Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031940 | Msa0031970 | 0.905853 | 2.765376e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTACAATACTGTTCTTCT+TGG | 0.280222 | 1_1:+58869701 | None:intergenic |
| CAATGTCAGGAAAGCTTGTT+TGG | 0.329019 | 1_1:-58870753 | Msa0031970:CDS |
| GACATACATGTCTTCATTGC+TGG | 0.355168 | 1_1:-58870646 | Msa0031970:intron |
| TTGCAATGTTCAATAGTATC+AGG | 0.388193 | 1_1:-58870711 | Msa0031970:CDS |
| ACACTGTTGATCCAAGGAAT+TGG | 0.424563 | 1_1:+58869812 | None:intergenic |
| CAGAGATGGATTCGTGGATC+AGG | 0.433684 | 1_1:+58869622 | None:intergenic |
| ACTGTGCCTTTGTCAATGTC+AGG | 0.443405 | 1_1:-58870766 | Msa0031970:CDS |
| CAGGAATCAGAACTTGGCTC+TGG | 0.444827 | 1_1:-58870692 | Msa0031970:CDS |
| TATTGAGGTGCTGGCTGCTA+TGG | 0.459330 | 1_1:+58869754 | None:intergenic |
| AGTGTGTAAGTGGTTTCATT+TGG | 0.459889 | 1_1:-58869794 | Msa0031970:CDS |
| ATCCAGCAAAACCAATTCCT+TGG | 0.465680 | 1_1:-58869823 | Msa0031970:CDS |
| GTCAGGAAAGCTTGTTTGGA+TGG | 0.471241 | 1_1:-58870749 | Msa0031970:CDS |
| CGTAGATGCTATTGAGGTGC+TGG | 0.472385 | 1_1:+58869745 | None:intergenic |
| TTGGATCAACAGTGTGTAAG+TGG | 0.489013 | 1_1:-58869804 | Msa0031970:CDS |
| ATATCTTGTTTGTGCAGAGA+TGG | 0.502644 | 1_1:+58869608 | None:intergenic |
| GCGATATGACGCGATGGAGC+TGG | 0.512235 | 1_1:+58869847 | None:intergenic |
| TCAGGAAAGCTTGTTTGGAT+GGG | 0.552185 | 1_1:-58870748 | Msa0031970:CDS |
| AAGAATCGTAGATGCTATTG+AGG | 0.568594 | 1_1:+58869739 | None:intergenic |
| TAGTATCAGGAATCAGAACT+TGG | 0.570411 | 1_1:-58870698 | Msa0031970:CDS |
| TTTGTGCAGAGATGGATTCG+TGG | 0.583290 | 1_1:+58869616 | None:intergenic |
| TGAACATTGCAATACATAGG+TGG | 0.583589 | 1_1:+58870722 | None:intergenic |
| GAACATTGCAATACATAGGT+GGG | 0.586270 | 1_1:+58870723 | None:intergenic |
| TGTAACTAATAACCGTCGGC+TGG | 0.592322 | 1_1:-58869685 | Msa0031970:CDS |
| AGGAATCAGAACTTGGCTCT+GGG | 0.596621 | 1_1:-58870691 | Msa0031970:CDS |
| TATTGAACATTGCAATACAT+AGG | 0.610369 | 1_1:+58870719 | None:intergenic |
| ACTTACACACTGTTGATCCA+AGG | 0.627161 | 1_1:+58869806 | None:intergenic |
| AGCTTTCCTGACATTGACAA+AGG | 0.634619 | 1_1:+58870760 | None:intergenic |
| GAGTCAAAAGTGCCAGCCGA+CGG | 0.652825 | 1_1:+58869673 | None:intergenic |
| GTATTGTAACTAATAACCGT+CGG | 0.671596 | 1_1:-58869689 | Msa0031970:CDS |
| CTGGCTGCTATGGTTAACAA+AGG | 0.686433 | 1_1:+58869764 | None:intergenic |
| TGGATGGCGATATGACGCGA+TGG | 0.754757 | 1_1:+58869841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAAAAAAATCAATG+AGG | + | chr1_1:58870702-58870721 | None:intergenic | 10.0% |
| !! | ATATAAAAAAAAAATCAATG+AGG | + | chr1_1:58870702-58870721 | None:intergenic | 10.0% |
| !! | AAATAACAATAACATGAAAA+AGG | + | chr1_1:58869941-58869960 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAATGAAGTTAC+GGG | + | chr1_1:58870741-58870760 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAAATGAAGTTA+CGG | + | chr1_1:58870742-58870761 | None:intergenic | 15.0% |
| !!! | ATTATAACTTTTTTTTGAAC+CGG | + | chr1_1:58870877-58870896 | None:intergenic | 15.0% |
| !! | AAATAACAATAACATGAAAA+AGG | + | chr1_1:58869941-58869960 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAATGAAGTTAC+GGG | + | chr1_1:58870741-58870760 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAAATGAAGTTA+CGG | + | chr1_1:58870742-58870761 | None:intergenic | 15.0% |
| !!! | ATTATAACTTTTTTTTGAAC+CGG | + | chr1_1:58870877-58870896 | None:intergenic | 15.0% |
| !!! | CAAAAAAAAAACATTTGTTG+AGG | + | chr1_1:58869670-58869689 | None:intergenic | 20.0% |
| !!! | TACTAGTTTGTGTTATTTAA+CGG | - | chr1_1:58869836-58869855 | Msa0031970:CDS | 20.0% |
| !!! | CTTCTAGTTCATTTTATTTT+TGG | - | chr1_1:58870034-58870053 | Msa0031970:intron | 20.0% |
| !! | GTAATGTATCATAATTATCA+TGG | - | chr1_1:58870162-58870181 | Msa0031970:intron | 20.0% |
| !!! | ATTTTGTATACAATTTACAG+AGG | - | chr1_1:58870640-58870659 | Msa0031970:intron | 20.0% |
| !!! | CGTAACTTCATTTTTAAAAT+TGG | - | chr1_1:58870740-58870759 | Msa0031970:CDS | 20.0% |
| !! | GTTATAATATTTCATTTCTG+TGG | - | chr1_1:58870889-58870908 | Msa0031970:intron | 20.0% |
| !!! | ACGTTTTCAAAAAATATTTC+CGG | + | chr1_1:58871113-58871132 | None:intergenic | 20.0% |
| !!! | CAAAAAAAAAACATTTGTTG+AGG | + | chr1_1:58869670-58869689 | None:intergenic | 20.0% |
| !!! | TACTAGTTTGTGTTATTTAA+CGG | - | chr1_1:58869836-58869855 | Msa0031970:CDS | 20.0% |
| !!! | CTTCTAGTTCATTTTATTTT+TGG | - | chr1_1:58870034-58870053 | Msa0031970:intron | 20.0% |
| !! | GTAATGTATCATAATTATCA+TGG | - | chr1_1:58870162-58870181 | Msa0031970:intron | 20.0% |
| !!! | ATTTTGTATACAATTTACAG+AGG | - | chr1_1:58870640-58870659 | Msa0031970:intron | 20.0% |
| !!! | CGTAACTTCATTTTTAAAAT+TGG | - | chr1_1:58870740-58870759 | Msa0031970:CDS | 20.0% |
| !! | GTTATAATATTTCATTTCTG+TGG | - | chr1_1:58870889-58870908 | Msa0031970:intron | 20.0% |
| !!! | ACGTTTTCAAAAAATATTTC+CGG | + | chr1_1:58871113-58871132 | None:intergenic | 20.0% |
| !!! | ACTAGTTTGTGTTATTTAAC+GGG | - | chr1_1:58869837-58869856 | Msa0031970:CDS | 25.0% |
| ! | AACATGAAAAAGGAGTTATA+AGG | + | chr1_1:58869931-58869950 | None:intergenic | 25.0% |
| !!! | CTAGTTCATTTTATTTTTGG+TGG | - | chr1_1:58870037-58870056 | Msa0031970:intron | 25.0% |
| !!! | GTTATTTCTAGTTTTCAAAG+AGG | + | chr1_1:58870207-58870226 | None:intergenic | 25.0% |
| ! | TATTGAACATTGCAATACAT+AGG | + | chr1_1:58870310-58870329 | None:intergenic | 25.0% |
| ! | TAATTAAGAATCTGCAAACA+TGG | + | chr1_1:58870438-58870457 | None:intergenic | 25.0% |
| !!! | TTGACCTTTACACATTTTTT+GGG | - | chr1_1:58870562-58870581 | Msa0031970:intron | 25.0% |
| !!! | TAAGGATTTTCTTCTAGTTA+AGG | + | chr1_1:58870603-58870622 | None:intergenic | 25.0% |
| !! | AACTTTTATCTATGATGCAT+AGG | + | chr1_1:58870798-58870817 | None:intergenic | 25.0% |
| !! | TATCATAACTTGAAAGCATA+TGG | + | chr1_1:58870851-58870870 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTATGATATTTC+CGG | - | chr1_1:58870855-58870874 | Msa0031970:intron | 25.0% |
| !! | CAACCTTTTAAACAACAAAT+CGG | - | chr1_1:58871031-58871050 | Msa0031970:intron | 25.0% |
| !! | AACCTTTTAAACAACAAATC+GGG | - | chr1_1:58871032-58871051 | Msa0031970:intron | 25.0% |
| !!! | ACTAGTTTGTGTTATTTAAC+GGG | - | chr1_1:58869837-58869856 | Msa0031970:CDS | 25.0% |
| ! | AACATGAAAAAGGAGTTATA+AGG | + | chr1_1:58869931-58869950 | None:intergenic | 25.0% |
| !!! | CTAGTTCATTTTATTTTTGG+TGG | - | chr1_1:58870037-58870056 | Msa0031970:intron | 25.0% |
| !!! | GTTATTTCTAGTTTTCAAAG+AGG | + | chr1_1:58870207-58870226 | None:intergenic | 25.0% |
| ! | TATTGAACATTGCAATACAT+AGG | + | chr1_1:58870310-58870329 | None:intergenic | 25.0% |
| ! | TAATTAAGAATCTGCAAACA+TGG | + | chr1_1:58870438-58870457 | None:intergenic | 25.0% |
| !!! | TTGACCTTTACACATTTTTT+GGG | - | chr1_1:58870562-58870581 | Msa0031970:intron | 25.0% |
| !!! | TAAGGATTTTCTTCTAGTTA+AGG | + | chr1_1:58870603-58870622 | None:intergenic | 25.0% |
| !! | AACTTTTATCTATGATGCAT+AGG | + | chr1_1:58870798-58870817 | None:intergenic | 25.0% |
| !! | TATCATAACTTGAAAGCATA+TGG | + | chr1_1:58870851-58870870 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTATGATATTTC+CGG | - | chr1_1:58870855-58870874 | Msa0031970:intron | 25.0% |
| !! | CAACCTTTTAAACAACAAAT+CGG | - | chr1_1:58871031-58871050 | Msa0031970:intron | 25.0% |
| !! | AACCTTTTAAACAACAAATC+GGG | - | chr1_1:58871032-58871051 | Msa0031970:intron | 25.0% |
| !! | ATCATTTGACTTGAACATGT+AGG | + | chr1_1:58869642-58869661 | None:intergenic | 30.0% |
| CAGCAAAATTTATTGAAACG+CGG | - | chr1_1:58869699-58869718 | Msa0031970:CDS | 30.0% | |
| AAAAGGAGTTATAAGGTGAA+TGG | + | chr1_1:58869924-58869943 | None:intergenic | 30.0% | |
| ATAAAAAATCACAAGGTAGC+AGG | + | chr1_1:58870111-58870130 | None:intergenic | 30.0% | |
| !!! | CTACCTTGTGATTTTTTATC+AGG | - | chr1_1:58870112-58870131 | Msa0031970:intron | 30.0% |
| ACACCTGATAAAAAATCACA+AGG | + | chr1_1:58870118-58870137 | None:intergenic | 30.0% | |
| ! | CATTGTAACTTGCATGTTTA+AGG | - | chr1_1:58870226-58870245 | Msa0031970:intron | 30.0% |
| TTGCAATGTTCAATAGTATC+AGG | - | chr1_1:58870315-58870334 | Msa0031970:intron | 30.0% | |
| !!! | TCTGGGTAAAATTTTGACTA+TGG | - | chr1_1:58870352-58870371 | Msa0031970:intron | 30.0% |
| TGCAGATTCTTAATTAACTC+CGG | - | chr1_1:58870442-58870461 | Msa0031970:intron | 30.0% | |
| AACATGTCAACTTACAAAAC+CGG | + | chr1_1:58870464-58870483 | None:intergenic | 30.0% | |
| !! | ATGTTTGTTGTGCTTATGTT+TGG | - | chr1_1:58870479-58870498 | Msa0031970:intron | 30.0% |
| TCAACATGTTACGTAAAAAG+AGG | + | chr1_1:58870546-58870565 | None:intergenic | 30.0% | |
| !!! | GTTGACCTTTACACATTTTT+TGG | - | chr1_1:58870561-58870580 | Msa0031970:intron | 30.0% |
| TAAGCCCAAAAAATGTGTAA+AGG | + | chr1_1:58870569-58870588 | None:intergenic | 30.0% | |
| !!! | TCTCACTTTTTTCATTGCTA+AGG | + | chr1_1:58870621-58870640 | None:intergenic | 30.0% |
| GAGATGCTAGTTAAGAATTA+GGG | + | chr1_1:58870668-58870687 | None:intergenic | 30.0% | |
| TGAGATGCTAGTTAAGAATT+AGG | + | chr1_1:58870669-58870688 | None:intergenic | 30.0% | |
| GTTAGTTCATTCTGATGATA+AGG | - | chr1_1:58871063-58871082 | Msa0031970:intron | 30.0% | |
| ! | GGCTAACTTACTTGTTAATA+TGG | + | chr1_1:58871161-58871180 | None:intergenic | 30.0% |
| AGTTACAATACTGTTCTTCT+TGG | + | chr1_1:58871328-58871347 | None:intergenic | 30.0% | |
| GTATTGTAACTAATAACCGT+CGG | - | chr1_1:58871337-58871356 | Msa0031970:intron | 30.0% | |
| !! | ATCATTTGACTTGAACATGT+AGG | + | chr1_1:58869642-58869661 | None:intergenic | 30.0% |
| CAGCAAAATTTATTGAAACG+CGG | - | chr1_1:58869699-58869718 | Msa0031970:CDS | 30.0% | |
| AAAAGGAGTTATAAGGTGAA+TGG | + | chr1_1:58869924-58869943 | None:intergenic | 30.0% | |
| ATAAAAAATCACAAGGTAGC+AGG | + | chr1_1:58870111-58870130 | None:intergenic | 30.0% | |
| !!! | CTACCTTGTGATTTTTTATC+AGG | - | chr1_1:58870112-58870131 | Msa0031970:intron | 30.0% |
| ACACCTGATAAAAAATCACA+AGG | + | chr1_1:58870118-58870137 | None:intergenic | 30.0% | |
| ! | CATTGTAACTTGCATGTTTA+AGG | - | chr1_1:58870226-58870245 | Msa0031970:intron | 30.0% |
| TTGCAATGTTCAATAGTATC+AGG | - | chr1_1:58870315-58870334 | Msa0031970:intron | 30.0% | |
| !!! | TCTGGGTAAAATTTTGACTA+TGG | - | chr1_1:58870352-58870371 | Msa0031970:intron | 30.0% |
| TGCAGATTCTTAATTAACTC+CGG | - | chr1_1:58870442-58870461 | Msa0031970:intron | 30.0% | |
| AACATGTCAACTTACAAAAC+CGG | + | chr1_1:58870464-58870483 | None:intergenic | 30.0% | |
| !! | ATGTTTGTTGTGCTTATGTT+TGG | - | chr1_1:58870479-58870498 | Msa0031970:intron | 30.0% |
| TCAACATGTTACGTAAAAAG+AGG | + | chr1_1:58870546-58870565 | None:intergenic | 30.0% | |
| !!! | GTTGACCTTTACACATTTTT+TGG | - | chr1_1:58870561-58870580 | Msa0031970:intron | 30.0% |
| TAAGCCCAAAAAATGTGTAA+AGG | + | chr1_1:58870569-58870588 | None:intergenic | 30.0% | |
| !!! | TCTCACTTTTTTCATTGCTA+AGG | + | chr1_1:58870621-58870640 | None:intergenic | 30.0% |
| GAGATGCTAGTTAAGAATTA+GGG | + | chr1_1:58870668-58870687 | None:intergenic | 30.0% | |
| TGAGATGCTAGTTAAGAATT+AGG | + | chr1_1:58870669-58870688 | None:intergenic | 30.0% | |
| GTTAGTTCATTCTGATGATA+AGG | - | chr1_1:58871063-58871082 | Msa0031970:intron | 30.0% | |
| ! | GGCTAACTTACTTGTTAATA+TGG | + | chr1_1:58871161-58871180 | None:intergenic | 30.0% |
| AGTTACAATACTGTTCTTCT+TGG | + | chr1_1:58871328-58871347 | None:intergenic | 30.0% | |
| GTATTGTAACTAATAACCGT+CGG | - | chr1_1:58871337-58871356 | Msa0031970:intron | 30.0% | |
| AGCTCTCACAATCAAGAAAT+TGG | + | chr1_1:58869616-58869635 | None:intergenic | 35.0% | |
| TATCTTTGTACGACTTGTAC+AGG | + | chr1_1:58869727-58869746 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAAGAAAGAGACA+CGG | + | chr1_1:58869901-58869920 | None:intergenic | 35.0% |
| AAGCACAAAACTTGAAGACT+TGG | + | chr1_1:58870017-58870036 | None:intergenic | 35.0% | |
| GAACATTGCAATACATAGGT+GGG | + | chr1_1:58870306-58870325 | None:intergenic | 35.0% | |
| TGAACATTGCAATACATAGG+TGG | + | chr1_1:58870307-58870326 | None:intergenic | 35.0% | |
| TAGTATCAGGAATCAGAACT+TGG | - | chr1_1:58870328-58870347 | Msa0031970:intron | 35.0% | |
| !! | GTTGTGCTTATGTTTGGTTT+TGG | - | chr1_1:58870485-58870504 | Msa0031970:intron | 35.0% |
| AAATTGGTCGTATTACGTAC+CGG | - | chr1_1:58870756-58870775 | Msa0031970:CDS | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | + | chr1_1:58870792-58870811 | None:intergenic | 35.0% | |
| GTTGTCTCAAATTTGCATAG+AGG | + | chr1_1:58870952-58870971 | None:intergenic | 35.0% | |
| !! | CTCCCGATTTGTTGTTTAAA+AGG | + | chr1_1:58871037-58871056 | None:intergenic | 35.0% |
| AGTGTGTAAGTGGTTTCATT+TGG | - | chr1_1:58871232-58871251 | Msa0031970:intron | 35.0% | |
| AAGAATCGTAGATGCTATTG+AGG | + | chr1_1:58871290-58871309 | None:intergenic | 35.0% | |
| ! | ATATCTTGTTTGTGCAGAGA+TGG | + | chr1_1:58871421-58871440 | None:intergenic | 35.0% |
| AGCTCTCACAATCAAGAAAT+TGG | + | chr1_1:58869616-58869635 | None:intergenic | 35.0% | |
| TATCTTTGTACGACTTGTAC+AGG | + | chr1_1:58869727-58869746 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAAGAAAGAGACA+CGG | + | chr1_1:58869901-58869920 | None:intergenic | 35.0% |
| AAGCACAAAACTTGAAGACT+TGG | + | chr1_1:58870017-58870036 | None:intergenic | 35.0% | |
| GAACATTGCAATACATAGGT+GGG | + | chr1_1:58870306-58870325 | None:intergenic | 35.0% | |
| TGAACATTGCAATACATAGG+TGG | + | chr1_1:58870307-58870326 | None:intergenic | 35.0% | |
| TAGTATCAGGAATCAGAACT+TGG | - | chr1_1:58870328-58870347 | Msa0031970:intron | 35.0% | |
| !! | GTTGTGCTTATGTTTGGTTT+TGG | - | chr1_1:58870485-58870504 | Msa0031970:intron | 35.0% |
| AAATTGGTCGTATTACGTAC+CGG | - | chr1_1:58870756-58870775 | Msa0031970:CDS | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | + | chr1_1:58870792-58870811 | None:intergenic | 35.0% | |
| GTTGTCTCAAATTTGCATAG+AGG | + | chr1_1:58870952-58870971 | None:intergenic | 35.0% | |
| !! | CTCCCGATTTGTTGTTTAAA+AGG | + | chr1_1:58871037-58871056 | None:intergenic | 35.0% |
| AGTGTGTAAGTGGTTTCATT+TGG | - | chr1_1:58871232-58871251 | Msa0031970:intron | 35.0% | |
| AAGAATCGTAGATGCTATTG+AGG | + | chr1_1:58871290-58871309 | None:intergenic | 35.0% | |
| ! | ATATCTTGTTTGTGCAGAGA+TGG | + | chr1_1:58871421-58871440 | None:intergenic | 35.0% |
| TGGTTTGAAGAAAGAGACAC+GGG | + | chr1_1:58869900-58869919 | None:intergenic | 40.0% | |
| GGAGTTATAAGGTGAATGGT+TGG | + | chr1_1:58869920-58869939 | None:intergenic | 40.0% | |
| AGCTTTCCTGACATTGACAA+AGG | + | chr1_1:58870269-58870288 | None:intergenic | 40.0% | |
| ! | CAATGTCAGGAAAGCTTGTT+TGG | - | chr1_1:58870273-58870292 | Msa0031970:intron | 40.0% |
| ! | TCAGGAAAGCTTGTTTGGAT+GGG | - | chr1_1:58870278-58870297 | Msa0031970:intron | 40.0% |
| GACATACATGTCTTCATTGC+TGG | - | chr1_1:58870380-58870399 | Msa0031970:intron | 40.0% | |
| GTTGTTACTACTCAGTCACT+TGG | + | chr1_1:58870927-58870946 | None:intergenic | 40.0% | |
| !!! | AAGGAATTGGTTTTGCTGGA+TGG | + | chr1_1:58871204-58871223 | None:intergenic | 40.0% |
| ATCCAGCAAAACCAATTCCT+TGG | - | chr1_1:58871203-58871222 | Msa0031970:intron | 40.0% | |
| !!! | ATCCAAGGAATTGGTTTTGC+TGG | + | chr1_1:58871208-58871227 | None:intergenic | 40.0% |
| ACACTGTTGATCCAAGGAAT+TGG | + | chr1_1:58871217-58871236 | None:intergenic | 40.0% | |
| ACTTACACACTGTTGATCCA+AGG | + | chr1_1:58871223-58871242 | None:intergenic | 40.0% | |
| TTGGATCAACAGTGTGTAAG+TGG | - | chr1_1:58871222-58871241 | Msa0031970:intron | 40.0% | |
| TGGTTTGAAGAAAGAGACAC+GGG | + | chr1_1:58869900-58869919 | None:intergenic | 40.0% | |
| GGAGTTATAAGGTGAATGGT+TGG | + | chr1_1:58869920-58869939 | None:intergenic | 40.0% | |
| AGCTTTCCTGACATTGACAA+AGG | + | chr1_1:58870269-58870288 | None:intergenic | 40.0% | |
| ! | CAATGTCAGGAAAGCTTGTT+TGG | - | chr1_1:58870273-58870292 | Msa0031970:intron | 40.0% |
| ! | TCAGGAAAGCTTGTTTGGAT+GGG | - | chr1_1:58870278-58870297 | Msa0031970:intron | 40.0% |
| GACATACATGTCTTCATTGC+TGG | - | chr1_1:58870380-58870399 | Msa0031970:intron | 40.0% | |
| GTTGTTACTACTCAGTCACT+TGG | + | chr1_1:58870927-58870946 | None:intergenic | 40.0% | |
| !!! | AAGGAATTGGTTTTGCTGGA+TGG | + | chr1_1:58871204-58871223 | None:intergenic | 40.0% |
| ATCCAGCAAAACCAATTCCT+TGG | - | chr1_1:58871203-58871222 | Msa0031970:intron | 40.0% | |
| !!! | ATCCAAGGAATTGGTTTTGC+TGG | + | chr1_1:58871208-58871227 | None:intergenic | 40.0% |
| ACACTGTTGATCCAAGGAAT+TGG | + | chr1_1:58871217-58871236 | None:intergenic | 40.0% | |
| ACTTACACACTGTTGATCCA+AGG | + | chr1_1:58871223-58871242 | None:intergenic | 40.0% | |
| TTGGATCAACAGTGTGTAAG+TGG | - | chr1_1:58871222-58871241 | Msa0031970:intron | 40.0% | |
| !! | ACGGGGTTGATGTGATAAAG+CGG | + | chr1_1:58869882-58869901 | None:intergenic | 45.0% |
| GGTTTGAAGAAAGAGACACG+GGG | + | chr1_1:58869899-58869918 | None:intergenic | 45.0% | |
| ACTGTGCCTTTGTCAATGTC+AGG | - | chr1_1:58870260-58870279 | Msa0031970:intron | 45.0% | |
| ! | GTCAGGAAAGCTTGTTTGGA+TGG | - | chr1_1:58870277-58870296 | Msa0031970:intron | 45.0% |
| ! | AGGAATCAGAACTTGGCTCT+GGG | - | chr1_1:58870335-58870354 | Msa0031970:intron | 45.0% |
| !! | ATGCATAGGTACCGGTATGT+AGG | + | chr1_1:58870784-58870803 | None:intergenic | 45.0% |
| TCTTTGTGCGCATCAAACAC+CGG | - | chr1_1:58871091-58871110 | Msa0031970:intron | 45.0% | |
| CTGGCTGCTATGGTTAACAA+AGG | + | chr1_1:58871265-58871284 | None:intergenic | 45.0% | |
| TGTAACTAATAACCGTCGGC+TGG | - | chr1_1:58871341-58871360 | Msa0031970:intron | 45.0% | |
| ! | TTTGTGCAGAGATGGATTCG+TGG | + | chr1_1:58871413-58871432 | None:intergenic | 45.0% |
| !! | ACGGGGTTGATGTGATAAAG+CGG | + | chr1_1:58869882-58869901 | None:intergenic | 45.0% |
| GGTTTGAAGAAAGAGACACG+GGG | + | chr1_1:58869899-58869918 | None:intergenic | 45.0% | |
| ACTGTGCCTTTGTCAATGTC+AGG | - | chr1_1:58870260-58870279 | Msa0031970:intron | 45.0% | |
| ! | GTCAGGAAAGCTTGTTTGGA+TGG | - | chr1_1:58870277-58870296 | Msa0031970:intron | 45.0% |
| ! | AGGAATCAGAACTTGGCTCT+GGG | - | chr1_1:58870335-58870354 | Msa0031970:intron | 45.0% |
| !! | ATGCATAGGTACCGGTATGT+AGG | + | chr1_1:58870784-58870803 | None:intergenic | 45.0% |
| TCTTTGTGCGCATCAAACAC+CGG | - | chr1_1:58871091-58871110 | Msa0031970:intron | 45.0% | |
| CTGGCTGCTATGGTTAACAA+AGG | + | chr1_1:58871265-58871284 | None:intergenic | 45.0% | |
| TGTAACTAATAACCGTCGGC+TGG | - | chr1_1:58871341-58871360 | Msa0031970:intron | 45.0% | |
| ! | TTTGTGCAGAGATGGATTCG+TGG | + | chr1_1:58871413-58871432 | None:intergenic | 45.0% |
| CAGGAATCAGAACTTGGCTC+TGG | - | chr1_1:58870334-58870353 | Msa0031970:intron | 50.0% | |
| ! | ACGTACCGGTACCTACATAC+CGG | - | chr1_1:58870770-58870789 | Msa0031970:CDS | 50.0% |
| !! | AGGTACCGGTATGTAGGTAC+CGG | + | chr1_1:58870778-58870797 | None:intergenic | 50.0% |
| !! | TATTGAGGTGCTGGCTGCTA+TGG | + | chr1_1:58871275-58871294 | None:intergenic | 50.0% |
| CGTAGATGCTATTGAGGTGC+TGG | + | chr1_1:58871284-58871303 | None:intergenic | 50.0% | |
| ! | CAGAGATGGATTCGTGGATC+AGG | + | chr1_1:58871407-58871426 | None:intergenic | 50.0% |
| CAGGAATCAGAACTTGGCTC+TGG | - | chr1_1:58870334-58870353 | Msa0031970:intron | 50.0% | |
| ! | ACGTACCGGTACCTACATAC+CGG | - | chr1_1:58870770-58870789 | Msa0031970:CDS | 50.0% |
| !! | AGGTACCGGTATGTAGGTAC+CGG | + | chr1_1:58870778-58870797 | None:intergenic | 50.0% |
| !! | TATTGAGGTGCTGGCTGCTA+TGG | + | chr1_1:58871275-58871294 | None:intergenic | 50.0% |
| CGTAGATGCTATTGAGGTGC+TGG | + | chr1_1:58871284-58871303 | None:intergenic | 50.0% | |
| ! | CAGAGATGGATTCGTGGATC+AGG | + | chr1_1:58871407-58871426 | None:intergenic | 50.0% |
| TGGATGGCGATATGACGCGA+TGG | + | chr1_1:58871188-58871207 | None:intergenic | 55.0% | |
| !! | GAGTCAAAAGTGCCAGCCGA+CGG | + | chr1_1:58871356-58871375 | None:intergenic | 55.0% |
| TGGATGGCGATATGACGCGA+TGG | + | chr1_1:58871188-58871207 | None:intergenic | 55.0% | |
| !! | GAGTCAAAAGTGCCAGCCGA+CGG | + | chr1_1:58871356-58871375 | None:intergenic | 55.0% |
| GCGATATGACGCGATGGAGC+TGG | + | chr1_1:58871182-58871201 | None:intergenic | 60.0% | |
| GCGATATGACGCGATGGAGC+TGG | + | chr1_1:58871182-58871201 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58869602 | 58871446 | 58869602 | ID=Msa0031970;Name=Msa0031970 |
| chr1_1 | mRNA | 58869602 | 58871446 | 58869602 | ID=Msa0031970-mRNA-1;Parent=Msa0031970;Name=Msa0031970-mRNA-1;_AED=0.83;_eAED=1.00;_QI=0|0|0|0.25|1|1|4|0|145 |
| chr1_1 | exon | 58871443 | 58871446 | 58871443 | ID=Msa0031970-mRNA-1:exon:18056;Parent=Msa0031970-mRNA-1 |
| chr1_1 | exon | 58871072 | 58871079 | 58871072 | ID=Msa0031970-mRNA-1:exon:18055;Parent=Msa0031970-mRNA-1 |
| chr1_1 | exon | 58870647 | 58870800 | 58870647 | ID=Msa0031970-mRNA-1:exon:18054;Parent=Msa0031970-mRNA-1 |
| chr1_1 | exon | 58869602 | 58869873 | 58869602 | ID=Msa0031970-mRNA-1:exon:18053;Parent=Msa0031970-mRNA-1 |
| chr1_1 | CDS | 58871443 | 58871446 | 58871443 | ID=Msa0031970-mRNA-1:cds;Parent=Msa0031970-mRNA-1 |
| chr1_1 | CDS | 58871072 | 58871079 | 58871072 | ID=Msa0031970-mRNA-1:cds;Parent=Msa0031970-mRNA-1 |
| chr1_1 | CDS | 58870647 | 58870800 | 58870647 | ID=Msa0031970-mRNA-1:cds;Parent=Msa0031970-mRNA-1 |
| chr1_1 | CDS | 58869602 | 58869873 | 58869602 | ID=Msa0031970-mRNA-1:cds;Parent=Msa0031970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
