Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0031940 | 0.809091 | 2.245704e-50 | -8.615850e-47 |
| Msa0017120 | Msa0031940 | 0.809063 | 2.277370e-50 | -8.615850e-47 |
| Msa0024680 | Msa0031940 | 0.801623 | 8.250545e-49 | -8.615850e-47 |
| Msa0027540 | Msa0031940 | 0.809767 | 1.607748e-50 | -8.615850e-47 |
| Msa0030000 | Msa0031940 | 0.803279 | 3.760814e-49 | -8.615850e-47 |
| Msa0031940 | Msa0031970 | 0.905853 | 2.765376e-80 | -8.615850e-47 |
| Msa0031940 | Msa0044710 | 0.826040 | 3.373993e-54 | -8.615850e-47 |
| Msa0031940 | Msa0060350 | 0.803449 | 3.467286e-49 | -8.615850e-47 |
| Msa0031940 | Msa0075310 | 0.816421 | 5.578799e-52 | -8.615850e-47 |
| Msa0031940 | Msa0079250 | 0.852108 | 5.732508e-61 | -8.615850e-47 |
| Msa0031940 | Msa0091770 | 0.827597 | 1.432975e-54 | -8.615850e-47 |
| Msa0031940 | Msa0094100 | 0.802242 | 6.156985e-49 | -8.615850e-47 |
| Msa0031940 | Msa0105340 | 0.804282 | 2.328134e-49 | -8.615850e-47 |
| Msa0031940 | Msa0126900 | 0.847014 | 1.511665e-59 | -8.615850e-47 |
| Msa0031940 | Msa0143080 | 0.804895 | 1.734254e-49 | -8.615850e-47 |
| Msa0031940 | Msa0143970 | 0.814827 | 1.263327e-51 | -8.615850e-47 |
| Msa0031940 | Msa0145950 | 0.800884 | 1.168866e-48 | -8.615850e-47 |
| Msa0031940 | Msa0146020 | 0.803171 | 3.959316e-49 | -8.615850e-47 |
| Msa0031940 | Msa0164360 | 0.803369 | 3.603488e-49 | -8.615850e-47 |
| Msa0031940 | Msa0168100 | 0.814089 | 1.839817e-51 | -8.615850e-47 |
| Msa0031940 | Msa0172350 | 0.807952 | 3.931904e-50 | -8.615850e-47 |
| Msa0031940 | Msa0182930 | 0.807079 | 6.023088e-50 | -8.615850e-47 |
| Msa0031940 | Msa0183620 | 0.808161 | 3.548227e-50 | -8.615850e-47 |
| Msa0031940 | Msa0185390 | 0.815390 | 9.474118e-52 | -8.615850e-47 |
| Msa0031940 | Msa0207000 | 0.825309 | 5.027974e-54 | -8.615850e-47 |
| Msa0031940 | Msa0208520 | 0.810356 | 1.200425e-50 | -8.615850e-47 |
| Msa0031940 | Msa0208630 | 0.823118 | 1.645407e-53 | -8.615850e-47 |
| Msa0031940 | Msa0252180 | 0.834527 | 2.846381e-56 | -8.615850e-47 |
| Msa0031940 | Msa0257310 | 0.800602 | 1.334556e-48 | -8.615850e-47 |
| Msa0031940 | Msa0265820 | 0.811721 | 6.076849e-51 | -8.615850e-47 |
| Msa0031940 | Msa0267760 | 0.811211 | 7.842623e-51 | -8.615850e-47 |
| Msa0031940 | Msa0278620 | 0.831961 | 1.240283e-55 | -8.615850e-47 |
| Msa0031940 | Msa0288240 | 0.850697 | 1.435587e-60 | -8.615850e-47 |
| Msa0031940 | Msa0288330 | 0.806570 | 7.715744e-50 | -8.615850e-47 |
| Msa0031940 | Msa0296760 | 0.836038 | 1.182706e-56 | -8.615850e-47 |
| Msa0031940 | Msa0318000 | 0.827731 | 1.330278e-54 | -8.615850e-47 |
| Msa0031940 | Msa0318270 | 0.801096 | 1.057899e-48 | -8.615850e-47 |
| Msa0031940 | Msa0318310 | 0.800991 | 1.111356e-48 | -8.615850e-47 |
| Msa0031940 | Msa0326670 | 0.832055 | 1.175753e-55 | -8.615850e-47 |
| Msa0031940 | Msa0336270 | 0.800614 | 1.327001e-48 | -8.615850e-47 |
| Msa0031940 | Msa0342200 | 0.810564 | 1.082909e-50 | -8.615850e-47 |
| Msa0031940 | Msa0431430 | 0.854959 | 8.696391e-62 | -8.615850e-47 |
| Msa0031940 | Msa0480320 | 0.817263 | 3.611244e-52 | -8.615850e-47 |
| Msa0031940 | Msa0490350 | 0.809283 | 2.042943e-50 | -8.615850e-47 |
| Msa0031940 | Msa0508200 | 0.810350 | 1.203998e-50 | -8.615850e-47 |
| Msa0031940 | Msa0509970 | 0.804657 | 1.944739e-49 | -8.615850e-47 |
| Msa0031940 | Msa0510450 | 0.822290 | 2.563961e-53 | -8.615850e-47 |
| Msa0031940 | Msa0520320 | 0.805746 | 1.150407e-49 | -8.615850e-47 |
| Msa0031940 | Msa0524050 | 0.815064 | 1.119166e-51 | -8.615850e-47 |
| Msa0031940 | Msa0524120 | 0.806671 | 7.346287e-50 | -8.615850e-47 |
| Msa0031940 | Msa0526710 | 0.807864 | 4.103192e-50 | -8.615850e-47 |
| Msa0031940 | Msa0527590 | 0.808147 | 3.572065e-50 | -8.615850e-47 |
| Msa0031940 | Msa0532330 | 0.803534 | 3.329826e-49 | -8.615850e-47 |
| Msa0031940 | Msa0535030 | 0.826385 | 2.793152e-54 | -8.615850e-47 |
| Msa0031940 | Msa0535060 | 0.831929 | 1.262873e-55 | -8.615850e-47 |
| Msa0031940 | Msa0535450 | 0.810041 | 1.403742e-50 | -8.615850e-47 |
| Msa0031940 | Msa0546380 | 0.823641 | 1.241418e-53 | -8.615850e-47 |
| Msa0031940 | Msa0576420 | 0.806211 | 9.181642e-50 | -8.615850e-47 |
| Msa0031940 | Msa0583790 | 0.801429 | 9.041411e-49 | -8.615850e-47 |
| Msa0031940 | Msa0583940 | 0.832643 | 8.407019e-56 | -8.615850e-47 |
| Msa0031940 | Msa0591770 | 0.834943 | 2.236884e-56 | -8.615850e-47 |
| Msa0031940 | Msa0619330 | 0.815465 | 9.118354e-52 | -8.615850e-47 |
| Msa0031940 | Msa0642650 | 0.801561 | 8.495130e-49 | -8.615850e-47 |
| Msa0031940 | Msa0663090 | 0.803584 | 3.250913e-49 | -8.615850e-47 |
| Msa0031940 | Msa0669850 | 0.826670 | 2.388213e-54 | -8.615850e-47 |
| Msa0031940 | Msa0674220 | 0.800355 | 1.498237e-48 | -8.615850e-47 |
| Msa0031940 | Msa0681890 | 0.810293 | 1.238612e-50 | -8.615850e-47 |
| Msa0031940 | Msa0707780 | 0.801912 | 7.196430e-49 | -8.615850e-47 |
| Msa0031940 | Msa0730180 | 0.820032 | 8.498292e-53 | -8.615850e-47 |
| Msa0031940 | Msa0733000 | 0.822329 | 2.510678e-53 | -8.615850e-47 |
| Msa0031940 | Msa0754860 | 0.806854 | 6.720601e-50 | -8.615850e-47 |
| Msa0031940 | Msa0770430 | 0.801211 | 1.002206e-48 | -8.615850e-47 |
| Msa0031940 | Msa0789270 | 0.805548 | 1.265807e-49 | -8.615850e-47 |
| Msa0031940 | Msa0789280 | 0.805712 | 1.169332e-49 | -8.615850e-47 |
| Msa0031940 | Msa0797220 | 0.806859 | 6.704165e-50 | -8.615850e-47 |
| Msa0031940 | Msa0811510 | 0.803256 | 3.801915e-49 | -8.615850e-47 |
| Msa0031940 | Msa0872660 | 0.825407 | 4.767854e-54 | -8.615850e-47 |
| Msa0031940 | Msa0890250 | 0.830956 | 2.192992e-55 | -8.615850e-47 |
| Msa0031940 | Msa0907700 | 0.802329 | 5.906644e-49 | -8.615850e-47 |
| Msa0031940 | Msa0925160 | 0.825143 | 5.505430e-54 | -8.615850e-47 |
| Msa0031940 | Msa0937940 | 0.820571 | 6.394800e-53 | -8.615850e-47 |
| Msa0031940 | Msa0955260 | 0.814895 | 1.220345e-51 | -8.615850e-47 |
| Msa0031940 | Msa0971860 | 0.810731 | 9.961246e-51 | -8.615850e-47 |
| Msa0031940 | Msa0975080 | 0.815570 | 8.638319e-52 | -8.615850e-47 |
| Msa0031940 | Msa0990520 | 0.812678 | 3.757634e-51 | -8.615850e-47 |
| Msa0031940 | Msa1015060 | 0.820339 | 7.227368e-53 | -8.615850e-47 |
| Msa0031940 | Msa1038320 | 0.833039 | 6.702678e-56 | -8.615850e-47 |
| Msa0031940 | Msa1043870 | 0.802337 | 5.884926e-49 | -8.615850e-47 |
| Msa0031940 | Msa1056640 | 0.817610 | 3.016677e-52 | -8.615850e-47 |
| Msa0031940 | Msa1072460 | -0.815413 | 9.364937e-52 | -8.615850e-47 |
| Msa0031940 | Msa1089530 | 0.825700 | 4.063848e-54 | -8.615850e-47 |
| Msa0031940 | Msa1172590 | 0.804329 | 2.276474e-49 | -8.615850e-47 |
| Msa0031940 | Msa1210770 | 0.809317 | 2.008910e-50 | -8.615850e-47 |
| Msa0031940 | Msa1237030 | 0.812728 | 3.663870e-51 | -8.615850e-47 |
| Msa0031940 | Msa1262310 | 0.801235 | 9.909486e-49 | -8.615850e-47 |
| Msa0031940 | Msa1280130 | 0.819658 | 1.034694e-52 | -8.615850e-47 |
| Msa0031940 | Msa1323060 | 0.800910 | 1.154849e-48 | -8.615850e-47 |
| Msa0031940 | Msa1381130 | 0.808208 | 3.467001e-50 | -8.615850e-47 |
| Msa0031940 | Msa1385620 | 0.807563 | 4.754679e-50 | -8.615850e-47 |
| Msa0031940 | Msa1395570 | 0.802254 | 6.122175e-49 | -8.615850e-47 |
| Msa0031940 | Msa1403930 | -0.807386 | 5.184097e-50 | -8.615850e-47 |
| Msa0031940 | Msa1405770 | 0.808326 | 3.271498e-50 | -8.615850e-47 |
| Msa0031940 | Msa1412080 | 0.839876 | 1.218662e-57 | -8.615850e-47 |
| Msa0031940 | Msa1418200 | 0.809438 | 1.892217e-50 | -8.615850e-47 |
| Msa0031940 | Msa1432640 | 0.839311 | 1.709473e-57 | -8.615850e-47 |
| Msa0031940 | Msa1456810 | 0.802561 | 5.292123e-49 | -8.615850e-47 |
| Msa0031940 | Msa1458920 | 0.804428 | 2.170083e-49 | -8.615850e-47 |
| Msa0031940 | Msa1464560 | 0.812029 | 5.207504e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTACAATACTGTTCTTCT+TGG | 0.280222 | 1_1:+58829692 | None:intergenic |
| CAATGTCAGGAAAGCTTGTT+TGG | 0.329019 | 1_1:-58830745 | Msa0031940:CDS |
| GACATACATGTCTTCATTGC+TGG | 0.355168 | 1_1:-58830638 | Msa0031940:intron |
| TTGCAATGTTCAATAGTATC+AGG | 0.388193 | 1_1:-58830703 | Msa0031940:CDS |
| ACACTGTTGATCCAAGGAAT+TGG | 0.424563 | 1_1:+58829803 | None:intergenic |
| CAGAGATGGATTCGTGGATC+AGG | 0.433684 | 1_1:+58829613 | None:intergenic |
| ACTGTGCCTTTGTCAATGTC+AGG | 0.443405 | 1_1:-58830758 | Msa0031940:CDS |
| CAGGAATCAGAACTTGGCTC+TGG | 0.444827 | 1_1:-58830684 | Msa0031940:CDS |
| TATTGAGGTGCTGGCTGCTA+TGG | 0.459330 | 1_1:+58829745 | None:intergenic |
| AGTGTGTAAGTGGTTTCATT+TGG | 0.459889 | 1_1:-58829785 | Msa0031940:CDS |
| ATCCAGCAAAACCAATTCCT+TGG | 0.465680 | 1_1:-58829814 | Msa0031940:CDS |
| GTCAGGAAAGCTTGTTTGGA+TGG | 0.471241 | 1_1:-58830741 | Msa0031940:CDS |
| CGTAGATGCTATTGAGGTGC+TGG | 0.472385 | 1_1:+58829736 | None:intergenic |
| TTGGATCAACAGTGTGTAAG+TGG | 0.489013 | 1_1:-58829795 | Msa0031940:CDS |
| ATATCTTGTTTGTGCAGAGA+TGG | 0.502644 | 1_1:+58829599 | None:intergenic |
| GCGATATGACGCGATGGAGC+TGG | 0.512235 | 1_1:+58829838 | None:intergenic |
| TCAGGAAAGCTTGTTTGGAT+GGG | 0.552185 | 1_1:-58830740 | Msa0031940:CDS |
| AAGAATCGTAGATGCTATTG+AGG | 0.568594 | 1_1:+58829730 | None:intergenic |
| TAGTATCAGGAATCAGAACT+TGG | 0.570411 | 1_1:-58830690 | Msa0031940:CDS |
| TTTGTGCAGAGATGGATTCG+TGG | 0.583290 | 1_1:+58829607 | None:intergenic |
| TGAACATTGCAATACATAGG+TGG | 0.583589 | 1_1:+58830714 | None:intergenic |
| GAACATTGCAATACATAGGT+GGG | 0.586270 | 1_1:+58830715 | None:intergenic |
| TGTAACTAATAACCGTCGGC+TGG | 0.592322 | 1_1:-58829676 | Msa0031940:CDS |
| AGGAATCAGAACTTGGCTCT+GGG | 0.596621 | 1_1:-58830683 | Msa0031940:CDS |
| TATTGAACATTGCAATACAT+AGG | 0.610369 | 1_1:+58830711 | None:intergenic |
| ACTTACACACTGTTGATCCA+AGG | 0.627161 | 1_1:+58829797 | None:intergenic |
| AGCTTTCCTGACATTGACAA+AGG | 0.634619 | 1_1:+58830752 | None:intergenic |
| GAGTCAAAAGTGCCAGCCGA+CGG | 0.652825 | 1_1:+58829664 | None:intergenic |
| GTATTGTAACTAATAACCGT+CGG | 0.671596 | 1_1:-58829680 | Msa0031940:CDS |
| CTGGCTGCTATGGTTAACAA+AGG | 0.686433 | 1_1:+58829755 | None:intergenic |
| TGGATGGCGATATGACGCGA+TGG | 0.754757 | 1_1:+58829832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAAAAAATCAATG+AGG | + | chr1_1:58830695-58830714 | None:intergenic | 10.0% |
| !! | TATAAAAAAAAAAATCAATG+AGG | + | chr1_1:58830695-58830714 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAACATTTGTTG+AGG | + | chr1_1:58829661-58829680 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAATGAAGTTAC+GGG | + | chr1_1:58830735-58830754 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAAATGAAGTTA+CGG | + | chr1_1:58830736-58830755 | None:intergenic | 15.0% |
| !!! | ATTATAACTTTTTTTTGAAC+CGG | + | chr1_1:58830871-58830890 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAACATTTGTTG+AGG | + | chr1_1:58829661-58829680 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAATGAAGTTAC+GGG | + | chr1_1:58830735-58830754 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAAATGAAGTTA+CGG | + | chr1_1:58830736-58830755 | None:intergenic | 15.0% |
| !!! | ATTATAACTTTTTTTTGAAC+CGG | + | chr1_1:58830871-58830890 | None:intergenic | 15.0% |
| !!! | TACTAGTTTGTGTTATTTAA+CGG | - | chr1_1:58829828-58829847 | Msa0031940:CDS | 20.0% |
| !! | AATAACAATAACATGAAACA+AGG | + | chr1_1:58829933-58829952 | None:intergenic | 20.0% |
| !!! | CTTCTAGTTCATTTTATTTT+TGG | - | chr1_1:58830027-58830046 | Msa0031940:intron | 20.0% |
| !! | GTAATGTATCATAATTATCA+TGG | - | chr1_1:58830155-58830174 | Msa0031940:intron | 20.0% |
| !!! | ATTTTGTATACAATTTACAG+AGG | - | chr1_1:58830633-58830652 | Msa0031940:intron | 20.0% |
| !!! | CGTAACTTCATTTTTAAAAT+TGG | - | chr1_1:58830734-58830753 | Msa0031940:CDS | 20.0% |
| !! | GTTATAATATTTCATTTCTG+TGG | - | chr1_1:58830883-58830902 | Msa0031940:intron | 20.0% |
| !!! | ACGTTTTCAAAAAATATTTC+CGG | + | chr1_1:58831107-58831126 | None:intergenic | 20.0% |
| !!! | TACTAGTTTGTGTTATTTAA+CGG | - | chr1_1:58829828-58829847 | Msa0031940:CDS | 20.0% |
| !! | AATAACAATAACATGAAACA+AGG | + | chr1_1:58829933-58829952 | None:intergenic | 20.0% |
| !!! | CTTCTAGTTCATTTTATTTT+TGG | - | chr1_1:58830027-58830046 | Msa0031940:intron | 20.0% |
| !! | GTAATGTATCATAATTATCA+TGG | - | chr1_1:58830155-58830174 | Msa0031940:intron | 20.0% |
| !!! | ATTTTGTATACAATTTACAG+AGG | - | chr1_1:58830633-58830652 | Msa0031940:intron | 20.0% |
| !!! | CGTAACTTCATTTTTAAAAT+TGG | - | chr1_1:58830734-58830753 | Msa0031940:CDS | 20.0% |
| !! | GTTATAATATTTCATTTCTG+TGG | - | chr1_1:58830883-58830902 | Msa0031940:intron | 20.0% |
| !!! | ACGTTTTCAAAAAATATTTC+CGG | + | chr1_1:58831107-58831126 | None:intergenic | 20.0% |
| !!! | ATCATTTAACTTGAACATGT+AGG | + | chr1_1:58829633-58829652 | None:intergenic | 25.0% |
| !!! | ACTAGTTTGTGTTATTTAAC+GGG | - | chr1_1:58829829-58829848 | Msa0031940:CDS | 25.0% |
| !!! | CTAGTTCATTTTATTTTTGG+TGG | - | chr1_1:58830030-58830049 | Msa0031940:intron | 25.0% |
| !!! | GTTATTTCTAGTTTTCAAAG+AGG | + | chr1_1:58830200-58830219 | None:intergenic | 25.0% |
| ! | TATTGAACATTGCAATACAT+AGG | + | chr1_1:58830303-58830322 | None:intergenic | 25.0% |
| ! | TAATTAAGAATCTGCAAACA+TGG | + | chr1_1:58830431-58830450 | None:intergenic | 25.0% |
| ! | TCAATATGTTACGTAAAAAG+AGG | + | chr1_1:58830539-58830558 | None:intergenic | 25.0% |
| !!! | ATTGACCTTTACACATTTTT+TGG | - | chr1_1:58830554-58830573 | Msa0031940:intron | 25.0% |
| !!! | TTGACCTTTACACATTTTTT+GGG | - | chr1_1:58830555-58830574 | Msa0031940:intron | 25.0% |
| !!! | TAAGGATTTTCTTCTAGTTA+AGG | + | chr1_1:58830596-58830615 | None:intergenic | 25.0% |
| !! | AACTTTTATCTATGATGCAT+AGG | + | chr1_1:58830792-58830811 | None:intergenic | 25.0% |
| !! | TATCATAACTTGAAAGCATA+TGG | + | chr1_1:58830845-58830864 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTATGATATTTC+CGG | - | chr1_1:58830849-58830868 | Msa0031940:intron | 25.0% |
| !! | CAACCTTTTAAACAACAAAT+CGG | - | chr1_1:58831025-58831044 | Msa0031940:intron | 25.0% |
| !! | AACCTTTTAAACAACAAATC+GGG | - | chr1_1:58831026-58831045 | Msa0031940:intron | 25.0% |
| !!! | ATCATTTAACTTGAACATGT+AGG | + | chr1_1:58829633-58829652 | None:intergenic | 25.0% |
| !!! | ACTAGTTTGTGTTATTTAAC+GGG | - | chr1_1:58829829-58829848 | Msa0031940:CDS | 25.0% |
| !!! | CTAGTTCATTTTATTTTTGG+TGG | - | chr1_1:58830030-58830049 | Msa0031940:intron | 25.0% |
| !!! | GTTATTTCTAGTTTTCAAAG+AGG | + | chr1_1:58830200-58830219 | None:intergenic | 25.0% |
| ! | TATTGAACATTGCAATACAT+AGG | + | chr1_1:58830303-58830322 | None:intergenic | 25.0% |
| ! | TAATTAAGAATCTGCAAACA+TGG | + | chr1_1:58830431-58830450 | None:intergenic | 25.0% |
| ! | TCAATATGTTACGTAAAAAG+AGG | + | chr1_1:58830539-58830558 | None:intergenic | 25.0% |
| !!! | ATTGACCTTTACACATTTTT+TGG | - | chr1_1:58830554-58830573 | Msa0031940:intron | 25.0% |
| !!! | TTGACCTTTACACATTTTTT+GGG | - | chr1_1:58830555-58830574 | Msa0031940:intron | 25.0% |
| !!! | TAAGGATTTTCTTCTAGTTA+AGG | + | chr1_1:58830596-58830615 | None:intergenic | 25.0% |
| !! | AACTTTTATCTATGATGCAT+AGG | + | chr1_1:58830792-58830811 | None:intergenic | 25.0% |
| !! | TATCATAACTTGAAAGCATA+TGG | + | chr1_1:58830845-58830864 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTATGATATTTC+CGG | - | chr1_1:58830849-58830868 | Msa0031940:intron | 25.0% |
| !! | CAACCTTTTAAACAACAAAT+CGG | - | chr1_1:58831025-58831044 | Msa0031940:intron | 25.0% |
| !! | AACCTTTTAAACAACAAATC+GGG | - | chr1_1:58831026-58831045 | Msa0031940:intron | 25.0% |
| CAGCAAAATTTATTGAAACG+CGG | - | chr1_1:58829689-58829708 | Msa0031940:CDS | 30.0% | |
| ACATGAAACAAGGAGTTATA+AGG | + | chr1_1:58829923-58829942 | None:intergenic | 30.0% | |
| ATAAAAAATCACAAGGTAGC+AGG | + | chr1_1:58830104-58830123 | None:intergenic | 30.0% | |
| !!! | CTACCTTGTGATTTTTTATC+AGG | - | chr1_1:58830105-58830124 | Msa0031940:intron | 30.0% |
| ACACCTGATAAAAAATCACA+AGG | + | chr1_1:58830111-58830130 | None:intergenic | 30.0% | |
| ! | CATTGTAACTTGCATGTTTA+AGG | - | chr1_1:58830219-58830238 | Msa0031940:intron | 30.0% |
| TTGCAATGTTCAATAGTATC+AGG | - | chr1_1:58830308-58830327 | Msa0031940:intron | 30.0% | |
| !!! | TCTGGGTAAAATTTTGACTA+TGG | - | chr1_1:58830345-58830364 | Msa0031940:intron | 30.0% |
| TGCAGATTCTTAATTAACTC+CGG | - | chr1_1:58830435-58830454 | Msa0031940:intron | 30.0% | |
| AACATGTCAACTTACAAAAC+CGG | + | chr1_1:58830457-58830476 | None:intergenic | 30.0% | |
| !! | ATGTTTGTTGTGCTTATGTT+TGG | - | chr1_1:58830472-58830491 | Msa0031940:intron | 30.0% |
| TAAGCCCAAAAAATGTGTAA+AGG | + | chr1_1:58830562-58830581 | None:intergenic | 30.0% | |
| !!! | TCTCACTTTTTTCATTGCTA+AGG | + | chr1_1:58830614-58830633 | None:intergenic | 30.0% |
| GAGATGCTAGTTAAGAATTA+GGG | + | chr1_1:58830661-58830680 | None:intergenic | 30.0% | |
| TGAGATGCTAGTTAAGAATT+AGG | + | chr1_1:58830662-58830681 | None:intergenic | 30.0% | |
| GTTAGTTCATTCTGATGATA+AGG | - | chr1_1:58831057-58831076 | Msa0031940:intron | 30.0% | |
| ! | GGCTAACTTACTTGTTAATA+TGG | + | chr1_1:58831155-58831174 | None:intergenic | 30.0% |
| AGTTACAATACTGTTCTTCT+TGG | + | chr1_1:58831322-58831341 | None:intergenic | 30.0% | |
| GTATTGTAACTAATAACCGT+CGG | - | chr1_1:58831331-58831350 | Msa0031940:intron | 30.0% | |
| CAGCAAAATTTATTGAAACG+CGG | - | chr1_1:58829689-58829708 | Msa0031940:CDS | 30.0% | |
| ACATGAAACAAGGAGTTATA+AGG | + | chr1_1:58829923-58829942 | None:intergenic | 30.0% | |
| ATAAAAAATCACAAGGTAGC+AGG | + | chr1_1:58830104-58830123 | None:intergenic | 30.0% | |
| !!! | CTACCTTGTGATTTTTTATC+AGG | - | chr1_1:58830105-58830124 | Msa0031940:intron | 30.0% |
| ACACCTGATAAAAAATCACA+AGG | + | chr1_1:58830111-58830130 | None:intergenic | 30.0% | |
| ! | CATTGTAACTTGCATGTTTA+AGG | - | chr1_1:58830219-58830238 | Msa0031940:intron | 30.0% |
| TTGCAATGTTCAATAGTATC+AGG | - | chr1_1:58830308-58830327 | Msa0031940:intron | 30.0% | |
| !!! | TCTGGGTAAAATTTTGACTA+TGG | - | chr1_1:58830345-58830364 | Msa0031940:intron | 30.0% |
| TGCAGATTCTTAATTAACTC+CGG | - | chr1_1:58830435-58830454 | Msa0031940:intron | 30.0% | |
| AACATGTCAACTTACAAAAC+CGG | + | chr1_1:58830457-58830476 | None:intergenic | 30.0% | |
| !! | ATGTTTGTTGTGCTTATGTT+TGG | - | chr1_1:58830472-58830491 | Msa0031940:intron | 30.0% |
| TAAGCCCAAAAAATGTGTAA+AGG | + | chr1_1:58830562-58830581 | None:intergenic | 30.0% | |
| !!! | TCTCACTTTTTTCATTGCTA+AGG | + | chr1_1:58830614-58830633 | None:intergenic | 30.0% |
| GAGATGCTAGTTAAGAATTA+GGG | + | chr1_1:58830661-58830680 | None:intergenic | 30.0% | |
| TGAGATGCTAGTTAAGAATT+AGG | + | chr1_1:58830662-58830681 | None:intergenic | 30.0% | |
| GTTAGTTCATTCTGATGATA+AGG | - | chr1_1:58831057-58831076 | Msa0031940:intron | 30.0% | |
| ! | GGCTAACTTACTTGTTAATA+TGG | + | chr1_1:58831155-58831174 | None:intergenic | 30.0% |
| AGTTACAATACTGTTCTTCT+TGG | + | chr1_1:58831322-58831341 | None:intergenic | 30.0% | |
| GTATTGTAACTAATAACCGT+CGG | - | chr1_1:58831331-58831350 | Msa0031940:intron | 30.0% | |
| AGCTCTCACAATCAAGAAAT+TGG | + | chr1_1:58829607-58829626 | None:intergenic | 35.0% | |
| TATCTTTGTACGACTTGTAC+AGG | + | chr1_1:58829717-58829736 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAAGAAAGAGACA+CGG | + | chr1_1:58829893-58829912 | None:intergenic | 35.0% |
| ACAAGGAGTTATAAGGTGAA+TGG | + | chr1_1:58829916-58829935 | None:intergenic | 35.0% | |
| AAGCACAAAACTTGAAGACT+TGG | + | chr1_1:58830010-58830029 | None:intergenic | 35.0% | |
| GAACATTGCAATACATAGGT+GGG | + | chr1_1:58830299-58830318 | None:intergenic | 35.0% | |
| TGAACATTGCAATACATAGG+TGG | + | chr1_1:58830300-58830319 | None:intergenic | 35.0% | |
| TAGTATCAGGAATCAGAACT+TGG | - | chr1_1:58830321-58830340 | Msa0031940:intron | 35.0% | |
| !! | GTTGTGCTTATGTTTGGTTT+TGG | - | chr1_1:58830478-58830497 | Msa0031940:intron | 35.0% |
| AAATTGGTCGTATTACGTAC+CGG | - | chr1_1:58830750-58830769 | Msa0031940:CDS | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | + | chr1_1:58830786-58830805 | None:intergenic | 35.0% | |
| GTTGTCTCAAATTTGCATAG+AGG | + | chr1_1:58830946-58830965 | None:intergenic | 35.0% | |
| !! | CTCCCGATTTGTTGTTTAAA+AGG | + | chr1_1:58831031-58831050 | None:intergenic | 35.0% |
| AGTGTGTAAGTGGTTTCATT+TGG | - | chr1_1:58831226-58831245 | Msa0031940:intron | 35.0% | |
| AAGAATCGTAGATGCTATTG+AGG | + | chr1_1:58831284-58831303 | None:intergenic | 35.0% | |
| ! | ATATCTTGTTTGTGCAGAGA+TGG | + | chr1_1:58831415-58831434 | None:intergenic | 35.0% |
| AGCTCTCACAATCAAGAAAT+TGG | + | chr1_1:58829607-58829626 | None:intergenic | 35.0% | |
| TATCTTTGTACGACTTGTAC+AGG | + | chr1_1:58829717-58829736 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAAGAAAGAGACA+CGG | + | chr1_1:58829893-58829912 | None:intergenic | 35.0% |
| ACAAGGAGTTATAAGGTGAA+TGG | + | chr1_1:58829916-58829935 | None:intergenic | 35.0% | |
| AAGCACAAAACTTGAAGACT+TGG | + | chr1_1:58830010-58830029 | None:intergenic | 35.0% | |
| GAACATTGCAATACATAGGT+GGG | + | chr1_1:58830299-58830318 | None:intergenic | 35.0% | |
| TGAACATTGCAATACATAGG+TGG | + | chr1_1:58830300-58830319 | None:intergenic | 35.0% | |
| TAGTATCAGGAATCAGAACT+TGG | - | chr1_1:58830321-58830340 | Msa0031940:intron | 35.0% | |
| !! | GTTGTGCTTATGTTTGGTTT+TGG | - | chr1_1:58830478-58830497 | Msa0031940:intron | 35.0% |
| AAATTGGTCGTATTACGTAC+CGG | - | chr1_1:58830750-58830769 | Msa0031940:CDS | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | + | chr1_1:58830786-58830805 | None:intergenic | 35.0% | |
| GTTGTCTCAAATTTGCATAG+AGG | + | chr1_1:58830946-58830965 | None:intergenic | 35.0% | |
| !! | CTCCCGATTTGTTGTTTAAA+AGG | + | chr1_1:58831031-58831050 | None:intergenic | 35.0% |
| AGTGTGTAAGTGGTTTCATT+TGG | - | chr1_1:58831226-58831245 | Msa0031940:intron | 35.0% | |
| AAGAATCGTAGATGCTATTG+AGG | + | chr1_1:58831284-58831303 | None:intergenic | 35.0% | |
| ! | ATATCTTGTTTGTGCAGAGA+TGG | + | chr1_1:58831415-58831434 | None:intergenic | 35.0% |
| TGGTTTGAAGAAAGAGACAC+GGG | + | chr1_1:58829892-58829911 | None:intergenic | 40.0% | |
| GGAGTTATAAGGTGAATGGT+TGG | + | chr1_1:58829912-58829931 | None:intergenic | 40.0% | |
| AGCTTTCCTGACATTGACAA+AGG | + | chr1_1:58830262-58830281 | None:intergenic | 40.0% | |
| ! | CAATGTCAGGAAAGCTTGTT+TGG | - | chr1_1:58830266-58830285 | Msa0031940:intron | 40.0% |
| ! | TCAGGAAAGCTTGTTTGGAT+GGG | - | chr1_1:58830271-58830290 | Msa0031940:intron | 40.0% |
| GACATACATGTCTTCATTGC+TGG | - | chr1_1:58830373-58830392 | Msa0031940:intron | 40.0% | |
| GTTGTTACTACTCAGTCACT+TGG | + | chr1_1:58830921-58830940 | None:intergenic | 40.0% | |
| !!! | AAGGAATTGGTTTTGCTGGA+TGG | + | chr1_1:58831198-58831217 | None:intergenic | 40.0% |
| ATCCAGCAAAACCAATTCCT+TGG | - | chr1_1:58831197-58831216 | Msa0031940:intron | 40.0% | |
| !!! | ATCCAAGGAATTGGTTTTGC+TGG | + | chr1_1:58831202-58831221 | None:intergenic | 40.0% |
| ACACTGTTGATCCAAGGAAT+TGG | + | chr1_1:58831211-58831230 | None:intergenic | 40.0% | |
| ACTTACACACTGTTGATCCA+AGG | + | chr1_1:58831217-58831236 | None:intergenic | 40.0% | |
| TTGGATCAACAGTGTGTAAG+TGG | - | chr1_1:58831216-58831235 | Msa0031940:intron | 40.0% | |
| TGGTTTGAAGAAAGAGACAC+GGG | + | chr1_1:58829892-58829911 | None:intergenic | 40.0% | |
| GGAGTTATAAGGTGAATGGT+TGG | + | chr1_1:58829912-58829931 | None:intergenic | 40.0% | |
| AGCTTTCCTGACATTGACAA+AGG | + | chr1_1:58830262-58830281 | None:intergenic | 40.0% | |
| ! | CAATGTCAGGAAAGCTTGTT+TGG | - | chr1_1:58830266-58830285 | Msa0031940:intron | 40.0% |
| ! | TCAGGAAAGCTTGTTTGGAT+GGG | - | chr1_1:58830271-58830290 | Msa0031940:intron | 40.0% |
| GACATACATGTCTTCATTGC+TGG | - | chr1_1:58830373-58830392 | Msa0031940:intron | 40.0% | |
| GTTGTTACTACTCAGTCACT+TGG | + | chr1_1:58830921-58830940 | None:intergenic | 40.0% | |
| !!! | AAGGAATTGGTTTTGCTGGA+TGG | + | chr1_1:58831198-58831217 | None:intergenic | 40.0% |
| ATCCAGCAAAACCAATTCCT+TGG | - | chr1_1:58831197-58831216 | Msa0031940:intron | 40.0% | |
| !!! | ATCCAAGGAATTGGTTTTGC+TGG | + | chr1_1:58831202-58831221 | None:intergenic | 40.0% |
| ACACTGTTGATCCAAGGAAT+TGG | + | chr1_1:58831211-58831230 | None:intergenic | 40.0% | |
| ACTTACACACTGTTGATCCA+AGG | + | chr1_1:58831217-58831236 | None:intergenic | 40.0% | |
| TTGGATCAACAGTGTGTAAG+TGG | - | chr1_1:58831216-58831235 | Msa0031940:intron | 40.0% | |
| !! | ACGGGGTTGATGTGATAAAG+CGG | + | chr1_1:58829874-58829893 | None:intergenic | 45.0% |
| GGTTTGAAGAAAGAGACACG+GGG | + | chr1_1:58829891-58829910 | None:intergenic | 45.0% | |
| ACTGTGCCTTTGTCAATGTC+AGG | - | chr1_1:58830253-58830272 | Msa0031940:intron | 45.0% | |
| ! | GTCAGGAAAGCTTGTTTGGA+TGG | - | chr1_1:58830270-58830289 | Msa0031940:intron | 45.0% |
| ! | AGGAATCAGAACTTGGCTCT+GGG | - | chr1_1:58830328-58830347 | Msa0031940:intron | 45.0% |
| !! | ATGCATAGGTACCGGTATGT+AGG | + | chr1_1:58830778-58830797 | None:intergenic | 45.0% |
| TCTTTGTGCGCATCAAACAC+CGG | - | chr1_1:58831085-58831104 | Msa0031940:intron | 45.0% | |
| CTGGCTGCTATGGTTAACAA+AGG | + | chr1_1:58831259-58831278 | None:intergenic | 45.0% | |
| TGTAACTAATAACCGTCGGC+TGG | - | chr1_1:58831335-58831354 | Msa0031940:intron | 45.0% | |
| ! | TTTGTGCAGAGATGGATTCG+TGG | + | chr1_1:58831407-58831426 | None:intergenic | 45.0% |
| !! | ACGGGGTTGATGTGATAAAG+CGG | + | chr1_1:58829874-58829893 | None:intergenic | 45.0% |
| GGTTTGAAGAAAGAGACACG+GGG | + | chr1_1:58829891-58829910 | None:intergenic | 45.0% | |
| ACTGTGCCTTTGTCAATGTC+AGG | - | chr1_1:58830253-58830272 | Msa0031940:intron | 45.0% | |
| ! | GTCAGGAAAGCTTGTTTGGA+TGG | - | chr1_1:58830270-58830289 | Msa0031940:intron | 45.0% |
| ! | AGGAATCAGAACTTGGCTCT+GGG | - | chr1_1:58830328-58830347 | Msa0031940:intron | 45.0% |
| !! | ATGCATAGGTACCGGTATGT+AGG | + | chr1_1:58830778-58830797 | None:intergenic | 45.0% |
| TCTTTGTGCGCATCAAACAC+CGG | - | chr1_1:58831085-58831104 | Msa0031940:intron | 45.0% | |
| CTGGCTGCTATGGTTAACAA+AGG | + | chr1_1:58831259-58831278 | None:intergenic | 45.0% | |
| TGTAACTAATAACCGTCGGC+TGG | - | chr1_1:58831335-58831354 | Msa0031940:intron | 45.0% | |
| ! | TTTGTGCAGAGATGGATTCG+TGG | + | chr1_1:58831407-58831426 | None:intergenic | 45.0% |
| CAGGAATCAGAACTTGGCTC+TGG | - | chr1_1:58830327-58830346 | Msa0031940:intron | 50.0% | |
| ! | ACGTACCGGTACCTACATAC+CGG | - | chr1_1:58830764-58830783 | Msa0031940:CDS | 50.0% |
| !! | AGGTACCGGTATGTAGGTAC+CGG | + | chr1_1:58830772-58830791 | None:intergenic | 50.0% |
| !! | TATTGAGGTGCTGGCTGCTA+TGG | + | chr1_1:58831269-58831288 | None:intergenic | 50.0% |
| CGTAGATGCTATTGAGGTGC+TGG | + | chr1_1:58831278-58831297 | None:intergenic | 50.0% | |
| ! | CAGAGATGGATTCGTGGATC+AGG | + | chr1_1:58831401-58831420 | None:intergenic | 50.0% |
| CAGGAATCAGAACTTGGCTC+TGG | - | chr1_1:58830327-58830346 | Msa0031940:intron | 50.0% | |
| ! | ACGTACCGGTACCTACATAC+CGG | - | chr1_1:58830764-58830783 | Msa0031940:CDS | 50.0% |
| !! | AGGTACCGGTATGTAGGTAC+CGG | + | chr1_1:58830772-58830791 | None:intergenic | 50.0% |
| !! | TATTGAGGTGCTGGCTGCTA+TGG | + | chr1_1:58831269-58831288 | None:intergenic | 50.0% |
| CGTAGATGCTATTGAGGTGC+TGG | + | chr1_1:58831278-58831297 | None:intergenic | 50.0% | |
| ! | CAGAGATGGATTCGTGGATC+AGG | + | chr1_1:58831401-58831420 | None:intergenic | 50.0% |
| TGGATGGCGATATGACGCGA+TGG | + | chr1_1:58831182-58831201 | None:intergenic | 55.0% | |
| !! | GAGTCAAAAGTGCCAGCCGA+CGG | + | chr1_1:58831350-58831369 | None:intergenic | 55.0% |
| TGGATGGCGATATGACGCGA+TGG | + | chr1_1:58831182-58831201 | None:intergenic | 55.0% | |
| !! | GAGTCAAAAGTGCCAGCCGA+CGG | + | chr1_1:58831350-58831369 | None:intergenic | 55.0% |
| GCGATATGACGCGATGGAGC+TGG | + | chr1_1:58831176-58831195 | None:intergenic | 60.0% | |
| GCGATATGACGCGATGGAGC+TGG | + | chr1_1:58831176-58831195 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58829593 | 58831440 | 58829593 | ID=Msa0031940;Name=Msa0031940 |
| chr1_1 | mRNA | 58829593 | 58831440 | 58829593 | ID=Msa0031940-mRNA-1;Parent=Msa0031940;Name=Msa0031940-mRNA-1;_AED=0.83;_eAED=1.00;_QI=0|0|0|0.25|1|1|4|0|145 |
| chr1_1 | exon | 58831437 | 58831440 | 58831437 | ID=Msa0031940-mRNA-1:exon:18052;Parent=Msa0031940-mRNA-1 |
| chr1_1 | exon | 58831064 | 58831071 | 58831064 | ID=Msa0031940-mRNA-1:exon:18051;Parent=Msa0031940-mRNA-1 |
| chr1_1 | exon | 58830639 | 58830792 | 58830639 | ID=Msa0031940-mRNA-1:exon:18050;Parent=Msa0031940-mRNA-1 |
| chr1_1 | exon | 58829593 | 58829864 | 58829593 | ID=Msa0031940-mRNA-1:exon:18049;Parent=Msa0031940-mRNA-1 |
| chr1_1 | CDS | 58831437 | 58831440 | 58831437 | ID=Msa0031940-mRNA-1:cds;Parent=Msa0031940-mRNA-1 |
| chr1_1 | CDS | 58831064 | 58831071 | 58831064 | ID=Msa0031940-mRNA-1:cds;Parent=Msa0031940-mRNA-1 |
| chr1_1 | CDS | 58830639 | 58830792 | 58830639 | ID=Msa0031940-mRNA-1:cds;Parent=Msa0031940-mRNA-1 |
| chr1_1 | CDS | 58829593 | 58829864 | 58829593 | ID=Msa0031940-mRNA-1:cds;Parent=Msa0031940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
