AlfalfaGEDB | Msa0688930

M. sativa cultivar zhongmu-4 / Msa0688930

KEGG: K08959|K08960
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688930	XP_003589957.2	92.045	352	20	4	1	345	108	458	0.0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688930	sp\|Q39050\|CKL11_ARATH	66.852	359	90	9	1	345	113	456	9.17e-159	455

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688930	G7I3R5	92.045	352	20	4	1	345	108	458	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033290	Msa0688930	0.880689	4.462620e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688930	MtrunA17_Chr1g0166821	92.045	352	20	4	1	345	108	458	0.0	587
Msa0688930	MtrunA17_Chr1g0187571	78.273	359	62	7	1	345	108	464	9.94e-177	498
Msa0688930	MtrunA17_Chr7g0261501	66.854	356	100	10	1	339	107	461	3.06e-149	428
Msa0688930	MtrunA17_Chr1g0183631	60.563	355	115	11	1	339	107	452	6.21e-137	397
Msa0688930	MtrunA17_Chr8g0390211	53.395	324	124	12	1	307	107	420	8.00e-101	303
Msa0688930	MtrunA17_Chr1g0167261	62.406	266	64	8	1	255	108	348	5.12e-100	299
Msa0688930	MtrunA17_Chr4g0071031	55.172	319	115	10	1	293	107	423	3.55e-99	300
Msa0688930	MtrunA17_Chr2g0329981	65.652	230	67	5	1	219	107	335	5.34e-99	300
Msa0688930	MtrunA17_Chr6g0486611	55.108	323	113	15	1	303	107	417	5.27e-98	296
Msa0688930	MtrunA17_Chr8g0342821	70.755	212	51	6	1	205	107	314	9.72e-98	297

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688930	AT4G14340.1	66.852	359	90	9	1	345	113	456	9.32e-160	455
Msa0688930	AT3G23340.2	67.139	353	91	8	1	345	93	428	4.92e-159	452
Msa0688930	AT3G23340.1	67.139	353	91	8	1	345	107	442	1.13e-158	452
Msa0688930	AT5G43320.1	63.200	375	107	11	1	345	107	480	3.65e-145	419
Msa0688930	AT4G28540.1	63.612	371	99	13	1	339	111	477	1.89e-143	414
Msa0688930	AT1G04440.1	61.983	363	119	7	1	345	107	468	3.95e-143	413
Msa0688930	AT1G03930.1	62.670	367	105	13	1	339	107	469	5.74e-130	380
Msa0688930	AT5G44100.1	60.270	370	114	10	1	339	107	474	2.80e-125	368
Msa0688930	AT5G44100.2	60.270	370	114	10	1	339	107	474	2.80e-125	368
Msa0688930	AT4G14340.2	77.376	221	41	5	1	213	113	332	2.38e-117	344

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Find 141 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATCAGAAAGTTGTC+GGG	0.559935	4_4:-55316209	None:intergenic
AAAGCCCGACAACTTTCTGA+TGG	0.540005	4_4:+55316205	Msa0688930:CDS
AAATATGATGTGAATTCTGT+TGG	0.516022	4_4:-55317795	None:intergenic
AAATGAACAGGTGTGACGGG+TGG	0.680166	4_4:-55319018	None:intergenic
AAATTGTATATGCTTCTTCA+AGG	0.478491	4_4:+55315570	Msa0688930:five_prime_UTR
AAGCATTGAAGTACCTCTAT+TGG	0.339689	4_4:-55317488	None:intergenic
AAGCCCGACAACTTTCTGAT+GGG	0.563914	4_4:+55316206	Msa0688930:CDS
AATCGCTCTCCAGATGGTCC+TGG	0.408461	4_4:-55318179	None:intergenic
ACCCGTACCGCAGGGACACG+AGG	0.630056	4_4:+55318884	Msa0688930:CDS
ACCGCAATGATCGGCAATAG+TGG	0.400015	4_4:-55317818	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAGGAAGTAAGTTTATAT+CGG	+	chr4_4:55315590-55315609	Msa0688930:intron	30.0%
TTAAATAAGTCTTCGAGACT+TGG	-	chr4_4:55315986-55316005	None:intergenic	30.0%
ATACTCTACTCTGTTTATCT+AGG	-	chr4_4:55316154-55316173	None:intergenic	30.0%
AATCAGATTCTTAGAACTTG+AGG	-	chr4_4:55316343-55316362	None:intergenic	30.0%
ACAAGAAATGGAAACCAAAT+AGG	+	chr4_4:55316458-55316477	Msa0688930:intron	30.0%
ATTTAGTGAACGGGATTATA+TGG	-	chr4_4:55316504-55316523	None:intergenic	30.0%
GCACAATAAATTTAGTGAAC+GGG	-	chr4_4:55316513-55316532	None:intergenic	30.0%
TTTCATATTAGCTACCTGTA+TGG	-	chr4_4:55316648-55316667	None:intergenic	30.0%
CAGGTAGCTAATATGAAATT+TGG	+	chr4_4:55316650-55316669	Msa0688930:intron	30.0%
CAATATACTCAAGGAATCAA+AGG	-	chr4_4:55316697-55316716	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	55315515	55319593	55315515	ID=Msa0688930;Name=Msa0688930
chr4_4	mRNA	55315515	55319593	55315515	ID=Msa0688930-mRNA-1;Parent=Msa0688930;Name=Msa0688930-mRNA-1;_AED=0.16;_eAED=0.16;_QI=213\|0.81\|0.83\|1\|1\|0.91\|12\|623\|345
chr4_4	exon	55315515	55315597	55315515	ID=Msa0688930-mRNA-1:exon:14593;Parent=Msa0688930-mRNA-1
chr4_4	exon	55315912	55316059	55315912	ID=Msa0688930-mRNA-1:exon:14594;Parent=Msa0688930-mRNA-1
chr4_4	exon	55316164	55316250	55316164	ID=Msa0688930-mRNA-1:exon:14595;Parent=Msa0688930-mRNA-1
chr4_4	exon	55316582	55316652	55316582	ID=Msa0688930-mRNA-1:exon:14596;Parent=Msa0688930-mRNA-1
chr4_4	exon	55317079	55317140	55317079	ID=Msa0688930-mRNA-1:exon:14597;Parent=Msa0688930-mRNA-1
chr4_4	exon	55317266	55317329	55317266	ID=Msa0688930-mRNA-1:exon:14598;Parent=Msa0688930-mRNA-1
chr4_4	exon	55317412	55317496	55317412	ID=Msa0688930-mRNA-1:exon:14599;Parent=Msa0688930-mRNA-1
chr4_4	exon	55317777	55317902	55317777	ID=Msa0688930-mRNA-1:exon:14600;Parent=Msa0688930-mRNA-1
chr4_4	exon	55318003	55318068	55318003	ID=Msa0688930-mRNA-1:exon:14601;Parent=Msa0688930-mRNA-1
chr4_4	exon	55318155	55318215	55318155	ID=Msa0688930-mRNA-1:exon:14602;Parent=Msa0688930-mRNA-1
chr4_4	exon	55318449	55318567	55318449	ID=Msa0688930-mRNA-1:exon:14603;Parent=Msa0688930-mRNA-1
chr4_4	exon	55318692	55319593	55318692	ID=Msa0688930-mRNA-1:exon:14604;Parent=Msa0688930-mRNA-1
chr4_4	five_prime_UTR	55315515	55315597	55315515	ID=Msa0688930-mRNA-1:five_prime_utr;Parent=Msa0688930-mRNA-1
chr4_4	five_prime_UTR	55315912	55316041	55315912	ID=Msa0688930-mRNA-1:five_prime_utr;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55316042	55316059	55316042	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55316164	55316250	55316164	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55316582	55316652	55316582	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55317079	55317140	55317079	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55317266	55317329	55317266	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55317412	55317496	55317412	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55317777	55317902	55317777	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55318003	55318068	55318003	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55318155	55318215	55318155	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55318449	55318567	55318449	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	CDS	55318692	55318970	55318692	ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4	three_prime_UTR	55318971	55319593	55318971	ID=Msa0688930-mRNA-1:three_prime_utr;Parent=Msa0688930-mRNA-1

Gene Sequence

>Msa0688930

ATGCTTGCTGATCAACTAAGTAGAGTATATGCACTCTCGGGGTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACCGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCATGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAAATGCTTACTCCAATAGAGGTATTGTGCAAGTCTCATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAACCCGATTATTCATATCTTAAGAGACTCTTCCGGGACCTATTCATTCGAGAAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACAAGGCCAAGTGTGAAACCAGCCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCTGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGATGTGCAACCTGATTCTGATAGGGCTCGCAGTTCTACTCGCAATGGCAGTGCTTCGAAAAGGCCAATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCGAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCCAAATCATCCTTTACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGAAAATGA

Protein sequence

>Msa0688930

MLADQLSRVYALSGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDNPIIHILRDSSGTYSFEKFDYVFDWTILKYPQIGSSSRTRPSVKPALNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSAQGLQHRSLDNMPSSKDVQPDSDRARSSTRNGSASKRPMISSSRPSSSGEPSESRSSRLISSSSRLSTTQRVQPGLESKSSFTRTAGTRGGRDDTLKSFELLSIGTGKRK*