGA+GGG + chr1_4:56482632-56482651 None:intergenic 30.0%
ATATAGCTAATCCTACTTAG+TGG - chr1_4:56482805-56482824 Msa0171750:intron 30.0%
TATAGCTAATCCTACTTAGT+GGG - chr1_4:56482806-56482825 Msa0171750:intron 30.0%
ATCAGCTATATAAATTCACC+AGG + chr1_4:56482880-56482899 None:intergenic 30.0%
!! TTTGGTTATTTCTGATTGCA+TGG - chr1_4:56482949-56482968 Msa0171750:intron 30.0%
! ACCAGTTCAAGTTTCATATA+TGG - chr1_4:56483027-56483046 Msa0171750:intron 30.0%
! CCAGTTCAAGTTTCATATAT+GGG - chr1_4:56483028-56483047 Msa0171750:intron 30.0%
AGCTACATACATAGATTACT+TGG - chr1_4:56483069-56483088 Msa0171750:intron 30.0%
! GTATGTATGTTGACTATACA+TGG - chr1_4:56483321-56483340 Msa0171750:intron 30.0%
CTTCAATCAACTTTACAAGA+TGG - chr1_4:56483465-56483484 Msa0171750:intron 30.0%
AAACATAAGCAGACATGTAA+AGG + chr1_4:56483589-56483608 None:intergenic 30.0%
!!! GCTTATGTTTGTGTTGTTTT+AGG - chr1_4:56483599-56483618 Msa0171750:intron 30.0%
ATTAAGCAGCACATACAAAT+AGG + chr1_4:56483851-56483870 None:intergenic 30.0%
!!! TGTGCTGCTTAATTTTTTTG+TGG - chr1_4:56483858-56483877 Msa0171750:intron 30.0%
TCTGTGAAGATAATTTGATC+AGG + chr1_4:56483938-56483957 None:intergenic 30.0%
! GTCACTTAAATAGTTTTCGT+TGG - chr1_4:56484070-56484089 Msa0171750:intron 30.0%
CACAGGAACAGATATATTAT+GGG - chr1_4:56484145-56484164 Msa0171750:CDS 30.0%
TTTCATACTACATGGTTTCA+TGG + chr1_4:56484410-56484429 None:intergenic 30.0%
TCATACTCTTTCATACTACA+TGG + chr1_4:56484418-56484437 None:intergenic 30.0%
TATAATTTGAACTCACCCAT+CGG + chr1_4:56484540-56484559 None:intergenic 30.0%
TCCAGATGATAAATAGACAT+AGG - chr1_4:56484730-56484749 Msa0171750:five_prime_UTR 30.0%
TCCTATGTCTATTTATCATC+TGG + chr1_4:56484734-56484753 None:intergenic 30.0%
TGTTAAATAGTCATTCCTGT+CGG - chr1_4:56485001-56485020 Msa0171750:five_prime_UTR 30.0%
CTTTATCTTTCCTACATCGA+CGG - chr1_4:56473456-56473475 Msa0171750:three_prime_UTR 35.0%
TTATAGGGAGATGAGAATCT+TGG + chr1_4:56473499-56473518 None:intergenic 35.0%
GGTGAAGTTTCTGTTAAGAT+CGG + chr1_4:56473562-56473581 None:intergenic 35.0%
!! CGATTTTGGAAGATGTCTAT+GGG + chr1_4:56473586-56473605 None:intergenic 35.0%
!! ACGATTTTGGAAGATGTCTA+TGG + chr1_4:56473587-56473606 None:intergenic 35.0%
TTGAGAGAGAAAATTCTCGA+GGG + chr1_4:56473623-56473642 None:intergenic 35.0%
ATTGAGAGAGAAAATTCTCG+AGG + chr1_4:56473624-56473643 None:intergenic 35.0%
AACATGAAAGGAATTGGATC+GGG + chr1_4:56473681-56473700 None:intergenic 35.0%
GAACATGAAAGGAATTGGAT+CGG + chr1_4:56473682-56473701 None:intergenic 35.0%
AAAGGGAACATGAAAGGAAT+TGG + chr1_4:56473687-56473706 None:intergenic 35.0%
ACAAAGAAAGGGAACATGAA+AGG + chr1_4:56473693-56473712 None:intergenic 35.0%
GTGAATCAGTGAACAAAGAA+AGG + chr1_4:56473705-56473724 None:intergenic 35.0%
TCATAGTTAGGGTTTCTTAG+GGG - chr1_4:56474050-56474069 Msa0171750:intron 35.0%
GAATCAATTTCGTACTTTCG+AGG - chr1_4:56474128-56474147 Msa0171750:intron 35.0%
ACCGATAATTTACTACTCCT+TGG - chr1_4:56474311-56474330 Msa0171750:CDS 35.0%
TAATATGGCAAATGCATGGA+AGG - chr1_4:56474544-56474563 Msa0171750:CDS 35.0%
! CTTTCCTTTTTGCAGGAAAA+AGG - chr1_4:56474665-56474684 Msa0171750:intron 35.0%
TCAAGTAATAGCGAATTGCA+AGG + chr1_4:56474700-56474719 None:intergenic 35.0%
CTATTACTTGATTGCCATTG+AGG - chr1_4:56474709-56474728 Msa0171750:intron 35.0%
TCACAAATGTTAGCTGTGTT+TGG - chr1_4:56474985-56475004 Msa0171750:CDS 35.0%
ATTGGCATCAAACAAACTCA+AGG + chr1_4:56475051-56475070 None:intergenic 35.0%
TGTCATTAACTATGTTCTGC+AGG - chr1_4:56475509-56475528 Msa0171750:intron 35.0%
GTTGATGCTCATAGTAACTT+GGG - chr1_4:56475531-56475550 Msa0171750:intron 35.0%
GGTAATCTAATGAAAGCTCA+AGG - chr1_4:56475552-56475571 Msa0171750:intron 35.0%
ATTTCAGATATGTTGCACTG+TGG + chr1_4:56475733-56475752 None:intergenic 35.0%
! CAGTGCAACATATCTGAAAT+TGG - chr1_4:56475733-56475752 Msa0171750:intron 35.0%
TACAATAATAGTCCCGATCT+TGG - chr1_4:56475910-56475929 Msa0171750:intron 35.0%
GAGCCAAAACACTCTTAATT+TGG - chr1_4:56475951-56475970 Msa0171750:intron 35.0%
!! GACATTGGTGTTTTTCATTC+TGG + chr1_4:56476010-56476029 None:intergenic 35.0%
AAAACACCAATGTCTTCCAT+TGG - chr1_4:56476016-56476035 Msa0171750:intron 35.0%
TCTGTATCGAACTGTGAATT+TGG + chr1_4:56476198-56476217 None:intergenic 35.0%
AAGTTGTTGTCTTCAAAGCA+TGG - chr1_4:56476222-56476241 Msa0171750:intron 35.0%
! CAGAATCTAACATTTTGTGC+AGG - chr1_4:56476299-56476318 Msa0171750:intron 35.0%
ATTTGACCATGCAATAGCAA+AGG + chr1_4:56476364-56476383 None:intergenic 35.0%
AGCATGTGAATATGAAAGTG+AGG + chr1_4:56476449-56476468 None:intergenic 35.0%
TGCTTGAATGAACTTCTGTT+AGG - chr1_4:56476465-56476484 Msa0171750:intron 35.0%
GTGCAATTAGTAACTTCTAC+AGG + chr1_4:56476567-56476586 None:intergenic 35.0%
TTACCTTGTATACATTCCCA+AGG + chr1_4:56476829-56476848 None:intergenic 35.0%
!! AGAATTTTGATCGGCATTGA+TGG - chr1_4:56476881-56476900 Msa0171750:intron 35.0%
!!! TTTTTTTTTCCCCCTTCATC+AGG - chr1_4:56476919-56476938 Msa0171750:CDS 35.0%
TAACATGCAATAGCTTCTTG+AGG + chr1_4:56476956-56476975 None:intergenic 35.0%
TTGGTCTCCAGGATTTATTT+GGG - chr1_4:56477189-56477208 Msa0171750:intron 35.0%
TTAAAGCCCCAAATAAATCC+TGG + chr1_4:56477199-56477218 None:intergenic 35.0%
GCCATTATTAATGTCAACGA+AGG - chr1_4:56477493-56477512 Msa0171750:CDS 35.0%
TATCAATATGCAGCAAAGCA+TGG + chr1_4:56477606-56477625 None:intergenic 35.0%
GCTTTGCTGCATATTGATAA+TGG - chr1_4:56477607-56477626 Msa0171750:intron 35.0%
TAAATTCAGTGCAACTAGCA+TGG + chr1_4:56477764-56477783 None:intergenic 35.0%
ACCTTGCTCATAATGTATAC+TGG + chr1_4:56477819-56477838 None:intergenic 35.0%
TGTAAGCTTCCAAAAATCTG+GGG + chr1_4:56477889-56477908 None:intergenic 35.0%
CTGTTTAGTTGAAAATGCTG+AGG - chr1_4:56477942-56477961 Msa0171750:intron 35.0%
ACCATTAGCATGAAGATAGA+GGG + chr1_4:56478457-56478476 None:intergenic 35.0%
TACCATTAGCATGAAGATAG+AGG + chr1_4:56478458-56478477 None:intergenic 35.0%
ATGCTAATGGTAGTAGTTTG+TGG - chr1_4:56478466-56478485 Msa0171750:intron 35.0%
! TGCTAATGGTAGTAGTTTGT+GGG - chr1_4:56478467-56478486 Msa0171750:intron 35.0%
! TAGTAGTTTGTGGGTTATGT+GGG - chr1_4:56478476-56478495 Msa0171750:intron 35.0%
AGTTATCCTATGTTCTATCG+TGG + chr1_4:56478668-56478687 None:intergenic 35.0%
TAGAACATAGGATAACTGCA+AGG - chr1_4:56478671-56478690 Msa0171750:intron 35.0%
AACTGCAAGGATTATCAACT+TGG - chr1_4:56478684-56478703 Msa0171750:intron 35.0%
TTTCGTTGACAGTATTGTAG+GGG - chr1_4:56478748-56478767 Msa0171750:intron 35.0%
GGCAATACTTATAAGGAGAT+TGG - chr1_4:56478889-56478908 Msa0171750:intron 35.0%
! TAATTTGGCTTCTGCCTATA+AGG - chr1_4:56478984-56479003 Msa0171750:intron 35.0%
! TGGATCTTCTGACATCTTTT+GGG - chr1_4:56479138-56479157 Msa0171750:intron 35.0%
GAAACCTAAAACTTCTGATG+TGG + chr1_4:56479181-56479200 None:intergenic 35.0%
ATCACCAACATATGTTGCAA+GGG + chr1_4:56479239-56479258 None:intergenic 35.0%
AATCACCAACATATGTTGCA+AGG + chr1_4:56479240-56479259 None:intergenic 35.0%
TTATTTCAGTGGACATGTAG+AGG - chr1_4:56479325-56479344 Msa0171750:intron 35.0%
CAATCTTCTACATACACTTC+AGG - chr1_4:56479409-56479428 Msa0171750:intron 35.0%
GACAACAGAGGTTTCTAATA+AGG + chr1_4:56479608-56479627 None:intergenic 35.0%
AGAAGAAGCAAAGTGAAAGA+AGG - chr1_4:56479869-56479888 Msa0171750:CDS 35.0%
TTCATGTTTGAAGGAGATCT+AGG - chr1_4:56479923-56479942 Msa0171750:CDS 35.0%
TCATGTTTGAAGGAGATCTA+GGG - chr1_4:56479924-56479943 Msa0171750:CDS 35.0%
AGTCCACTATACTACAAATC+TGG + chr1_4:56480006-56480025 None:intergenic 35.0%
CAAGAATGAACCAGTGATTA+AGG + chr1_4:56480539-56480558 None:intergenic 35.0%
!! CTTAATCACTGGTTCATTCT+TGG - chr1_4:56480537-56480556 Msa0171750:intron 35.0%
TATGAAAGTGGTCGTTGTAT+TGG - chr1_4:56480579-56480598 Msa0171750:CDS 35.0%
ATGAAAGTGGTCGTTGTATT+GGG - chr1_4:56480580-56480599 Msa0171750:CDS 35.0%
! CTCTCCTATCATCTTGATTT+TGG - chr1_4:56480673-56480692 Msa0171750:intron 35.0%
!! GGATAATGGAGTGATAACAA+AGG + chr1_4:56480820-56480839 None:intergenic 35.0%
CAAATGTTCAAGGAAGTAGA+AGG - chr1_4:56480946-56480965 Msa0171750:intron 35.0%
TAATTTCCAGAGCAAGCATT+GGG + chr1_4:56481159-56481178 None:intergenic 35.0%
GGTTATGAAAGACTAAGGAT+TGG - chr1_4:56481373-56481392 Msa0171750:intron 35.0%
TTACATATCTCTCACAAGGA+GGG + chr1_4:56481437-56481456 None:intergenic 35.0%
TATGCACAACAGAAAGAATG+TGG - chr1_4:56481552-56481571 Msa0171750:intron 35.0%
!! GAATGTGGAGGTATTTAACT+TGG - chr1_4:56481567-56481586 Msa0171750:intron 35.0%
TGCTATCGTATCTGATATCA+TGG + chr1_4:56481753-56481772 None:intergenic 35.0%
GATAGCAAAATTGATCAACG+AGG - chr1_4:56481766-56481785 Msa0171750:intron 35.0%
TTTAGTACTTTGATCCGTGA+AGG - chr1_4:56481984-56482003 Msa0171750:intron 35.0%
TTAGTACTTTGATCCGTGAA+GGG - chr1_4:56481985-56482004 Msa0171750:intron 35.0%
TAAACCTTCCTTATCCTTAC+TGG + chr1_4:56482340-56482359 None:intergenic 35.0%
ATAAGGAAGGTTTAGAAGAG+AGG - chr1_4:56482346-56482365 Msa0171750:intron 35.0%
TAAGGAAGGTTTAGAAGAGA+GGG - chr1_4:56482347-56482366 Msa0171750:intron 35.0%
!!! GTGCTTTTTTGGATATACGT+AGG - chr1_4:56482426-56482445 Msa0171750:intron 35.0%
! AAGTTTTTCTTGCATGCCAA+TGG - chr1_4:56482451-56482470 Msa0171750:intron 35.0%
ATAATATGGAGACTTGCCAT+TGG + chr1_4:56482470-56482489 None:intergenic 35.0%
!!! ACATGAGCTTGTTTTCAAGT+TGG + chr1_4:56482546-56482565 None:intergenic 35.0%
GCTAAGCATGATTAAATGTG+AGG + chr1_4:56482633-56482652 None:intergenic 35.0%
AAAACTTTCACCCACTAAGT+AGG + chr1_4:56482819-56482838 None:intergenic 35.0%
!! GTAAAGGCTTTGAATTGTGT+AGG - chr1_4:56482912-56482931 Msa0171750:CDS 35.0%
!!! GTGCAATTGTCCTTTTTTCA+GGG - chr1_4:56482971-56482990 Msa0171750:intron 35.0%
ATTTCTTGCACCCTGAAAAA+AGG + chr1_4:56482984-56483003 None:intergenic 35.0%
CCCATATATGAAACTTGAAC+TGG + chr1_4:56483031-56483050 None:intergenic 35.0%
GTTTCATATATGGGATTTCC+TGG - chr1_4:56483037-56483056 Msa0171750:intron 35.0%
GTAATCTATGTATGTAGCTC+CGG + chr1_4:56483068-56483087 None:intergenic 35.0%
AATGAGTTAATAAGATGGCC+TGG + chr1_4:56483126-56483145 None:intergenic 35.0%
TAGATATGTGCATACTGAAG+AGG + chr1_4:56483202-56483221 None:intergenic 35.0%
TCGTTTACAAAGTAGCAATG+CGG + chr1_4:56483247-56483266 None:intergenic 35.0%
!! CAGGTTTGTTGTTATGAACT+TGG - chr1_4:56483274-56483293 Msa0171750:intron 35.0%
CTGAATAAACAAGTTACCCA+GGG + chr1_4:56483362-56483381 None:intergenic 35.0%
TCTGAATAAACAAGTTACCC+AGG + chr1_4:56483363-56483382 None:intergenic 35.0%
AGACCATAATCTGATCGTTT+GGG + chr1_4:56483418-56483437 None:intergenic 35.0%
CAGACATGTAAAGGATGATA+TGG + chr1_4:56483580-56483599 None:intergenic 35.0%
!! CGTGTGTTTTTGCAATGTTT+GGG - chr1_4:56483760-56483779 Msa0171750:CDS 35.0%
!!! AGTGGTTTTGACATGGATAA+TGG + chr1_4:56483813-56483832 None:intergenic 35.0%
ATTATCCATGTCAAAACCAC+TGG - chr1_4:56483812-56483831 Msa0171750:intron 35.0%
TTATCCATGTCAAAACCACT+GGG - chr1_4:56483813-56483832 Msa0171750:intron 35.0%
AGGAAAATAAAATCTCCCAG+TGG + chr1_4:56483831-56483850 None:intergenic 35.0%
TTCACAGATGTTGCAATGAA+GGG - chr1_4:56483950-56483969 Msa0171750:CDS 35.0%
CCATAATATATCTGTTCCTG+TGG + chr1_4:56484147-56484166 None:intergenic 35.0%
CCACAGGAACAGATATATTA+TGG - chr1_4:56484144-56484163 Msa0171750:CDS 35.0%
TCTTGAGAAAATGGCTACTA+GGG - chr1_4:56484193-56484212 Msa0171750:CDS 35.0%
TTCAACTTACAAGGGAGATT+AGG + chr1_4:56484346-56484365 None:intergenic 35.0%
TTGAGGTTAAGTAACTGTGT+AGG + chr1_4:56484589-56484608 None:intergenic 35.0%
TAGGAATACCGTATTAGAGA+CGG - chr1_4:56484749-56484768 Msa0171750:five_prime_UTR 35.0%
! TCAAAATTGGGTTGCGTATT+TGG - chr1_4:56484871-56484890 Msa0171750:five_prime_UTR 35.0%
CGTATTTGGTTACAGTTGTT+GGG - chr1_4:56484885-56484904 Msa0171750:five_prime_UTR 35.0%
CAGGAATGACTATTTAACAC+AGG + chr1_4:56485000-56485019 None:intergenic 35.0%
!! TTTTGGAAGATGTCTATGGG+AGG + chr1_4:56473583-56473602 None:intergenic 40.0%
CTAGAATCATGAGCGTGTAA+AGG + chr1_4:56473921-56473940 None:intergenic 40.0%
! GCGCCAATTATACTTGGTTT+TGG - chr1_4:56474017-56474036 Msa0171750:CDS 40.0%
GCACATCAAATGTACAAGAG+TGG - chr1_4:56474230-56474249 Msa0171750:CDS 40.0%
AGTAAATTATCGGTGCGAAG+CGG + chr1_4:56474305-56474324 None:intergenic 40.0%
CCTGGTAATAAATTGCACCA+AGG + chr1_4:56474331-56474350 None:intergenic 40.0%
! CCTTGGTGCAATTTATTACC+AGG - chr1_4:56474328-56474347 Msa0171750:CDS 40.0%
!!! TTGTTTTTGCGTGAATTGCG+TGG - chr1_4:56474425-56474444 Msa0171750:intron 40.0%
!! GCATGATTTTGATATGTGCG+TGG - chr1_4:56474469-56474488 Msa0171750:CDS 40.0%
TGCCATATTACCGTAACACT+CGG + chr1_4:56474534-56474553 None:intergenic 40.0%
ACGGTAATATGGCAAATGCA+TGG - chr1_4:56474540-56474559 Msa0171750:CDS 40.0%
CTAATGTGCCACAACTTTGT+TGG - chr1_4:56474580-56474599 Msa0171750:intron 40.0%
! GTTGCCTTTTTCCTGCAAAA+AGG + chr1_4:56474672-56474691 None:intergenic 40.0%
! CGTGAACTTACATGTTGCTT+TGG - chr1_4:56474776-56474795 Msa0171750:CDS 40.0%
ACACACAAACTGGATTCTGT+TGG - chr1_4:56474912-56474931 Msa0171750:intron 40.0%
ATTGTTGCTGTCGGTAGTAA+TGG - chr1_4:56474958-56474977 Msa0171750:intron 40.0%
AACTCAAGGTGAGGCTTATA+TGG + chr1_4:56475037-56475056 None:intergenic 40.0%
CATCAAACAAACTCAAGGTG+AGG + chr1_4:56475046-56475065 None:intergenic 40.0%
GACCATGCATCAGCAAAATT+GGG + chr1_4:56475257-56475276 None:intergenic 40.0%
TGACCATGCATCAGCAAAAT+TGG + chr1_4:56475258-56475277 None:intergenic 40.0%
!! ACTTGCTATCAACCCTCTAA+TGG - chr1_4:56475343-56475362 Msa0171750:intron 40.0%
! GGTTGATGCTCATAGTAACT+TGG - chr1_4:56475530-56475549 Msa0171750:intron 40.0%
TCTAATGAAAGCTCAAGGGT+TGG - chr1_4:56475557-56475576 Msa0171750:intron 40.0%
TCAATGCAGTTCACCAAGAT+CGG + chr1_4:56475926-56475945 None:intergenic 40.0%
! TTGGTGAACTGCATTGATGT+TGG - chr1_4:56475929-56475948 Msa0171750:intron 40.0%
GTATGACCAATGGAAGACAT+TGG + chr1_4:56476025-56476044 None:intergenic 40.0%
!!! AGCACATGGCCATTTTTATC+AGG + chr1_4:56476064-56476083 None:intergenic 40.0%
TGATAAAAATGGCCATGTGC+TGG - chr1_4:56476063-56476082 Msa0171750:intron 40.0%
ACTATTTGCAGTCTTGCAGA+TGG + chr1_4:56476279-56476298 None:intergenic 40.0%
!! AACCTACCTTTGCTATTGCA+TGG - chr1_4:56476355-56476374 Msa0171750:intron 40.0%
ATTGCATGGTCAAATCTTGC+TGG - chr1_4:56476369-56476388 Msa0171750:intron 40.0%
! AAATCTTGCTGGTCTGTTCA+TGG - chr1_4:56476380-56476399 Msa0171750:intron 40.0%
CGGACGGTCTGATTTATAAA+AGG + chr1_4:56476493-56476512 None:intergenic 40.0%
CAAGGTTCAAGTATGCATCA+GGG + chr1_4:56476811-56476830 None:intergenic 40.0%
CTGATGCATACTTGAACCTT+GGG - chr1_4:56476810-56476829 Msa0171750:intron 40.0%
GAACCTTGGGAATGTATACA+AGG - chr1_4:56476823-56476842 Msa0171750:intron 40.0%
ATCAACATGCTCTTCAGACA+CGG - chr1_4:56476975-56476994 Msa0171750:intron 40.0%
TAAACACTGATCGATGACCT+TGG - chr1_4:56477170-56477189 Msa0171750:CDS 40.0%
CAAATAAATCCTGGAGACCA+AGG + chr1_4:56477190-56477209 None:intergenic 40.0%
CTTGGTCTCCAGGATTTATT+TGG - chr1_4:56477188-56477207 Msa0171750:intron 40.0%
TGGTCTCCAGGATTTATTTG+GGG - chr1_4:56477190-56477209 Msa0171750:intron 40.0%
!! ATAGTTATGTTGGCTCCTCA+TGG - chr1_4:56477522-56477541 Msa0171750:CDS 40.0%
ATTGCATAAAGGAAGCCATG+AGG + chr1_4:56477540-56477559 None:intergenic 40.0%
GTTTACTAAATTGCAAGCCG+TGG + chr1_4:56477736-56477755 None:intergenic 40.0%
GCCAGTATACATTATGAGCA+AGG - chr1_4:56477815-56477834 Msa0171750:intron 40.0%
ACATTATGAGCAAGGTCAAC+TGG - chr1_4:56477823-56477842 Msa0171750:intron 40.0%
! AAATGCTGAGGGTTTCGTTT+TGG - chr1_4:56477954-56477973 Msa0171750:intron 40.0%
TGAAACCCAGAAACAACACT+CGG - chr1_4:56478130-56478149 Msa0171750:intron 40.0%
!! TGTTTCCGAGTGTTGTTTCT+GGG + chr1_4:56478138-56478157 None:intergenic 40.0%
!! TTGTTTCCGAGTGTTGTTTC+TGG + chr1_4:56478139-56478158 None:intergenic 40.0%
! AAAATAGCACGTTTAGGGTC+TGG + chr1_4:56478165-56478184 None:intergenic 40.0%
!! GGTAATGCTCTGAAAGATGT+TGG - chr1_4:56478226-56478245 Msa0171750:intron 40.0%
TCCCTCTATCTTCATGCTAA+TGG - chr1_4:56478453-56478472 Msa0171750:intron 40.0%
! GTAGTAGTTTGTGGGTTATG+TGG - chr1_4:56478475-56478494 Msa0171750:intron 40.0%
TTGTTAATGCAGGAACATGG+TGG - chr1_4:56478518-56478537 Msa0171750:intron 40.0%
GCTACACTAAATGTAACCAC+TGG - chr1_4:56478564-56478583 Msa0171750:intron 40.0%
TGCCATATCTTGCTACAATG+AGG - chr1_4:56478822-56478841 Msa0171750:intron 40.0%
GACCTCATTGTAGCAAGATA+TGG + chr1_4:56478827-56478846 None:intergenic 40.0%
TAATCGCACGTATGTAATCC+TGG + chr1_4:56478933-56478952 None:intergenic 40.0%
!! GTTTCAATGTTGGAGGCATT+GGG + chr1_4:56479034-56479053 None:intergenic 40.0%
! AGTTTCAATGTTGGAGGCAT+TGG + chr1_4:56479035-56479054 None:intergenic 40.0%
TGCTTCAGTTTCAATGTTGG+AGG + chr1_4:56479041-56479060 None:intergenic 40.0%
CAAAAGATGTCAGAAGATCC+AGG + chr1_4:56479139-56479158 None:intergenic 40.0%
! CTGGATCTTCTGACATCTTT+TGG - chr1_4:56479137-56479156 Msa0171750:intron 40.0%
! GGATCTTCTGACATCTTTTG+GGG - chr1_4:56479139-56479158 Msa0171750:intron 40.0%
! GTGTCCACATCAGAAGTTTT+AGG - chr1_4:56479174-56479193 Msa0171750:intron 40.0%
CTAGACATCATAACGTTGAC+AGG + chr1_4:56479264-56479283 None:intergenic 40.0%
AGAAGATTGCAAGTTGCTTC+AGG + chr1_4:56479398-56479417 None:intergenic 40.0%
GAAACCTCTGTTGTCAAAAG+CGG - chr1_4:56479613-56479632 Msa0171750:CDS 40.0%
CTTCTCTTTGACCGTGAAAA+AGG + chr1_4:56479790-56479809 None:intergenic 40.0%
!! CTTTTTCACGGTCAAAGAGA+AGG - chr1_4:56479788-56479807 Msa0171750:intron 40.0%
AAGTGAAAGAAGGTCGTTGT+TGG - chr1_4:56479879-56479898 Msa0171750:CDS 40.0%
! GTCGTTGTTGGTTGTTTATG+TGG - chr1_4:56479891-56479910 Msa0171750:CDS 40.0%
!!! ACCATTTTGATTGGCCTGAA+GGG + chr1_4:56479976-56479995 None:intergenic 40.0%
!!! TACCATTTTGATTGGCCTGA+AGG + chr1_4:56479977-56479996 None:intergenic 40.0%
ATTGGGCAATTCGCTTGAAA+TGG - chr1_4:56480597-56480616 Msa0171750:CDS 40.0%
GCAATTCGCTTGAAATGGAA+TGG - chr1_4:56480602-56480621 Msa0171750:CDS 40.0%
GAGTATCATGTAGTCCAATC+AGG + chr1_4:56480656-56480675 None:intergenic 40.0%
ATTAGACGCAACGAACTTGT+GGG + chr1_4:56480842-56480861 None:intergenic 40.0%
TAATGCAGTGTGTCTGTTGT+TGG - chr1_4:56480911-56480930 Msa0171750:intron 40.0%
AATGCAGTGTGTCTGTTGTT+GGG - chr1_4:56480912-56480931 Msa0171750:intron 40.0%
GGATCGTGATCAAATGTTCA+AGG - chr1_4:56480936-56480955 Msa0171750:intron 40.0%
CTAATTTCCAGAGCAAGCAT+TGG + chr1_4:56481160-56481179 None:intergenic 40.0%
!! CAATGCTTGCTCTGGAAATT+AGG - chr1_4:56481158-56481177 Msa0171750:intron 40.0%
AGGGAGGTTATGAAAGACTA+AGG - chr1_4:56481368-56481387 Msa0171750:intron 40.0%
GTTACATATCTCTCACAAGG+AGG + chr1_4:56481438-56481457 None:intergenic 40.0%
!! ATGGGAAATTTTTGGACTGC+AGG - chr1_4:56481470-56481489 Msa0171750:CDS 40.0%
AGGTATGTGAGTAGTGACTT+TGG - chr1_4:56481490-56481509 Msa0171750:CDS 40.0%
ATCCCATGAGATGTGACAAT+GGG + chr1_4:56481522-56481541 None:intergenic 40.0%
! CATCTCATGGGATCTGTTTT+CGG - chr1_4:56481529-56481548 Msa0171750:intron 40.0%
TATGCCTTGAGTCCAAATGA+TGG - chr1_4:56481671-56481690 Msa0171750:CDS 40.0%
AGTACCATCATTTGGACTCA+AGG + chr1_4:56481678-56481697 None:intergenic 40.0%
! GTCCAAATGATGGTACTGAA+TGG - chr1_4:56481681-56481700 Msa0171750:intron 40.0%
CTCCATTCAGTACCATCATT+TGG + chr1_4:56481686-56481705 None:intergenic 40.0%
TCCATTTCACATACCCTTCA+CGG + chr1_4:56482001-56482020 None:intergenic 40.0%
CTATATAAATTCACCAGGCC+AGG + chr1_4:56482875-56482894 None:intergenic 40.0%
!!! GGTGCAATTGTCCTTTTTTC+AGG - chr1_4:56482970-56482989 Msa0171750:intron 40.0%
TATGAAACTTGAACTGGTGC+AGG + chr1_4:56483025-56483044 None:intergenic 40.0%
AGATTACTTGGTCACTGATG+AGG - chr1_4:56483081-56483100 Msa0171750:intron 40.0%
CGTTTACAAAGTAGCAATGC+GGG + chr1_4:56483246-56483265 None:intergenic 40.0%
GAGACCATAATCTGATCGTT+TGG + chr1_4:56483419-56483438 None:intergenic 40.0%
!! GCGTGTGTTTTTGCAATGTT+TGG - chr1_4:56483759-56483778 Msa0171750:CDS 40.0%
CTTCACAGATGTTGCAATGA+AGG - chr1_4:56483949-56483968 Msa0171750:CDS 40.0%
TGAAGGGTGAACACATTAGA+CGG - chr1_4:56483966-56483985 Msa0171750:CDS 40.0%
GTCAAGAAATAAGTCTGCCA+AGG + chr1_4:56483996-56484015 None:intergenic 40.0%
GTGGTATGTGCATTGCATAA+AGG + chr1_4:56484128-56484147 None:intergenic 40.0%
TTATGCAATGCACATACCAC+AGG - chr1_4:56484128-56484147 Msa0171750:CDS 40.0%
GGAACAGATATATTATGGGC+AGG - chr1_4:56484149-56484168 Msa0171750:CDS 40.0%
TACTCTGCCTCTTGAGAAAA+TGG - chr1_4:56484184-56484203 Msa0171750:CDS 40.0%
!! CTAGTAGCCATTTTCTCAAG+AGG + chr1_4:56484194-56484213 None:intergenic 40.0%
CTCTTGAGAAAATGGCTACT+AGG - chr1_4:56484192-56484211 Msa0171750:CDS 40.0%
CAGTTAGAGCTTGAAGCTTT+GGG + chr1_4:56484471-56484490 None:intergenic 40.0%
TCAGTTAGAGCTTGAAGCTT+TGG + chr1_4:56484472-56484491 None:intergenic 40.0%
TCTCTTTGACACAAACCGAT+GGG - chr1_4:56484522-56484541 Msa0171750:intron 40.0%
TCAGTGACCTTAAAATGCTG+TGG + chr1_4:56484695-56484714 None:intergenic 40.0%
AGGAATACCGTATTAGAGAC+GGG - chr1_4:56484750-56484769 Msa0171750:five_prime_UTR 40.0%
CTACATTCCCGTCTCTAATA+CGG + chr1_4:56484760-56484779 None:intergenic 40.0%
GCGTATTTGGTTACAGTTGT+TGG - chr1_4:56484884-56484903 Msa0171750:five_prime_UTR 40.0%
!! TCTTGGTTCGGAAGAGATCT+GGG + chr1_4:56473482-56473501 None:intergenic 45.0%
!! ATCTTGGTTCGGAAGAGATC+TGG + chr1_4:56473483-56473502 None:intergenic 45.0%
GGGAGATGAGAATCTTGGTT+CGG + chr1_4:56473494-56473513 None:intergenic 45.0%
AAGAAAACGCGAACTCGAGA+AGG + chr1_4:56473532-56473551 None:intergenic 45.0%
ATGATTCCGGTGAACAGAGA+CGG + chr1_4:56473750-56473769 None:intergenic 45.0%
CACGCTCATGATTCTAGTGA+AGG - chr1_4:56473924-56473943 Msa0171750:intron 45.0%
TCACACGCGCCAATTATACT+TGG - chr1_4:56474011-56474030 Msa0171750:CDS 45.0%
TGCCGAGTGTTACGGTAATA+TGG - chr1_4:56474529-56474548 Msa0171750:CDS 45.0%
ATGGCAAATGCATGGAAGGT+AGG - chr1_4:56474548-56474567 Msa0171750:intron 45.0%
CAACACGTCCAACAAAGTTG+TGG + chr1_4:56474591-56474610 None:intergenic 45.0%
TTGCTGTCGGTAGTAATGGT+AGG - chr1_4:56474962-56474981 Msa0171750:intron 45.0%
! GTCCCAATTTTGCTGATGCA+TGG - chr1_4:56475252-56475271 Msa0171750:CDS 45.0%
TACGCATGTATGCACTAGCT+AGG + chr1_4:56475283-56475302 None:intergenic 45.0%
GCTAGTGCATACATGCGTAA+AGG - chr1_4:56475284-56475303 Msa0171750:intron 45.0%
TATGTTGCACTGTGGCAGAA+AGG + chr1_4:56475725-56475744 None:intergenic 45.0%
ACTGTGCAGCATAGAGAAAC+TGG + chr1_4:56475793-56475812 None:intergenic 45.0%
! ATGCTGCACAGTTTGAGATG+AGG - chr1_4:56475801-56475820 Msa0171750:intron 45.0%
! AGTTTGAGATGAGGCTCTAC+TGG - chr1_4:56475810-56475829 Msa0171750:intron 45.0%
TACTGGATTCCCAGTATGAG+CGG - chr1_4:56475827-56475846 Msa0171750:intron 45.0%
CAATGCAGTTCACCAAGATC+GGG + chr1_4:56475925-56475944 None:intergenic 45.0%
AGCAGAGAGATGTCTCAAAC+TGG + chr1_4:56475980-56475999 None:intergenic 45.0%
! AGTTTGAGACATCTCTCTGC+TGG - chr1_4:56475979-56475998 Msa0171750:intron 45.0%
! GTTTGAGACATCTCTCTGCT+GGG - chr1_4:56475980-56475999 Msa0171750:intron 45.0%
!! AAGTATTGAAGGAACCCTCC+AGG + chr1_4:56476097-56476116 None:intergenic 45.0%
CAAAGCATGGACTCAGATGA+TGG - chr1_4:56476235-56476254 Msa0171750:intron 45.0%
GACCATGCAATAGCAAAGGT+AGG + chr1_4:56476360-56476379 None:intergenic 45.0%
GCAGACCTTGTAATACTGCA+GGG + chr1_4:56476427-56476446 None:intergenic 45.0%
AAGTATGCATCAGGGAAGGA+AGG + chr1_4:56476803-56476822 None:intergenic 45.0%
GTTCAAGTATGCATCAGGGA+AGG + chr1_4:56476807-56476826 None:intergenic 45.0%
CCAAGGTTCAAGTATGCATC+AGG + chr1_4:56476812-56476831 None:intergenic 45.0%
CCTGATGCATACTTGAACCT+TGG - chr1_4:56476809-56476828 Msa0171750:intron 45.0%
!! GGCATTGATGGATCCTTGAA+AGG - chr1_4:56476893-56476912 Msa0171750:intron 45.0%
ATCCCTAAAGCCTGATGAAG+GGG + chr1_4:56476932-56476951 None:intergenic 45.0%
CATCCCTAAAGCCTGATGAA+GGG + chr1_4:56476933-56476952 None:intergenic 45.0%
CCATAAGCCATGCCATAGTT+TGG + chr1_4:56477001-56477020 None:intergenic 45.0%
CCAAACTATGGCATGGCTTA+TGG - chr1_4:56476998-56477017 Msa0171750:intron 45.0%
! TGCATGTGACCCCAGATTTT+TGG - chr1_4:56477877-56477896 Msa0171750:intron 45.0%
TCTGAAAGATGTTGGCAGAG+TGG - chr1_4:56478234-56478253 Msa0171750:intron 45.0%
! CAAGATTGGTCAACGCTTGT+GGG + chr1_4:56478406-56478425 None:intergenic 45.0%
ATACGGTGCAGATAATCCAG+TGG + chr1_4:56478583-56478602 None:intergenic 45.0%
!! GCTGATGGTCTTGTAAACAG+AGG - chr1_4:56478868-56478887 Msa0171750:intron 45.0%
TAGAGTCAGTGATGCTATCC+AGG - chr1_4:56478912-56478931 Msa0171750:intron 45.0%
GGCTGAAGCTCATGCTAATT+TGG - chr1_4:56478969-56478988 Msa0171750:intron 45.0%
TGGCTTCTGCCTATAAGGAT+AGG - chr1_4:56478989-56479008 Msa0171750:intron 45.0%
ACATATGTTGCAAGGGCGAT+GGG + chr1_4:56479232-56479251 None:intergenic 45.0%
AACATATGTTGCAAGGGCGA+TGG + chr1_4:56479233-56479252 None:intergenic 45.0%
ATCGCCCTTGCAACATATGT+TGG - chr1_4:56479232-56479251 Msa0171750:intron 45.0%
TTTCAGTGGACATGTAGAGG+CGG - chr1_4:56479328-56479347 Msa0171750:intron 45.0%
GACCGTGAAAAAGGTTGAAG+CGG + chr1_4:56479781-56479800 None:intergenic 45.0%
CTGCAGTGCTTCATGTTTGA+AGG - chr1_4:56479914-56479933 Msa0171750:CDS 45.0%
AAGACTTATTTGGGCCCTTC+AGG - chr1_4:56479959-56479978 Msa0171750:intron 45.0%
GTAGTGAATGCAGAATTGCG+CGG + chr1_4:56480492-56480511 None:intergenic 45.0%
TGCTGTCTGTTTGACCTGAT+TGG - chr1_4:56480639-56480658 Msa0171750:CDS 45.0%
CAACGAACTTGTGGGGATAA+TGG + chr1_4:56480834-56480853 None:intergenic 45.0%
TTAGACGCAACGAACTTGTG+GGG + chr1_4:56480841-56480860 None:intergenic 45.0%
CATTAGACGCAACGAACTTG+TGG + chr1_4:56480843-56480862 None:intergenic 45.0%
GGATATGCTATGGCATGGAA+AGG + chr1_4:56481130-56481149 None:intergenic 45.0%
CAAGTGGATATGCTATGGCA+TGG + chr1_4:56481135-56481154 None:intergenic 45.0%
TGGGTCAAGTGGATATGCTA+TGG + chr1_4:56481140-56481159 None:intergenic 45.0%
AGCAGTGTGCAGCATATTTG+CGG + chr1_4:56481282-56481301 None:intergenic 45.0%
ATAGGAGCAGGATGGCTAAA+TGG + chr1_4:56481334-56481353 None:intergenic 45.0%
TGATTGGAATAGGAGCAGGA+TGG + chr1_4:56481342-56481361 None:intergenic 45.0%
TGCTTGATTGGAATAGGAGC+AGG + chr1_4:56481346-56481365 None:intergenic 45.0%
TGCTCCTATTCCAATCAAGC+AGG - chr1_4:56481345-56481364 Msa0171750:intron 45.0%
TCCTATTCCAATCAAGCAGG+AGG - chr1_4:56481348-56481367 Msa0171750:intron 45.0%
CCTATTCCAATCAAGCAGGA+GGG - chr1_4:56481349-56481368 Msa0171750:intron 45.0%
CACCCATTGTCACATCTCAT+GGG - chr1_4:56481517-56481536 Msa0171750:intron 45.0%
GATCCCATGAGATGTGACAA+TGG + chr1_4:56481523-56481542 None:intergenic 45.0%
GCACAACAGAAAGAATGTGG+AGG - chr1_4:56481555-56481574 Msa0171750:intron 45.0%
! ATCTGAAGCAGAGCACTTTG+TGG - chr1_4:56481718-56481737 Msa0171750:intron 45.0%
! TCCGTGAAGGGTATGTGAAA+TGG - chr1_4:56481997-56482016 Msa0171750:intron 45.0%
! GTGAAGGGTATGTGAAATGG+AGG - chr1_4:56482000-56482019 Msa0171750:intron 45.0%
GTGGTCACACAAAACAAGAC+AGG - chr1_4:56482195-56482214 Msa0171750:intron 45.0%
!! TGGTATGGCTTTGTCTCATG+TGG - chr1_4:56482278-56482297 Msa0171750:intron 45.0%
TGTGGTTTGAGTGTCTACTC+TGG - chr1_4:56482296-56482315 Msa0171750:intron 45.0%
TCATAGAAGCAGCACCAGTA+AGG - chr1_4:56482323-56482342 Msa0171750:intron 45.0%
AAGCAGCACCAGTAAGGATA+AGG - chr1_4:56482329-56482348 Msa0171750:intron 45.0%
AGCACCAGTAAGGATAAGGA+AGG - chr1_4:56482333-56482352 Msa0171750:intron 45.0%
TGGACGCCCTCTTAACTAAT+GGG + chr1_4:56482380-56482399 None:intergenic 45.0%
TTGGACGCCCTCTTAACTAA+TGG + chr1_4:56482381-56482400 None:intergenic 45.0%
GTTACAGACTGGCATTGTGA+AGG - chr1_4:56482499-56482518 Msa0171750:intron 45.0%
ACTGATGAGGTTAGCAGTAC+TGG - chr1_4:56483094-56483113 Msa0171750:intron 45.0%
CTGATGAGGTTAGCAGTACT+GGG - chr1_4:56483095-56483114 Msa0171750:intron 45.0%
CAGCCCAAACGATCAGATTA+TGG - chr1_4:56483412-56483431 Msa0171750:intron 45.0%
CTCTTGAAATTTCCTGCAGC+AGG - chr1_4:56483661-56483680 Msa0171750:intron 45.0%
AGCAGGAGAAATGAGACTGA+GGG - chr1_4:56483678-56483697 Msa0171750:intron 45.0%
!!! ATCTCCCAGTGGTTTTGACA+TGG + chr1_4:56483820-56483839 None:intergenic 45.0%
TTTCAGATGCTGCTGCACAA+GGG - chr1_4:56483906-56483925 Msa0171750:intron 45.0%
ACACATTAGACGGAGTTCCT+TGG - chr1_4:56483976-56483995 Msa0171750:CDS 45.0%
TCAAGAGGCAGAGTAACCAT+AGG + chr1_4:56484179-56484198 None:intergenic 45.0%
AAAATGGCTACTAGGGTTGC+TGG - chr1_4:56484200-56484219 Msa0171750:CDS 45.0%
ACTCTGTATTTCCACTGGAC+TGG - chr1_4:56484226-56484245 Msa0171750:CDS 45.0%
CTCTGTATTTCCACTGGACT+GGG - chr1_4:56484227-56484246 Msa0171750:CDS 45.0%
TCTGTATTTCCACTGGACTG+GGG - chr1_4:56484228-56484247 Msa0171750:CDS 45.0%
GTTTGTGTCAAAGAGAGGAC+AGG + chr1_4:56484518-56484537 None:intergenic 45.0%
!! CATCGGTTTGTGTCAAAGAG+AGG + chr1_4:56484523-56484542 None:intergenic 45.0%
CTCTCTTTGACACAAACCGA+TGG - chr1_4:56484521-56484540 Msa0171750:intron 45.0%
ATGTGGAATCTGCATTGCTC+TGG - chr1_4:56484662-56484681 Msa0171750:CDS 45.0%
ATCTGCATTGCTCTGGTCAA+CGG - chr1_4:56484669-56484688 Msa0171750:CDS 45.0%
! TCAACGGCCACAGCATTTTA+AGG - chr1_4:56484685-56484704 Msa0171750:CDS 45.0%
!! TTGCTTTTGGTCTGTGCCTT+CGG - chr1_4:56484972-56484991 Msa0171750:five_prime_UTR 45.0%
CTATTTAACACAGGCTCCGA+AGG + chr1_4:56484991-56485010 None:intergenic 45.0%
!! ATTAATAAAAAAAAAAATAC+TGG + chr1_4:56477705-56477724 None:intergenic 5.0%
!! AAAAAATACATTATTAATTA+AGG + chr1_4:56480394-56480413 None:intergenic 5.0%
GAAAGGAATTGGATCGGGAG+AGG + chr1_4:56473676-56473695 None:intergenic 50.0%
ACGGAGAAGGAACGAAGGAT+CGG + chr1_4:56473731-56473750 None:intergenic 50.0%
CTGGACGGAGATCATGATTC+CGG + chr1_4:56473763-56473782 None:intergenic 50.0%
GGAATCATGATCTCCGTCCA+GGG - chr1_4:56473762-56473781 Msa0171750:CDS 50.0%
ATGAGCCAACAAGCTGAGAG+TGG + chr1_4:56473815-56473834 None:intergenic 50.0%
GTCTCTTGCTTAACGGCGAA+CGG + chr1_4:56473879-56473898 None:intergenic 50.0%
CGACGACGTCTCTTGCTTAA+CGG + chr1_4:56473886-56473905 None:intergenic 50.0%
CTCGAGATCGATGCTTCTTG+TGG - chr1_4:56473979-56473998 Msa0171750:CDS 50.0%
CCACACTTTGCCGAGTGTTA+CGG - chr1_4:56474521-56474540 Msa0171750:CDS 50.0%
ACTGGCTATAGAGCAGGTTG+GGG + chr1_4:56475770-56475789 None:intergenic 50.0%
! GACTGGCTATAGAGCAGGTT+GGG + chr1_4:56475771-56475790 None:intergenic 50.0%
!! AACTGGACTGGCTATAGAGC+AGG + chr1_4:56475776-56475795 None:intergenic 50.0%
GCAGCATAGAGAAACTGGAC+TGG + chr1_4:56475788-56475807 None:intergenic 50.0%
!! GGTAGAGTACCGCTCATACT+GGG + chr1_4:56475839-56475858 None:intergenic 50.0%
!! AGGTAGAGTACCGCTCATAC+TGG + chr1_4:56475840-56475859 None:intergenic 50.0%
TGGGAGACGAGTATGACCAA+TGG + chr1_4:56476035-56476054 None:intergenic 50.0%
! GCATGGACTCAGATGATGGT+TGG - chr1_4:56476239-56476258 Msa0171750:intron 50.0%
GGCATACAGTTGTTACCTCG+AGG - chr1_4:56476320-56476339 Msa0171750:intron 50.0%
GTTGTATACGCAATGCCTCG+AGG + chr1_4:56476338-56476357 None:intergenic 50.0%
CAGAGCCCTGCAGTATTACA+AGG - chr1_4:56476419-56476438 Msa0171750:intron 50.0%
GGCAGACCTTGTAATACTGC+AGG + chr1_4:56476428-56476447 None:intergenic 50.0%
TTCCCCCTTCATCAGGCTTT+AGG - chr1_4:56476926-56476945 Msa0171750:CDS 50.0%
TCCCCCTTCATCAGGCTTTA+GGG - chr1_4:56476927-56476946 Msa0171750:CDS 50.0%
TCCCTAAAGCCTGATGAAGG+GGG + chr1_4:56476931-56476950 None:intergenic 50.0%
GCATCCCTAAAGCCTGATGA+AGG + chr1_4:56476934-56476953 None:intergenic 50.0%
CTTCAGACACGGCCAAACTA+TGG - chr1_4:56476986-56477005 Msa0171750:intron 50.0%
TGCAGCAAAGCATGGTCAAC+TGG + chr1_4:56477598-56477617 None:intergenic 50.0%
TGAGCAAGGTCAACTGGACA+TGG - chr1_4:56477829-56477848 Msa0171750:intron 50.0%
GAAAGATGTTGGCAGAGTGG+AGG - chr1_4:56478237-56478256 Msa0171750:intron 50.0%
GGTGGTTAGGCTGTAACGAA+AGG + chr1_4:56478385-56478404 None:intergenic 50.0%
! CCAAGATTGGTCAACGCTTG+TGG + chr1_4:56478407-56478426 None:intergenic 50.0%
!! CCACAAGCGTTGACCAATCT+TGG - chr1_4:56478404-56478423 Msa0171750:intron 50.0%
ATTGATCCCTTGGCAGCTGA+TGG - chr1_4:56478853-56478872 Msa0171750:intron 50.0%
ACAAGACCATCAGCTGCCAA+GGG + chr1_4:56478862-56478881 None:intergenic 50.0%
TACAAGACCATCAGCTGCCA+AGG + chr1_4:56478863-56478882 None:intergenic 50.0%
ACATACGTGCGATTACCGTC+AGG - chr1_4:56478938-56478957 Msa0171750:intron 50.0%
GATTACCGTCAGGCCTACTA+TGG - chr1_4:56478948-56478967 Msa0171750:intron 50.0%
TTCAGCCATAGTAGGCCTGA+CGG + chr1_4:56478956-56478975 None:intergenic 50.0%
GCATGAGCTTCAGCCATAGT+AGG + chr1_4:56478964-56478983 None:intergenic 50.0%
ATATGTTGCAAGGGCGATGG+GGG + chr1_4:56479230-56479249 None:intergenic 50.0%
CATATGTTGCAAGGGCGATG+GGG + chr1_4:56479231-56479250 None:intergenic 50.0%
GGCTGTAAAGAGCTACAGAC+AGG - chr1_4:56479349-56479368 Msa0171750:intron 50.0%
!!! GTAGCCGCTTTTGACAACAG+AGG + chr1_4:56479620-56479639 None:intergenic 50.0%
! CCACTATGCAGTGACTGGTT+CGG - chr1_4:56479734-56479753 Msa0171750:intron 50.0%
!! GGCCGCTTCAACCTTTTTCA+CGG - chr1_4:56479776-56479795 Msa0171750:intron 50.0%
GCCCTTCAGGCCAATCAAAA+TGG - chr1_4:56479972-56479991 Msa0171750:intron 50.0%
CAGGCGCTATTTAAGTGACG+TGG + chr1_4:56480428-56480447 None:intergenic 50.0%
! ACCCAAAATTTGGAGCGGAG+CGG + chr1_4:56480466-56480485 None:intergenic 50.0%
!! CTCCGCTCCAAATTTTGGGT+TGG - chr1_4:56480466-56480485 Msa0171750:intron 50.0%
GGCCAACCCAAAATTTGGAG+CGG + chr1_4:56480471-56480490 None:intergenic 50.0%
GGTCAAACAGACAGCAAGCA+AGG + chr1_4:56480635-56480654 None:intergenic 50.0%
ATGCTATGGCATGGAAAGGC+TGG + chr1_4:56481126-56481145 None:intergenic 50.0%
!! AGAGCAAGCATTGGGTCAAG+TGG + chr1_4:56481151-56481170 None:intergenic 50.0%
ACTTGACCCAATGCTTGCTC+TGG - chr1_4:56481150-56481169 Msa0171750:intron 50.0%
TTGCGGCTGTGAAGAGACAA+AGG + chr1_4:56481265-56481284 None:intergenic 50.0%
CCCTCCTGCTTGATTGGAAT+AGG + chr1_4:56481352-56481371 None:intergenic 50.0%
ATTCCAATCAAGCAGGAGGG+AGG - chr1_4:56481352-56481371 Msa0171750:intron 50.0%
TAACCTCCCTCCTGCTTGAT+TGG + chr1_4:56481358-56481377 None:intergenic 50.0%
CCATGAGATGTGACAATGGG+TGG + chr1_4:56481519-56481538 None:intergenic 50.0%
CCACCCATTGTCACATCTCA+TGG - chr1_4:56481516-56481535 Msa0171750:intron 50.0%
ATGGAACCAGACCAAGATCC+TGG - chr1_4:56482854-56482873 Msa0171750:intron 50.0%
AATTCACCAGGCCAGGATCT+TGG + chr1_4:56482868-56482887 None:intergenic 50.0%
ATGGGATTTCCTGGCACAAC+CGG - chr1_4:56483046-56483065 Msa0171750:intron 50.0%
! TAGCAGTACTGGGTGTTACC+AGG - chr1_4:56483105-56483124 Msa0171750:intron 50.0%
CAAAGTAGCAATGCGGGAGA+TGG + chr1_4:56483240-56483259 None:intergenic 50.0%
GATCGTTTGGGCTGACAGTT+TGG + chr1_4:56483406-56483425 None:intergenic 50.0%
AGTCTCATTTCTCCTGCTGC+AGG + chr1_4:56483676-56483695 None:intergenic 50.0%
CAGCAGGAGAAATGAGACTG+AGG - chr1_4:56483677-56483696 Msa0171750:intron 50.0%
CTTTCAGATGCTGCTGCACA+AGG - chr1_4:56483905-56483924 Msa0171750:intron 50.0%
TTCAGATGCTGCTGCACAAG+GGG - chr1_4:56483907-56483926 Msa0171750:intron 50.0%
ATTATGGGCAGGTCTGCCTA+TGG - chr1_4:56484160-56484179 Msa0171750:CDS 50.0%
GGCTCACTCTGTATTTCCAC+TGG - chr1_4:56484221-56484240 Msa0171750:CDS 50.0%
! CTGTATTTCCACTGGACTGG+GGG - chr1_4:56484229-56484248 Msa0171750:CDS 50.0%
TAGTTAACCCCGCATGTCTG+AGG - chr1_4:56484803-56484822 Msa0171750:five_prime_UTR 50.0%
AGTTAACCCCGCATGTCTGA+GGG - chr1_4:56484804-56484823 Msa0171750:five_prime_UTR 50.0%
TTTGGCAACCCTCAGACATG+CGG + chr1_4:56484815-56484834 None:intergenic 50.0%
CAGAGACGGAGAAGGAACGA+AGG + chr1_4:56473736-56473755 None:intergenic 55.0%
CCTTCTCCGTCTCTGTTCAC+CGG - chr1_4:56473741-56473760 Msa0171750:CDS 55.0%
CGGAATCATGATCTCCGTCC+AGG - chr1_4:56473761-56473780 Msa0171750:CDS 55.0%
AGCCACCACTCTCAGCTTGT+TGG - chr1_4:56473807-56473826 Msa0171750:CDS 55.0%
AGCCAACAAGCTGAGAGTGG+TGG + chr1_4:56473812-56473831 None:intergenic 55.0%
TTGGCTCATCCGACAGCTCT+CGG - chr1_4:56473826-56473845 Msa0171750:intron 55.0%
TCAACGCGATCTCCGGTGAA+CGG + chr1_4:56473855-56473874 None:intergenic 55.0%
GAACGGTTCAACGCGATCTC+CGG + chr1_4:56473862-56473881 None:intergenic 55.0%
CCGTAACACTCGGCAAAGTG+TGG + chr1_4:56474524-56474543 None:intergenic 55.0%
GCAGCAGCAGAACCAACAGA+GGG + chr1_4:56475226-56475245 None:intergenic 55.0%
TGCAGCAGCAGAACCAACAG+AGG + chr1_4:56475227-56475246 None:intergenic 55.0%
!! GGACTGGCTATAGAGCAGGT+TGG + chr1_4:56475772-56475791 None:intergenic 55.0%
! AAAATGGCCATGTGCTGGCC+TGG - chr1_4:56476068-56476087 Msa0171750:intron 55.0%
! GCTGGTCTGTTCATGGAGTC+TGG - chr1_4:56476387-56476406 Msa0171750:intron 55.0%
GACACGGCCAAACTATGGCA+TGG - chr1_4:56476991-56477010 Msa0171750:intron 55.0%
GATCGATGACCTTGGTCTCC+AGG - chr1_4:56477178-56477197 Msa0171750:intron 55.0%
GTCAACGCTTGTGGGTGGTT+AGG + chr1_4:56478398-56478417 None:intergenic 55.0%
! GATTGGTCAACGCTTGTGGG+TGG + chr1_4:56478403-56478422 None:intergenic 55.0%
CAGCTGCCAAGGGATCAATG+CGG + chr1_4:56478852-56478871 None:intergenic 55.0%
GTTGTCAAAAGCGGCTACGC+CGG - chr1_4:56479622-56479641 Msa0171750:CDS 55.0%
AATTTCAACGCCACCGAGCC+AGG - chr1_4:56479669-56479688 Msa0171750:intron 55.0%
GAAGTGGAGAGCGGTCAAAG+CGG - chr1_4:56479710-56479729 Msa0171750:intron 55.0%
AAGTGGAGAGCGGTCAAAGC+GGG - chr1_4:56479711-56479730 Msa0171750:intron 55.0%
CCGAACCAGTCACTGCATAG+TGG + chr1_4:56479737-56479756 None:intergenic 55.0%
!! TGACTGGTTCGGAGCAGCAT+GGG - chr1_4:56479745-56479764 Msa0171750:intron 55.0%
! TCCCGCTCCGCTCCAAATTT+TGG - chr1_4:56480461-56480480 Msa0171750:intron 55.0%
! CCCAAAATTTGGAGCGGAGC+GGG + chr1_4:56480465-56480484 None:intergenic 55.0%
! CCCGCTCCGCTCCAAATTTT+GGG - chr1_4:56480462-56480481 Msa0171750:intron 55.0%
TGCGCGGCCAACCCAAAATT+TGG + chr1_4:56480476-56480495 None:intergenic 55.0%
GCAGTGTGTCTGTTGTTGGG+AGG - chr1_4:56480915-56480934 Msa0171750:intron 55.0%
GCATGGAAAGGCTGGACACT+AGG + chr1_4:56481118-56481137 None:intergenic 55.0%
GGAGCAGGATGGCTAAATGG+TGG + chr1_4:56481331-56481350 None:intergenic 55.0%
TATGTAGCTCCGGTTGTGCC+AGG + chr1_4:56483058-56483077 None:intergenic 55.0%
GCGCTCAATGTCTTTGCCCT+GGG - chr1_4:56483343-56483362 Msa0171750:intron 55.0%
AAGAGCCAAAGCGCGCTGTT+GGG + chr1_4:56483646-56483665 None:intergenic 55.0%
GGGACGAGATGATTGTCAGC+AGG - chr1_4:56484249-56484268 Msa0171750:CDS 55.0%
TTGGCAACCCTCAGACATGC+GGG + chr1_4:56484814-56484833 None:intergenic 55.0%
GAGATCTGGGCCGTCGATGT+AGG + chr1_4:56473469-56473488 None:intergenic 60.0%
CCGGTGAACAGAGACGGAGA+AGG + chr1_4:56473744-56473763 None:intergenic 60.0%
GCGATGGTGATCTCCCTGGA+CGG + chr1_4:56473778-56473797 None:intergenic 60.0%
GAGAGTGGTGGCTGTAGTGG+TGG + chr1_4:56473800-56473819 None:intergenic 60.0%
GCTGAGAGTGGTGGCTGTAG+TGG + chr1_4:56473803-56473822 None:intergenic 60.0%
GAACGGCAACCGAGAGCTGT+CGG + chr1_4:56473838-56473857 None:intergenic 60.0%
AGCTCTCGGTTGCCGTTCAC+CGG - chr1_4:56473840-56473859 Msa0171750:intron 60.0%
AAGGAACCCTCCAGGCTTCC+AGG + chr1_4:56476089-56476108 None:intergenic 60.0%
! GGTCCTCCGCATTGATCCCT+TGG - chr1_4:56478843-56478862 Msa0171750:intron 60.0%
CTGCCAAGGGATCAATGCGG+AGG + chr1_4:56478849-56478868 None:intergenic 60.0%
!! GTGACTGGTTCGGAGCAGCA+TGG - chr1_4:56479744-56479763 Msa0171750:intron 60.0%
!! GACTGGTTCGGAGCAGCATG+GGG - chr1_4:56479746-56479765 Msa0171750:intron 60.0%
GGAGCAGCATGGGGTCAATG+CGG - chr1_4:56479755-56479774 Msa0171750:intron 60.0%
! AATTTGGAGCGGAGCGGGAG+CGG + chr1_4:56480460-56480479 None:intergenic 60.0%
ACCAGACCAAGATCCTGGCC+TGG - chr1_4:56482859-56482878 Msa0171750:intron 60.0%
ACCAGGCCAGGATCTTGGTC+TGG + chr1_4:56482863-56482882 None:intergenic 60.0%
GGCGCTCAATGTCTTTGCCC+TGG - chr1_4:56483342-56483361 Msa0171750:intron 60.0%
GTGTACCCAACAGCGCGCTT+TGG - chr1_4:56483638-56483657 Msa0171750:intron 60.0%
CAAGAGCCAAAGCGCGCTGT+TGG + chr1_4:56483647-56483666 None:intergenic 60.0%
TGGCAACCCTCAGACATGCG+GGG + chr1_4:56484813-56484832 None:intergenic 60.0%
GGTGGCGATGGTGATCTCCC+TGG + chr1_4:56473782-56473801 None:intergenic 65.0%
! GGTGGCTGTAGTGGTGGCGA+TGG + chr1_4:56473794-56473813 None:intergenic 65.0%
CAGGCTTCCAGGCCAGCACA+TGG + chr1_4:56476078-56476097 None:intergenic 65.0%
! CATGTGCTGGCCTGGAAGCC+TGG - chr1_4:56476076-56476095 Msa0171750:intron 65.0%
! TGCTGGCCTGGAAGCCTGGA+GGG - chr1_4:56476080-56476099 Msa0171750:intron 65.0%
CTTCGCGCTGCTATAGCGGC+CGG + chr1_4:56479644-56479663 None:intergenic 65.0%
GCCGCTATAGCAGCGCGAAG+CGG - chr1_4:56479644-56479663 Msa0171750:CDS 65.0%
CCCGCTTCGCGCTGCTATAG+CGG + chr1_4:56479648-56479667 None:intergenic 65.0%
CCGCTATAGCAGCGCGAAGC+GGG - chr1_4:56479645-56479664 Msa0171750:CDS 65.0%
TCTCCACTTCCGACACGCCC+CGG + chr1_4:56479700-56479719 None:intergenic 65.0%
GGCGTGTCGGAAGTGGAGAG+CGG - chr1_4:56479701-56479720 Msa0171750:intron 65.0%
GCGGGCCACTATGCAGTGAC+TGG - chr1_4:56479729-56479748 Msa0171750:intron 65.0%
CATCTCGTCCCCCAGTCCAG+TGG + chr1_4:56484240-56484259 None:intergenic 65.0%
! GTGCTGGCCTGGAAGCCTGG+AGG - chr1_4:56476079-56476098 Msa0171750:intron 70.0%
GCCACCGAGCCAGGCTGCAC+CGG - chr1_4:56479678-56479697 Msa0171750:intron 75.0%
CCACCGAGCCAGGCTGCACC+GGG - chr1_4:56479679-56479698 Msa0171750:intron 75.0%
CACCGAGCCAGGCTGCACCG+GGG - chr1_4:56479680-56479699 Msa0171750:intron 75.0%
CAGGCTGCACCGGGGCGTGT+CGG - chr1_4:56479688-56479707 Msa0171750:intron 75.0%
GCACCGGGGCGTGTCGGAAG+TGG - chr1_4:56479694-56479713 Msa0171750:intron 75.0%
!!! CCCGGTGCAGCCTGGCTCGG+TGG + chr1_4:56479682-56479701 None:intergenic 80.0%
! CGCCCCGGTGCAGCCTGGCT+CGG + chr1_4:56479685-56479704 None:intergenic 80.0%
! CGACACGCCCCGGTGCAGCC+TGG + chr1_4:56479690-56479709 None:intergenic 80.0%
! AGCGGAGCGGGAGCGGCGAG+GGG + chr1_4:56480453-56480472 None:intergenic 80.0%
! GAGCGGAGCGGGAGCGGCGA+GGG + chr1_4:56480454-56480473 None:intergenic 80.0%
! GCGGGAGCGGCGAGGGGAGC+AGG + chr1_4:56480447-56480466 None:intergenic 85.0%
! GGAGCGGAGCGGGAGCGGCG+AGG + chr1_4:56480455-56480474 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56473445 56485030 56473445 ID=Msa0171750;Name=Msa0171750
chr1_4 mRNA 56473445 56485030 56473445 ID=Msa0171750-mRNA-1;Parent=Msa0171750;Name=Msa0171750-mRNA-1;_AED=0.20;_eAED=0.20;_QI=323|1|1|1|0.96|0.96|28|285|986
chr1_4 exon 56473445 56473843 56473445 ID=Msa0171750-mRNA-1:exon:17073;Parent=Msa0171750-mRNA-1
chr1_4 exon 56473932 56474052 56473932 ID=Msa0171750-mRNA-1:exon:17072;Parent=Msa0171750-mRNA-1
chr1_4 exon 56474205 56474351 56474205 ID=Msa0171750-mRNA-1:exon:17071;Parent=Msa0171750-mRNA-1
chr1_4 exon 56474458 56474563 56474458 ID=Msa0171750-mRNA-1:exon:17070;Parent=Msa0171750-mRNA-1
chr1_4 exon 56474772 56474854 56474772 ID=Msa0171750-mRNA-1:exon:17069;Parent=Msa0171750-mRNA-1
chr1_4 exon 56474966 56475093 56474966 ID=Msa0171750-mRNA-1:exon:17068;Parent=Msa0171750-mRNA-1
chr1_4 exon 56475199 56475285 56475199 ID=Msa0171750-mRNA-1:exon:17067;Parent=Msa0171750-mRNA-1
chr1_4 exon 56475373 56475483 56475373 ID=Msa0171750-mRNA-1:exon:17066;Parent=Msa0171750-mRNA-1
chr1_4 exon 56476646 56476813 56476646 ID=Msa0171750-mRNA-1:exon:17065;Parent=Msa0171750-mRNA-1
chr1_4 exon 56476899 56476983 56476899 ID=Msa0171750-mRNA-1:exon:17064;Parent=Msa0171750-mRNA-1
chr1_4 exon 56477080 56477196 56477080 ID=Msa0171750-mRNA-1:exon:17063;Parent=Msa0171750-mRNA-1
chr1_4 exon 56477296 56477372 56477296 ID=Msa0171750-mRNA-1:exon:17062;Parent=Msa0171750-mRNA-1
chr1_4 exon 56477485 56477556 56477485 ID=Msa0171750-mRNA-1:exon:17061;Parent=Msa0171750-mRNA-1
chr1_4 exon 56479045 56479141 56479045 ID=Msa0171750-mRNA-1:exon:17060;Parent=Msa0171750-mRNA-1
chr1_4 exon 56479465 56479667 56479465 ID=Msa0171750-mRNA-1:exon:17059;Parent=Msa0171750-mRNA-1
chr1_4 exon 56479843 56479945 56479843 ID=Msa0171750-mRNA-1:exon:17058;Parent=Msa0171750-mRNA-1
chr1_4 exon 56480031 56480098 56480031 ID=Msa0171750-mRNA-1:exon:17057;Parent=Msa0171750-mRNA-1
chr1_4 exon 56480196 56480249 56480196 ID=Msa0171750-mRNA-1:exon:17056;Parent=Msa0171750-mRNA-1
chr1_4 exon 56480559 56480668 56480559 ID=Msa0171750-mRNA-1:exon:17055;Parent=Msa0171750-mRNA-1
chr1_4 exon 56481456 56481534 56481456 ID=Msa0171750-mRNA-1:exon:17054;Parent=Msa0171750-mRNA-1
chr1_4 exon 56481631 56481693 56481631 ID=Msa0171750-mRNA-1:exon:17053;Parent=Msa0171750-mRNA-1
chr1_4 exon 56482035 56482154 56482035 ID=Msa0171750-mRNA-1:exon:17052;Parent=Msa0171750-mRNA-1
chr1_4 exon 56482888 56482944 56482888 ID=Msa0171750-mRNA-1:exon:17051;Parent=Msa0171750-mRNA-1
chr1_4 exon 56483111 56483227 56483111 ID=Msa0171750-mRNA-1:exon:17050;Parent=Msa0171750-mRNA-1
chr1_4 exon 56483745 56483795 56483745 ID=Msa0171750-mRNA-1:exon:17049;Parent=Msa0171750-mRNA-1
chr1_4 exon 56483910 56484008 56483910 ID=Msa0171750-mRNA-1:exon:17048;Parent=Msa0171750-mRNA-1
chr1_4 exon 56484126 56484271 56484126 ID=Msa0171750-mRNA-1:exon:17047;Parent=Msa0171750-mRNA-1
chr1_4 exon 56484530 56485030 56484530 ID=Msa0171750-mRNA-1:exon:17046;Parent=Msa0171750-mRNA-1
chr1_4 five_prime_UTR 56484708 56485030 56484708 ID=Msa0171750-mRNA-1:five_prime_utr;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56484530 56484707 56484530 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56484126 56484271 56484126 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56483910 56484008 56483910 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56483745 56483795 56483745 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56483111 56483227 56483111 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56482888 56482944 56482888 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56482035 56482154 56482035 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56481631 56481693 56481631 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56481456 56481534 56481456 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56480559 56480668 56480559 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56480196 56480249 56480196 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56480031 56480098 56480031 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56479843 56479945 56479843 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56479465 56479667 56479465 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56479045 56479141 56479045 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56477485 56477556 56477485 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56477296 56477372 56477296 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56477080 56477196 56477080 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56476899 56476983 56476899 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56476646 56476813 56476646 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56475373 56475483 56475373 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56475199 56475285 56475199 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56474966 56475093 56474966 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56474772 56474854 56474772 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56474458 56474563 56474458 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56474205 56474351 56474205 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56473932 56474052 56473932 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 CDS 56473730 56473843 56473730 ID=Msa0171750-mRNA-1:cds;Parent=Msa0171750-mRNA-1
chr1_4 three_prime_UTR 56473445 56473729 56473445 ID=Msa0171750-mRNA-1:three_prime_utr;Parent=Msa0171750-mRNA-1
Gene Sequence

>Msa0171750

ATGATCTCCGTCCAGGGAGATCACCATCGCCACCACTACAGCCACCACTCTCAGCTTGTTGGCTCATCCGACAGCTCTCGGTTGCCGTTCACCGGAGATCGCGTTGAACCGTTCGCCGTTAAGCAAGAGACGTCGTCGCTCACGTTATTGCCTTTACACGCTCATGATTCTAGTGAAGTTGATGAAGATTTGCATTTGACTCTTGCACATCAAATGTACAAGAGTGGAAGTTATAAGAAAGCGTTAGAGCATAGCAACACTGTCTATGAGAGAAATCCGCTTCGCACCGATAATTTACTACTCCTTGGTGCAATTTATTACCAGTTGCATGATTTTGATATGTGCGTGGCAAAAAATGAAGAAGCACTTAGGATTGAGCCACACTTTGCCGAGTGTTACGGTAATATGGCAAATGCATGGAAGGAAAAAGGCAACATTGACCTTGCAATTCGCTATTACTTGATTGCCATTGAGCTTCGTCCCAATTTTGCTGATGCATGGTCAAACCTAGCTAGTGCATACATGCGTAAAGGAAGACTTACTGAAGCAGCTCAATGTTGTCGTCAAGCACTTGCTATCAACCCTCTAATGGTTGATGCTCATAGTAACTTGGGTAATCTAATGAAAGCTCAAGGGTTGGTCCAAGAAGCATACAGTTGTTACCTCGAGGCATTGCGTATACAACCTACCTTTGCTATTGCATGGTCAAATCTTGCTGGTCTGTTCATGGAGTCTGGTGATTTCAACAGAGCCCTGCAGTATTACAAGGAAGCTGTTAAACTCAAACCTTCCTTCCCTGATGCATACTTGAACCTTGGGAATGTATACAAGGCTTTAGGGATGCCTCAAGAAGCTATTGCATGTTATCAACATGCTCTTCAGACACGGCCAAACTATGGCATGGCTTATGGTAATTTGGCCAGTATACATTATGAGCAAGGTCAACTGGACATGGCAATTCTACACTACAAACAAGCTATTGCATGTGACCCCAGATTTTTGGAAGCTTACAATAATTTGGGTAATGCTCTGAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATCAATGCCTTTCGTTACAGCCTAACCACCCACAAGCGTTGACCAATCTTGGAAATATATACATGGAATGGAACATGGTGGCTGCTGCTGCTTCATATTATAAAGCTACACTAAATGTAACCACTGGATTATCTGCACCGTATAACAACCTTGCTATAATATATAAGCAGCAGGGGAATTATGCAGATGCCATATCTTGCTACAATGAGGTCCTCCGCATTGATCCCTTGGCAGCTGATGGTCTTGTAAACAGAGGCAATACTTATAAGGAGATTGGTAGAGTCAGTGATGCTATCCAGGATTACATACGTGCGATTACCGTCAGGCCTACTATGGCTGAAGCTCATGCTAATTTGGCTTCTGCCTATAAGGATAGTGGACATGTAGAGGCGGCTGTAAAGAGCTACAGACAGGCATTGATTCTTCGTACAGACTTTCCTGAAGCAACTTGCAATCTTCTACATACACTTCAGTGTGTCTGTTGTTGGGAGGATCGTGATCAAATGTTCAAGGAAGTAGAAGGGATTATCAGAAGACAAATTAATATGTCAGTTCTTCCTAGTGTCCAGCCTTTCCATGCCATAGCATATCCACTTGACCCAATGCTTGCTCTGGAAATTAGCCGCAAATATGCTGCACACTGCTCTGTAATTGCATCTCGTTTCTCTCTACCACCATTTAGCCATCCTGCTCCTATTCCAATCAAGCAGGAGGGAGGTTATGAAAGACTAAGGATTGGGTATGTGAGTAGTGACTTTGGTAACCACCCATTGTCACATCTCATGGGATCTGTTTTCGGTATGCACAACAGAAAGAATGTGGAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAATGGAGACAGCGTATTCAATCTGAAGCAGAGCACTTTGTGGATGTATCTGCCATGATATCAGATACGATAGCAAAATTGATCAACGAGGATAAGATTCAAATCCTTATCAACCTTAATGGTTATACAAAGGGTGCAAGAAATGAGATATTTGCTATGAAACCTGCACCAGTTCAAGTTTCATATATGGGATTTCCTGGCACAACCGGAGCTACATACATAGATTACTTGGTCACTGATGAGTTTGTTTCACCTCTTCAGTATGCACATATCTACTCTGAAAAGATTGTCCATCTCCCGCATTGCTACTTTGTAAACGATTATAAACAGAAAAATCAGGATGTGTTAGATCCAAACTGTCAGCCCAAACGATCAGATTATGGTCTCCCTGAGGATAAGTTTTTATTTGCATGCTTCAATCAACTTTACAAGATGGATCCTGAAATATTTAATACATGGTGCAATATACTTAAACGTGTACCCAACAGCGCGCTTTGGCTCTTGAAATTTCCTGCAGCAGGAGAAATGAGACTGAGGGCATATGCTGCTGCACAAGGGGTACAACCTGATCAAATTATCTTCACAGATGTTGCAATGAAGGGTGAACACATTAGACGGAGTTCCTTGGCAGACTTATTTCTTGACACGCCTTTATGCAATGCACATACCACAGGAACAGATATATTATGGGCAGGTCTGCCTATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGGGTTGCTGGCTCACTCTGTATTTCCACTGGACTGGGGGACGAGATGATTGTCAGCAGTATGAAAGAGTATGAAGATAGAGCTGTATCGCTTGCTCTGAATCGCCCAAAGCTTCAAGCTCTAACTGACAAGCTCAAATCTGTGCGTCTGACCTGTCCTCTCTTTGACACAAACCGATGGGTGAGAAATCTCGACAGAGCATATTTTAAAATGTGGAATCTGCATTGCTCTGGTCAACGGCCACAGCATTTTAAGGTCACTGAAAATGATAACGAATGTCCAGATGATAAATAG
Protein sequence

>Msa0171750

MISVQGDHHRHHYSHHSQLVGSSDSSRLPFTGDRVEPFAVKQETSSLTLLPLHAHDSSEVDEDLHLTLAHQMYKSGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSLQPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDSGHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSAMISDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVAMKGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLGDEMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLDRAYFKMWNLHCSGQRPQHFKVTENDNECPDDK*