AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032530 MtrunA17_Chr1g0192541 99.812 533 1 0 1 533 1 533 0.0 1098
Msa0032530 MtrunA17_Chr7g0271871 88.722 532 60 0 1 532 1 532 0.0 987
Msa0032530 MtrunA17_Chr2g0294881 86.278 532 69 3 1 531 1 529 0.0 943
Msa0032530 MtrunA17_Chr4g0068051 73.655 539 123 6 1 531 1 528 0.0 791
Msa0032530 MtrunA17_Chr4g0074371 80.751 426 82 0 79 504 1 426 0.0 732
Msa0032530 MtrunA17_Chr4g0075701 73.363 443 114 3 70 511 3 442 0.0 669
Msa0032530 MtrunA17_Chr4g0075701 22.712 295 169 7 69 346 171 423 8.24e-11 64.3
Msa0032530 MtrunA17_Chr4g0075691 75.587 426 103 1 83 507 2 427 0.0 651
Msa0032530 MtrunA17_Chr8g0346871 73.821 424 110 1 110 533 15 437 0.0 641
Msa0032530 MtrunA17_Chr4g0074081 69.481 462 103 3 79 504 1 460 0.0 629
Msa0032530 MtrunA17_Chr1g0174791 75.000 300 72 3 208 504 1 300 2.95e-155 445
Msa0032530 MtrunA17_Chr1g0174791 26.047 215 145 6 108 314 30 238 9.27e-11 63.2
Msa0032530 MtrunA17_Chr7g0271821 45.389 553 245 13 1 499 1 550 4.54e-142 421
Msa0032530 MtrunA17_Chr7g0272761 45.473 497 231 12 14 496 15 485 2.70e-118 358
Msa0032530 MtrunA17_Chr7g0271831 48.687 419 190 9 85 499 7 404 5.60e-113 341
Msa0032530 MtrunA17_Chr4g0004921 62.774 274 52 4 261 532 1 226 5.98e-109 324
Msa0032530 MtrunA17_Chr4g0071961 77.027 148 34 0 364 511 2 149 3.96e-75 237
Msa0032530 MtrunA17_Chr4g0075651 78.723 141 30 0 366 506 8 148 2.12e-73 229
Msa0032530 MtrunA17_Chr1g0181541 29.231 520 319 14 14 499 10 514 3.89e-52 185
Msa0032530 MtrunA17_Chr4g0075601 60.284 141 43 1 364 491 1 141 6.41e-51 171
Msa0032530 MtrunA17_Chr4g0004931 59.722 144 44 1 110 253 11 140 4.59e-48 163
Msa0032530 MtrunA17_Chr4g0075621 69.307 101 31 0 79 179 1 101 3.53e-43 149
Msa0032530 MtrunA17_Chr4g0071971 73.077 104 27 1 263 365 10 113 7.59e-42 147
Msa0032530 MtrunA17_Chr4g0071981 65.854 82 24 1 83 160 2 83 7.62e-28 107
Msa0032530 MtrunA17_Chr4g0075641 43.537 147 28 2 276 367 2 148 7.45e-25 100
Msa0032530 MtrunA17_Chr4g0075631 82.353 51 9 0 219 269 1 51 5.06e-23 92.0
Msa0032530 MtrunA17_Chr4g0069541 66.667 60 20 0 322 381 55 114 2.50e-20 88.2
Msa0032530 MtrunA17_Chr1g0174801 86.667 30 4 0 135 164 40 69 1.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032530 AT3G06720.1 82.836 536 84 6 1 532 1 532 0.0 897
Msa0032530 AT3G06720.2 82.836 536 84 6 1 532 1 532 0.0 897
Msa0032530 AT4G16143.2 82.463 536 87 2 1 531 1 534 0.0 894
Msa0032530 AT4G16143.1 82.463 536 87 2 1 531 1 534 0.0 894
Msa0032530 AT1G09270.2 74.677 541 123 5 1 531 1 537 0.0 797
Msa0032530 AT1G09270.1 74.677 541 123 5 1 531 1 537 0.0 797
Msa0032530 AT1G02690.1 70.718 543 141 5 1 531 1 537 0.0 785
Msa0032530 AT1G02690.2 70.588 544 141 6 1 531 1 538 0.0 781
Msa0032530 AT4G02150.1 70.795 541 137 5 1 531 1 530 0.0 773
Msa0032530 AT1G09270.3 78.947 456 91 3 79 531 2 455 0.0 716
Msa0032530 AT5G49310.1 65.868 501 164 3 1 501 1 494 0.0 655
Msa0032530 AT3G05720.1 64.300 493 157 4 13 497 9 490 0.0 620
Msa0032530 AT3G05720.2 64.300 493 157 4 13 497 9 490 0.0 620
Msa0032530 AT4G02150.2 71.463 417 102 3 1 408 1 409 0.0 610
Msa0032530 AT5G52000.1 54.762 420 177 6 79 497 14 421 1.40e-145 426
Msa0032530 AT5G49305.5 40.183 438 197 11 78 506 2 383 7.35e-86 271
Msa0032530 AT5G49305.3 40.183 438 197 11 78 506 2 383 7.35e-86 271
Msa0032530 AT5G49305.4 40.183 438 197 11 78 506 2 383 7.35e-86 271
Msa0032530 AT5G49305.1 40.183 438 197 11 78 506 2 383 7.35e-86 271
Msa0032530 AT5G49305.2 40.183 438 197 11 78 506 2 383 7.35e-86 271
Msa0032530 AT1G32880.1 61.224 147 52 3 363 507 40 183 9.98e-55 182
Msa0032530 AT5G03070.1 28.298 523 320 14 14 499 10 514 2.50e-47 172

Find 185 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTAACCATTCATTTA+TGG 0.082234 1_1:-59716823 None:intergenic
AAACTTTCATCGACGAAAAT+AGG 0.156375 1_1:-59722365 None:intergenic
CGGGGCTTTGGTTCCTCTTT+TGG 0.163040 1_1:+59718762 Msa0032530:CDS
GTTACGATTGTGGGTCTATT+TGG 0.232502 1_1:+59722226 Msa0032530:three_prime_UTR
GTGATCGAGGCCAATATATT+TGG 0.282098 1_1:+59721161 Msa0032530:CDS
CTTGGTTATATGTAATAGTT+TGG 0.282901 1_1:+59722175 Msa0032530:three_prime_UTR
TGAGGTTCCTTCTGTGCCTT+CGG 0.302539 1_1:+59721722 Msa0032530:CDS
CCCAGCTGTAATGTTTGATA+TGG 0.317154 1_1:-59721014 None:intergenic
CCTGCACTTCCTGCTCTTGC+TGG 0.324162 1_1:+59719415 Msa0032530:CDS
TCCTGTATGATGGGACAAGC+TGG 0.327403 1_1:+59721942 Msa0032530:three_prime_UTR
AAATAGGGACACTGGATATA+TGG 0.330170 1_1:-59722349 None:intergenic
TGTTCTCGGTCACGGGGCTT+TGG 0.338208 1_1:+59718750 Msa0032530:CDS
TGTTGCAGTTTGAGGCAGCC+TGG 0.340818 1_1:+59718359 Msa0032530:intron
GTCGTTTCTTTGTGTCCAAC+AGG 0.345917 1_1:+59721979 Msa0032530:three_prime_UTR
TTGCAGGCTGTGTGGGCATT+AGG 0.348382 1_1:+59718691 Msa0032530:intron
GAGGTTCCTTCTGTGCCTTC+GGG 0.355241 1_1:+59721723 Msa0032530:CDS
GAGAACAAGATCACGACATC+TGG 0.355494 1_1:-59718734 None:intergenic
GGACACTTTCAAACTTCTGC+AGG 0.363703 1_1:+59718833 Msa0032530:CDS
CCTCAGCATCATCAATCATC+TGG 0.369585 1_1:-59721548 None:intergenic
GTTGCGACGGACCTCGGTCC+TGG 0.372521 1_1:-59717059 None:intergenic
CCAGGCGATGCTTCTCAATC+AGG 0.373845 1_1:+59721681 Msa0032530:CDS
ATTGGTAAATAGAGTGTTGC+TGG 0.374330 1_1:+59722009 Msa0032530:three_prime_UTR
TAATACACCCTTGACTTACT+AGG 0.382527 1_1:-59721392 None:intergenic
TGGAGACTATACTGCTCTAT+TGG 0.384488 1_1:-59716970 None:intergenic
TCGGTCCTGGAGTTTGCGTT+TGG 0.385924 1_1:-59717046 None:intergenic
GCATCAAGAAGGAAGCTTGC+TGG 0.387204 1_1:+59720990 Msa0032530:CDS
TGGGAATAAACAGCAGATTC+AGG 0.391086 1_1:+59721033 Msa0032530:CDS
GTGATCTTGTTCTCGGTCAC+GGG 0.391108 1_1:+59718743 Msa0032530:CDS
ACGGCGACGGCGGCCTTCTT+CGG 0.399895 1_1:-59717104 None:intergenic
GTTGGAACATTTGCCAACTA+TGG 0.400235 1_1:+59717452 Msa0032530:intron
TAGGATTGTGACAGTTTGTC+TGG 0.404102 1_1:+59721449 Msa0032530:CDS
GGAAGACTTTCCGCAGTTGC+AGG 0.411485 1_1:+59717720 Msa0032530:CDS
AGATGTCGTGATCTTGTTCT+CGG 0.411575 1_1:+59718736 Msa0032530:CDS
CTCTAACGTCGTTGAGAAGA+AGG 0.413914 1_1:+59717228 Msa0032530:CDS
CACCAGAGGACCAAATATAT+TGG 0.421774 1_1:-59721171 None:intergenic
AACTTTATATAATACAAAAT+AGG 0.421972 1_1:-59722408 None:intergenic
GGATTGGCTTGGGCAATGCT+TGG 0.424796 1_1:+59722030 Msa0032530:three_prime_UTR
GGCCAATATATTTGGTCCTC+TGG 0.429004 1_1:+59721169 Msa0032530:CDS
AACTTTCATCGACGAAAATA+GGG 0.430049 1_1:-59722364 None:intergenic
TTTCGAAAGCTGCTATCAAT+TGG 0.433330 1_1:+59717528 Msa0032530:CDS
TGAAGATTCTTGAGACATAC+TGG 0.434618 1_1:+59721631 Msa0032530:CDS
ATAATGAATAACTGAACTCT+AGG 0.436920 1_1:-59722321 None:intergenic
CAATAGAAGCTCAACAAGTC+GGG 0.443446 1_1:-59719551 None:intergenic
AATCGTAACTAAAACTTAAG+TGG 0.446315 1_1:-59722212 None:intergenic
TATCAAGAAAGAGGCTGCTT+GGG 0.447132 1_1:+59721220 Msa0032530:CDS
AGTAGATGTTCATGCTTCAA+TGG 0.450475 1_1:+59721763 Msa0032530:exon
CGTGATCTTGTTCTCGGTCA+CGG 0.451391 1_1:+59718742 Msa0032530:CDS
AAGTCTTGACTGATGCCTGC+TGG 0.451595 1_1:+59719461 Msa0032530:CDS
GTAGATGTTCATGCTTCAAT+GGG 0.453724 1_1:+59721764 Msa0032530:exon
TCTCTTCACGACGATTCTTA+CGG 0.453848 1_1:-59717147 None:intergenic
ATTCCTGCTCTTCGTACTGT+TGG 0.456615 1_1:+59719709 Msa0032530:CDS
CCAGCAAGAGCAGGAAGTGC+AGG 0.456751 1_1:-59719415 None:intergenic
TAGTGACGATGTCCGTGAAC+AGG 0.458807 1_1:+59718477 Msa0032530:CDS
GTTGCAGTTTGAGGCAGCCT+GGG 0.460182 1_1:+59718360 Msa0032530:intron
AACACTCTATTTACCAATGT+TGG 0.460273 1_1:-59722004 None:intergenic
TAAATAGAGTGTTGCTGGAT+TGG 0.460720 1_1:+59722014 Msa0032530:three_prime_UTR
ATTAAAGTCCTCCTGTATGA+TGG 0.461686 1_1:+59721932 Msa0032530:three_prime_UTR
CATTTGCCAACTATGGTTGC+TGG 0.462444 1_1:+59717459 Msa0032530:CDS
GCTTTGACAAACATAGCTTC+TGG 0.467363 1_1:+59718382 Msa0032530:CDS
CCTGTATGATGGGACAAGCT+GGG 0.468046 1_1:+59721943 Msa0032530:three_prime_UTR
CAACACAGAGATTTATGAAA+AGG 0.468157 1_1:+59721605 Msa0032530:CDS
ATATCAAGAAAGAGGCTGCT+TGG 0.477404 1_1:+59721219 Msa0032530:CDS
CCCAGCTTGTCCCATCATAC+AGG 0.477877 1_1:-59721943 None:intergenic
GATTGATGATGCTGAGGGGT+TGG 0.479588 1_1:+59721554 Msa0032530:CDS
TTCTTATCTGTCCCGATCCT+AGG 0.480160 1_1:+59721430 Msa0032530:CDS
AGACAAACTGTCACAATCCT+AGG 0.480993 1_1:-59721447 None:intergenic
CCTGATTGAGAAGCATCGCC+TGG 0.486344 1_1:-59721681 None:intergenic
ATTCGCAAACAAACCAGAAA+AGG 0.486656 1_1:-59721805 None:intergenic
GTCTGTATAACCTCCTCAAT+CGG 0.488244 1_1:-59717661 None:intergenic
CGGAGAAGAGAAAGAGGCAG+TGG 0.488800 1_1:-59716990 None:intergenic
GTATCGGTTGCGACGGACCT+CGG 0.489943 1_1:-59717065 None:intergenic
ACCATATCAAACATTACAGC+TGG 0.491638 1_1:+59721013 Msa0032530:CDS
GCTATCTCAAATGCTACATC+TGG 0.492465 1_1:+59721242 Msa0032530:CDS
ATCGTCCAAACGCAAACTCC+AGG 0.492966 1_1:+59717041 Msa0032530:CDS
TTACCAATGTTGGACCCTGT+TGG 0.495530 1_1:-59721994 None:intergenic
ACCTGATCAAAAGGAGGCTG+TGG 0.496155 1_1:-59718862 None:intergenic
ATTTCTCAGCATAGAAAGCT+TGG 0.497993 1_1:-59718803 None:intergenic
CTATGCTGAGAAATGCTACC+TGG 0.506227 1_1:+59718812 Msa0032530:CDS
ACGATACGACATCGTTTAGC+AGG 0.506783 1_1:-59717023 None:intergenic
CACACACCAGCAACCATAGT+TGG 0.509375 1_1:-59717465 None:intergenic
GTTCCTTCTGTGCCTTCGGG+TGG 0.510496 1_1:+59721726 Msa0032530:CDS
ATTAACCATTCATTTATGGT+TGG 0.514725 1_1:-59716819 None:intergenic
GAGTGTTGCTGGATTGGCTT+GGG 0.515886 1_1:+59722020 Msa0032530:three_prime_UTR
ACAATAGAAGCTCAACAAGT+CGG 0.519609 1_1:-59719552 None:intergenic
CTTGAAAACATCTTGAAGGT+TGG 0.523089 1_1:+59721477 Msa0032530:CDS
AACTGTCACAATCCTAGGAT+CGG 0.523984 1_1:-59721442 None:intergenic
GGAATTAGCACTGAAGGAGA+TGG 0.524492 1_1:-59719691 None:intergenic
TCTCAACCATGGTGTCTTCA+CGG 0.525122 1_1:-59717123 None:intergenic
AAGATATGATAGTGCCCAGC+AGG 0.525630 1_1:-59719476 None:intergenic
GTTAACCAACCATAAATGAA+TGG 0.526156 1_1:+59716814 Msa0032530:five_prime_UTR
GCGGCCTTCTTCGGCATCGA+CGG 0.526344 1_1:-59717095 None:intergenic
GTCGCCGTCGATGCCGAAGA+AGG 0.528551 1_1:+59717091 Msa0032530:CDS
AGAACGTACTCCACCGATTG+AGG 0.529104 1_1:+59717648 Msa0032530:intron
CATCGACGGCGACCTTGTAT+CGG 0.531230 1_1:-59717081 None:intergenic
TCATTCAATTGTGCCAAAAG+AGG 0.531241 1_1:-59718775 None:intergenic
ATCTCAAATGCTACATCTGG+TGG 0.531801 1_1:+59721245 Msa0032530:CDS
ATTCAAGCTGTAATTGAAGC+TGG 0.533221 1_1:+59719520 Msa0032530:CDS
AGCTATGTTTGTCAAAGCCC+AGG 0.533920 1_1:-59718377 None:intergenic
TTAAAGTCCTCCTGTATGAT+GGG 0.534537 1_1:+59721933 Msa0032530:three_prime_UTR
GATCGACGGAGAAGAGAAAG+AGG 0.538590 1_1:-59716996 None:intergenic
AGGCCTTGAAAACATCTTGA+AGG 0.539236 1_1:+59721473 Msa0032530:CDS
TGGGCATTAGGAAATGTTGC+TGG 0.539661 1_1:+59718703 Msa0032530:CDS
GGTCCGTCGCAACCGATACA+AGG 0.540085 1_1:+59717069 Msa0032530:CDS
AGTCTTGACTGATGCCTGCT+GGG 0.542032 1_1:+59719462 Msa0032530:CDS
ACTGTCACAATCCTAGGATC+GGG 0.542887 1_1:-59721441 None:intergenic
GACACTTTCAAACTTCTGCA+GGG 0.542937 1_1:+59718834 Msa0032530:CDS
TGAGTTTGATATCAAGAAAG+AGG 0.543652 1_1:+59721211 Msa0032530:CDS
GATTCTTGAGACATACTGGT+TGG 0.544779 1_1:+59721635 Msa0032530:CDS
TGAATAAGACCAGCAAGAGC+AGG 0.545161 1_1:-59719424 None:intergenic
TCTCTGTGTTGTCATGACTC+TGG 0.550839 1_1:-59721593 None:intergenic
TCTTGAGACATACTGGTTGG+AGG 0.551326 1_1:+59721638 Msa0032530:CDS
ACTGTTGGAAACATTGTCAC+TGG 0.554408 1_1:+59719724 Msa0032530:CDS
CATCTTGAAGGTTGGAGAAG+CGG 0.554732 1_1:+59721485 Msa0032530:CDS
AAGTCAAATATACCTGTTCA+CGG 0.556545 1_1:-59718489 None:intergenic
ATCTCATGGTGACAGATGTA+TGG 0.557066 1_1:+59722061 Msa0032530:three_prime_UTR
TTTCCAACAGTACGAAGAGC+AGG 0.559463 1_1:-59719712 None:intergenic
CTCAGCATCATCAATCATCT+GGG 0.560931 1_1:-59721547 None:intergenic
AAATGAATGAAACTAACGGT+AGG 0.562334 1_1:-59716930 None:intergenic
ATTGTGACAGTTTGTCTGGA+AGG 0.563823 1_1:+59721453 Msa0032530:CDS
GACAGGTACCTAGTAAGTCA+AGG 0.569304 1_1:+59721384 Msa0032530:intron
TGTCCAACAGGGTCCAACAT+TGG 0.572509 1_1:+59721991 Msa0032530:three_prime_UTR
TCGTTTCTTTGTGTCCAACA+GGG 0.573793 1_1:+59721980 Msa0032530:three_prime_UTR
CTAAGGTGGTAATTGACCAT+GGG 0.574999 1_1:+59718419 Msa0032530:CDS
GCAGAAGTTTGAAAGTGTCC+AGG 0.579750 1_1:-59718830 None:intergenic
TGGAACATCTGAAAACACTA+AGG 0.579810 1_1:+59718402 Msa0032530:CDS
AGAGCAGGAATTAGCACTGA+AGG 0.580502 1_1:-59719697 None:intergenic
AGAACAAGATCACGACATCT+GGG 0.580552 1_1:-59718733 None:intergenic
TGGAGATGATTTGCAAACTC+AGG 0.581537 1_1:+59719744 Msa0032530:CDS
AAAGAACAAACCTGCAACTG+CGG 0.583325 1_1:-59717730 None:intergenic
CCATGGTGTCTTCACGGCGA+CGG 0.585962 1_1:-59717117 None:intergenic
GAATTAGCACTGAAGGAGAT+GGG 0.587950 1_1:-59719690 None:intergenic
CTGTATGATGGGACAAGCTG+GGG 0.589464 1_1:+59721944 Msa0032530:three_prime_UTR
ATCGACGAAAATAGGGACAC+TGG 0.590862 1_1:-59722357 None:intergenic
AGAGTGTTGCTGGATTGGCT+TGG 0.590986 1_1:+59722019 Msa0032530:three_prime_UTR
ATTGAGGAGGTTATACAGAC+TGG 0.591254 1_1:+59717664 Msa0032530:CDS
AATCCACCCGAAGGCACAGA+AGG 0.592098 1_1:-59721729 None:intergenic
GAGAAGTCTAGTATTGTCTA+CGG 0.592208 1_1:-59722103 None:intergenic
GCACTATCATATCTTTCTGA+TGG 0.593235 1_1:+59719484 Msa0032530:CDS
TAATGAATAACTGAACTCTA+GGG 0.595201 1_1:-59722320 None:intergenic
AATGAATGAAACTAACGGTA+GGG 0.599046 1_1:-59716929 None:intergenic
TCTCAATCAGGATTCAACTT+CGG 0.600258 1_1:+59721693 Msa0032530:CDS
GAAGACGAGACTATGCCTCC+AGG 0.602017 1_1:+59721663 Msa0032530:CDS
GCAAAATGCCTGATGCTCGT+TGG 0.604526 1_1:+59722248 Msa0032530:three_prime_UTR
ATTATATAAAGTTTCACGCA+GGG 0.606159 1_1:+59722418 Msa0032530:three_prime_UTR
ACGTTAGAGTGAAGAGCGGA+AGG 0.610168 1_1:-59717214 None:intergenic
CAACTATGGTTGCTGGTGTG+TGG 0.615148 1_1:+59717466 Msa0032530:CDS
CTGTGTTGTCATGACTCTGG+AGG 0.617202 1_1:-59721590 None:intergenic
ACTAAGGTGGTAATTGACCA+TGG 0.617924 1_1:+59718418 Msa0032530:CDS
TGATCTTGTTCTCGGTCACG+GGG 0.618284 1_1:+59718744 Msa0032530:CDS
TTATAAGAAAAGCATCAAGA+AGG 0.621627 1_1:+59720979 Msa0032530:CDS
CGACCTTGTATCGGTTGCGA+CGG 0.627945 1_1:-59717072 None:intergenic
TATTTAACAGGCTGTGATCG+AGG 0.629779 1_1:+59721148 Msa0032530:intron
CCATATCAAACATTACAGCT+GGG 0.630827 1_1:+59721014 Msa0032530:CDS
ACACTTTCAAACTTCTGCAG+GGG 0.631402 1_1:+59718835 Msa0032530:CDS
TGGTGTCTTCACGGCGACGG+CGG 0.632012 1_1:-59717114 None:intergenic
TGTATAACCTCCTCAATCGG+TGG 0.634105 1_1:-59717658 None:intergenic
ATAGGTTATCATCAATCATG+AGG 0.634624 1_1:+59720922 Msa0032530:intron
TATTATATAAAGTTTCACGC+AGG 0.637214 1_1:+59722417 Msa0032530:three_prime_UTR
TGATAAATGAATGAAACTAA+CGG 0.637262 1_1:-59716934 None:intergenic
CATCGTCACTAGAAGAAGCA+AGG 0.638488 1_1:-59718465 None:intergenic
ACAGGTACCTAGTAAGTCAA+GGG 0.638546 1_1:+59721385 Msa0032530:intron
CCAGATGATTGATGATGCTG+AGG 0.638583 1_1:+59721548 Msa0032530:CDS
AACATCTGAAAACACTAAGG+TGG 0.654726 1_1:+59718405 Msa0032530:CDS
AGCTTGTCCCATCATACAGG+AGG 0.659269 1_1:-59721940 None:intergenic
CAGATGATTGATGATGCTGA+GGG 0.661033 1_1:+59721549 Msa0032530:CDS
ATTCAACTTCGGTAGCGCTG+AGG 0.666056 1_1:+59721704 Msa0032530:CDS
GTCAACAGATTATATAGACA+AGG 0.667483 1_1:-59720950 None:intergenic
CCGTCGCCGTGAAGACACCA+TGG 0.674855 1_1:+59717117 Msa0032530:CDS
GTTTAGCAGGAAGTGATCGA+CGG 0.676584 1_1:-59717010 None:intergenic
AATAGAAGCTCAACAAGTCG+GGG 0.676710 1_1:-59719550 None:intergenic
ACGTACTCCACCGATTGAGG+AGG 0.680395 1_1:+59717651 Msa0032530:CDS
ACAGATAAGAAGATCACACA+AGG 0.680401 1_1:-59721418 None:intergenic
AGAGCGGAAGGAATCTGCTG+AGG 0.690264 1_1:-59717202 None:intergenic
GATTGAGAAGCATCGCCTGG+AGG 0.697893 1_1:-59721678 None:intergenic
TCATGGTGACAGATGTATGG+TGG 0.702524 1_1:+59722064 Msa0032530:three_prime_UTR
ATTCTTACGGATCTCAACCA+TGG 0.707053 1_1:-59717134 None:intergenic
TAAGGTGGTAATTGACCATG+GGG 0.708388 1_1:+59718420 Msa0032530:CDS
AAACGCAAACTCCAGGACCG+AGG 0.710372 1_1:+59717048 Msa0032530:CDS
TTGAAGTTAAATCCACCCGA+AGG 0.711716 1_1:-59721738 None:intergenic
AATGCATATGATAGAGAACA+CGG 0.712688 1_1:-59722454 None:intergenic
AAAAGGCTAAATATAAGACA+CGG 0.732928 1_1:-59721788 None:intergenic
TAGATGTTCATGCTTCAATG+GGG 0.738164 1_1:+59721765 Msa0032530:exon
AACGACGTTAGAGTGAAGAG+CGG 0.743526 1_1:-59717218 None:intergenic
AGATGATTGATGATGCTGAG+GGG 0.754975 1_1:+59721550 Msa0032530:CDS
CAGATAAGAAGATCACACAA+GGG 0.772619 1_1:-59721417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTAAAAAAAAAAA+AGG - chr1_1:59719630-59719649 None:intergenic 0.0%
!!! TTGTTTAATTTGAATTAATT+TGG + chr1_1:59717337-59717356 Msa0032530:intron 10.0%
!! ATTAATGAAGTAATTAATTT+AGG + chr1_1:59717594-59717613 Msa0032530:intron 10.0%
!!! AAGTTTAAAATTCAAAAAAT+AGG - chr1_1:59718058-59718077 None:intergenic 10.0%
!!! ATTTTTTATTTATTATCTGT+TGG + chr1_1:59719267-59719286 Msa0032530:intron 10.0%
!! AACTTTATATAATACAAAAT+AGG - chr1_1:59722411-59722430 None:intergenic 10.0%
!! ATTTAAGAATCAAAAAAACA+AGG + chr1_1:59716779-59716798 Msa0032530:five_prime_UTR 15.0%
!!! TTTTTAGATTTGTTTGAATT+AGG + chr1_1:59717377-59717396 Msa0032530:intron 15.0%
!! TAAAATTCAAAAAATAGGTT+TGG - chr1_1:59718053-59718072 None:intergenic 15.0%
!! TAAATAAAAAATTGTACTAG+TGG - chr1_1:59719259-59719278 None:intergenic 15.0%
!!! TACATTCTACTATTTTTTAT+AGG + chr1_1:59719387-59719406 Msa0032530:intron 15.0%
!! AAACAAAAAGAAAATATAAG+AGG - chr1_1:59720332-59720351 None:intergenic 15.0%
!! AAATGATTATTGTAACATAA+CGG - chr1_1:59720561-59720580 None:intergenic 15.0%
!!! ATTTCTTTCTGAATATTTTT+TGG + chr1_1:59720766-59720785 Msa0032530:intron 15.0%
!! ATCAATTAACCATTCATTTA+TGG - chr1_1:59716826-59716845 None:intergenic 20.0%
!! TGATAAATGAATGAAACTAA+CGG - chr1_1:59716937-59716956 None:intergenic 20.0%
!!! TACAGGAATTTTACAAAATT+CGG - chr1_1:59718267-59718286 None:intergenic 20.0%
!!! TTTTCAAGAAAAGATATCAT+GGG - chr1_1:59718644-59718663 None:intergenic 20.0%
!!! TATTTTTATACCTGATCAAA+AGG - chr1_1:59718874-59718893 None:intergenic 20.0%
!! ATGTAATACTCTAATCTATA+GGG - chr1_1:59719123-59719142 None:intergenic 20.0%
!! TATGTAATACTCTAATCTAT+AGG - chr1_1:59719124-59719143 None:intergenic 20.0%
!! TTTATCCACAAAAAAAAGAA+AGG - chr1_1:59719887-59719906 None:intergenic 20.0%
!!! TCTATTTTTCTTTTCACTAT+TGG + chr1_1:59720468-59720487 Msa0032530:intron 20.0%
!! AGATCTTATCATTTATACTA+CGG + chr1_1:59720818-59720837 Msa0032530:intron 20.0%
!! AATTTCTATTGTTTGTTTGT+TGG + chr1_1:59720877-59720896 Msa0032530:intron 20.0%
!!! GATGCTTTTCTTATAATTAT+TGG - chr1_1:59720975-59720994 None:intergenic 20.0%
!! CTGTTAAATATTAGGAAATT+AGG - chr1_1:59721138-59721157 None:intergenic 20.0%
!! CTAATTTCCTAATATTTAAC+AGG + chr1_1:59721136-59721155 Msa0032530:intron 20.0%
!! GATAAAAATATAGGCAATAA+TGG + chr1_1:59721507-59721526 Msa0032530:CDS 20.0%
! ATTAACCATTCATTTATGGT+TGG - chr1_1:59716822-59716841 None:intergenic 25.0%
! GAAAAAGAAATCACAAATCT+TGG + chr1_1:59716863-59716882 Msa0032530:five_prime_UTR 25.0%
! GAAGTGATTTAGGAATAATA+AGG - chr1_1:59717281-59717300 None:intergenic 25.0%
!! AGATTTGTTTGAATTAGGTT+AGG + chr1_1:59717382-59717401 Msa0032530:intron 25.0%
!! GATTTGTTTGAATTAGGTTA+GGG + chr1_1:59717383-59717402 Msa0032530:intron 25.0%
!! ACAGGAATTTTACAAAATTC+GGG - chr1_1:59718266-59718285 None:intergenic 25.0%
!!! CTTTAAAATGCAGAAACTTT+GGG + chr1_1:59718534-59718553 Msa0032530:intron 25.0%
!!! GTTTTCAAGAAAAGATATCA+TGG - chr1_1:59718645-59718664 None:intergenic 25.0%
! TGACAAGGTAAAATATTACT+TGG + chr1_1:59718981-59719000 Msa0032530:intron 25.0%
! GACAAGGTAAAATATTACTT+GGG + chr1_1:59718982-59719001 Msa0032530:intron 25.0%
! ATCTTATGGATAACATTGTT+TGG + chr1_1:59719167-59719186 Msa0032530:intron 25.0%
! TAAATCAAATATTGAGCAGA+TGG - chr1_1:59719322-59719341 None:intergenic 25.0%
! GATCCAAAAATACAACATAA+TGG - chr1_1:59719366-59719385 None:intergenic 25.0%
! ATAAAAGAAATACTGTTAGC+AGG + chr1_1:59719902-59719921 Msa0032530:intron 25.0%
! TAAAAGAAATACTGTTAGCA+GGG + chr1_1:59719903-59719922 Msa0032530:intron 25.0%
! GTTTGCTTATTAGATTACTA+AGG + chr1_1:59720585-59720604 Msa0032530:intron 25.0%
! TTAAAGAAAGGTTTGACATA+TGG - chr1_1:59720690-59720709 None:intergenic 25.0%
! TGTCAAACCTTTCTTTAAAT+TGG + chr1_1:59720692-59720711 Msa0032530:intron 25.0%
!!! TTATAAGAAAAGCATCAAGA+AGG + chr1_1:59720979-59720998 Msa0032530:CDS 25.0%
! ATAATATTATTAACCCTCCA+GGG - chr1_1:59721315-59721334 None:intergenic 25.0%
! AAAAGGCTAAATATAAGACA+CGG - chr1_1:59721791-59721810 None:intergenic 25.0%
!! AACTTTATCAAGAATTTTGC+AGG + chr1_1:59721891-59721910 Msa0032530:intron 25.0%
!!! TCAGTATCATGATTTTTTCT+TGG + chr1_1:59722157-59722176 Msa0032530:three_prime_UTR 25.0%
! CTTGGTTATATGTAATAGTT+TGG + chr1_1:59722175-59722194 Msa0032530:three_prime_UTR 25.0%
! AATCGTAACTAAAACTTAAG+TGG - chr1_1:59722215-59722234 None:intergenic 25.0%
!!! TTAAGTTTTAGTTACGATTG+TGG + chr1_1:59722216-59722235 Msa0032530:three_prime_UTR 25.0%
!!! TAAGTTTTAGTTACGATTGT+GGG + chr1_1:59722217-59722236 Msa0032530:three_prime_UTR 25.0%
! AAAAATTCATAGGTACCAAT+GGG - chr1_1:59722282-59722301 None:intergenic 25.0%
! AAAAAATTCATAGGTACCAA+TGG - chr1_1:59722283-59722302 None:intergenic 25.0%
!!! TTGGTACCTATGAATTTTTT+TGG + chr1_1:59722283-59722302 Msa0032530:three_prime_UTR 25.0%
! TAATGAATAACTGAACTCTA+GGG - chr1_1:59722323-59722342 None:intergenic 25.0%
! ATAATGAATAACTGAACTCT+AGG - chr1_1:59722324-59722343 None:intergenic 25.0%
! TATTATATAAAGTTTCACGC+AGG + chr1_1:59722417-59722436 Msa0032530:three_prime_UTR 25.0%
! ATTATATAAAGTTTCACGCA+GGG + chr1_1:59722418-59722437 Msa0032530:three_prime_UTR 25.0%
GTTAACCAACCATAAATGAA+TGG + chr1_1:59716814-59716833 Msa0032530:five_prime_UTR 30.0%
AATGAATGAAACTAACGGTA+GGG - chr1_1:59716932-59716951 None:intergenic 30.0%
AAATGAATGAAACTAACGGT+AGG - chr1_1:59716933-59716952 None:intergenic 30.0%
! GATTGACTTTGATATTTGTG+TGG + chr1_1:59717624-59717643 Msa0032530:intron 30.0%
! TTTTACAAAATTCGGGGTAT+GGG - chr1_1:59718259-59718278 None:intergenic 30.0%
! ATTTTACAAAATTCGGGGTA+TGG - chr1_1:59718260-59718279 None:intergenic 30.0%
! CAGGAATTTTACAAAATTCG+GGG - chr1_1:59718265-59718284 None:intergenic 30.0%
AAGTCAAATATACCTGTTCA+CGG - chr1_1:59718492-59718511 None:intergenic 30.0%
! CCAAAGTTTCTGCATTTTAA+AGG - chr1_1:59718536-59718555 None:intergenic 30.0%
!! CCTTTAAAATGCAGAAACTT+TGG + chr1_1:59718533-59718552 Msa0032530:intron 30.0%
ATTTCATACACACACAAAAG+AGG - chr1_1:59718611-59718630 None:intergenic 30.0%
!!! TTCTGTGATTTTTGTTTTGC+AGG + chr1_1:59718675-59718694 Msa0032530:intron 30.0%
! TTTTATACCTGATCAAAAGG+AGG - chr1_1:59718871-59718890 None:intergenic 30.0%
!!! TTAACTGTTACTTTTCTGTC+TGG + chr1_1:59718945-59718964 Msa0032530:intron 30.0%
! GTAATATTTTACCTTGTCAG+AGG - chr1_1:59718980-59718999 None:intergenic 30.0%
CTTATCGAGTCAAAAGAATA+TGG + chr1_1:59719090-59719109 Msa0032530:intron 30.0%
ACAGAATACTTCTGATCTTA+TGG + chr1_1:59719153-59719172 Msa0032530:intron 30.0%
CATACTTTGCAATTTCATGA+CGG - chr1_1:59719224-59719243 None:intergenic 30.0%
GAAATTGCAAAGTATGCAAT+TGG + chr1_1:59719228-59719247 Msa0032530:intron 30.0%
! CTGCCATTATGTTGTATTTT+TGG + chr1_1:59719360-59719379 Msa0032530:intron 30.0%
TTCGTAACAAATAAAACCAC+AGG - chr1_1:59719849-59719868 None:intergenic 30.0%
CACAAAAAAAAGAAAGGCAA+AGG - chr1_1:59719881-59719900 None:intergenic 30.0%
!!! CTTTGCCTTTCTTTTTTTTG+TGG + chr1_1:59719879-59719898 Msa0032530:intron 30.0%
AAAAGAAATACTGTTAGCAG+GGG + chr1_1:59719904-59719923 Msa0032530:intron 30.0%
TTAGAGTGATATGAAGGTAA+TGG + chr1_1:59719970-59719989 Msa0032530:intron 30.0%
TAGAGTGATATGAAGGTAAT+GGG + chr1_1:59719971-59719990 Msa0032530:intron 30.0%
AAAATAAGGCTTAGAGTGAT+AGG + chr1_1:59720192-59720211 Msa0032530:intron 30.0%
AAATAAGGCTTAGAGTGATA+GGG + chr1_1:59720193-59720212 Msa0032530:intron 30.0%
!!! ATGCCATCAGTTTTTTTCAA+CGG - chr1_1:59720293-59720312 None:intergenic 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG - chr1_1:59720391-59720410 None:intergenic 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG - chr1_1:59720392-59720411 None:intergenic 30.0%
ACCATTTGCCTCTAATAAAA+GGG - chr1_1:59720406-59720425 None:intergenic 30.0%
GATTATTGTAACATAACGGT+TGG - chr1_1:59720557-59720576 None:intergenic 30.0%
TCAAGCAATGACATTGAAAT+AGG - chr1_1:59720630-59720649 None:intergenic 30.0%
CAATAATGCAAAGAAAGGTT+TGG - chr1_1:59720661-59720680 None:intergenic 30.0%
TCAAGCAATAATGCAAAGAA+AGG - chr1_1:59720666-59720685 None:intergenic 30.0%
CCTCAATCCAATTTAAAGAA+AGG - chr1_1:59720702-59720721 None:intergenic 30.0%
CCTTTCTTTAAATTGGATTG+AGG + chr1_1:59720699-59720718 Msa0032530:intron 30.0%
!!! TATTCAAATACCGATTTTCC+TGG + chr1_1:59720723-59720742 Msa0032530:intron 30.0%
TATTCAGAAAGAAATAGAGC+TGG - chr1_1:59720761-59720780 None:intergenic 30.0%
! ATGATTGATGATAACCTATG+GGG - chr1_1:59720921-59720940 None:intergenic 30.0%
! CATGATTGATGATAACCTAT+GGG - chr1_1:59720922-59720941 None:intergenic 30.0%
! TCATGATTGATGATAACCTA+TGG - chr1_1:59720923-59720942 None:intergenic 30.0%
ATAGGTTATCATCAATCATG+AGG + chr1_1:59720922-59720941 Msa0032530:intron 30.0%
GTCAACAGATTATATAGACA+AGG - chr1_1:59720953-59720972 None:intergenic 30.0%
ATCACAGCCTGTTAAATATT+AGG - chr1_1:59721146-59721165 None:intergenic 30.0%
TGAGTTTGATATCAAGAAAG+AGG + chr1_1:59721211-59721230 Msa0032530:CDS 30.0%
! ATGCATTTTCAATATTTCCC+TGG + chr1_1:59721295-59721314 Msa0032530:intron 30.0%
! ATTTTCAATATTTCCCTGGA+GGG + chr1_1:59721299-59721318 Msa0032530:intron 30.0%
CATAATATTATTAACCCTCC+AGG - chr1_1:59721316-59721335 None:intergenic 30.0%
CTGGAGGGTTAATAATATTA+TGG + chr1_1:59721314-59721333 Msa0032530:intron 30.0%
AATTATTCTCCATGTTTGAC+AGG + chr1_1:59721367-59721386 Msa0032530:intron 30.0%
CAACACAGAGATTTATGAAA+AGG + chr1_1:59721605-59721624 Msa0032530:CDS 30.0%
!! GTCTTATATTTAGCCTTTTC+TGG + chr1_1:59721792-59721811 Msa0032530:three_prime_UTR 30.0%
AACACTCTATTTACCAATGT+TGG - chr1_1:59722007-59722026 None:intergenic 30.0%
CATCGACCAAAAAAATTCAT+AGG - chr1_1:59722292-59722311 None:intergenic 30.0%
AACTTTCATCGACGAAAATA+GGG - chr1_1:59722367-59722386 None:intergenic 30.0%
AAACTTTCATCGACGAAAAT+AGG - chr1_1:59722368-59722387 None:intergenic 30.0%
AAAAAAACAAGGCAACGATG+AGG + chr1_1:59716790-59716809 Msa0032530:five_prime_UTR 35.0%
! AGCTTTGATCGAAGTGATTT+AGG - chr1_1:59717291-59717310 None:intergenic 35.0%
! TTCTATGTTGTTGTTGCAGT+TGG + chr1_1:59717434-59717453 Msa0032530:intron 35.0%
TTTCGAAAGCTGCTATCAAT+TGG + chr1_1:59717528-59717547 Msa0032530:CDS 35.0%
AAAGCTGCTATCAATTGGTT+AGG + chr1_1:59717533-59717552 Msa0032530:intron 35.0%
! TTTTGTCGAGTTTCTGATGA+GGG + chr1_1:59717699-59717718 Msa0032530:CDS 35.0%
TACGTAACGCTATCTAGTAT+GGG - chr1_1:59717854-59717873 None:intergenic 35.0%
TTTACACGTATGATGCTTGT+CGG + chr1_1:59717884-59717903 Msa0032530:intron 35.0%
GAAACCATAAATTTCACTCG+CGG - chr1_1:59717935-59717954 None:intergenic 35.0%
ACAACCATAAATTTCACTCG+CGG - chr1_1:59717969-59717988 None:intergenic 35.0%
TGTATCAGCAACATCAAACA+TGG - chr1_1:59718316-59718335 None:intergenic 35.0%
TGGAACATCTGAAAACACTA+AGG + chr1_1:59718402-59718421 Msa0032530:CDS 35.0%
AACATCTGAAAACACTAAGG+TGG + chr1_1:59718405-59718424 Msa0032530:CDS 35.0%
CAAGGAGCTTCACAAAAATT+GGG - chr1_1:59718450-59718469 None:intergenic 35.0%
!! TGCATTTTAAAGGCAGATGA+AGG - chr1_1:59718526-59718545 None:intergenic 35.0%
TCATTCAATTGTGCCAAAAG+AGG - chr1_1:59718778-59718797 None:intergenic 35.0%
ATTTCTCAGCATAGAAAGCT+TGG - chr1_1:59718806-59718825 None:intergenic 35.0%
AATCGAATAACTTAGTCCTG+TGG + chr1_1:59718914-59718933 Msa0032530:intron 35.0%
ACAGTTAAGAAAAATGCCAC+AGG - chr1_1:59718933-59718952 None:intergenic 35.0%
TAACAGCTAGATGAAATCGA+AGG + chr1_1:59719034-59719053 Msa0032530:intron 35.0%
AACAGCTAGATGAAATCGAA+GGG + chr1_1:59719035-59719054 Msa0032530:intron 35.0%
GCACTATCATATCTTTCTGA+TGG + chr1_1:59719484-59719503 Msa0032530:CDS 35.0%
ATTCAAGCTGTAATTGAAGC+TGG + chr1_1:59719520-59719539 Msa0032530:CDS 35.0%
ACAATAGAAGCTCAACAAGT+CGG - chr1_1:59719555-59719574 None:intergenic 35.0%
AGTACCTCACATCTCAAATT+TGG + chr1_1:59719576-59719595 Msa0032530:intron 35.0%
TGAATGTTCTACTCTTGTTC+AGG + chr1_1:59719665-59719684 Msa0032530:intron 35.0%
!! TAAGGTGTATGAGTTGGTTT+AGG + chr1_1:59719930-59719949 Msa0032530:intron 35.0%
!! AAGGTGTATGAGTTGGTTTA+GGG + chr1_1:59719931-59719950 Msa0032530:intron 35.0%
TAAGGCTTAGAGTGATATGA+AGG + chr1_1:59719964-59719983 Msa0032530:intron 35.0%
! GTTGAGTGTGATTTGTAAGT+GGG - chr1_1:59720004-59720023 None:intergenic 35.0%
GCACACTAACTACTAACATA+AGG + chr1_1:59720037-59720056 Msa0032530:intron 35.0%
! TTTTCAACGGCAAATGTTAG+TGG - chr1_1:59720280-59720299 None:intergenic 35.0%
TTGCCGTTGAAAAAAACTGA+TGG + chr1_1:59720287-59720306 Msa0032530:intron 35.0%
! TCTAAGCACCCTTTTATTAG+AGG + chr1_1:59720395-59720414 Msa0032530:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+TGG + chr1_1:59720402-59720421 Msa0032530:intron 35.0%
CACCATTTGCCTCTAATAAA+AGG - chr1_1:59720407-59720426 None:intergenic 35.0%
GCAAATGGTGCTTACATATA+GGG + chr1_1:59720417-59720436 Msa0032530:intron 35.0%
AGATGCATAACATGAACAGA+AGG - chr1_1:59720522-59720541 None:intergenic 35.0%
ATCTCACAATCCAGGAAAAT+CGG - chr1_1:59720736-59720755 None:intergenic 35.0%
!! ATCTCAGTAGAAACTTGTTG+AGG - chr1_1:59720802-59720821 None:intergenic 35.0%
!! TTTGTTTGTTGGTTTGAACC+TGG + chr1_1:59720888-59720907 Msa0032530:intron 35.0%
ACCATATCAAACATTACAGC+TGG + chr1_1:59721013-59721032 Msa0032530:CDS 35.0%
CCATATCAAACATTACAGCT+GGG + chr1_1:59721014-59721033 Msa0032530:CDS 35.0%
! CATTTTCAATATTTCCCTGG+AGG + chr1_1:59721298-59721317 Msa0032530:intron 35.0%
TAATACACCCTTGACTTACT+AGG - chr1_1:59721395-59721414 None:intergenic 35.0%
CAGATAAGAAGATCACACAA+GGG - chr1_1:59721420-59721439 None:intergenic 35.0%
ACAGATAAGAAGATCACACA+AGG - chr1_1:59721421-59721440 None:intergenic 35.0%
! CAACCTTCAAGATGTTTTCA+AGG - chr1_1:59721479-59721498 None:intergenic 35.0%
CTTGAAAACATCTTGAAGGT+TGG + chr1_1:59721477-59721496 Msa0032530:CDS 35.0%
GGAGAAGCGGATAAAAATAT+AGG + chr1_1:59721498-59721517 Msa0032530:CDS 35.0%
TGAAGATTCTTGAGACATAC+TGG + chr1_1:59721631-59721650 Msa0032530:CDS 35.0%
TCTCAATCAGGATTCAACTT+CGG + chr1_1:59721693-59721712 Msa0032530:CDS 35.0%
TAGATGTTCATGCTTCAATG+GGG + chr1_1:59721765-59721784 Msa0032530:exon 35.0%
ATTCGCAAACAAACCAGAAA+AGG - chr1_1:59721808-59721827 None:intergenic 35.0%
! TTTGTTTGCGAATTTCTGGA+TGG + chr1_1:59721815-59721834 Msa0032530:intron 35.0%
!! AATTTTGCAGGAGTTTTGTC+TGG + chr1_1:59721903-59721922 Msa0032530:intron 35.0%
ATTAAAGTCCTCCTGTATGA+TGG + chr1_1:59721932-59721951 Msa0032530:three_prime_UTR 35.0%
TTAAAGTCCTCCTGTATGAT+GGG + chr1_1:59721933-59721952 Msa0032530:three_prime_UTR 35.0%
!! ATTGGTAAATAGAGTGTTGC+TGG + chr1_1:59722009-59722028 Msa0032530:three_prime_UTR 35.0%
!! TAAATAGAGTGTTGCTGGAT+TGG + chr1_1:59722014-59722033 Msa0032530:three_prime_UTR 35.0%
!! GCTTGGTTTTTCATATCTCA+TGG + chr1_1:59722047-59722066 Msa0032530:three_prime_UTR 35.0%
!!! TGTATGGTGGCTTGATTTTT+TGG + chr1_1:59722077-59722096 Msa0032530:three_prime_UTR 35.0%
GAGAAGTCTAGTATTGTCTA+CGG - chr1_1:59722106-59722125 None:intergenic 35.0%
AAATAGGGACACTGGATATA+TGG - chr1_1:59722352-59722371 None:intergenic 35.0%
TGGAGACTATACTGCTCTAT+TGG - chr1_1:59716973-59716992 None:intergenic 40.0%
ATTCTTACGGATCTCAACCA+TGG - chr1_1:59717137-59717156 None:intergenic 40.0%
TCTCTTCACGACGATTCTTA+CGG - chr1_1:59717150-59717169 None:intergenic 40.0%
GTTGGAACATTTGCCAACTA+TGG + chr1_1:59717452-59717471 Msa0032530:intron 40.0%
GTCTGTATAACCTCCTCAAT+CGG - chr1_1:59717664-59717683 None:intergenic 40.0%
ATTGAGGAGGTTATACAGAC+TGG + chr1_1:59717664-59717683 Msa0032530:CDS 40.0%
! GTTTTGTCGAGTTTCTGATG+AGG + chr1_1:59717698-59717717 Msa0032530:CDS 40.0%
AAAGAACAAACCTGCAACTG+CGG - chr1_1:59717733-59717752 None:intergenic 40.0%
GTACGTAACGCTATCTAGTA+TGG - chr1_1:59717855-59717874 None:intergenic 40.0%
!! TCATACGTGTAAAGGTACCA+TGG - chr1_1:59717877-59717896 None:intergenic 40.0%
GACAAGCATCATACGTGTAA+AGG - chr1_1:59717885-59717904 None:intergenic 40.0%
GATGCATACTTGCATAGGTA+TGG - chr1_1:59718294-59718313 None:intergenic 40.0%
ACATGGATGCATACTTGCAT+AGG - chr1_1:59718299-59718318 None:intergenic 40.0%
GCTTTGACAAACATAGCTTC+TGG + chr1_1:59718382-59718401 Msa0032530:CDS 40.0%
ACTAAGGTGGTAATTGACCA+TGG + chr1_1:59718418-59718437 Msa0032530:CDS 40.0%
CTAAGGTGGTAATTGACCAT+GGG + chr1_1:59718419-59718438 Msa0032530:CDS 40.0%
TAAGGTGGTAATTGACCATG+GGG + chr1_1:59718420-59718439 Msa0032530:CDS 40.0%
GCAAGGAGCTTCACAAAAAT+TGG - chr1_1:59718451-59718470 None:intergenic 40.0%
!!! TTTTTGTTTTGCAGGCTGTG+TGG + chr1_1:59718683-59718702 Msa0032530:intron 40.0%
!!! TTTTGTTTTGCAGGCTGTGT+GGG + chr1_1:59718684-59718703 Msa0032530:intron 40.0%
AGAACAAGATCACGACATCT+GGG - chr1_1:59718736-59718755 None:intergenic 40.0%
AGATGTCGTGATCTTGTTCT+CGG + chr1_1:59718736-59718755 Msa0032530:CDS 40.0%
GACACTTTCAAACTTCTGCA+GGG + chr1_1:59718834-59718853 Msa0032530:CDS 40.0%
ACACTTTCAAACTTCTGCAG+GGG + chr1_1:59718835-59718854 Msa0032530:CDS 40.0%
TTTCATCTAGCTGTTACAGC+AGG - chr1_1:59719030-59719049 None:intergenic 40.0%
ACAGCTAGATGAAATCGAAG+GGG + chr1_1:59719036-59719055 Msa0032530:intron 40.0%
AATAGAAGCTCAACAAGTCG+GGG - chr1_1:59719553-59719572 None:intergenic 40.0%
CAATAGAAGCTCAACAAGTC+GGG - chr1_1:59719554-59719573 None:intergenic 40.0%
! ACAGCCAAATTTGAGATGTG+AGG - chr1_1:59719583-59719602 None:intergenic 40.0%
! GAATTAGCACTGAAGGAGAT+GGG - chr1_1:59719693-59719712 None:intergenic 40.0%
ACTGTTGGAAACATTGTCAC+TGG + chr1_1:59719724-59719743 Msa0032530:CDS 40.0%
! TGGAGATGATTTGCAAACTC+AGG + chr1_1:59719744-59719763 Msa0032530:CDS 40.0%
ACAACAACATGAGATACTCC+TGG - chr1_1:59719779-59719798 None:intergenic 40.0%
GGAAAATCACTGAGATCGAA+AGG - chr1_1:59719828-59719847 None:intergenic 40.0%
TACTGTTAGCAGGGGTTATA+AGG + chr1_1:59719912-59719931 Msa0032530:intron 40.0%
GGGTTATAAGGTGTATGAGT+TGG + chr1_1:59719924-59719943 Msa0032530:intron 40.0%
!! AGGTGTATGAGTTGGTTTAG+GGG + chr1_1:59719932-59719951 Msa0032530:intron 40.0%
! GGTTGAGTGTGATTTGTAAG+TGG - chr1_1:59720005-59720024 None:intergenic 40.0%
AGTTAGTGTGCTCTGTTAGT+GGG - chr1_1:59720028-59720047 None:intergenic 40.0%
TAGTTAGTGTGCTCTGTTAG+TGG - chr1_1:59720029-59720048 None:intergenic 40.0%
GAATCGAACTTGAAACCTTG+AGG - chr1_1:59720125-59720144 None:intergenic 40.0%
GGCAAATGGTGCTTACATAT+AGG + chr1_1:59720416-59720435 Msa0032530:intron 40.0%
ATGGTGCTTACATATAGGGA+CGG + chr1_1:59720421-59720440 Msa0032530:intron 40.0%
CCCAGCTGTAATGTTTGATA+TGG - chr1_1:59721017-59721036 None:intergenic 40.0%
TGGGAATAAACAGCAGATTC+AGG + chr1_1:59721033-59721052 Msa0032530:CDS 40.0%
TATTTAACAGGCTGTGATCG+AGG + chr1_1:59721148-59721167 Msa0032530:intron 40.0%
GTGATCGAGGCCAATATATT+TGG + chr1_1:59721161-59721180 Msa0032530:CDS 40.0%
CACCAGAGGACCAAATATAT+TGG - chr1_1:59721174-59721193 None:intergenic 40.0%
ATATCAAGAAAGAGGCTGCT+TGG + chr1_1:59721219-59721238 Msa0032530:CDS 40.0%
TATCAAGAAAGAGGCTGCTT+GGG + chr1_1:59721220-59721239 Msa0032530:CDS 40.0%
GCTATCTCAAATGCTACATC+TGG + chr1_1:59721242-59721261 Msa0032530:CDS 40.0%
ATCTCAAATGCTACATCTGG+TGG + chr1_1:59721245-59721264 Msa0032530:CDS 40.0%
TACTAGGTACCTGTCAAACA+TGG - chr1_1:59721379-59721398 None:intergenic 40.0%
ACAGGTACCTAGTAAGTCAA+GGG + chr1_1:59721385-59721404 Msa0032530:intron 40.0%
AACTGTCACAATCCTAGGAT+CGG - chr1_1:59721445-59721464 None:intergenic 40.0%
AGACAAACTGTCACAATCCT+AGG - chr1_1:59721450-59721469 None:intergenic 40.0%
TAGGATTGTGACAGTTTGTC+TGG + chr1_1:59721449-59721468 Msa0032530:CDS 40.0%
ATTGTGACAGTTTGTCTGGA+AGG + chr1_1:59721453-59721472 Msa0032530:CDS 40.0%
AGGCCTTGAAAACATCTTGA+AGG + chr1_1:59721473-59721492 Msa0032530:CDS 40.0%
CTCAGCATCATCAATCATCT+GGG - chr1_1:59721550-59721569 None:intergenic 40.0%
!! CAGATGATTGATGATGCTGA+GGG + chr1_1:59721549-59721568 Msa0032530:CDS 40.0%
!! AGATGATTGATGATGCTGAG+GGG + chr1_1:59721550-59721569 Msa0032530:CDS 40.0%
GATTCTTGAGACATACTGGT+TGG + chr1_1:59721635-59721654 Msa0032530:CDS 40.0%
TTGAAGTTAAATCCACCCGA+AGG - chr1_1:59721741-59721760 None:intergenic 40.0%
!! CTGGTTTGTTTGCGAATTTC+TGG + chr1_1:59721811-59721830 Msa0032530:intron 40.0%
TCGTTTCTTTGTGTCCAACA+GGG + chr1_1:59721980-59721999 Msa0032530:three_prime_UTR 40.0%
ATCTCATGGTGACAGATGTA+TGG + chr1_1:59722061-59722080 Msa0032530:three_prime_UTR 40.0%
GTTACGATTGTGGGTCTATT+TGG + chr1_1:59722226-59722245 Msa0032530:three_prime_UTR 40.0%
TAAAAACTCCAACGAGCATC+AGG - chr1_1:59722259-59722278 None:intergenic 40.0%
! TCGTTGGAGTTTTTACCCAT+TGG + chr1_1:59722264-59722283 Msa0032530:three_prime_UTR 40.0%
GTTTAGCAGGAAGTGATCGA+CGG - chr1_1:59717013-59717032 None:intergenic 45.0%
ACGATACGACATCGTTTAGC+AGG - chr1_1:59717026-59717045 None:intergenic 45.0%
TCTCAACCATGGTGTCTTCA+CGG - chr1_1:59717126-59717145 None:intergenic 45.0%
TTGCTCAAAAAGAGACGCGA+AGG + chr1_1:59717172-59717191 Msa0032530:CDS 45.0%
AACGACGTTAGAGTGAAGAG+CGG - chr1_1:59717221-59717240 None:intergenic 45.0%
CTCTAACGTCGTTGAGAAGA+AGG + chr1_1:59717228-59717247 Msa0032530:CDS 45.0%
CATTTGCCAACTATGGTTGC+TGG + chr1_1:59717459-59717478 Msa0032530:CDS 45.0%
TGTATAACCTCCTCAATCGG+TGG - chr1_1:59717661-59717680 None:intergenic 45.0%
CTAGATAGCGTTACGTACCA+TGG + chr1_1:59717857-59717876 Msa0032530:intron 45.0%
TCTGCCGCGAGTGAAATTTA+TGG + chr1_1:59717928-59717947 Msa0032530:intron 45.0%
TCTGCCGCGAGTGAAATTTA+TGG + chr1_1:59717928-59717947 Msa0032530:intron 45.0%
CATACTTGCATAGGTATGGC+GGG - chr1_1:59718290-59718309 None:intergenic 45.0%
GCATACTTGCATAGGTATGG+CGG - chr1_1:59718291-59718310 None:intergenic 45.0%
GTACTGTGTGTTGCAGTTTG+AGG + chr1_1:59718351-59718370 Msa0032530:intron 45.0%
AGCTATGTTTGTCAAAGCCC+AGG - chr1_1:59718380-59718399 None:intergenic 45.0%
CATCGTCACTAGAAGAAGCA+AGG - chr1_1:59718468-59718487 None:intergenic 45.0%
TGGGCATTAGGAAATGTTGC+TGG + chr1_1:59718703-59718722 Msa0032530:CDS 45.0%
GAGAACAAGATCACGACATC+TGG - chr1_1:59718737-59718756 None:intergenic 45.0%
CTATGCTGAGAAATGCTACC+TGG + chr1_1:59718812-59718831 Msa0032530:CDS 45.0%
!! GCAGAAGTTTGAAAGTGTCC+AGG - chr1_1:59718833-59718852 None:intergenic 45.0%
GGACACTTTCAAACTTCTGC+AGG + chr1_1:59718833-59718852 Msa0032530:CDS 45.0%
CAGCTAGATGAAATCGAAGG+GGG + chr1_1:59719037-59719056 Msa0032530:intron 45.0%
GTTGCGTATGTGAACCTGAA+GGG + chr1_1:59719289-59719308 Msa0032530:intron 45.0%
TGAATAAGACCAGCAAGAGC+AGG - chr1_1:59719427-59719446 None:intergenic 45.0%
! AAGATATGATAGTGCCCAGC+AGG - chr1_1:59719479-59719498 None:intergenic 45.0%
! GGAATTAGCACTGAAGGAGA+TGG - chr1_1:59719694-59719713 None:intergenic 45.0%
! AGAGCAGGAATTAGCACTGA+AGG - chr1_1:59719700-59719719 None:intergenic 45.0%
ATTCCTGCTCTTCGTACTGT+TGG + chr1_1:59719709-59719728 Msa0032530:CDS 45.0%
TTTCCAACAGTACGAAGAGC+AGG - chr1_1:59719715-59719734 None:intergenic 45.0%
!! AAACTCAGGTATTGACCACC+AGG + chr1_1:59719758-59719777 Msa0032530:intron 45.0%
ACAACATGAGATACTCCTGG+TGG - chr1_1:59719776-59719795 None:intergenic 45.0%
! CGATCTCAGTGATTTTCCTG+TGG + chr1_1:59719830-59719849 Msa0032530:intron 45.0%
!! GGTGTATGAGTTGGTTTAGG+GGG + chr1_1:59719933-59719952 Msa0032530:intron 45.0%
!! GTGTATGAGTTGGTTTAGGG+GGG + chr1_1:59719934-59719953 Msa0032530:intron 45.0%
GTTTAGGGGGGAGAAACATA+AGG + chr1_1:59719946-59719965 Msa0032530:intron 45.0%
TTAGTGTGCTCTGTTAGTGG+GGG - chr1_1:59720026-59720045 None:intergenic 45.0%
GTTAGTGTGCTCTGTTAGTG+GGG - chr1_1:59720027-59720046 None:intergenic 45.0%
AAGGCTTAGAGTAACCCTCT+TGG + chr1_1:59720056-59720075 Msa0032530:intron 45.0%
AGGCTTAGAGTAACCCTCTT+GGG + chr1_1:59720057-59720076 Msa0032530:intron 45.0%
TTAGAGTAACCCTCTTGGGT+TGG + chr1_1:59720061-59720080 Msa0032530:intron 45.0%
!! ATGGTATTGGCTTGGGATCT+GGG + chr1_1:59720088-59720107 Msa0032530:intron 45.0%
TCGAACTTGAAACCTTGAGG+AGG - chr1_1:59720122-59720141 None:intergenic 45.0%
CTAACTTAGCCCACCCAAAT+TGG - chr1_1:59720156-59720175 None:intergenic 45.0%
TAAGGCTTAGAGTGATAGGG+AGG + chr1_1:59720196-59720215 Msa0032530:intron 45.0%
TTAGAGTGATAGGGAGGTCA+TGG + chr1_1:59720202-59720221 Msa0032530:intron 45.0%
GTTAGTGTGCTCTGTTAGTG+GGG - chr1_1:59720027-59720046 None:intergenic 45.0%
GGTTAGTGTGCTCTGTTAGT+GGG - chr1_1:59720259-59720278 None:intergenic 45.0%
TGGTTAGTGTGCTCTGTTAG+TGG - chr1_1:59720260-59720279 None:intergenic 45.0%
TGCTTAGATATAGGGACGGA+GGG - chr1_1:59720383-59720402 None:intergenic 45.0%
! AGGGTGCTTAGATATAGGGA+CGG - chr1_1:59720387-59720406 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr1_1:59720425-59720444 Msa0032530:intron 45.0%
TGATGATAACCTATGGGGCA+AGG - chr1_1:59720916-59720935 None:intergenic 45.0%
GGCCAATATATTTGGTCCTC+TGG + chr1_1:59721169-59721188 Msa0032530:CDS 45.0%
!!! TTTTGAAGCAGACTCACCAG+AGG - chr1_1:59721188-59721207 None:intergenic 45.0%
GACAGGTACCTAGTAAGTCA+AGG + chr1_1:59721384-59721403 Msa0032530:intron 45.0%
TTCTTATCTGTCCCGATCCT+AGG + chr1_1:59721430-59721449 Msa0032530:CDS 45.0%
ACTGTCACAATCCTAGGATC+GGG - chr1_1:59721444-59721463 None:intergenic 45.0%
CATCTTGAAGGTTGGAGAAG+CGG + chr1_1:59721485-59721504 Msa0032530:CDS 45.0%
CCTCAGCATCATCAATCATC+TGG - chr1_1:59721551-59721570 None:intergenic 45.0%
!! CCAGATGATTGATGATGCTG+AGG + chr1_1:59721548-59721567 Msa0032530:CDS 45.0%
TCTCTGTGTTGTCATGACTC+TGG - chr1_1:59721596-59721615 None:intergenic 45.0%
! TCTTGAGACATACTGGTTGG+AGG + chr1_1:59721638-59721657 Msa0032530:CDS 45.0%
GTCGTTTCTTTGTGTCCAAC+AGG + chr1_1:59721979-59721998 Msa0032530:three_prime_UTR 45.0%
TTACCAATGTTGGACCCTGT+TGG - chr1_1:59721997-59722016 None:intergenic 45.0%
TCATGGTGACAGATGTATGG+TGG + chr1_1:59722064-59722083 Msa0032530:three_prime_UTR 45.0%
ATCGACGAAAATAGGGACAC+TGG - chr1_1:59722360-59722379 None:intergenic 45.0%
!!! TTATTATTTTTTCTAAATAT+TGG + chr1_1:59718578-59718597 Msa0032530:intron 5.0%
!!! TATTATTTTTTCTAAATATT+GGG + chr1_1:59718579-59718598 Msa0032530:intron 5.0%
!! TCTTAAAATAAAATAAAATA+AGG + chr1_1:59720178-59720197 Msa0032530:intron 5.0%
GATCGACGGAGAAGAGAAAG+AGG - chr1_1:59716999-59717018 None:intergenic 50.0%
ATCGTCCAAACGCAAACTCC+AGG + chr1_1:59717041-59717060 Msa0032530:CDS 50.0%
ACGTTAGAGTGAAGAGCGGA+AGG - chr1_1:59717217-59717236 None:intergenic 50.0%
CACACACCAGCAACCATAGT+TGG - chr1_1:59717468-59717487 None:intergenic 50.0%
CAACTATGGTTGCTGGTGTG+TGG + chr1_1:59717466-59717485 Msa0032530:CDS 50.0%
! AGAACGTACTCCACCGATTG+AGG + chr1_1:59717648-59717667 Msa0032530:intron 50.0%
CAAAAATTGGGACAGCCCCA+TGG - chr1_1:59718438-59718457 None:intergenic 50.0%
TAGTGACGATGTCCGTGAAC+AGG + chr1_1:59718477-59718496 Msa0032530:CDS 50.0%
CGTGATCTTGTTCTCGGTCA+CGG + chr1_1:59718742-59718761 Msa0032530:CDS 50.0%
GTGATCTTGTTCTCGGTCAC+GGG + chr1_1:59718743-59718762 Msa0032530:CDS 50.0%
TGATCTTGTTCTCGGTCACG+GGG + chr1_1:59718744-59718763 Msa0032530:CDS 50.0%
ACCTGATCAAAAGGAGGCTG+TGG - chr1_1:59718865-59718884 None:intergenic 50.0%
GGTAATGCACTCCTCTGACA+AGG + chr1_1:59718966-59718985 Msa0032530:intron 50.0%
GGTTGCGTATGTGAACCTGA+AGG + chr1_1:59719288-59719307 Msa0032530:intron 50.0%
CAGATGGATAACCACCCTTC+AGG - chr1_1:59719306-59719325 None:intergenic 50.0%
AAGTCTTGACTGATGCCTGC+TGG + chr1_1:59719461-59719480 Msa0032530:CDS 50.0%
AGTCTTGACTGATGCCTGCT+GGG + chr1_1:59719462-59719481 Msa0032530:CDS 50.0%
!! TTGGGTTGGCCTGATGGTAT+TGG + chr1_1:59720075-59720094 Msa0032530:intron 50.0%
!! TTGGCCTGATGGTATTGGCT+TGG + chr1_1:59720080-59720099 Msa0032530:intron 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG + chr1_1:59720081-59720100 Msa0032530:intron 50.0%
GATCCCAAGCCAATACCATC+AGG - chr1_1:59720087-59720106 None:intergenic 50.0%
!! GATGGTATTGGCTTGGGATC+TGG + chr1_1:59720087-59720106 Msa0032530:intron 50.0%
!! TGGTATTGGCTTGGGATCTG+GGG + chr1_1:59720089-59720108 Msa0032530:intron 50.0%
GATTCCCCCAGTGCCAATTT+GGG + chr1_1:59720140-59720159 Msa0032530:intron 50.0%
! GACGGAGGGAGTATATCTGA+AGG - chr1_1:59720369-59720388 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG - chr1_1:59720384-59720403 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr1_1:59720424-59720443 Msa0032530:intron 50.0%
AGCTGGTCATCTCACAATCC+AGG - chr1_1:59720744-59720763 None:intergenic 50.0%
GCATCAAGAAGGAAGCTTGC+TGG + chr1_1:59720990-59721009 Msa0032530:CDS 50.0%
!! GATTGATGATGCTGAGGGGT+TGG + chr1_1:59721554-59721573 Msa0032530:CDS 50.0%
CTGTGTTGTCATGACTCTGG+AGG - chr1_1:59721593-59721612 None:intergenic 50.0%
ATTCAACTTCGGTAGCGCTG+AGG + chr1_1:59721704-59721723 Msa0032530:CDS 50.0%
TGAGGTTCCTTCTGTGCCTT+CGG + chr1_1:59721722-59721741 Msa0032530:CDS 50.0%
AGCTTGTCCCATCATACAGG+AGG - chr1_1:59721943-59721962 None:intergenic 50.0%
! TCCTGTATGATGGGACAAGC+TGG + chr1_1:59721942-59721961 Msa0032530:three_prime_UTR 50.0%
! CCTGTATGATGGGACAAGCT+GGG + chr1_1:59721943-59721962 Msa0032530:three_prime_UTR 50.0%
! CTGTATGATGGGACAAGCTG+GGG + chr1_1:59721944-59721963 Msa0032530:three_prime_UTR 50.0%
TGTCCAACAGGGTCCAACAT+TGG + chr1_1:59721991-59722010 Msa0032530:three_prime_UTR 50.0%
!! AGAGTGTTGCTGGATTGGCT+TGG + chr1_1:59722019-59722038 Msa0032530:three_prime_UTR 50.0%
!! GAGTGTTGCTGGATTGGCTT+GGG + chr1_1:59722020-59722039 Msa0032530:three_prime_UTR 50.0%
GCAAAATGCCTGATGCTCGT+TGG + chr1_1:59722248-59722267 Msa0032530:three_prime_UTR 50.0%
CGGAGAAGAGAAAGAGGCAG+TGG - chr1_1:59716993-59717012 None:intergenic 55.0%
TCGGTCCTGGAGTTTGCGTT+TGG - chr1_1:59717049-59717068 None:intergenic 55.0%
AAACGCAAACTCCAGGACCG+AGG + chr1_1:59717048-59717067 Msa0032530:CDS 55.0%
!! CGACCTTGTATCGGTTGCGA+CGG - chr1_1:59717075-59717094 None:intergenic 55.0%
CATCGACGGCGACCTTGTAT+CGG - chr1_1:59717084-59717103 None:intergenic 55.0%
AGAGCGGAAGGAATCTGCTG+AGG - chr1_1:59717205-59717224 None:intergenic 55.0%
! ACGTACTCCACCGATTGAGG+AGG + chr1_1:59717651-59717670 Msa0032530:CDS 55.0%
GGAAGACTTTCCGCAGTTGC+AGG + chr1_1:59717720-59717739 Msa0032530:CDS 55.0%
!! TGCATAGGTATGGCGGGTAC+AGG - chr1_1:59718284-59718303 None:intergenic 55.0%
! TGTTGCAGTTTGAGGCAGCC+TGG + chr1_1:59718359-59718378 Msa0032530:intron 55.0%
! GTTGCAGTTTGAGGCAGCCT+GGG + chr1_1:59718360-59718379 Msa0032530:intron 55.0%
TTGCAGGCTGTGTGGGCATT+AGG + chr1_1:59718691-59718710 Msa0032530:intron 55.0%
!! CGGGGCTTTGGTTCCTCTTT+TGG + chr1_1:59718762-59718781 Msa0032530:CDS 55.0%
! GCCACAGCCTCCTTTTGATC+AGG + chr1_1:59718861-59718880 Msa0032530:CDS 55.0%
GCGTATGTGAACCTGAAGGG+TGG + chr1_1:59719292-59719311 Msa0032530:intron 55.0%
ACCATCAGGCCAACCCAAGA+GGG - chr1_1:59720073-59720092 None:intergenic 55.0%
TACCATCAGGCCAACCCAAG+AGG - chr1_1:59720074-59720093 None:intergenic 55.0%
!! GGTATTGGCTTGGGATCTGG+GGG + chr1_1:59720090-59720109 Msa0032530:intron 55.0%
CGATTCCCCCAGTGCCAATT+TGG + chr1_1:59720139-59720158 Msa0032530:intron 55.0%
AGCCCACCCAAATTGGCACT+GGG - chr1_1:59720149-59720168 None:intergenic 55.0%
TAGCCCACCCAAATTGGCAC+TGG - chr1_1:59720150-59720169 None:intergenic 55.0%
GAAGACGAGACTATGCCTCC+AGG + chr1_1:59721663-59721682 Msa0032530:CDS 55.0%
!! GATTGAGAAGCATCGCCTGG+AGG - chr1_1:59721681-59721700 None:intergenic 55.0%
!! CCTGATTGAGAAGCATCGCC+TGG - chr1_1:59721684-59721703 None:intergenic 55.0%
CCAGGCGATGCTTCTCAATC+AGG + chr1_1:59721681-59721700 Msa0032530:CDS 55.0%
GAGGTTCCTTCTGTGCCTTC+GGG + chr1_1:59721723-59721742 Msa0032530:CDS 55.0%
! AATCCACCCGAAGGCACAGA+AGG - chr1_1:59721732-59721751 None:intergenic 55.0%
CCCAGCTTGTCCCATCATAC+AGG - chr1_1:59721946-59721965 None:intergenic 55.0%
!! GGATTGGCTTGGGCAATGCT+TGG + chr1_1:59722030-59722049 Msa0032530:three_prime_UTR 55.0%
!! GTATCGGTTGCGACGGACCT+CGG - chr1_1:59717068-59717087 None:intergenic 60.0%
GGTCCGTCGCAACCGATACA+AGG + chr1_1:59717069-59717088 Msa0032530:CDS 60.0%
CCATGGTGTCTTCACGGCGA+CGG - chr1_1:59717120-59717139 None:intergenic 60.0%
TGTTCTCGGTCACGGGGCTT+TGG + chr1_1:59718750-59718769 Msa0032530:CDS 60.0%
! CCAGCAAGAGCAGGAAGTGC+AGG - chr1_1:59719418-59719437 None:intergenic 60.0%
CCTGCACTTCCTGCTCTTGC+TGG + chr1_1:59719415-59719434 Msa0032530:CDS 60.0%
!! ACCCTCTTGGGTTGGCCTGA+TGG + chr1_1:59720069-59720088 Msa0032530:intron 60.0%
! TGGGGGTATGCTCCTCCTCA+AGG + chr1_1:59720107-59720126 Msa0032530:intron 60.0%
TCCCCCAGTGCCAATTTGGG+TGG + chr1_1:59720143-59720162 Msa0032530:intron 60.0%
! CCCACCCAAATTGGCACTGG+GGG - chr1_1:59720147-59720166 None:intergenic 60.0%
CCCCCAGTGCCAATTTGGGT+GGG + chr1_1:59720144-59720163 Msa0032530:intron 60.0%
GCCCACCCAAATTGGCACTG+GGG - chr1_1:59720148-59720167 None:intergenic 60.0%
AACCTGGTGCCTTGCCCCAT+AGG + chr1_1:59720904-59720923 Msa0032530:intron 60.0%
! AACCTATGGGGCAAGGCACC+AGG - chr1_1:59720909-59720928 None:intergenic 60.0%
GTTCCTTCTGTGCCTTCGGG+TGG + chr1_1:59721726-59721745 Msa0032530:CDS 60.0%
GTCGCCGTCGATGCCGAAGA+AGG + chr1_1:59717091-59717110 Msa0032530:CDS 65.0%
! GCGGCCTTCTTCGGCATCGA+CGG - chr1_1:59717098-59717117 None:intergenic 65.0%
TGGTGTCTTCACGGCGACGG+CGG - chr1_1:59717117-59717136 None:intergenic 65.0%
CCGTCGCCGTGAAGACACCA+TGG + chr1_1:59717117-59717136 Msa0032530:CDS 65.0%
GTTGCGACGGACCTCGGTCC+TGG - chr1_1:59717062-59717081 None:intergenic 70.0%
ACGGCGACGGCGGCCTTCTT+CGG - chr1_1:59717107-59717126 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59716765 59722470 59716765 ID=Msa0032530;Name=Msa0032530
chr1_1 mRNA 59716765 59722470 59716765 ID=Msa0032530-mRNA-1;Parent=Msa0032530;Name=Msa0032530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=269|1|1|1|0.9|0.81|11|604|533
chr1_1 exon 59716765 59717249 59716765 ID=Msa0032530-mRNA-1:exon:18494;Parent=Msa0032530-mRNA-1
chr1_1 exon 59717453 59717549 59717453 ID=Msa0032530-mRNA-1:exon:18495;Parent=Msa0032530-mRNA-1
chr1_1 exon 59717650 59717741 59717650 ID=Msa0032530-mRNA-1:exon:18496;Parent=Msa0032530-mRNA-1
chr1_1 exon 59718367 59718498 59718367 ID=Msa0032530-mRNA-1:exon:18497;Parent=Msa0032530-mRNA-1
chr1_1 exon 59718697 59718882 59718697 ID=Msa0032530-mRNA-1:exon:18498;Parent=Msa0032530-mRNA-1
chr1_1 exon 59719409 59719572 59719409 ID=Msa0032530-mRNA-1:exon:18499;Parent=Msa0032530-mRNA-1
chr1_1 exon 59719687 59719765 59719687 ID=Msa0032530-mRNA-1:exon:18500;Parent=Msa0032530-mRNA-1
chr1_1 exon 59720926 59721054 59720926 ID=Msa0032530-mRNA-1:exon:18501;Parent=Msa0032530-mRNA-1
chr1_1 exon 59721158 59721285 59721158 ID=Msa0032530-mRNA-1:exon:18502;Parent=Msa0032530-mRNA-1
chr1_1 exon 59721389 59721813 59721389 ID=Msa0032530-mRNA-1:exon:18503;Parent=Msa0032530-mRNA-1
chr1_1 exon 59721913 59722470 59721913 ID=Msa0032530-mRNA-1:exon:18504;Parent=Msa0032530-mRNA-1
chr1_1 five_prime_UTR 59716765 59717033 59716765 ID=Msa0032530-mRNA-1:five_prime_utr;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59717034 59717249 59717034 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59717453 59717549 59717453 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59717650 59717741 59717650 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59718367 59718498 59718367 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59718697 59718882 59718697 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59719409 59719572 59719409 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59719687 59719765 59719687 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59720926 59721054 59720926 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59721158 59721285 59721158 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 CDS 59721389 59721767 59721389 ID=Msa0032530-mRNA-1:cds;Parent=Msa0032530-mRNA-1
chr1_1 three_prime_UTR 59721768 59721813 59721768 ID=Msa0032530-mRNA-1:three_prime_utr;Parent=Msa0032530-mRNA-1
chr1_1 three_prime_UTR 59721913 59722470 59721913 ID=Msa0032530-mRNA-1:three_prime_utr;Parent=Msa0032530-mRNA-1
Gene Sequence

>Msa0032530

ATGTCGTATCGTCCAAACGCAAACTCCAGGACCGAGGTCCGTCGCAACCGATACAAGGTCGCCGTCGATGCCGAAGAAGGCCGCCGTCGCCGTGAAGACACCATGGTTGAGATCCGTAAGAATCGTCGTGAAGAGAGTTTGCTCAAAAAGAGACGCGAAGGTCTTCAACCTCAGCAGATTCCTTCCGCTCTTCACTCTAACGTCGTTGAGAAGAAGTTGGAACATTTGCCAACTATGGTTGCTGGTGTGTGGAGTGATGATAATAACTTGCAGCTTGAATCAACGACTCAGTTTCGAAAGCTGCTATCAATTGAACGTACTCCACCGATTGAGGAGGTTATACAGACTGGTGTTGTTTCTCGTTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCCTGGGCTTTGACAAACATAGCTTCTGGAACATCTGAAAACACTAAGGTGGTAATTGACCATGGGGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCTAGTGACGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCTCCCAGATGTCGTGATCTTGTTCTCGGTCACGGGGCTTTGGTTCCTCTTTTGGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCTGGTCTTATTCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGCTGGGCACTATCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTATTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACTGGAGATGATTTGCAAACTCAGGTTATCATCAATCATGAGGCTCTTCCTTGTCTATATAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGCTGGACCATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATCGAGGCCAATATATTTGGTCCTCTGGTGAGTCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCGGATAAAAATATAGGCAATAATGGTGACGTGAATCTATATGCCCAGATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGACGAGACTATGCCTCCAGGCGATGCTTCTCAATCAGGATTCAACTTCGGTAGCGCTGAGGTTCCTTCTGTGCCTTCGGGTGGATTTAACTTCAATCAGTAG
Protein sequence

>Msa0032530

MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHEALPCLYNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGGFNFNQ*