AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688930 MtrunA17_Chr1g0166821 92.045 352 20 4 1 345 108 458 0.0 587
Msa0688930 MtrunA17_Chr1g0187571 78.273 359 62 7 1 345 108 464 9.94e-177 498
Msa0688930 MtrunA17_Chr7g0261501 66.854 356 100 10 1 339 107 461 3.06e-149 428
Msa0688930 MtrunA17_Chr1g0183631 60.563 355 115 11 1 339 107 452 6.21e-137 397
Msa0688930 MtrunA17_Chr8g0390211 53.395 324 124 12 1 307 107 420 8.00e-101 303
Msa0688930 MtrunA17_Chr1g0167261 62.406 266 64 8 1 255 108 348 5.12e-100 299
Msa0688930 MtrunA17_Chr4g0071031 55.172 319 115 10 1 293 107 423 3.55e-99 300
Msa0688930 MtrunA17_Chr2g0329981 65.652 230 67 5 1 219 107 335 5.34e-99 300
Msa0688930 MtrunA17_Chr6g0486611 55.108 323 113 15 1 303 107 417 5.27e-98 296
Msa0688930 MtrunA17_Chr8g0342821 70.755 212 51 6 1 205 107 314 9.72e-98 297
Msa0688930 MtrunA17_Chr2g0299661 51.652 333 125 12 1 307 107 429 1.23e-92 284
Msa0688930 MtrunA17_Chr1g0146151 47.205 322 146 8 1 307 107 419 2.63e-89 274
Msa0688930 MtrunA17_Chr3g0140071 48.071 337 130 10 1 305 107 430 2.63e-86 266
Msa0688930 MtrunA17_Chr7g0214531 41.379 145 79 3 14 155 162 303 5.90e-31 123
Msa0688930 MtrunA17_Chr7g0253211 41.497 147 80 3 12 155 446 589 6.81e-31 123
Msa0688930 MtrunA17_Chr3g0140431 42.069 145 78 3 14 155 157 298 9.80e-31 122
Msa0688930 MtrunA17_Chr1g0213321 39.869 153 85 4 6 155 232 380 1.79e-29 119
Msa0688930 MtrunA17_Chr1g0146301 40.000 145 81 3 14 155 243 384 6.35e-29 117
Msa0688930 MtrunA17_Chr8g0340491 36.932 176 93 4 14 186 254 414 2.35e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688930 AT4G14340.1 66.852 359 90 9 1 345 113 456 9.32e-160 455
Msa0688930 AT3G23340.2 67.139 353 91 8 1 345 93 428 4.92e-159 452
Msa0688930 AT3G23340.1 67.139 353 91 8 1 345 107 442 1.13e-158 452
Msa0688930 AT5G43320.1 63.200 375 107 11 1 345 107 480 3.65e-145 419
Msa0688930 AT4G28540.1 63.612 371 99 13 1 339 111 477 1.89e-143 414
Msa0688930 AT1G04440.1 61.983 363 119 7 1 345 107 468 3.95e-143 413
Msa0688930 AT1G03930.1 62.670 367 105 13 1 339 107 469 5.74e-130 380
Msa0688930 AT5G44100.1 60.270 370 114 10 1 339 107 474 2.80e-125 368
Msa0688930 AT5G44100.2 60.270 370 114 10 1 339 107 474 2.80e-125 368
Msa0688930 AT4G14340.2 77.376 221 41 5 1 213 113 332 2.38e-117 344
Msa0688930 AT5G43320.2 74.667 225 44 6 1 213 107 330 1.20e-106 317
Msa0688930 AT5G43320.3 74.667 225 44 6 1 213 107 330 1.20e-106 317
Msa0688930 AT4G26100.1 49.288 351 128 10 1 309 107 449 9.28e-99 300
Msa0688930 AT1G72710.1 59.567 277 94 9 1 264 107 378 1.95e-97 296
Msa0688930 AT5G57015.1 68.571 210 55 5 1 203 107 312 4.62e-96 292
Msa0688930 AT4G28880.3 67.464 209 60 4 1 202 107 314 7.50e-96 291
Msa0688930 AT4G28880.2 67.464 209 60 4 1 202 107 314 7.50e-96 291
Msa0688930 AT4G28880.1 67.464 209 60 4 1 202 107 314 7.50e-96 291
Msa0688930 AT4G28880.4 67.464 209 60 4 1 202 107 314 7.50e-96 291
Msa0688930 AT4G28860.2 67.442 215 57 7 1 208 107 315 2.44e-95 288
Msa0688930 AT4G28860.1 55.116 303 96 13 1 278 107 394 4.95e-95 289
Msa0688930 AT2G19470.1 64.035 228 65 7 1 214 107 331 7.51e-94 286
Msa0688930 AT4G08800.1 62.694 193 58 5 1 186 81 266 7.55e-80 245
Msa0688930 AT2G25760.2 44.138 145 78 2 14 155 233 377 1.24e-33 131
Msa0688930 AT2G25760.1 42.759 145 77 3 14 155 233 374 1.02e-30 123
Msa0688930 AT5G18190.2 40.816 147 81 3 12 155 252 395 2.22e-30 122
Msa0688930 AT5G18190.1 40.816 147 81 3 12 155 252 395 2.22e-30 122
Msa0688930 AT3G03940.1 39.456 147 83 3 12 155 262 405 1.14e-29 120
Msa0688930 AT3G13670.1 35.329 167 97 5 6 165 255 417 1.43e-27 114

Find 141 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGATGGTCCTGGGTTTA+AGG 0.165568 4_4:-55318171 None:intergenic
AGCAGCAGACCAAGCTCTTC+TGG 0.195678 4_4:+55318761 Msa0688930:CDS
CATGAAGAGTCTTTATCTTT+AGG 0.208657 4_4:+55319177 Msa0688930:three_prime_UTR
TTGAAGAAGCATATACAATT+TGG 0.250533 4_4:-55315568 None:intergenic
GAGAAATATCAATTAGCTTT+TGG 0.252061 4_4:-55319082 None:intergenic
TATCACCCTTCCATTGCATT+TGG 0.277778 4_4:+55319310 Msa0688930:three_prime_UTR
GTCATGGCCATTGACCTTCT+TGG 0.314864 4_4:+55315959 Msa0688930:five_prime_UTR
ATCACCCTTCCATTGCATTT+GGG 0.329797 4_4:+55319311 Msa0688930:three_prime_UTR
AAGCATTGAAGTACCTCTAT+TGG 0.339689 4_4:-55317488 None:intergenic
GAAATTCGAGATAGATTATC+TGG 0.347764 4_4:+55318457 Msa0688930:CDS
TGTAGCAACCTGATTCTGAT+AGG 0.353677 4_4:+55318687 Msa0688930:intron
TCTCTTAAGATATGAATAAT+CGG 0.357282 4_4:-55317852 None:intergenic
ATATTGAAGTATCCACAAAT+TGG 0.362130 4_4:+55318027 Msa0688930:CDS
AGTTTGACTATGTATTTGAT+TGG 0.365329 4_4:+55318001 Msa0688930:intron
ATATCTTAAGAGACTCTTCC+GGG 0.366043 4_4:+55317862 Msa0688930:CDS
AGAAACACTAACCACATCTT+TGG 0.368375 4_4:-55318557 None:intergenic
GCCTTAAACCCAGGACCATC+TGG 0.374719 4_4:+55318170 Msa0688930:CDS
GAGCGATTAGAACGGCCTTC+AGG 0.389926 4_4:+55318194 Msa0688930:CDS
CATATCTTAAGAGACTCTTC+CGG 0.390501 4_4:+55317861 Msa0688930:CDS
GGTCTGCTGCTTGATATCAT+TGG 0.391696 4_4:-55318749 None:intergenic
CTTCCATGATTATCTAAGCT+TGG 0.392129 4_4:+55319147 Msa0688930:three_prime_UTR
CCTGTGTTGTGGTCCATTCA+TGG 0.394126 4_4:+55319059 Msa0688930:three_prime_UTR
GACAACTTTCTGATGGGTTT+AGG 0.396422 4_4:+55316212 Msa0688930:CDS
ACCGCAATGATCGGCAATAG+TGG 0.400015 4_4:-55317818 None:intergenic
GGGTGGCTCCTAATTTAGAT+TGG 0.401275 4_4:+55319348 Msa0688930:three_prime_UTR
TTTAAGGCTGGTTTCACACT+TGG 0.402104 4_4:-55318155 None:intergenic
GGTGGCTCCTAATTTAGATT+GGG 0.404634 4_4:+55319349 Msa0688930:three_prime_UTR
TTTAGGCCGCAAGGCAAATC+AGG 0.406238 4_4:+55316229 Msa0688930:CDS
TAGGAGCCACCCACTATTAG+AGG 0.407235 4_4:-55319337 None:intergenic
AATCGCTCTCCAGATGGTCC+TGG 0.408461 4_4:-55318179 None:intergenic
TAGAAGACAAATGGAACATA+TGG 0.417936 4_4:-55319569 None:intergenic
TCAATTGAGTAGAAGACAAA+TGG 0.419686 4_4:-55319578 None:intergenic
GGTACGGGTAAAGGATGATT+TGG 0.422925 4_4:-55318870 None:intergenic
AGCTTTGAGCTCCTGTCAAT+TGG 0.426702 4_4:+55318929 Msa0688930:CDS
ATTTGGGACCCCTCTAATAG+TGG 0.431719 4_4:+55319327 Msa0688930:three_prime_UTR
GCAGCAGACCAAGCTCTTCT+GGG 0.432095 4_4:+55318762 Msa0688930:CDS
AGAATGTTTGGAGCCTCCTT+AGG 0.434861 4_4:+55319405 Msa0688930:three_prime_UTR
GATGGTCCTGGGTTTAAGGC+TGG 0.435674 4_4:-55318167 None:intergenic
TATCAGTGAACAAGAATGTT+TGG 0.436233 4_4:+55319393 Msa0688930:three_prime_UTR
GATAACCTTCTCGAATGAAT+AGG 0.436809 4_4:-55317886 None:intergenic
GAGCTCCTGTCAATTGGTAC+AGG 0.445961 4_4:+55318935 Msa0688930:CDS
TGTCCCTGCGGTACGGGTAA+AGG 0.446946 4_4:-55318879 None:intergenic
ACTCACCCTTGTTCTAGAAC+TGG 0.449488 4_4:-55318052 None:intergenic
ACCTCGTGTCCCTGCGGTAC+GGG 0.451847 4_4:-55318885 None:intergenic
CTGCGAGCCCTATCAGAATC+AGG 0.454495 4_4:-55318695 None:intergenic
TTAAATAAGTCTTCGAGACT+TGG 0.457011 4_4:-55315983 None:intergenic
CTAGAACTGGATCCAATTTG+TGG 0.461995 4_4:-55318039 None:intergenic
TGAGGATGCTTTGTCTTCAC+AGG 0.464666 4_4:-55315531 None:intergenic
TTTCATATTAGCTACCTGTA+TGG 0.470915 4_4:-55316645 None:intergenic
TTCTGTATTAATGTTTAACT+AGG 0.471777 4_4:+55319517 Msa0688930:three_prime_UTR
ATACCTCATATAAAGTGGTC+TGG 0.472466 4_4:+55315917 Msa0688930:five_prime_UTR
GAACCAAGCTTAGATAATCA+TGG 0.474739 4_4:-55319150 None:intergenic
ATATATTGAGTAAAATGAAC+AGG 0.475550 4_4:-55319030 None:intergenic
AAATTGTATATGCTTCTTCA+AGG 0.478491 4_4:+55315570 Msa0688930:five_prime_UTR
AGCATCTGAAGAAGCATTTG+AGG 0.479553 4_4:-55319124 None:intergenic
CTGCGCAAGGACTGCAGCAT+AGG 0.482559 4_4:+55318512 Msa0688930:CDS
GAAAATGCTTACTCCAATAG+AGG 0.494552 4_4:+55317475 Msa0688930:CDS
ACTTGCATATCGAGCAGTTC+CGG 0.496384 4_4:-55317096 None:intergenic
CACCTCGTGTCCCTGCGGTA+CGG 0.496390 4_4:-55318886 None:intergenic
CGACTAGACCGGCTTTCACT+AGG 0.501636 4_4:-55318788 None:intergenic
CCATGGCAAGGCATGAAAGC+TGG 0.502381 4_4:+55317416 Msa0688930:CDS
CTAGGTTCCCCAGAAGAGCT+TGG 0.503285 4_4:-55318770 None:intergenic
AGTAGAGTATATGCACTCTC+GGG 0.504876 4_4:+55316164 Msa0688930:CDS
CTTGCAAAGCATATTAGACT+TGG 0.506872 4_4:-55319284 None:intergenic
CTCTTAAGATATGAATAATC+GGG 0.508342 4_4:-55317851 None:intergenic
AGATAAAGACTCTTCATGAA+TGG 0.508742 4_4:-55319172 None:intergenic
TAAACCCATCAGAAAGTTGT+CGG 0.509282 4_4:-55316210 None:intergenic
ATCGCTCTCCAGATGGTCCT+GGG 0.510903 4_4:-55318178 None:intergenic
ACTCCAGACCACTTTATATG+AGG 0.512923 4_4:-55315920 None:intergenic
AAATATGATGTGAATTCTGT+TGG 0.516022 4_4:-55317795 None:intergenic
TATATTTCTATCCTGTGTTG+TGG 0.518820 4_4:+55319048 Msa0688930:three_prime_UTR
GAGTAGAGTATATGCACTCT+CGG 0.522104 4_4:+55316163 Msa0688930:intron
TCATCCTTTACCCGTACCGC+AGG 0.523644 4_4:+55318875 Msa0688930:CDS
CCAGCTTTCATGCCTTGCCA+TGG 0.523784 4_4:-55317416 None:intergenic
CACATAAGCATATACCATAC+AGG 0.528806 4_4:+55316631 Msa0688930:CDS
GTAGCAACCTGATTCTGATA+GGG 0.529158 4_4:+55318688 Msa0688930:intron
GATAGATTATCTGGTGCAGT+GGG 0.530898 4_4:+55318466 Msa0688930:CDS
TGGAGTGTGTGTTTAACAAA+CGG 0.538160 4_4:-55319549 None:intergenic
CTGGAATACCTCATATAAAG+TGG 0.539142 4_4:+55315912 Msa0688930:five_prime_UTR
CAGGTATACATTATTGACTA+CGG 0.539979 4_4:+55316579 Msa0688930:intron
AAAGCCCGACAACTTTCTGA+TGG 0.540005 4_4:+55316205 Msa0688930:CDS
TATAAAGTGGTCTGGAGTCG+AGG 0.552004 4_4:+55315925 Msa0688930:five_prime_UTR
ACTTGGTCCAAGAAGGTCAA+TGG 0.555497 4_4:-55315966 None:intergenic
GCATCTGAAGAAGCATTTGA+GGG 0.557442 4_4:-55319123 None:intergenic
CGGGACCTATTCATTCGAGA+AGG 0.558168 4_4:+55317881 Msa0688930:CDS
AAACCCATCAGAAAGTTGTC+GGG 0.559935 4_4:-55316209 None:intergenic
TTGGACTCGTAGAGAAGTTG+AGG 0.560210 4_4:-55315549 None:intergenic
CTTCGAGACTTGGTCCAAGA+AGG 0.563259 4_4:-55315973 None:intergenic
AAGCCCGACAACTTTCTGAT+GGG 0.563914 4_4:+55316206 Msa0688930:CDS
GCAATGGCAGTGCTTCGAAA+AGG 0.564353 4_4:+55318726 Msa0688930:CDS
TAGATTATCTGGTGCAGTGG+GGG 0.565713 4_4:+55318468 Msa0688930:CDS
TTTGGGACCCCTCTAATAGT+GGG 0.567908 4_4:+55319328 Msa0688930:three_prime_UTR
CGTTCTAATCGCTCTCCAGA+TGG 0.568142 4_4:-55318185 None:intergenic
TATCTTCAAACCGCAATGAT+CGG 0.568440 4_4:-55317827 None:intergenic
GTTAACACTCACCTTGGAGT+TGG 0.571211 4_4:+55317119 Msa0688930:CDS
GGGGTCCCAAATGCAATGGA+AGG 0.572247 4_4:-55319316 None:intergenic
AGAAGGAATGGCTCTGCGCA+AGG 0.573456 4_4:+55318499 Msa0688930:CDS
CTGGGGAACCTAGTGAAAGC+CGG 0.580386 4_4:+55318780 Msa0688930:CDS
GTGAAACCAGCCTTAAACCC+AGG 0.580552 4_4:+55318161 Msa0688930:CDS
TAGATACCTGATTTGCCTTG+CGG 0.583445 4_4:-55316235 None:intergenic
TCGAGATCAATCGACTAGAC+CGG 0.585197 4_4:-55318799 None:intergenic
TGGATCCAGTTCTAGAACAA+GGG 0.585435 4_4:+55318047 Msa0688930:CDS
GCAAGTGTTAACACTCACCT+TGG 0.587854 4_4:+55317113 Msa0688930:CDS
GATGATTTGGATTCAAGACC+TGG 0.588580 4_4:-55318857 None:intergenic
ATAAAGTGGTCTGGAGTCGA+GGG 0.588583 4_4:+55315926 Msa0688930:five_prime_UTR
TTGGATCCAGTTCTAGAACA+AGG 0.591842 4_4:+55318046 Msa0688930:CDS
TAGAGGGGTCCCAAATGCAA+TGG 0.594829 4_4:-55319320 None:intergenic
AGGAGCCACCCACTATTAGA+GGG 0.595602 4_4:-55319336 None:intergenic
TGCCTCACTCACCAACTCCA+AGG 0.596982 4_4:-55317130 None:intergenic
GTAAAATGAACAGGTGTGAC+GGG 0.600503 4_4:-55319021 None:intergenic
CTTCTCGAATGAATAGGTCC+CGG 0.601529 4_4:-55317880 None:intergenic
AGTAAAATGAACAGGTGTGA+CGG 0.603828 4_4:-55319022 None:intergenic
AGATAGATTATCTGGTGCAG+TGG 0.605958 4_4:+55318465 Msa0688930:CDS
AGCTCCTGTCAATTGGTACA+GGG 0.606402 4_4:+55318936 Msa0688930:CDS
AGGGAAAACAAGAATCTCAC+CGG 0.607679 4_4:+55317077 Msa0688930:intron
CCATGAATGGACCACAACAC+AGG 0.608663 4_4:-55319059 None:intergenic
GTGGCTCCTAATTTAGATTG+GGG 0.609750 4_4:+55319350 Msa0688930:three_prime_UTR
TCCACTATTGCCGATCATTG+CGG 0.612017 4_4:+55317817 Msa0688930:CDS
CGAGGGTGAGTACAATGTCA+TGG 0.613445 4_4:+55315943 Msa0688930:five_prime_UTR
GGGACCCCTCTAATAGTGGG+TGG 0.614908 4_4:+55319331 Msa0688930:three_prime_UTR
GAAAATGAGCGAAAACTCGA+TGG 0.619282 4_4:+55318963 Msa0688930:exon
TCTGATGGGTTTAGGCCGCA+AGG 0.625626 4_4:+55316220 Msa0688930:CDS
CAGCAGACCAAGCTCTTCTG+GGG 0.625732 4_4:+55318763 Msa0688930:CDS
GCTCGCAGTTCTACTCGCAA+TGG 0.627017 4_4:+55318710 Msa0688930:CDS
ACCCGTACCGCAGGGACACG+AGG 0.630056 4_4:+55318884 Msa0688930:CDS
GGGTCCCAAATGCAATGGAA+GGG 0.636237 4_4:-55319315 None:intergenic
CTAACCACATCTTTGGAAGA+CGG 0.637061 4_4:-55318550 None:intergenic
AGAGATGATCTAGAATCACT+TGG 0.637396 4_4:+55317277 Msa0688930:CDS
ACTACTCAGAGGGTTCAACC+AGG 0.654494 4_4:+55318839 Msa0688930:CDS
TTGTATATGCTTCTTCAAGG+AGG 0.656173 4_4:+55315573 Msa0688930:five_prime_UTR
GTCGTCTATCGACTACTCAG+AGG 0.661119 4_4:+55318828 Msa0688930:CDS
TCGTCTATCGACTACTCAGA+GGG 0.669134 4_4:+55318829 Msa0688930:CDS
AAATGAACAGGTGTGACGGG+TGG 0.680166 4_4:-55319018 None:intergenic
CATCCTTTACCCGTACCGCA+GGG 0.680597 4_4:+55318876 Msa0688930:CDS
TATGCCGTCTTCCAAAGATG+TGG 0.681158 4_4:+55318546 Msa0688930:CDS
GTAGAGTATATGCACTCTCG+GGG 0.691454 4_4:+55316165 Msa0688930:CDS
CATCTGGAGAGCGATTAGAA+CGG 0.692759 4_4:+55318186 Msa0688930:CDS
GGAGCCACCCACTATTAGAG+GGG 0.722209 4_4:-55319335 None:intergenic
GCGACCACCTCGTGTCCCTG+CGG 0.725612 4_4:-55318891 None:intergenic
ATAGATTATCTGGTGCAGTG+GGG 0.728220 4_4:+55318467 Msa0688930:CDS
CGTACCGCAGGGACACGAGG+TGG 0.738349 4_4:+55318887 Msa0688930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTCATTTAATTAAAT+TGG + chr4_4:55317206-55317225 Msa0688930:intron 10.0%
!! AAGTTTCATTTAATTAAATT+GGG + chr4_4:55317207-55317226 Msa0688930:intron 10.0%
!! AAAGTTTCATTTAATTAAAT+TGG + chr4_4:55317206-55317225 Msa0688930:intron 10.0%
!! AAGTTTCATTTAATTAAATT+GGG + chr4_4:55317207-55317226 Msa0688930:intron 10.0%
!! TAAAAAACATGTAAACTTAA+AGG - chr4_4:55316745-55316764 None:intergenic 15.0%
!! AACAATTTATGTAAAGAATA+TGG - chr4_4:55317670-55317689 None:intergenic 15.0%
!! TAAAAAACATGTAAACTTAA+AGG - chr4_4:55316745-55316764 None:intergenic 15.0%
!! AACAATTTATGTAAAGAATA+TGG - chr4_4:55317670-55317689 None:intergenic 15.0%
!!! TGTTAATTTATATTTGAAGC+TGG + chr4_4:55315893-55315912 Msa0688930:intron 20.0%
!!! TTAGCTTGAAGTTAAAAATA+TGG - chr4_4:55316090-55316109 None:intergenic 20.0%
!!! GATTTTCTTGTAATTATTAC+AGG + chr4_4:55316560-55316579 Msa0688930:intron 20.0%
!!! TATATTGACTTTTTCTAACT+TGG + chr4_4:55316943-55316962 Msa0688930:intron 20.0%
!! AAATTGTGAAAGATGAAAAT+TGG - chr4_4:55317724-55317743 None:intergenic 20.0%
!! TCTCTTAAGATATGAATAAT+CGG - chr4_4:55317855-55317874 None:intergenic 20.0%
!!! TTGTCTTTTGTTTTGTTTTT+TGG + chr4_4:55318605-55318624 Msa0688930:intron 20.0%
!! ATATATTGAGTAAAATGAAC+AGG - chr4_4:55319033-55319052 None:intergenic 20.0%
!! TTCTGTATTAATGTTTAACT+AGG + chr4_4:55319517-55319536 Msa0688930:three_prime_UTR 20.0%
!!! TGTTAATTTATATTTGAAGC+TGG + chr4_4:55315893-55315912 Msa0688930:intron 20.0%
!!! TTAGCTTGAAGTTAAAAATA+TGG - chr4_4:55316090-55316109 None:intergenic 20.0%
!!! GATTTTCTTGTAATTATTAC+AGG + chr4_4:55316560-55316579 Msa0688930:intron 20.0%
!!! TATATTGACTTTTTCTAACT+TGG + chr4_4:55316943-55316962 Msa0688930:intron 20.0%
!! AAATTGTGAAAGATGAAAAT+TGG - chr4_4:55317724-55317743 None:intergenic 20.0%
!! TCTCTTAAGATATGAATAAT+CGG - chr4_4:55317855-55317874 None:intergenic 20.0%
!!! TTGTCTTTTGTTTTGTTTTT+TGG + chr4_4:55318605-55318624 Msa0688930:intron 20.0%
!! ATATATTGAGTAAAATGAAC+AGG - chr4_4:55319033-55319052 None:intergenic 20.0%
!! TTCTGTATTAATGTTTAACT+AGG + chr4_4:55319517-55319536 Msa0688930:three_prime_UTR 20.0%
!! TTGAAGAAGCATATACAATT+TGG - chr4_4:55315571-55315590 None:intergenic 25.0%
! AAATTGTATATGCTTCTTCA+AGG + chr4_4:55315570-55315589 Msa0688930:five_prime_UTR 25.0%
!! AAACAAATCACTATTTTCTG+TGG + chr4_4:55315782-55315801 Msa0688930:intron 25.0%
! AAAGTGGTAAATCATATTGA+AGG - chr4_4:55316130-55316149 None:intergenic 25.0%
!! GTATCTAATGTATGACTTTT+CGG + chr4_4:55316251-55316270 Msa0688930:intron 25.0%
! TTTATTCCTGTAATTGACAT+CGG - chr4_4:55316401-55316420 None:intergenic 25.0%
!! TTTTACCTAGAAACAAGAAA+TGG + chr4_4:55316446-55316465 Msa0688930:intron 25.0%
! CAAAAAATTAAAGGCCTATT+TGG - chr4_4:55316475-55316494 None:intergenic 25.0%
!!! CAAATAGGCCTTTAATTTTT+TGG + chr4_4:55316473-55316492 Msa0688930:intron 25.0%
! AGCACAATAAATTTAGTGAA+CGG - chr4_4:55316514-55316533 None:intergenic 25.0%
! AAAATCAGAAAACTTGACAT+AGG - chr4_4:55316546-55316565 None:intergenic 25.0%
! TAGCTAATATGAAATTTGGT+TGG + chr4_4:55316654-55316673 Msa0688930:intron 25.0%
! AGCTAATATGAAATTTGGTT+GGG + chr4_4:55316655-55316674 Msa0688930:intron 25.0%
! CAAATTAAGAAATCCAAAAG+GGG - chr4_4:55316794-55316813 None:intergenic 25.0%
! CCAAATTAAGAAATCCAAAA+GGG - chr4_4:55316795-55316814 None:intergenic 25.0%
! TCCAAATTAAGAAATCCAAA+AGG - chr4_4:55316796-55316815 None:intergenic 25.0%
! AATGTAAAGAGATGAAAAAC+TGG - chr4_4:55316862-55316881 None:intergenic 25.0%
!!! TGCACTATTTTTCTTACAAT+AGG + chr4_4:55317057-55317076 Msa0688930:intron 25.0%
!!! GCACTATTTTTCTTACAATA+GGG + chr4_4:55317058-55317077 Msa0688930:intron 25.0%
! TTTGCAAAGAATTAACAGTT+TGG + chr4_4:55317741-55317760 Msa0688930:intron 25.0%
! AAATATGATGTGAATTCTGT+TGG - chr4_4:55317798-55317817 None:intergenic 25.0%
! CTCTTAAGATATGAATAATC+GGG - chr4_4:55317854-55317873 None:intergenic 25.0%
! AGTTTGACTATGTATTTGAT+TGG + chr4_4:55318001-55318020 Msa0688930:intron 25.0%
!! ATATTGAAGTATCCACAAAT+TGG + chr4_4:55318027-55318046 Msa0688930:CDS 25.0%
! AAATAGATTTCAAAACCTGA+AGG - chr4_4:55318212-55318231 None:intergenic 25.0%
! TATGCTGATAACACATTAAA+TGG + chr4_4:55318253-55318272 Msa0688930:intron 25.0%
! AATGAAAAAACTCTGATCAT+TGG + chr4_4:55318400-55318419 Msa0688930:intron 25.0%
!!! CTAATCCCTTTTATTTTAGT+CGG + chr4_4:55318430-55318449 Msa0688930:intron 25.0%
!! CACATGATTTTCTTTTTGTA+TGG + chr4_4:55318581-55318600 Msa0688930:intron 25.0%
!!! GAGAAATATCAATTAGCTTT+TGG - chr4_4:55319085-55319104 None:intergenic 25.0%
!!! ATTCTCTACAATTTTTCAGT+TGG + chr4_4:55319243-55319262 Msa0688930:three_prime_UTR 25.0%
!!! AATTTTTCAGTTGGACAAAA+GGG + chr4_4:55319252-55319271 Msa0688930:three_prime_UTR 25.0%
!! TTGAAGAAGCATATACAATT+TGG - chr4_4:55315571-55315590 None:intergenic 25.0%
! AAATTGTATATGCTTCTTCA+AGG + chr4_4:55315570-55315589 Msa0688930:five_prime_UTR 25.0%
!! AAACAAATCACTATTTTCTG+TGG + chr4_4:55315782-55315801 Msa0688930:intron 25.0%
! AAAGTGGTAAATCATATTGA+AGG - chr4_4:55316130-55316149 None:intergenic 25.0%
!! GTATCTAATGTATGACTTTT+CGG + chr4_4:55316251-55316270 Msa0688930:intron 25.0%
! TTTATTCCTGTAATTGACAT+CGG - chr4_4:55316401-55316420 None:intergenic 25.0%
!! TTTTACCTAGAAACAAGAAA+TGG + chr4_4:55316446-55316465 Msa0688930:intron 25.0%
! CAAAAAATTAAAGGCCTATT+TGG - chr4_4:55316475-55316494 None:intergenic 25.0%
!!! CAAATAGGCCTTTAATTTTT+TGG + chr4_4:55316473-55316492 Msa0688930:intron 25.0%
! AGCACAATAAATTTAGTGAA+CGG - chr4_4:55316514-55316533 None:intergenic 25.0%
! AAAATCAGAAAACTTGACAT+AGG - chr4_4:55316546-55316565 None:intergenic 25.0%
! TAGCTAATATGAAATTTGGT+TGG + chr4_4:55316654-55316673 Msa0688930:intron 25.0%
! AGCTAATATGAAATTTGGTT+GGG + chr4_4:55316655-55316674 Msa0688930:intron 25.0%
! CAAATTAAGAAATCCAAAAG+GGG - chr4_4:55316794-55316813 None:intergenic 25.0%
! CCAAATTAAGAAATCCAAAA+GGG - chr4_4:55316795-55316814 None:intergenic 25.0%
! TCCAAATTAAGAAATCCAAA+AGG - chr4_4:55316796-55316815 None:intergenic 25.0%
! AATGTAAAGAGATGAAAAAC+TGG - chr4_4:55316862-55316881 None:intergenic 25.0%
!!! TGCACTATTTTTCTTACAAT+AGG + chr4_4:55317057-55317076 Msa0688930:intron 25.0%
!!! GCACTATTTTTCTTACAATA+GGG + chr4_4:55317058-55317077 Msa0688930:intron 25.0%
! TTTGCAAAGAATTAACAGTT+TGG + chr4_4:55317741-55317760 Msa0688930:intron 25.0%
! AAATATGATGTGAATTCTGT+TGG - chr4_4:55317798-55317817 None:intergenic 25.0%
! CTCTTAAGATATGAATAATC+GGG - chr4_4:55317854-55317873 None:intergenic 25.0%
! AGTTTGACTATGTATTTGAT+TGG + chr4_4:55318001-55318020 Msa0688930:intron 25.0%
!! ATATTGAAGTATCCACAAAT+TGG + chr4_4:55318027-55318046 Msa0688930:CDS 25.0%
! AAATAGATTTCAAAACCTGA+AGG - chr4_4:55318212-55318231 None:intergenic 25.0%
! TATGCTGATAACACATTAAA+TGG + chr4_4:55318253-55318272 Msa0688930:intron 25.0%
! AATGAAAAAACTCTGATCAT+TGG + chr4_4:55318400-55318419 Msa0688930:intron 25.0%
!!! CTAATCCCTTTTATTTTAGT+CGG + chr4_4:55318430-55318449 Msa0688930:intron 25.0%
!! CACATGATTTTCTTTTTGTA+TGG + chr4_4:55318581-55318600 Msa0688930:intron 25.0%
!!! GAGAAATATCAATTAGCTTT+TGG - chr4_4:55319085-55319104 None:intergenic 25.0%
!!! ATTCTCTACAATTTTTCAGT+TGG + chr4_4:55319243-55319262 Msa0688930:three_prime_UTR 25.0%
!!! AATTTTTCAGTTGGACAAAA+GGG + chr4_4:55319252-55319271 Msa0688930:three_prime_UTR 25.0%
AGGAGGAAGTAAGTTTATAT+CGG + chr4_4:55315590-55315609 Msa0688930:intron 30.0%
!! CCAAAAGTGTTGTTAAATAG+CGG + chr4_4:55315633-55315652 Msa0688930:intron 30.0%
!!! CTTTTGAGTTCATCTGATTA+AGG + chr4_4:55315870-55315889 Msa0688930:intron 30.0%
TTAAATAAGTCTTCGAGACT+TGG - chr4_4:55315986-55316005 None:intergenic 30.0%
ATACTCTACTCTGTTTATCT+AGG - chr4_4:55316154-55316173 None:intergenic 30.0%
AATCAGATTCTTAGAACTTG+AGG - chr4_4:55316343-55316362 None:intergenic 30.0%
ACAAGAAATGGAAACCAAAT+AGG + chr4_4:55316458-55316477 Msa0688930:intron 30.0%
ATTTAGTGAACGGGATTATA+TGG - chr4_4:55316504-55316523 None:intergenic 30.0%
GCACAATAAATTTAGTGAAC+GGG - chr4_4:55316513-55316532 None:intergenic 30.0%
! CAGGTATACATTATTGACTA+CGG + chr4_4:55316579-55316598 Msa0688930:intron 30.0%
TTTCATATTAGCTACCTGTA+TGG - chr4_4:55316648-55316667 None:intergenic 30.0%
CAGGTAGCTAATATGAAATT+TGG + chr4_4:55316650-55316669 Msa0688930:intron 30.0%
CAATATACTCAAGGAATCAA+AGG - chr4_4:55316697-55316716 None:intergenic 30.0%
CAAAAGGGGAAAAAATACAA+AGG - chr4_4:55316780-55316799 None:intergenic 30.0%
!!! CTTTGTATTTTTTCCCCTTT+TGG + chr4_4:55316778-55316797 Msa0688930:intron 30.0%
! CCCTTTTGGATTTCTTAATT+TGG + chr4_4:55316792-55316811 Msa0688930:intron 30.0%
ATCTGTTATTGCACATTCAT+TGG - chr4_4:55316924-55316943 None:intergenic 30.0%
!! GTACTAATGTACTTTTTGAG+AGG + chr4_4:55317304-55317323 Msa0688930:CDS 30.0%
!! TAATGTACTTTTTGAGAGGA+AGG + chr4_4:55317308-55317327 Msa0688930:CDS 30.0%
ACAGTTTGGATTTCTGTAAT+AGG + chr4_4:55317755-55317774 Msa0688930:intron 30.0%
TTTGGAAGAACTTTCAACTA+AGG - chr4_4:55317937-55317956 None:intergenic 30.0%
! ATAAGGTACTTTCAAAGCTT+TGG - chr4_4:55317955-55317974 None:intergenic 30.0%
! CAAAAGCGCAATTTCTAATA+AGG - chr4_4:55317972-55317991 None:intergenic 30.0%
! ATTAGAAATTGCGCTTTTGT+AGG + chr4_4:55317973-55317992 Msa0688930:intron 30.0%
TCATCCTCATCTATAAGTTA+TGG + chr4_4:55318089-55318108 Msa0688930:intron 30.0%
AGAACCATAACTTATAGATG+AGG - chr4_4:55318096-55318115 None:intergenic 30.0%
!!! GTTGGTGCTATTTTAATTCT+AGG + chr4_4:55318370-55318389 Msa0688930:intron 30.0%
CGACTAAAATAAAAGGGATT+AGG - chr4_4:55318432-55318451 None:intergenic 30.0%
CTTGTCCGACTAAAATAAAA+GGG - chr4_4:55318438-55318457 None:intergenic 30.0%
TCTTGTCCGACTAAAATAAA+AGG - chr4_4:55318439-55318458 None:intergenic 30.0%
GAAATTCGAGATAGATTATC+TGG + chr4_4:55318457-55318476 Msa0688930:CDS 30.0%
! TATATTTCTATCCTGTGTTG+TGG + chr4_4:55319048-55319067 Msa0688930:three_prime_UTR 30.0%
AGATAAAGACTCTTCATGAA+TGG - chr4_4:55319175-55319194 None:intergenic 30.0%
CATGAAGAGTCTTTATCTTT+AGG + chr4_4:55319177-55319196 Msa0688930:three_prime_UTR 30.0%
!! CAATTTTTCAGTTGGACAAA+AGG + chr4_4:55319251-55319270 Msa0688930:three_prime_UTR 30.0%
! GTTTTACCCCAATCTAAATT+AGG - chr4_4:55319359-55319378 None:intergenic 30.0%
TATCAGTGAACAAGAATGTT+TGG + chr4_4:55319393-55319412 Msa0688930:three_prime_UTR 30.0%
AAAAACTTCAAAACCTAAGG+AGG - chr4_4:55319421-55319440 None:intergenic 30.0%
AGCAAAAACTTCAAAACCTA+AGG - chr4_4:55319424-55319443 None:intergenic 30.0%
!!! TTAGGTTTTGAAGTTTTTGC+TGG + chr4_4:55319423-55319442 Msa0688930:three_prime_UTR 30.0%
TAGAAGACAAATGGAACATA+TGG - chr4_4:55319572-55319591 None:intergenic 30.0%
AGGAGGAAGTAAGTTTATAT+CGG + chr4_4:55315590-55315609 Msa0688930:intron 30.0%
!! CCAAAAGTGTTGTTAAATAG+CGG + chr4_4:55315633-55315652 Msa0688930:intron 30.0%
!!! CTTTTGAGTTCATCTGATTA+AGG + chr4_4:55315870-55315889 Msa0688930:intron 30.0%
TTAAATAAGTCTTCGAGACT+TGG - chr4_4:55315986-55316005 None:intergenic 30.0%
ATACTCTACTCTGTTTATCT+AGG - chr4_4:55316154-55316173 None:intergenic 30.0%
AATCAGATTCTTAGAACTTG+AGG - chr4_4:55316343-55316362 None:intergenic 30.0%
ACAAGAAATGGAAACCAAAT+AGG + chr4_4:55316458-55316477 Msa0688930:intron 30.0%
ATTTAGTGAACGGGATTATA+TGG - chr4_4:55316504-55316523 None:intergenic 30.0%
GCACAATAAATTTAGTGAAC+GGG - chr4_4:55316513-55316532 None:intergenic 30.0%
! CAGGTATACATTATTGACTA+CGG + chr4_4:55316579-55316598 Msa0688930:intron 30.0%
TTTCATATTAGCTACCTGTA+TGG - chr4_4:55316648-55316667 None:intergenic 30.0%
CAGGTAGCTAATATGAAATT+TGG + chr4_4:55316650-55316669 Msa0688930:intron 30.0%
CAATATACTCAAGGAATCAA+AGG - chr4_4:55316697-55316716 None:intergenic 30.0%
CAAAAGGGGAAAAAATACAA+AGG - chr4_4:55316780-55316799 None:intergenic 30.0%
!!! CTTTGTATTTTTTCCCCTTT+TGG + chr4_4:55316778-55316797 Msa0688930:intron 30.0%
! CCCTTTTGGATTTCTTAATT+TGG + chr4_4:55316792-55316811 Msa0688930:intron 30.0%
ATCTGTTATTGCACATTCAT+TGG - chr4_4:55316924-55316943 None:intergenic 30.0%
!! GTACTAATGTACTTTTTGAG+AGG + chr4_4:55317304-55317323 Msa0688930:CDS 30.0%
!! TAATGTACTTTTTGAGAGGA+AGG + chr4_4:55317308-55317327 Msa0688930:CDS 30.0%
ACAGTTTGGATTTCTGTAAT+AGG + chr4_4:55317755-55317774 Msa0688930:intron 30.0%
TTTGGAAGAACTTTCAACTA+AGG - chr4_4:55317937-55317956 None:intergenic 30.0%
! ATAAGGTACTTTCAAAGCTT+TGG - chr4_4:55317955-55317974 None:intergenic 30.0%
! CAAAAGCGCAATTTCTAATA+AGG - chr4_4:55317972-55317991 None:intergenic 30.0%
! ATTAGAAATTGCGCTTTTGT+AGG + chr4_4:55317973-55317992 Msa0688930:intron 30.0%
TCATCCTCATCTATAAGTTA+TGG + chr4_4:55318089-55318108 Msa0688930:intron 30.0%
AGAACCATAACTTATAGATG+AGG - chr4_4:55318096-55318115 None:intergenic 30.0%
!!! GTTGGTGCTATTTTAATTCT+AGG + chr4_4:55318370-55318389 Msa0688930:intron 30.0%
CGACTAAAATAAAAGGGATT+AGG - chr4_4:55318432-55318451 None:intergenic 30.0%
CTTGTCCGACTAAAATAAAA+GGG - chr4_4:55318438-55318457 None:intergenic 30.0%
TCTTGTCCGACTAAAATAAA+AGG - chr4_4:55318439-55318458 None:intergenic 30.0%
GAAATTCGAGATAGATTATC+TGG + chr4_4:55318457-55318476 Msa0688930:CDS 30.0%
! TATATTTCTATCCTGTGTTG+TGG + chr4_4:55319048-55319067 Msa0688930:three_prime_UTR 30.0%
AGATAAAGACTCTTCATGAA+TGG - chr4_4:55319175-55319194 None:intergenic 30.0%
CATGAAGAGTCTTTATCTTT+AGG + chr4_4:55319177-55319196 Msa0688930:three_prime_UTR 30.0%
!! CAATTTTTCAGTTGGACAAA+AGG + chr4_4:55319251-55319270 Msa0688930:three_prime_UTR 30.0%
! GTTTTACCCCAATCTAAATT+AGG - chr4_4:55319359-55319378 None:intergenic 30.0%
TATCAGTGAACAAGAATGTT+TGG + chr4_4:55319393-55319412 Msa0688930:three_prime_UTR 30.0%
AAAAACTTCAAAACCTAAGG+AGG - chr4_4:55319421-55319440 None:intergenic 30.0%
AGCAAAAACTTCAAAACCTA+AGG - chr4_4:55319424-55319443 None:intergenic 30.0%
!!! TTAGGTTTTGAAGTTTTTGC+TGG + chr4_4:55319423-55319442 Msa0688930:three_prime_UTR 30.0%
TAGAAGACAAATGGAACATA+TGG - chr4_4:55319572-55319591 None:intergenic 30.0%
TTGTATATGCTTCTTCAAGG+AGG + chr4_4:55315573-55315592 Msa0688930:five_prime_UTR 35.0%
! CCGCTATTTAACAACACTTT+TGG - chr4_4:55315636-55315655 None:intergenic 35.0%
GTTGTCAAACAGTGCTATAA+CGG + chr4_4:55315730-55315749 Msa0688930:intron 35.0%
AAGTAAACAGATGCAAATCC+TGG - chr4_4:55315831-55315850 None:intergenic 35.0%
CTGGAATACCTCATATAAAG+TGG + chr4_4:55315912-55315931 Msa0688930:five_prime_UTR 35.0%
ATACCTCATATAAAGTGGTC+TGG + chr4_4:55315917-55315936 Msa0688930:five_prime_UTR 35.0%
CTCTGTTTATCTAGGTAAAG+TGG - chr4_4:55316146-55316165 None:intergenic 35.0%
TAAACCCATCAGAAAGTTGT+CGG - chr4_4:55316213-55316232 None:intergenic 35.0%
TATGTCATGCTTAAATTCCC+TGG - chr4_4:55316305-55316324 None:intergenic 35.0%
CTATTTCCGATGTCAATTAC+AGG + chr4_4:55316392-55316411 Msa0688930:intron 35.0%
! GGTTTCCATTTCTTGTTTCT+AGG - chr4_4:55316454-55316473 None:intergenic 35.0%
!! TGGTGCTGCCAAAAAATTAA+AGG - chr4_4:55316484-55316503 None:intergenic 35.0%
!!! GATCACGATACTTTTTTGCA+AGG - chr4_4:55316605-55316624 None:intergenic 35.0%
CACATAAGCATATACCATAC+AGG + chr4_4:55316631-55316650 Msa0688930:CDS 35.0%
AGACAAGGACAATATACTCA+AGG - chr4_4:55316706-55316725 None:intergenic 35.0%
AACTGTAGAAAGATGAGACA+AGG - chr4_4:55316721-55316740 None:intergenic 35.0%
! AACTGGATATGAAGTATCTC+AGG - chr4_4:55316845-55316864 None:intergenic 35.0%
GCACAAAACTCAATGAAAAC+TGG - chr4_4:55316902-55316921 None:intergenic 35.0%
! AGAGATGATCTAGAATCACT+TGG + chr4_4:55317277-55317296 Msa0688930:CDS 35.0%
! AGTTAGAAAGTACAATGACG+AGG - chr4_4:55317370-55317389 None:intergenic 35.0%
CGTCATTGTACTTTCTAACT+TGG + chr4_4:55317370-55317389 Msa0688930:intron 35.0%
! ATTTCTTTTCCAGTCTTCCA+TGG + chr4_4:55317399-55317418 Msa0688930:intron 35.0%
GAAAATGCTTACTCCAATAG+AGG + chr4_4:55317475-55317494 Msa0688930:CDS 35.0%
!! AAGCATTGAAGTACCTCTAT+TGG - chr4_4:55317491-55317510 None:intergenic 35.0%
AATACTCTACTTCGATGCTT+TGG + chr4_4:55317522-55317541 Msa0688930:intron 35.0%
TGCATGATGCAGAAAAAAGA+TGG - chr4_4:55317627-55317646 None:intergenic 35.0%
TATCTTCAAACCGCAATGAT+CGG - chr4_4:55317830-55317849 None:intergenic 35.0%
CATATCTTAAGAGACTCTTC+CGG + chr4_4:55317861-55317880 Msa0688930:CDS 35.0%
ATATCTTAAGAGACTCTTCC+GGG + chr4_4:55317862-55317881 Msa0688930:CDS 35.0%
GATAACCTTCTCGAATGAAT+AGG - chr4_4:55317889-55317908 None:intergenic 35.0%
! AGGTGTCATATTTAAGCAAG+TGG - chr4_4:55318344-55318363 None:intergenic 35.0%
AATATGACACCTTGCAAAGT+TGG + chr4_4:55318352-55318371 Msa0688930:intron 35.0%
AAAATAGCACCAACTTTGCA+AGG - chr4_4:55318364-55318383 None:intergenic 35.0%
AGAAACACTAACCACATCTT+TGG - chr4_4:55318560-55318579 None:intergenic 35.0%
GGTGGATGTCTCAAAAAAAA+AGG - chr4_4:55319003-55319022 None:intergenic 35.0%
AGTAAAATGAACAGGTGTGA+CGG - chr4_4:55319025-55319044 None:intergenic 35.0%
!!! AATTAGCTTTTGGCCATGAA+TGG - chr4_4:55319075-55319094 None:intergenic 35.0%
CTTCCATGATTATCTAAGCT+TGG + chr4_4:55319147-55319166 Msa0688930:three_prime_UTR 35.0%
GAACCAAGCTTAGATAATCA+TGG - chr4_4:55319153-55319172 None:intergenic 35.0%
CTTGCAAAGCATATTAGACT+TGG - chr4_4:55319287-55319306 None:intergenic 35.0%
TGGAGTGTGTGTTTAACAAA+CGG - chr4_4:55319552-55319571 None:intergenic 35.0%
TTGTATATGCTTCTTCAAGG+AGG + chr4_4:55315573-55315592 Msa0688930:five_prime_UTR 35.0%
! CCGCTATTTAACAACACTTT+TGG - chr4_4:55315636-55315655 None:intergenic 35.0%
GTTGTCAAACAGTGCTATAA+CGG + chr4_4:55315730-55315749 Msa0688930:intron 35.0%
AAGTAAACAGATGCAAATCC+TGG - chr4_4:55315831-55315850 None:intergenic 35.0%
CTGGAATACCTCATATAAAG+TGG + chr4_4:55315912-55315931 Msa0688930:five_prime_UTR 35.0%
ATACCTCATATAAAGTGGTC+TGG + chr4_4:55315917-55315936 Msa0688930:five_prime_UTR 35.0%
CTCTGTTTATCTAGGTAAAG+TGG - chr4_4:55316146-55316165 None:intergenic 35.0%
TAAACCCATCAGAAAGTTGT+CGG - chr4_4:55316213-55316232 None:intergenic 35.0%
TATGTCATGCTTAAATTCCC+TGG - chr4_4:55316305-55316324 None:intergenic 35.0%
CTATTTCCGATGTCAATTAC+AGG + chr4_4:55316392-55316411 Msa0688930:intron 35.0%
! GGTTTCCATTTCTTGTTTCT+AGG - chr4_4:55316454-55316473 None:intergenic 35.0%
!! TGGTGCTGCCAAAAAATTAA+AGG - chr4_4:55316484-55316503 None:intergenic 35.0%
!!! GATCACGATACTTTTTTGCA+AGG - chr4_4:55316605-55316624 None:intergenic 35.0%
CACATAAGCATATACCATAC+AGG + chr4_4:55316631-55316650 Msa0688930:CDS 35.0%
AGACAAGGACAATATACTCA+AGG - chr4_4:55316706-55316725 None:intergenic 35.0%
AACTGTAGAAAGATGAGACA+AGG - chr4_4:55316721-55316740 None:intergenic 35.0%
! AACTGGATATGAAGTATCTC+AGG - chr4_4:55316845-55316864 None:intergenic 35.0%
GCACAAAACTCAATGAAAAC+TGG - chr4_4:55316902-55316921 None:intergenic 35.0%
! AGAGATGATCTAGAATCACT+TGG + chr4_4:55317277-55317296 Msa0688930:CDS 35.0%
! AGTTAGAAAGTACAATGACG+AGG - chr4_4:55317370-55317389 None:intergenic 35.0%
CGTCATTGTACTTTCTAACT+TGG + chr4_4:55317370-55317389 Msa0688930:intron 35.0%
! ATTTCTTTTCCAGTCTTCCA+TGG + chr4_4:55317399-55317418 Msa0688930:intron 35.0%
GAAAATGCTTACTCCAATAG+AGG + chr4_4:55317475-55317494 Msa0688930:CDS 35.0%
!! AAGCATTGAAGTACCTCTAT+TGG - chr4_4:55317491-55317510 None:intergenic 35.0%
AATACTCTACTTCGATGCTT+TGG + chr4_4:55317522-55317541 Msa0688930:intron 35.0%
TGCATGATGCAGAAAAAAGA+TGG - chr4_4:55317627-55317646 None:intergenic 35.0%
TATCTTCAAACCGCAATGAT+CGG - chr4_4:55317830-55317849 None:intergenic 35.0%
CATATCTTAAGAGACTCTTC+CGG + chr4_4:55317861-55317880 Msa0688930:CDS 35.0%
ATATCTTAAGAGACTCTTCC+GGG + chr4_4:55317862-55317881 Msa0688930:CDS 35.0%
GATAACCTTCTCGAATGAAT+AGG - chr4_4:55317889-55317908 None:intergenic 35.0%
! AGGTGTCATATTTAAGCAAG+TGG - chr4_4:55318344-55318363 None:intergenic 35.0%
AATATGACACCTTGCAAAGT+TGG + chr4_4:55318352-55318371 Msa0688930:intron 35.0%
AAAATAGCACCAACTTTGCA+AGG - chr4_4:55318364-55318383 None:intergenic 35.0%
AGAAACACTAACCACATCTT+TGG - chr4_4:55318560-55318579 None:intergenic 35.0%
GGTGGATGTCTCAAAAAAAA+AGG - chr4_4:55319003-55319022 None:intergenic 35.0%
AGTAAAATGAACAGGTGTGA+CGG - chr4_4:55319025-55319044 None:intergenic 35.0%
!!! AATTAGCTTTTGGCCATGAA+TGG - chr4_4:55319075-55319094 None:intergenic 35.0%
CTTCCATGATTATCTAAGCT+TGG + chr4_4:55319147-55319166 Msa0688930:three_prime_UTR 35.0%
GAACCAAGCTTAGATAATCA+TGG - chr4_4:55319153-55319172 None:intergenic 35.0%
CTTGCAAAGCATATTAGACT+TGG - chr4_4:55319287-55319306 None:intergenic 35.0%
TGGAGTGTGTGTTTAACAAA+CGG - chr4_4:55319552-55319571 None:intergenic 35.0%
ATAGCAGCGCTATAGTTTAG+TGG + chr4_4:55315658-55315677 Msa0688930:intron 40.0%
ACTCCAGACCACTTTATATG+AGG - chr4_4:55315923-55315942 None:intergenic 40.0%
GAGTAGAGTATATGCACTCT+CGG + chr4_4:55316163-55316182 Msa0688930:intron 40.0%
AGTAGAGTATATGCACTCTC+GGG + chr4_4:55316164-55316183 Msa0688930:CDS 40.0%
AAACCCATCAGAAAGTTGTC+GGG - chr4_4:55316212-55316231 None:intergenic 40.0%
!! GACAACTTTCTGATGGGTTT+AGG + chr4_4:55316212-55316231 Msa0688930:CDS 40.0%
! TAGATACCTGATTTGCCTTG+CGG - chr4_4:55316238-55316257 None:intergenic 40.0%
AAGCATGACATACCTCTAAC+TGG + chr4_4:55316313-55316332 Msa0688930:intron 40.0%
TTCCACTCCTGTTACATGAA+CGG + chr4_4:55317033-55317052 Msa0688930:intron 40.0%
AGGGAAAACAAGAATCTCAC+CGG + chr4_4:55317077-55317096 Msa0688930:intron 40.0%
!! GTACTTTTTGAGAGGAAGGT+TGG + chr4_4:55317312-55317331 Msa0688930:intron 40.0%
!! TTTTTGAGAGGAAGGTTGGT+TGG + chr4_4:55317316-55317335 Msa0688930:intron 40.0%
CTAGAACTGGATCCAATTTG+TGG - chr4_4:55318042-55318061 None:intergenic 40.0%
!! TTGGATCCAGTTCTAGAACA+AGG + chr4_4:55318046-55318065 Msa0688930:CDS 40.0%
!! TGGATCCAGTTCTAGAACAA+GGG + chr4_4:55318047-55318066 Msa0688930:CDS 40.0%
!! TTTAAGGCTGGTTTCACACT+TGG - chr4_4:55318158-55318177 None:intergenic 40.0%
AGATAGATTATCTGGTGCAG+TGG + chr4_4:55318465-55318484 Msa0688930:CDS 40.0%
GATAGATTATCTGGTGCAGT+GGG + chr4_4:55318466-55318485 Msa0688930:CDS 40.0%
ATAGATTATCTGGTGCAGTG+GGG + chr4_4:55318467-55318486 Msa0688930:CDS 40.0%
! CTAACCACATCTTTGGAAGA+CGG - chr4_4:55318553-55318572 None:intergenic 40.0%
! AAATTCTTGCTGTCCAACAC+TGG + chr4_4:55318659-55318678 Msa0688930:intron 40.0%
TTGCTACAAAGATCCAGTGT+TGG - chr4_4:55318675-55318694 None:intergenic 40.0%
TGTAGCAACCTGATTCTGAT+AGG + chr4_4:55318687-55318706 Msa0688930:intron 40.0%
GTAGCAACCTGATTCTGATA+GGG + chr4_4:55318688-55318707 Msa0688930:intron 40.0%
! GATGATTTGGATTCAAGACC+TGG - chr4_4:55318860-55318879 None:intergenic 40.0%
! TTTTCCCTGTACCAATTGAC+AGG - chr4_4:55318943-55318962 None:intergenic 40.0%
GAAAATGAGCGAAAACTCGA+TGG + chr4_4:55318963-55318982 Msa0688930:exon 40.0%
GTAAAATGAACAGGTGTGAC+GGG - chr4_4:55319024-55319043 None:intergenic 40.0%
!! GCATCTGAAGAAGCATTTGA+GGG - chr4_4:55319126-55319145 None:intergenic 40.0%
!! AGCATCTGAAGAAGCATTTG+AGG - chr4_4:55319127-55319146 None:intergenic 40.0%
TATCACCCTTCCATTGCATT+TGG + chr4_4:55319310-55319329 Msa0688930:three_prime_UTR 40.0%
ATCACCCTTCCATTGCATTT+GGG + chr4_4:55319311-55319330 Msa0688930:three_prime_UTR 40.0%
GGTGGCTCCTAATTTAGATT+GGG + chr4_4:55319349-55319368 Msa0688930:three_prime_UTR 40.0%
GTGGCTCCTAATTTAGATTG+GGG + chr4_4:55319350-55319369 Msa0688930:three_prime_UTR 40.0%
ATAGCAGCGCTATAGTTTAG+TGG + chr4_4:55315658-55315677 Msa0688930:intron 40.0%
ACTCCAGACCACTTTATATG+AGG - chr4_4:55315923-55315942 None:intergenic 40.0%
GAGTAGAGTATATGCACTCT+CGG + chr4_4:55316163-55316182 Msa0688930:intron 40.0%
AGTAGAGTATATGCACTCTC+GGG + chr4_4:55316164-55316183 Msa0688930:CDS 40.0%
AAACCCATCAGAAAGTTGTC+GGG - chr4_4:55316212-55316231 None:intergenic 40.0%
!! GACAACTTTCTGATGGGTTT+AGG + chr4_4:55316212-55316231 Msa0688930:CDS 40.0%
! TAGATACCTGATTTGCCTTG+CGG - chr4_4:55316238-55316257 None:intergenic 40.0%
AAGCATGACATACCTCTAAC+TGG + chr4_4:55316313-55316332 Msa0688930:intron 40.0%
TTCCACTCCTGTTACATGAA+CGG + chr4_4:55317033-55317052 Msa0688930:intron 40.0%
AGGGAAAACAAGAATCTCAC+CGG + chr4_4:55317077-55317096 Msa0688930:intron 40.0%
!! GTACTTTTTGAGAGGAAGGT+TGG + chr4_4:55317312-55317331 Msa0688930:intron 40.0%
!! TTTTTGAGAGGAAGGTTGGT+TGG + chr4_4:55317316-55317335 Msa0688930:intron 40.0%
CTAGAACTGGATCCAATTTG+TGG - chr4_4:55318042-55318061 None:intergenic 40.0%
!! TTGGATCCAGTTCTAGAACA+AGG + chr4_4:55318046-55318065 Msa0688930:CDS 40.0%
!! TGGATCCAGTTCTAGAACAA+GGG + chr4_4:55318047-55318066 Msa0688930:CDS 40.0%
!! TTTAAGGCTGGTTTCACACT+TGG - chr4_4:55318158-55318177 None:intergenic 40.0%
AGATAGATTATCTGGTGCAG+TGG + chr4_4:55318465-55318484 Msa0688930:CDS 40.0%
GATAGATTATCTGGTGCAGT+GGG + chr4_4:55318466-55318485 Msa0688930:CDS 40.0%
ATAGATTATCTGGTGCAGTG+GGG + chr4_4:55318467-55318486 Msa0688930:CDS 40.0%
! CTAACCACATCTTTGGAAGA+CGG - chr4_4:55318553-55318572 None:intergenic 40.0%
! AAATTCTTGCTGTCCAACAC+TGG + chr4_4:55318659-55318678 Msa0688930:intron 40.0%
TTGCTACAAAGATCCAGTGT+TGG - chr4_4:55318675-55318694 None:intergenic 40.0%
TGTAGCAACCTGATTCTGAT+AGG + chr4_4:55318687-55318706 Msa0688930:intron 40.0%
GTAGCAACCTGATTCTGATA+GGG + chr4_4:55318688-55318707 Msa0688930:intron 40.0%
! GATGATTTGGATTCAAGACC+TGG - chr4_4:55318860-55318879 None:intergenic 40.0%
! TTTTCCCTGTACCAATTGAC+AGG - chr4_4:55318943-55318962 None:intergenic 40.0%
GAAAATGAGCGAAAACTCGA+TGG + chr4_4:55318963-55318982 Msa0688930:exon 40.0%
GTAAAATGAACAGGTGTGAC+GGG - chr4_4:55319024-55319043 None:intergenic 40.0%
!! GCATCTGAAGAAGCATTTGA+GGG - chr4_4:55319126-55319145 None:intergenic 40.0%
!! AGCATCTGAAGAAGCATTTG+AGG - chr4_4:55319127-55319146 None:intergenic 40.0%
TATCACCCTTCCATTGCATT+TGG + chr4_4:55319310-55319329 Msa0688930:three_prime_UTR 40.0%
ATCACCCTTCCATTGCATTT+GGG + chr4_4:55319311-55319330 Msa0688930:three_prime_UTR 40.0%
GGTGGCTCCTAATTTAGATT+GGG + chr4_4:55319349-55319368 Msa0688930:three_prime_UTR 40.0%
GTGGCTCCTAATTTAGATTG+GGG + chr4_4:55319350-55319369 Msa0688930:three_prime_UTR 40.0%
TGAGGATGCTTTGTCTTCAC+AGG - chr4_4:55315534-55315553 None:intergenic 45.0%
TTGGACTCGTAGAGAAGTTG+AGG - chr4_4:55315552-55315571 None:intergenic 45.0%
GCTATAGCACTATTGCGTAG+CGG + chr4_4:55315754-55315773 Msa0688930:intron 45.0%
! TATAAAGTGGTCTGGAGTCG+AGG + chr4_4:55315925-55315944 Msa0688930:five_prime_UTR 45.0%
! ATAAAGTGGTCTGGAGTCGA+GGG + chr4_4:55315926-55315945 Msa0688930:five_prime_UTR 45.0%
ACTTGGTCCAAGAAGGTCAA+TGG - chr4_4:55315969-55315988 None:intergenic 45.0%
GTAGAGTATATGCACTCTCG+GGG + chr4_4:55316165-55316184 Msa0688930:CDS 45.0%
AAAGCCCGACAACTTTCTGA+TGG + chr4_4:55316205-55316224 Msa0688930:CDS 45.0%
AAGCCCGACAACTTTCTGAT+GGG + chr4_4:55316206-55316225 Msa0688930:CDS 45.0%
TATTTGTGCGCATATCTGCC+AGG + chr4_4:55316284-55316303 Msa0688930:intron 45.0%
ATTTGTGCGCATATCTGCCA+GGG + chr4_4:55316285-55316304 Msa0688930:intron 45.0%
ACTTGAGGAATGCCAGTTAG+AGG - chr4_4:55316328-55316347 None:intergenic 45.0%
AACCGTTCATGTAACAGGAG+TGG - chr4_4:55317038-55317057 None:intergenic 45.0%
AGTGCAACCGTTCATGTAAC+AGG - chr4_4:55317043-55317062 None:intergenic 45.0%
ACTTGCATATCGAGCAGTTC+CGG - chr4_4:55317099-55317118 None:intergenic 45.0%
GCAAGTGTTAACACTCACCT+TGG + chr4_4:55317113-55317132 Msa0688930:CDS 45.0%
GTTAACACTCACCTTGGAGT+TGG + chr4_4:55317119-55317138 Msa0688930:CDS 45.0%
! TTTTCCAGTCTTCCATGGCA+AGG + chr4_4:55317404-55317423 Msa0688930:intron 45.0%
TCCACTATTGCCGATCATTG+CGG + chr4_4:55317817-55317836 Msa0688930:CDS 45.0%
CTTCTCGAATGAATAGGTCC+CGG - chr4_4:55317883-55317902 None:intergenic 45.0%
!! ACTCACCCTTGTTCTAGAAC+TGG - chr4_4:55318055-55318074 None:intergenic 45.0%
CATCTGGAGAGCGATTAGAA+CGG + chr4_4:55318186-55318205 Msa0688930:CDS 45.0%
TAGATTATCTGGTGCAGTGG+GGG + chr4_4:55318468-55318487 Msa0688930:CDS 45.0%
!! GGGGCATTTTCAAGAAGGAA+TGG + chr4_4:55318487-55318506 Msa0688930:CDS 45.0%
TATGCCGTCTTCCAAAGATG+TGG + chr4_4:55318546-55318565 Msa0688930:CDS 45.0%
! GGTCTGCTGCTTGATATCAT+TGG - chr4_4:55318752-55318771 None:intergenic 45.0%
TCGAGATCAATCGACTAGAC+CGG - chr4_4:55318802-55318821 None:intergenic 45.0%
! TCGTCTATCGACTACTCAGA+GGG + chr4_4:55318829-55318848 Msa0688930:CDS 45.0%
GGTACGGGTAAAGGATGATT+TGG - chr4_4:55318873-55318892 None:intergenic 45.0%
!! AGCTTTGAGCTCCTGTCAAT+TGG + chr4_4:55318929-55318948 Msa0688930:CDS 45.0%
AGCTCCTGTCAATTGGTACA+GGG + chr4_4:55318936-55318955 Msa0688930:CDS 45.0%
! ATTTGGGACCCCTCTAATAG+TGG + chr4_4:55319327-55319346 Msa0688930:three_prime_UTR 45.0%
! TTTGGGACCCCTCTAATAGT+GGG + chr4_4:55319328-55319347 Msa0688930:three_prime_UTR 45.0%
GGGTGGCTCCTAATTTAGAT+TGG + chr4_4:55319348-55319367 Msa0688930:three_prime_UTR 45.0%
! AGAATGTTTGGAGCCTCCTT+AGG + chr4_4:55319405-55319424 Msa0688930:three_prime_UTR 45.0%
TGAGGATGCTTTGTCTTCAC+AGG - chr4_4:55315534-55315553 None:intergenic 45.0%
TTGGACTCGTAGAGAAGTTG+AGG - chr4_4:55315552-55315571 None:intergenic 45.0%
GCTATAGCACTATTGCGTAG+CGG + chr4_4:55315754-55315773 Msa0688930:intron 45.0%
! TATAAAGTGGTCTGGAGTCG+AGG + chr4_4:55315925-55315944 Msa0688930:five_prime_UTR 45.0%
! ATAAAGTGGTCTGGAGTCGA+GGG + chr4_4:55315926-55315945 Msa0688930:five_prime_UTR 45.0%
ACTTGGTCCAAGAAGGTCAA+TGG - chr4_4:55315969-55315988 None:intergenic 45.0%
GTAGAGTATATGCACTCTCG+GGG + chr4_4:55316165-55316184 Msa0688930:CDS 45.0%
AAAGCCCGACAACTTTCTGA+TGG + chr4_4:55316205-55316224 Msa0688930:CDS 45.0%
AAGCCCGACAACTTTCTGAT+GGG + chr4_4:55316206-55316225 Msa0688930:CDS 45.0%
TATTTGTGCGCATATCTGCC+AGG + chr4_4:55316284-55316303 Msa0688930:intron 45.0%
ATTTGTGCGCATATCTGCCA+GGG + chr4_4:55316285-55316304 Msa0688930:intron 45.0%
ACTTGAGGAATGCCAGTTAG+AGG - chr4_4:55316328-55316347 None:intergenic 45.0%
AACCGTTCATGTAACAGGAG+TGG - chr4_4:55317038-55317057 None:intergenic 45.0%
AGTGCAACCGTTCATGTAAC+AGG - chr4_4:55317043-55317062 None:intergenic 45.0%
ACTTGCATATCGAGCAGTTC+CGG - chr4_4:55317099-55317118 None:intergenic 45.0%
GCAAGTGTTAACACTCACCT+TGG + chr4_4:55317113-55317132 Msa0688930:CDS 45.0%
GTTAACACTCACCTTGGAGT+TGG + chr4_4:55317119-55317138 Msa0688930:CDS 45.0%
! TTTTCCAGTCTTCCATGGCA+AGG + chr4_4:55317404-55317423 Msa0688930:intron 45.0%
TCCACTATTGCCGATCATTG+CGG + chr4_4:55317817-55317836 Msa0688930:CDS 45.0%
CTTCTCGAATGAATAGGTCC+CGG - chr4_4:55317883-55317902 None:intergenic 45.0%
!! ACTCACCCTTGTTCTAGAAC+TGG - chr4_4:55318055-55318074 None:intergenic 45.0%
CATCTGGAGAGCGATTAGAA+CGG + chr4_4:55318186-55318205 Msa0688930:CDS 45.0%
TAGATTATCTGGTGCAGTGG+GGG + chr4_4:55318468-55318487 Msa0688930:CDS 45.0%
!! GGGGCATTTTCAAGAAGGAA+TGG + chr4_4:55318487-55318506 Msa0688930:CDS 45.0%
TATGCCGTCTTCCAAAGATG+TGG + chr4_4:55318546-55318565 Msa0688930:CDS 45.0%
! GGTCTGCTGCTTGATATCAT+TGG - chr4_4:55318752-55318771 None:intergenic 45.0%
TCGAGATCAATCGACTAGAC+CGG - chr4_4:55318802-55318821 None:intergenic 45.0%
! TCGTCTATCGACTACTCAGA+GGG + chr4_4:55318829-55318848 Msa0688930:CDS 45.0%
GGTACGGGTAAAGGATGATT+TGG - chr4_4:55318873-55318892 None:intergenic 45.0%
!! AGCTTTGAGCTCCTGTCAAT+TGG + chr4_4:55318929-55318948 Msa0688930:CDS 45.0%
AGCTCCTGTCAATTGGTACA+GGG + chr4_4:55318936-55318955 Msa0688930:CDS 45.0%
! ATTTGGGACCCCTCTAATAG+TGG + chr4_4:55319327-55319346 Msa0688930:three_prime_UTR 45.0%
! TTTGGGACCCCTCTAATAGT+GGG + chr4_4:55319328-55319347 Msa0688930:three_prime_UTR 45.0%
GGGTGGCTCCTAATTTAGAT+TGG + chr4_4:55319348-55319367 Msa0688930:three_prime_UTR 45.0%
! AGAATGTTTGGAGCCTCCTT+AGG + chr4_4:55319405-55319424 Msa0688930:three_prime_UTR 45.0%
TGGTACGCGATTTACAGCAC+TGG + chr4_4:55315802-55315821 Msa0688930:intron 50.0%
CGAGGGTGAGTACAATGTCA+TGG + chr4_4:55315943-55315962 Msa0688930:five_prime_UTR 50.0%
GTCATGGCCATTGACCTTCT+TGG + chr4_4:55315959-55315978 Msa0688930:five_prime_UTR 50.0%
! CTTCGAGACTTGGTCCAAGA+AGG - chr4_4:55315976-55315995 None:intergenic 50.0%
TTTAGGCCGCAAGGCAAATC+AGG + chr4_4:55316229-55316248 Msa0688930:CDS 50.0%
ACCGCAATGATCGGCAATAG+TGG - chr4_4:55317821-55317840 None:intergenic 50.0%
CGGGACCTATTCATTCGAGA+AGG + chr4_4:55317881-55317900 Msa0688930:CDS 50.0%
GTGAAACCAGCCTTAAACCC+AGG + chr4_4:55318161-55318180 Msa0688930:CDS 50.0%
TCCAGATGGTCCTGGGTTTA+AGG - chr4_4:55318174-55318193 None:intergenic 50.0%
CGTTCTAATCGCTCTCCAGA+TGG - chr4_4:55318188-55318207 None:intergenic 50.0%
!!! CAGTGGGGGCATTTTCAAGA+AGG + chr4_4:55318482-55318501 Msa0688930:CDS 50.0%
GCAATGGCAGTGCTTCGAAA+AGG + chr4_4:55318726-55318745 Msa0688930:CDS 50.0%
! GTCGTCTATCGACTACTCAG+AGG + chr4_4:55318828-55318847 Msa0688930:CDS 50.0%
ACTACTCAGAGGGTTCAACC+AGG + chr4_4:55318839-55318858 Msa0688930:CDS 50.0%
GAGCTCCTGTCAATTGGTAC+AGG + chr4_4:55318935-55318954 Msa0688930:CDS 50.0%
! AAATGAACAGGTGTGACGGG+TGG - chr4_4:55319021-55319040 None:intergenic 50.0%
CCATGAATGGACCACAACAC+AGG - chr4_4:55319062-55319081 None:intergenic 50.0%
CCTGTGTTGTGGTCCATTCA+TGG + chr4_4:55319059-55319078 Msa0688930:three_prime_UTR 50.0%
GGGTCCCAAATGCAATGGAA+GGG - chr4_4:55319318-55319337 None:intergenic 50.0%
TAGAGGGGTCCCAAATGCAA+TGG - chr4_4:55319323-55319342 None:intergenic 50.0%
AGGAGCCACCCACTATTAGA+GGG - chr4_4:55319339-55319358 None:intergenic 50.0%
TAGGAGCCACCCACTATTAG+AGG - chr4_4:55319340-55319359 None:intergenic 50.0%
TGGTACGCGATTTACAGCAC+TGG + chr4_4:55315802-55315821 Msa0688930:intron 50.0%
CGAGGGTGAGTACAATGTCA+TGG + chr4_4:55315943-55315962 Msa0688930:five_prime_UTR 50.0%
GTCATGGCCATTGACCTTCT+TGG + chr4_4:55315959-55315978 Msa0688930:five_prime_UTR 50.0%
! CTTCGAGACTTGGTCCAAGA+AGG - chr4_4:55315976-55315995 None:intergenic 50.0%
TTTAGGCCGCAAGGCAAATC+AGG + chr4_4:55316229-55316248 Msa0688930:CDS 50.0%
ACCGCAATGATCGGCAATAG+TGG - chr4_4:55317821-55317840 None:intergenic 50.0%
CGGGACCTATTCATTCGAGA+AGG + chr4_4:55317881-55317900 Msa0688930:CDS 50.0%
GTGAAACCAGCCTTAAACCC+AGG + chr4_4:55318161-55318180 Msa0688930:CDS 50.0%
TCCAGATGGTCCTGGGTTTA+AGG - chr4_4:55318174-55318193 None:intergenic 50.0%
CGTTCTAATCGCTCTCCAGA+TGG - chr4_4:55318188-55318207 None:intergenic 50.0%
!!! CAGTGGGGGCATTTTCAAGA+AGG + chr4_4:55318482-55318501 Msa0688930:CDS 50.0%
GCAATGGCAGTGCTTCGAAA+AGG + chr4_4:55318726-55318745 Msa0688930:CDS 50.0%
! GTCGTCTATCGACTACTCAG+AGG + chr4_4:55318828-55318847 Msa0688930:CDS 50.0%
ACTACTCAGAGGGTTCAACC+AGG + chr4_4:55318839-55318858 Msa0688930:CDS 50.0%
GAGCTCCTGTCAATTGGTAC+AGG + chr4_4:55318935-55318954 Msa0688930:CDS 50.0%
! AAATGAACAGGTGTGACGGG+TGG - chr4_4:55319021-55319040 None:intergenic 50.0%
CCATGAATGGACCACAACAC+AGG - chr4_4:55319062-55319081 None:intergenic 50.0%
CCTGTGTTGTGGTCCATTCA+TGG + chr4_4:55319059-55319078 Msa0688930:three_prime_UTR 50.0%
GGGTCCCAAATGCAATGGAA+GGG - chr4_4:55319318-55319337 None:intergenic 50.0%
TAGAGGGGTCCCAAATGCAA+TGG - chr4_4:55319323-55319342 None:intergenic 50.0%
AGGAGCCACCCACTATTAGA+GGG - chr4_4:55319339-55319358 None:intergenic 50.0%
TAGGAGCCACCCACTATTAG+AGG - chr4_4:55319340-55319359 None:intergenic 50.0%
!! GATTTACAGCACTGGCAGCC+AGG + chr4_4:55315810-55315829 Msa0688930:intron 55.0%
!! TCTGATGGGTTTAGGCCGCA+AGG + chr4_4:55316220-55316239 Msa0688930:CDS 55.0%
!! CACCTTGGAGTTGGTGAGTG+AGG + chr4_4:55317128-55317147 Msa0688930:intron 55.0%
TGCCTCACTCACCAACTCCA+AGG - chr4_4:55317133-55317152 None:intergenic 55.0%
CATGCCTTGCCATGGAAGAC+TGG - chr4_4:55317411-55317430 None:intergenic 55.0%
CCAGCTTTCATGCCTTGCCA+TGG - chr4_4:55317419-55317438 None:intergenic 55.0%
CCATGGCAAGGCATGAAAGC+TGG + chr4_4:55317416-55317435 Msa0688930:CDS 55.0%
! GATGGTCCTGGGTTTAAGGC+TGG - chr4_4:55318170-55318189 None:intergenic 55.0%
GCCTTAAACCCAGGACCATC+TGG + chr4_4:55318170-55318189 Msa0688930:CDS 55.0%
ATCGCTCTCCAGATGGTCCT+GGG - chr4_4:55318181-55318200 None:intergenic 55.0%
AATCGCTCTCCAGATGGTCC+TGG - chr4_4:55318182-55318201 None:intergenic 55.0%
GAGCGATTAGAACGGCCTTC+AGG + chr4_4:55318194-55318213 Msa0688930:CDS 55.0%
! AGAAGGAATGGCTCTGCGCA+AGG + chr4_4:55318499-55318518 Msa0688930:CDS 55.0%
CTGCGAGCCCTATCAGAATC+AGG - chr4_4:55318698-55318717 None:intergenic 55.0%
GCTCGCAGTTCTACTCGCAA+TGG + chr4_4:55318710-55318729 Msa0688930:CDS 55.0%
AGCAGCAGACCAAGCTCTTC+TGG + chr4_4:55318761-55318780 Msa0688930:CDS 55.0%
GCAGCAGACCAAGCTCTTCT+GGG + chr4_4:55318762-55318781 Msa0688930:CDS 55.0%
CAGCAGACCAAGCTCTTCTG+GGG + chr4_4:55318763-55318782 Msa0688930:CDS 55.0%
CTAGGTTCCCCAGAAGAGCT+TGG - chr4_4:55318773-55318792 None:intergenic 55.0%
CTGGGGAACCTAGTGAAAGC+CGG + chr4_4:55318780-55318799 Msa0688930:CDS 55.0%
! CGACTAGACCGGCTTTCACT+AGG - chr4_4:55318791-55318810 None:intergenic 55.0%
TCATCCTTTACCCGTACCGC+AGG + chr4_4:55318875-55318894 Msa0688930:CDS 55.0%
CATCCTTTACCCGTACCGCA+GGG + chr4_4:55318876-55318895 Msa0688930:CDS 55.0%
GGGGTCCCAAATGCAATGGA+AGG - chr4_4:55319319-55319338 None:intergenic 55.0%
GGAGCCACCCACTATTAGAG+GGG - chr4_4:55319338-55319357 None:intergenic 55.0%
!! GATTTACAGCACTGGCAGCC+AGG + chr4_4:55315810-55315829 Msa0688930:intron 55.0%
!! TCTGATGGGTTTAGGCCGCA+AGG + chr4_4:55316220-55316239 Msa0688930:CDS 55.0%
!! CACCTTGGAGTTGGTGAGTG+AGG + chr4_4:55317128-55317147 Msa0688930:intron 55.0%
TGCCTCACTCACCAACTCCA+AGG - chr4_4:55317133-55317152 None:intergenic 55.0%
CATGCCTTGCCATGGAAGAC+TGG - chr4_4:55317411-55317430 None:intergenic 55.0%
CCAGCTTTCATGCCTTGCCA+TGG - chr4_4:55317419-55317438 None:intergenic 55.0%
CCATGGCAAGGCATGAAAGC+TGG + chr4_4:55317416-55317435 Msa0688930:CDS 55.0%
! GATGGTCCTGGGTTTAAGGC+TGG - chr4_4:55318170-55318189 None:intergenic 55.0%
GCCTTAAACCCAGGACCATC+TGG + chr4_4:55318170-55318189 Msa0688930:CDS 55.0%
ATCGCTCTCCAGATGGTCCT+GGG - chr4_4:55318181-55318200 None:intergenic 55.0%
AATCGCTCTCCAGATGGTCC+TGG - chr4_4:55318182-55318201 None:intergenic 55.0%
GAGCGATTAGAACGGCCTTC+AGG + chr4_4:55318194-55318213 Msa0688930:CDS 55.0%
! AGAAGGAATGGCTCTGCGCA+AGG + chr4_4:55318499-55318518 Msa0688930:CDS 55.0%
CTGCGAGCCCTATCAGAATC+AGG - chr4_4:55318698-55318717 None:intergenic 55.0%
GCTCGCAGTTCTACTCGCAA+TGG + chr4_4:55318710-55318729 Msa0688930:CDS 55.0%
AGCAGCAGACCAAGCTCTTC+TGG + chr4_4:55318761-55318780 Msa0688930:CDS 55.0%
GCAGCAGACCAAGCTCTTCT+GGG + chr4_4:55318762-55318781 Msa0688930:CDS 55.0%
CAGCAGACCAAGCTCTTCTG+GGG + chr4_4:55318763-55318782 Msa0688930:CDS 55.0%
CTAGGTTCCCCAGAAGAGCT+TGG - chr4_4:55318773-55318792 None:intergenic 55.0%
CTGGGGAACCTAGTGAAAGC+CGG + chr4_4:55318780-55318799 Msa0688930:CDS 55.0%
! CGACTAGACCGGCTTTCACT+AGG - chr4_4:55318791-55318810 None:intergenic 55.0%
TCATCCTTTACCCGTACCGC+AGG + chr4_4:55318875-55318894 Msa0688930:CDS 55.0%
CATCCTTTACCCGTACCGCA+GGG + chr4_4:55318876-55318895 Msa0688930:CDS 55.0%
GGGGTCCCAAATGCAATGGA+AGG - chr4_4:55319319-55319338 None:intergenic 55.0%
GGAGCCACCCACTATTAGAG+GGG - chr4_4:55319338-55319357 None:intergenic 55.0%
CTGCGCAAGGACTGCAGCAT+AGG + chr4_4:55318512-55318531 Msa0688930:CDS 60.0%
TGTCCCTGCGGTACGGGTAA+AGG - chr4_4:55318882-55318901 None:intergenic 60.0%
! GGGACCCCTCTAATAGTGGG+TGG + chr4_4:55319331-55319350 Msa0688930:three_prime_UTR 60.0%
CTGCGCAAGGACTGCAGCAT+AGG + chr4_4:55318512-55318531 Msa0688930:CDS 60.0%
TGTCCCTGCGGTACGGGTAA+AGG - chr4_4:55318882-55318901 None:intergenic 60.0%
! GGGACCCCTCTAATAGTGGG+TGG + chr4_4:55319331-55319350 Msa0688930:three_prime_UTR 60.0%
ACCTCGTGTCCCTGCGGTAC+GGG - chr4_4:55318888-55318907 None:intergenic 65.0%
CACCTCGTGTCCCTGCGGTA+CGG - chr4_4:55318889-55318908 None:intergenic 65.0%
ACCTCGTGTCCCTGCGGTAC+GGG - chr4_4:55318888-55318907 None:intergenic 65.0%
CACCTCGTGTCCCTGCGGTA+CGG - chr4_4:55318889-55318908 None:intergenic 65.0%
ACCCGTACCGCAGGGACACG+AGG + chr4_4:55318884-55318903 Msa0688930:CDS 70.0%
CGTACCGCAGGGACACGAGG+TGG + chr4_4:55318887-55318906 Msa0688930:CDS 70.0%
GCGACCACCTCGTGTCCCTG+CGG - chr4_4:55318894-55318913 None:intergenic 70.0%
ACCCGTACCGCAGGGACACG+AGG + chr4_4:55318884-55318903 Msa0688930:CDS 70.0%
CGTACCGCAGGGACACGAGG+TGG + chr4_4:55318887-55318906 Msa0688930:CDS 70.0%
GCGACCACCTCGTGTCCCTG+CGG - chr4_4:55318894-55318913 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 55315515 55319593 55315515 ID=Msa0688930;Name=Msa0688930
chr4_4 mRNA 55315515 55319593 55315515 ID=Msa0688930-mRNA-1;Parent=Msa0688930;Name=Msa0688930-mRNA-1;_AED=0.16;_eAED=0.16;_QI=213|0.81|0.83|1|1|0.91|12|623|345
chr4_4 exon 55315515 55315597 55315515 ID=Msa0688930-mRNA-1:exon:14593;Parent=Msa0688930-mRNA-1
chr4_4 exon 55315912 55316059 55315912 ID=Msa0688930-mRNA-1:exon:14594;Parent=Msa0688930-mRNA-1
chr4_4 exon 55316164 55316250 55316164 ID=Msa0688930-mRNA-1:exon:14595;Parent=Msa0688930-mRNA-1
chr4_4 exon 55316582 55316652 55316582 ID=Msa0688930-mRNA-1:exon:14596;Parent=Msa0688930-mRNA-1
chr4_4 exon 55317079 55317140 55317079 ID=Msa0688930-mRNA-1:exon:14597;Parent=Msa0688930-mRNA-1
chr4_4 exon 55317266 55317329 55317266 ID=Msa0688930-mRNA-1:exon:14598;Parent=Msa0688930-mRNA-1
chr4_4 exon 55317412 55317496 55317412 ID=Msa0688930-mRNA-1:exon:14599;Parent=Msa0688930-mRNA-1
chr4_4 exon 55317777 55317902 55317777 ID=Msa0688930-mRNA-1:exon:14600;Parent=Msa0688930-mRNA-1
chr4_4 exon 55318003 55318068 55318003 ID=Msa0688930-mRNA-1:exon:14601;Parent=Msa0688930-mRNA-1
chr4_4 exon 55318155 55318215 55318155 ID=Msa0688930-mRNA-1:exon:14602;Parent=Msa0688930-mRNA-1
chr4_4 exon 55318449 55318567 55318449 ID=Msa0688930-mRNA-1:exon:14603;Parent=Msa0688930-mRNA-1
chr4_4 exon 55318692 55319593 55318692 ID=Msa0688930-mRNA-1:exon:14604;Parent=Msa0688930-mRNA-1
chr4_4 five_prime_UTR 55315515 55315597 55315515 ID=Msa0688930-mRNA-1:five_prime_utr;Parent=Msa0688930-mRNA-1
chr4_4 five_prime_UTR 55315912 55316041 55315912 ID=Msa0688930-mRNA-1:five_prime_utr;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55316042 55316059 55316042 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55316164 55316250 55316164 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55316582 55316652 55316582 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55317079 55317140 55317079 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55317266 55317329 55317266 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55317412 55317496 55317412 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55317777 55317902 55317777 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55318003 55318068 55318003 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55318155 55318215 55318155 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55318449 55318567 55318449 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 CDS 55318692 55318970 55318692 ID=Msa0688930-mRNA-1:cds;Parent=Msa0688930-mRNA-1
chr4_4 three_prime_UTR 55318971 55319593 55318971 ID=Msa0688930-mRNA-1:three_prime_utr;Parent=Msa0688930-mRNA-1
Gene Sequence

>Msa0688930

ATGCTTGCTGATCAACTAAGTAGAGTATATGCACTCTCGGGGTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACCGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCATGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAAATGCTTACTCCAATAGAGGTATTGTGCAAGTCTCATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAACCCGATTATTCATATCTTAAGAGACTCTTCCGGGACCTATTCATTCGAGAAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACAAGGCCAAGTGTGAAACCAGCCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCTGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGATGTGCAACCTGATTCTGATAGGGCTCGCAGTTCTACTCGCAATGGCAGTGCTTCGAAAAGGCCAATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCGAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCCAAATCATCCTTTACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGAAAATGA
Protein sequence

>Msa0688930

MLADQLSRVYALSGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDNPIIHILRDSSGTYSFEKFDYVFDWTILKYPQIGSSSRTRPSVKPALNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSAQGLQHRSLDNMPSSKDVQPDSDRARSSTRNGSASKRPMISSSRPSSSGEPSESRSSRLISSSSRLSTTQRVQPGLESKSSFTRTAGTRGGRDDTLKSFELLSIGTGKRK*