AlfalfaGEDB | Msa0033290

M. sativa cultivar zhongmu-4 / Msa0033290

KEGG: K08959|K08960
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033290	XP_003589957.2	99.782	458	1	0	1	458	1	458	0.0	938

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033290	sp\|Q9LW62\|CKL10_ARATH	77.511	458	86	4	2	458	1	442	0.0	723

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033290	Msa0688930	0.880689	4.462620e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0033290	MtrunA17_Chr1g0166821	99.782	458	1	0	1	458	1	458	938
Msa0033290	MtrunA17_Chr1g0187571	86.022	465	57	3	1	458	1	464	770
Msa0033290	MtrunA17_Chr7g0261501	77.440	461	94	6	2	452	1	461	701
Msa0033290	MtrunA17_Chr1g0183631	72.391	460	110	7	2	452	1	452	668
Msa0033290	MtrunA17_Chr1g0167261	74.731	372	66	4	1	368	1	348	553
Msa0033290	MtrunA17_Chr2g0329981	64.186	430	129	5	2	424	1	412	551
Msa0033290	MtrunA17_Chr4g0071031	62.980	443	144	6	2	425	1	442	548
Msa0033290	MtrunA17_Chr8g0342821	60.851	470	162	8	2	452	1	467	544
Msa0033290	MtrunA17_Chr8g0390211	61.305	429	147	7	2	420	1	420	524
Msa0033290	MtrunA17_Chr6g0486611	62.704	429	134	10	2	416	1	417	522

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0033290	AT3G23340.1	77.511	458	86	4	2	458	1	442	723
Msa0033290	AT4G14340.1	75.647	464	92	5	2	458	7	456	717
Msa0033290	AT3G23340.2	74.891	458	84	5	2	458	1	428	687
Msa0033290	AT5G43320.1	72.708	480	108	8	2	458	1	480	683
Msa0033290	AT1G04440.1	71.795	468	121	3	2	458	1	468	676
Msa0033290	AT4G28540.1	71.639	476	107	9	2	452	5	477	664
Msa0033290	AT1G03930.1	73.517	472	101	9	2	452	1	469	651
Msa0033290	AT5G44100.1	71.158	475	112	6	2	452	1	474	630
Msa0033290	AT5G44100.2	71.158	475	112	6	2	452	1	474	630
Msa0033290	AT4G14340.2	86.503	326	43	1	2	326	7	332	602

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Find 172 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAAGTGGGTCATT+TGG	0.364493	1_1:-60761252	Msa0033290:CDS
AAACCCATCAGAAAGTTGTC+GGG	0.559935	1_1:+60759038	None:intergenic
AAAGCCCGACAACTTTCTGA+TGG	0.540005	1_1:-60759042	Msa0033290:CDS
AAATATGATGTGAATTCTGT+TGG	0.516022	1_1:+60757451	None:intergenic
AAATGAACAGGTGTGACGGG+TGG	0.680166	1_1:+60756226	None:intergenic
AAATTGTATATGCTTCTTCA+AGG	0.478491	1_1:-60759679	Msa0033290:CDS
AAGCATTGAAGTACCTCTAT+TGG	0.339689	1_1:+60757758	None:intergenic
AAGCCCGACAACTTTCTGAT+GGG	0.563914	1_1:-60759041	Msa0033290:CDS
AATCGAAGTAAGAACAAATC+TGG	0.316441	1_1:+60761439	None:intergenic
AATCGCTCTCCAGATGGTCC+TGG	0.408461	1_1:+60757066	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTAGGAAAGAAGGAAAA+TGG	+	chr1_1:60755711-60755730	None:intergenic	30.0%
ATCGAAGTAAGAACAAATCT+GGG	+	chr1_1:60755905-60755924	None:intergenic	30.0%
AATCGAAGTAAGAACAAATC+TGG	+	chr1_1:60755906-60755925	None:intergenic	30.0%
ATTGGTGGAAAATTCAAACT+TGG	-	chr1_1:60756063-60756082	Msa0033290:three_prime_UTR	30.0%
TTCAAACTTGGAAGGAAAAT+TGG	-	chr1_1:60756075-60756094	Msa0033290:three_prime_UTR	30.0%
GATGCATTGTATTGAAGTAA+TGG	-	chr1_1:60756354-60756373	Msa0033290:CDS	30.0%
AAATAGTGATCGGAGTAATA+AGG	+	chr1_1:60756501-60756520	None:intergenic	30.0%
TATTACTCCGATCACTATTT+AGG	-	chr1_1:60756501-60756520	Msa0033290:CDS	30.0%
ATTACTCCGATCACTATTTA+GGG	-	chr1_1:60756502-60756521	Msa0033290:CDS	30.0%
GTACATAAACTACATAATCC+GGG	+	chr1_1:60756881-60756900	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	60755673	60761691	60755673	ID=Msa0033290;Name=Msa0033290
chr1_1	mRNA	60755673	60761691	60755673	ID=Msa0033290-mRNA-1;Parent=Msa0033290;Name=Msa0033290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=375\|1\|1\|1\|1\|1\|14\|623\|458
chr1_1	exon	60755673	60756574	60755673	ID=Msa0033290-mRNA-1:exon:19044;Parent=Msa0033290-mRNA-1
chr1_1	exon	60756700	60756818	60756700	ID=Msa0033290-mRNA-1:exon:19043;Parent=Msa0033290-mRNA-1
chr1_1	exon	60757052	60757112	60757052	ID=Msa0033290-mRNA-1:exon:19042;Parent=Msa0033290-mRNA-1
chr1_1	exon	60757199	60757272	60757199	ID=Msa0033290-mRNA-1:exon:19041;Parent=Msa0033290-mRNA-1
chr1_1	exon	60757365	60757491	60757365	ID=Msa0033290-mRNA-1:exon:19040;Parent=Msa0033290-mRNA-1
chr1_1	exon	60757772	60757856	60757772	ID=Msa0033290-mRNA-1:exon:19039;Parent=Msa0033290-mRNA-1
chr1_1	exon	60757940	60758003	60757940	ID=Msa0033290-mRNA-1:exon:19038;Parent=Msa0033290-mRNA-1
chr1_1	exon	60758127	60758188	60758127	ID=Msa0033290-mRNA-1:exon:19037;Parent=Msa0033290-mRNA-1
chr1_1	exon	60758615	60758685	60758615	ID=Msa0033290-mRNA-1:exon:19036;Parent=Msa0033290-mRNA-1
chr1_1	exon	60759019	60759114	60759019	ID=Msa0033290-mRNA-1:exon:19035;Parent=Msa0033290-mRNA-1
chr1_1	exon	60759211	60759359	60759211	ID=Msa0033290-mRNA-1:exon:19034;Parent=Msa0033290-mRNA-1
chr1_1	exon	60759674	60759743	60759674	ID=Msa0033290-mRNA-1:exon:19033;Parent=Msa0033290-mRNA-1
chr1_1	exon	60761102	60761142	60761102	ID=Msa0033290-mRNA-1:exon:19032;Parent=Msa0033290-mRNA-1
chr1_1	exon	60761238	60761691	60761238	ID=Msa0033290-mRNA-1:exon:19031;Parent=Msa0033290-mRNA-1
chr1_1	five_prime_UTR	60761317	60761691	60761317	ID=Msa0033290-mRNA-1:five_prime_utr;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60761238	60761316	60761238	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60761102	60761142	60761102	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60759674	60759743	60759674	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60759211	60759359	60759211	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60759019	60759114	60759019	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60758615	60758685	60758615	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60758127	60758188	60758127	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60757940	60758003	60757940	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60757772	60757856	60757772	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60757365	60757491	60757365	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60757199	60757272	60757199	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60757052	60757112	60757052	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60756700	60756818	60756700	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	CDS	60756296	60756574	60756296	ID=Msa0033290-mRNA-1:cds;Parent=Msa0033290-mRNA-1
chr1_1	three_prime_UTR	60755673	60756295	60755673	ID=Msa0033290-mRNA-1:three_prime_utr;Parent=Msa0033290-mRNA-1

Gene Sequence

>Msa0033290

ATGATGGATCTTGTTATTGGTGGAAAATTCAAACTTGGAAGGAAAATTGGAAGTGGGTCATTTGGAGAAATTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTTGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTCTACGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACTGGAATACCTCATATAAAGTGGTCTGGAGTCGAGGGTGAGTACAATGTCATGGCCATTGACCTTCTTGGACCAAGTCTCGAAGACTTATTTAACTATTGTAGTAGAAAATTCTCTCTGAAGACAGTGTTGATGCTTGCTGATCAACTAATAAACAGAGTAGAGTATATGCACTCTCGGGGTTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACCGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCATGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAAATGCTTACTCCAATAGAGGTATTGTGCAAGTCTCATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGACTCTTCCGGGACCTATTCATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACAAGGCCAAGTGTGAAACCAGCCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCTGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGATGTGCAACCTGATTCTGATAGGGCTCGCAGTTCTACTCGCAATGGCAGTGCTTCGAAAAGGCCAATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCGAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCCAAATCATCCTTTACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGAAAATGA

Protein sequence

>Msa0033290

MMDLVIGGKFKLGRKIGSGSFGEIYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGEYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPALNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSAQGLQHRSLDNMPSSKDVQPDSDRARSSTRNGSASKRPMISSSRPSSSGEPSESRSSRLISSSSRLSTTQRVQPGLESKSSFTRTAGTRGGRDDTLKSFELLSIGTGKRK*