AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033300 MtrunA17_Chr1g0166811 99.793 483 1 0 6 488 1 483 0.0 996
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033300 AT5G08530.1 92.516 481 36 0 6 486 4 484 0.0 878

Find 187 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTAAAGATTTGGTAATTA+AGG 0.130772 1_1:+60772272 Msa0033300:CDS
TTGGCATAAATGACCATTTA+AGG 0.141665 1_1:-60772368 None:intergenic
CACGTTTCATGGCACCTTTC+AGG 0.162566 1_1:-60772236 None:intergenic
TAAAGCAGTGCCATTCATTT+TGG 0.175033 1_1:+60775969 Msa0033300:three_prime_UTR
CCAGAATGGTTTGCCAGTTT+TGG 0.255333 1_1:+60772855 Msa0033300:CDS
CATGATTTCCCTGTCTTTGC+AGG 0.258984 1_1:-60772451 None:intergenic
CATCCTTAAGTCCACCAAAA+TGG 0.259173 1_1:-60772170 None:intergenic
GTTTACCTTGTTTCCCTTCA+AGG 0.260435 1_1:-60772725 None:intergenic
GGCTTATGCAGCTGGGCTTT+TGG 0.264004 1_1:+60772605 Msa0033300:CDS
TTCTGGCCCACGCCTTAAAA+TGG 0.269999 1_1:-60772838 None:intergenic
GATGGATTATGATGCGTTAA+AGG 0.283095 1_1:+60773088 Msa0033300:CDS
AAGGCTGTCGGGTCAGGGTT+GGG 0.290714 1_1:+60773107 Msa0033300:CDS
ACATCGTCACATACATGTTT+TGG 0.297955 1_1:-60773062 None:intergenic
GCGTTAAAGGCTGTCGGGTC+AGG 0.299368 1_1:+60773101 Msa0033300:CDS
CCAAAACTGGCAAACCATTC+TGG 0.302248 1_1:-60772855 None:intergenic
GGATAGCAATGGCTTTGATT+TGG 0.303733 1_1:+60776237 Msa0033300:three_prime_UTR
TTAGAAGGTTGCTTAATTGC+TGG 0.320039 1_1:+60772495 Msa0033300:CDS
GATAGCAATGGCTTTGATTT+GGG 0.320903 1_1:+60776238 Msa0033300:three_prime_UTR
GATAATACCAGAGAATTATC+TGG 0.322687 1_1:+60776066 Msa0033300:three_prime_UTR
GGAGGTGGTGGTGGAGGCTG+CGG 0.349266 1_1:-60772132 None:intergenic
ATGCCAATCACCACGTTTCA+TGG 0.355112 1_1:-60772247 None:intergenic
AATTTACTTGCTATTATTCC+AGG 0.368563 1_1:+60773017 Msa0033300:CDS
ATAGGTGGCTCAGGTTCCTT+TGG 0.369577 1_1:+60775996 Msa0033300:three_prime_UTR
ACTAAAGATTTGGTAATTAA+GGG 0.374416 1_1:+60772273 Msa0033300:CDS
CCAGCCAATGCAGGATTGTA+TGG 0.374603 1_1:+60772768 Msa0033300:CDS
AGGGACTTATCAGGCATTTC+AGG 0.378955 1_1:+60773387 Msa0033300:CDS
AGAAGAAATTGATATGCTTC+AGG 0.379428 1_1:+60773298 Msa0033300:CDS
GGACGACCATCAGATACTTT+TGG 0.385863 1_1:-60772387 None:intergenic
CGCTGCTGCATGGCCAGTGC+AGG 0.388933 1_1:+60773367 Msa0033300:CDS
TTGGCATCGCACTAAAGATT+TGG 0.389895 1_1:+60772263 Msa0033300:CDS
GGGAAAGGAGGCTTCAATCT+TGG 0.390009 1_1:-60772747 None:intergenic
TTTGATGTTCATATCCACTA+TGG 0.391547 1_1:+60772657 Msa0033300:CDS
GGCCAGTGCAGGGACTTATC+AGG 0.394018 1_1:+60773378 Msa0033300:CDS
GGGAGGGAACAGGATGGCTT+TGG 0.394622 1_1:+60773237 Msa0033300:CDS
CCATACAATCCTGCATTGGC+TGG 0.399365 1_1:-60772768 None:intergenic
GACCCACATAAGTTGTTAGA+AGG 0.399906 1_1:+60772480 Msa0033300:CDS
AGGCTGTCGGGTCAGGGTTG+GGG 0.401343 1_1:+60773108 Msa0033300:CDS
AGGCACTGTGGAGGTGTTAG+AGG 0.402141 1_1:+60772984 Msa0033300:CDS
GCTCTCTTGGAAAGCCTTGA+AGG 0.409258 1_1:+60772711 Msa0033300:CDS
GTTGTTCTTCCTACCAAAAC+TGG 0.410931 1_1:-60772868 None:intergenic
TGCTACCTAGACTTGTCATT+TGG 0.411044 1_1:+60776103 Msa0033300:three_prime_UTR
ATCCTTAAGTCCACCAAAAT+GGG 0.414427 1_1:-60772169 None:intergenic
GGTAAGAATGCTTGTGGCTC+GGG 0.414524 1_1:+60772627 Msa0033300:CDS
CATATCAATTTCTTCTAGCT+TGG 0.414934 1_1:-60773291 None:intergenic
CTGCTGCTTACATTTACATC+AGG 0.416165 1_1:+60772535 Msa0033300:CDS
CAACCTTCTAACAACTTATG+TGG 0.418170 1_1:-60772483 None:intergenic
TGGCGAGGAAACTGCTCTCT+TGG 0.419137 1_1:+60772698 Msa0033300:CDS
TCCCTGTCTTTGCAGGTACC+AGG 0.424202 1_1:-60772444 None:intergenic
AGGAAAGAGGCTTATGCAGC+TGG 0.431549 1_1:+60772597 Msa0033300:CDS
CTCCGCGGGCGTGGTGGTGC+CGG 0.433738 1_1:+60772333 Msa0033300:CDS
TTCTTTAAAGAGGGCAGTGT+TGG 0.438040 1_1:+60772035 Msa0033300:CDS
TTTAATCCTTCTCTCAAGCT+CGG 0.451491 1_1:-60773411 None:intergenic
GTTGCTGCAGGCCACTGGTT+AGG 0.451694 1_1:+60773451 Msa0033300:CDS
GTTAATGAAATGAAGAAGTC+TGG 0.455434 1_1:+60772309 Msa0033300:CDS
TGAACGTTTAAATCTTGAAA+AGG 0.457137 1_1:+60772572 Msa0033300:CDS
AAAGGCTGTCGGGTCAGGGT+TGG 0.459117 1_1:+60773106 Msa0033300:CDS
TCGACAACAAAGTGAAAAGT+TGG 0.460382 1_1:+60772059 Msa0033300:CDS
TTGGGATTAACTTGTTCAGT+TGG 0.461887 1_1:+60776256 Msa0033300:three_prime_UTR
GTGGGCAGTGCACACCATGC+AGG 0.461947 1_1:+60773216 Msa0033300:CDS
GGGTAAGAATGCTTGTGGCT+CGG 0.464643 1_1:+60772626 Msa0033300:CDS
AAGTCTGGTCTCCGCGGGCG+TGG 0.474580 1_1:+60772324 Msa0033300:CDS
GGTGCCGGAGCTTATATTTG+TGG 0.476833 1_1:+60772678 Msa0033300:CDS
AGTGGAACAGACGATCCTCC+TGG 0.477419 1_1:-60773035 None:intergenic
TGGTAATTAAGGGTACTGAT+TGG 0.478385 1_1:+60772283 Msa0033300:CDS
CAAAGTGAAAAGTTGGGTCT+TGG 0.478410 1_1:+60772066 Msa0033300:CDS
GGCCCACGCCTTAAAATGGT+TGG 0.479873 1_1:-60772834 None:intergenic
TTAATCCTTCTCTCAAGCTC+GGG 0.491641 1_1:-60773410 None:intergenic
CCTCCTTTCCCAGCCAATGC+AGG 0.495527 1_1:+60772759 Msa0033300:CDS
CACTGTCACGAATGTGGAAA+CGG 0.495548 1_1:+60772800 Msa0033300:CDS
AACCTGGTACCTGCAAAGAC+AGG 0.497073 1_1:+60772442 Msa0033300:CDS
ATCATGGAAAGAATGAAAGT+TGG 0.499820 1_1:+60773263 Msa0033300:CDS
TTTGGAAAGATAGGTGGCTC+AGG 0.499884 1_1:+60775987 Msa0033300:three_prime_UTR
TACCGGCCCAGATAATTCTC+TGG 0.501589 1_1:-60776073 None:intergenic
TCATAAAAGCAAGATAAGAT+TGG 0.501614 1_1:-60776317 None:intergenic
ACCTATCTTTCCAAAATGAA+TGG 0.501869 1_1:-60775979 None:intergenic
TGCACAGAGGGAGTTGCTGC+AGG 0.502310 1_1:+60773439 Msa0033300:CDS
ACAAAGTTGTATTGTGTGTC+AGG 0.503324 1_1:+60772897 Msa0033300:CDS
TTTAAGGCCAGAAGGAAAAC+CGG 0.505696 1_1:-60772352 None:intergenic
CATCCTGTTCCCTCCCTGCA+TGG 0.506801 1_1:-60773230 None:intergenic
ATGTGCCAAATGACAAGTCT+AGG 0.508680 1_1:-60776108 None:intergenic
TATTTATCAATGAATGATGA+GGG 0.509425 1_1:+60776202 Msa0033300:three_prime_UTR
GGGGCATTCTTTCTTTAAAG+AGG 0.511436 1_1:+60772025 Msa0033300:CDS
CCTTGGGTGACGCTGCTGCA+TGG 0.511568 1_1:+60773357 Msa0033300:CDS
TGTTAGATTATTTAGCACTC+AGG 0.512008 1_1:+60772089 Msa0033300:CDS
AGGGAGTTGCTGCAGGCCAC+TGG 0.517762 1_1:+60773446 Msa0033300:CDS
GGGCACACAATCTGTGCCTT+GGG 0.519283 1_1:+60773341 Msa0033300:CDS
ACACCATGCAGGGAGGGAAC+AGG 0.521948 1_1:+60773227 Msa0033300:CDS
TCTGGTCTCCGCGGGCGTGG+TGG 0.522509 1_1:+60772327 Msa0033300:CDS
GAGGTGACTAAGCAAATTGA+AGG 0.524766 1_1:+60773320 Msa0033300:CDS
GTGTAGGGGTGTGACTGTAC+TGG 0.530026 1_1:+60775929 Msa0033300:intron
CCTGCATTGGCTGGGAAAGG+AGG 0.530899 1_1:-60772759 None:intergenic
CGTTAAAGGCTGTCGGGTCA+GGG 0.531170 1_1:+60773102 Msa0033300:CDS
CTCTCTTGGAAAGCCTTGAA+GGG 0.531580 1_1:+60772712 Msa0033300:CDS
TATAAGCTCCGGCACCATAG+TGG 0.532315 1_1:-60772671 None:intergenic
GTTAGATTATTTAGCACTCA+GGG 0.534637 1_1:+60772090 Msa0033300:CDS
TATGCCGTAGCAATTATGGC+TGG 0.536411 1_1:+60776044 Msa0033300:three_prime_UTR
GTGCCATGAAACGTGGTGAT+TGG 0.537777 1_1:+60772244 Msa0033300:CDS
TACCAGAGAATTATCTGGGC+CGG 0.540804 1_1:+60776071 Msa0033300:three_prime_UTR
ATGATGCGTTAAAGGCTGTC+GGG 0.542243 1_1:+60773096 Msa0033300:CDS
TTATTTATCAATGAATGATG+AGG 0.542498 1_1:+60776201 Msa0033300:three_prime_UTR
CTCGCCACAAATATAAGCTC+CGG 0.542595 1_1:-60772682 None:intergenic
TTCCACATTCGTGACAGTGG+TGG 0.542905 1_1:-60772796 None:intergenic
GTTCATATCCACTATGGTGC+CGG 0.543901 1_1:+60772663 Msa0033300:CDS
AACCGGCACCACCACGCCCG+CGG 0.543962 1_1:-60772335 None:intergenic
CTGCACGATCCTTTCCTGAA+AGG 0.545442 1_1:+60772222 Msa0033300:CDS
TTCATGGCACCTTTCAGGAA+AGG 0.548748 1_1:-60772231 None:intergenic
TCTTGAAAAGGCTAGGAAAG+AGG 0.549236 1_1:+60772584 Msa0033300:CDS
ATTTCCTCCTCAACAGTGCA+AGG 0.551416 1_1:-60772933 None:intergenic
GGGTGTGACTGTACTGGTGA+TGG 0.551833 1_1:+60775935 Msa0033300:three_prime_UTR
AGGGCACACAATCTGTGCCT+TGG 0.551896 1_1:+60773340 Msa0033300:CDS
AATCCTGCATTGGCTGGGAA+AGG 0.553642 1_1:-60772762 None:intergenic
CGACAACAAAGTGAAAAGTT+GGG 0.555059 1_1:+60772060 Msa0033300:CDS
GCTGCTGCATGGCCAGTGCA+GGG 0.555798 1_1:+60773368 Msa0033300:CDS
GTGGAGGTGTTAGAGGAGGA+TGG 0.558479 1_1:+60772991 Msa0033300:CDS
TTAGTGAACAACCTTGGTCA+AGG 0.559083 1_1:-60773474 None:intergenic
CAGTGCACACCATGCAGGGA+GGG 0.559615 1_1:+60773221 Msa0033300:CDS
CTAGGTAGCATAGTTTATAC+CGG 0.561990 1_1:-60776090 None:intergenic
TGCTGCTTACATTTACATCA+GGG 0.562041 1_1:+60772536 Msa0033300:CDS
TATGATGCGTTAAAGGCTGT+CGG 0.564534 1_1:+60773095 Msa0033300:CDS
GGGCATTCTTTCTTTAAAGA+GGG 0.565381 1_1:+60772026 Msa0033300:CDS
GTGGACTTAAGGATGAGGAC+AGG 0.565521 1_1:+60772178 Msa0033300:CDS
TAAAGAAAGAATGCCCCTCA+TGG 0.565713 1_1:-60772019 None:intergenic
GTTTAAATCTTGAAAAGGCT+AGG 0.567033 1_1:+60772577 Msa0033300:CDS
TGGGCAGTGCACACCATGCA+GGG 0.567616 1_1:+60773217 Msa0033300:CDS
TCCACATTCGTGACAGTGGT+GGG 0.567733 1_1:-60772795 None:intergenic
AGGATGGCTTTGGATGATCA+TGG 0.568598 1_1:+60773247 Msa0033300:CDS
CTAACAACTTATGTGGGTCG+TGG 0.570661 1_1:-60772476 None:intergenic
ATAATACCAGAGAATTATCT+GGG 0.572102 1_1:+60776067 Msa0033300:three_prime_UTR
TGGAGGTGTTAGAGGAGGAT+GGG 0.572442 1_1:+60772992 Msa0033300:CDS
CTCTCAATCAATTCCTTCAG+TGG 0.572682 1_1:-60772963 None:intergenic
TGAAGAAGTCTGGTCTCCGC+GGG 0.573136 1_1:+60772319 Msa0033300:CDS
CATACAATCCTGCATTGGCT+GGG 0.573562 1_1:-60772767 None:intergenic
GATTAAAGAGAATGCACAGA+GGG 0.574047 1_1:+60773427 Msa0033300:CDS
AGGTTGCTTAATTGCTGGAG+TGG 0.575339 1_1:+60772500 Msa0033300:CDS
GGTTGCTTAATTGCTGGAGT+GGG 0.576818 1_1:+60772501 Msa0033300:CDS
GCATTAACGACAAGGTAAGA+AGG 0.579351 1_1:-60772408 None:intergenic
TTCTACAAGCATGAAAGCTG+TGG 0.583506 1_1:+60773197 Msa0033300:CDS
GGAAAGAGGCTTATGCAGCT+GGG 0.584662 1_1:+60772598 Msa0033300:CDS
CAAGCCTTGCACTGTTGAGG+AGG 0.585328 1_1:+60772929 Msa0033300:CDS
TTCAGGTTGGATAACCATGA+GGG 0.585550 1_1:+60772005 Msa0033300:intron
TTGGTAGGAAGAACAACGCT+GGG 0.586441 1_1:+60772874 Msa0033300:CDS
TTATCCAGCCATAATTGCTA+CGG 0.589107 1_1:-60776048 None:intergenic
TCCCACCACTGTCACGAATG+TGG 0.590794 1_1:+60772794 Msa0033300:CDS
TCAGGCCCGAGCTTGAGAGA+AGG 0.594528 1_1:+60773405 Msa0033300:CDS
GGATAAGTCTACTGATGTTG+TGG 0.594551 1_1:+60773151 Msa0033300:CDS
GGAAATGAGTATGCCACTGA+AGG 0.595605 1_1:+60772950 Msa0033300:CDS
ACAACCATACAATCCTGCAT+TGG 0.599505 1_1:-60772772 None:intergenic
TGATGAGGGATAATGTCCAC+TGG 0.600296 1_1:+60776216 Msa0033300:three_prime_UTR
AATGACCATTTAAGGCCAGA+AGG 0.600503 1_1:-60772360 None:intergenic
AGAAGTAGCAATAAAGCCAA+AGG 0.603408 1_1:-60776012 None:intergenic
ATCGTGCAGCCCATACAAGT+TGG 0.603550 1_1:-60772208 None:intergenic
TGCCTGATAAGTCCCTGCAC+TGG 0.605349 1_1:-60773380 None:intergenic
AACCTTCTAACAACTTATGT+GGG 0.607755 1_1:-60772482 None:intergenic
GAAAGCCTTGAAGGGAAACA+AGG 0.608729 1_1:+60772720 Msa0033300:CDS
CACTGAAGGAATTGATTGAG+AGG 0.609421 1_1:+60772964 Msa0033300:CDS
CGTTTCCACATTCGTGACAG+TGG 0.610925 1_1:-60772799 None:intergenic
TGTATGTGACGATGTTCTGA+TGG 0.610973 1_1:+60773070 Msa0033300:CDS
CCATGCAGCAGCGTCACCCA+AGG 0.611186 1_1:-60773357 None:intergenic
CACTGTGGAGGTGTTAGAGG+AGG 0.611510 1_1:+60772987 Msa0033300:CDS
TTTATGCCAAAAGTATCTGA+TGG 0.613229 1_1:+60772381 Msa0033300:CDS
CGGAGCTTATATTTGTGGCG+AGG 0.614507 1_1:+60772683 Msa0033300:CDS
ACCTGGTACCTGCAAAGACA+GGG 0.616822 1_1:+60772443 Msa0033300:CDS
GACTGCAGCTGTGATTGTGA+TGG 0.616963 1_1:+60773130 Msa0033300:CDS
GAAGTACGAGAGCCTTGCAA+TGG 0.620315 1_1:-60773177 None:intergenic
TCTACAAGCATGAAAGCTGT+GGG 0.623427 1_1:+60773198 Msa0033300:CDS
TTTGGTAGGAAGAACAACGC+TGG 0.626357 1_1:+60772873 Msa0033300:CDS
ATGAAGAAGTCTGGTCTCCG+CGG 0.627278 1_1:+60772318 Msa0033300:CDS
TCAAAGCCATTGCTATCCAG+TGG 0.634153 1_1:-60776232 None:intergenic
TAATGTCCACTGGATAGCAA+TGG 0.637003 1_1:+60776226 Msa0033300:three_prime_UTR
CACTGGTTAGGCCTTGACCA+AGG 0.639250 1_1:+60773463 Msa0033300:exon
GAACAAGCCTTGCACTGTTG+AGG 0.643191 1_1:+60772926 Msa0033300:CDS
TTACTTGCTATTATTCCAGG+AGG 0.643385 1_1:+60773020 Msa0033300:CDS
AATGCTGATGAAAGTGAACC+TGG 0.649000 1_1:+60772426 Msa0033300:CDS
ATGTTGTGGATGCCATTGCA+AGG 0.653885 1_1:+60773165 Msa0033300:CDS
GCTGCTTACATTTACATCAG+GGG 0.656016 1_1:+60772537 Msa0033300:CDS
TCAGGTTGGATAACCATGAG+GGG 0.658960 1_1:+60772006 Msa0033300:intron
TTTCAGGTTGGATAACCATG+AGG 0.662685 1_1:+60772004 Msa0033300:intron
AGGTGACTAAGCAAATTGAA+GGG 0.667912 1_1:+60773321 Msa0033300:CDS
TTTCATCAGCATTAACGACA+AGG 0.668940 1_1:-60772416 None:intergenic
AGAAATTGATATGCTTCAGG+AGG 0.669112 1_1:+60773301 Msa0033300:CDS
CTGAAAGGTGCCATGAAACG+TGG 0.674281 1_1:+60772237 Msa0033300:CDS
CTTGGTCAAGGCCTAACCAG+TGG 0.685204 1_1:-60773462 None:intergenic
CATGCAGGGAGGGAACAGGA+TGG 0.688364 1_1:+60773231 Msa0033300:CDS
GCAGTGCACACCATGCAGGG+AGG 0.698790 1_1:+60773220 Msa0033300:CDS
GAATTGATTGAGAGGCACTG+TGG 0.702082 1_1:+60772972 Msa0033300:CDS
GGATTAAAGAGAATGCACAG+AGG 0.752207 1_1:+60773426 Msa0033300:CDS
TTGATTGAGAGGCACTGTGG+AGG 0.756372 1_1:+60772975 Msa0033300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAGAAATTCATATA+TGG + chr1_1:60774444-60774463 Msa0033300:intron 10.0%
!! TGAAAATTCTTAATTATAAA+AGG + chr1_1:60774682-60774701 Msa0033300:intron 10.0%
!!! TTAAGTTGTTTATCTAATTA+TGG + chr1_1:60771480-60771499 Msa0033300:intron 15.0%
!! AAAACAATACTAGTAAAATT+GGG - chr1_1:60771578-60771597 None:intergenic 15.0%
!! TAAAACAATACTAGTAAAAT+TGG - chr1_1:60771579-60771598 None:intergenic 15.0%
!! TAAAACAATGCTATAAAAAT+TGG - chr1_1:60771913-60771932 None:intergenic 15.0%
!!! ATAAATTTAGCTTAAATTGA+AGG + chr1_1:60773576-60773595 Msa0033300:intron 15.0%
!! TTAATATAAAAAGATATCTG+TGG + chr1_1:60774577-60774596 Msa0033300:intron 15.0%
!! TAATATAAAAAGATATCTGT+GGG + chr1_1:60774578-60774597 Msa0033300:intron 15.0%
!! TTCAAAAAAAAAAAACTGTT+TGG - chr1_1:60774666-60774685 None:intergenic 15.0%
!!! ATCAATTATTTTGTGTATAA+TGG + chr1_1:60775354-60775373 Msa0033300:intron 15.0%
!!! GAATTTTCAATTAGTTTGTT+TGG + chr1_1:60771243-60771262 Msa0033300:intron 20.0%
!!! ATTAACTTAAATGCTTTGTT+TGG + chr1_1:60771966-60771985 Msa0033300:intron 20.0%
!!! GAAACATGATTTTTTTTTTC+AGG + chr1_1:60771988-60772007 Msa0033300:intron 20.0%
!!! ACTAAAGATTTGGTAATTAA+GGG + chr1_1:60772273-60772292 Msa0033300:CDS 20.0%
!! AATATGTTAGTTGTTTAGAT+AGG + chr1_1:60773609-60773628 Msa0033300:intron 20.0%
!! TGAATGTTTATCTTAGAATT+TGG + chr1_1:60773712-60773731 Msa0033300:intron 20.0%
!! GAATGTTTATCTTAGAATTT+GGG + chr1_1:60773713-60773732 Msa0033300:intron 20.0%
!! GATAAACAATGTTTATAAGT+GGG - chr1_1:60774047-60774066 None:intergenic 20.0%
!! TCTAGCTATTGATAAAAAAT+TGG + chr1_1:60775041-60775060 Msa0033300:intron 20.0%
!! AAAAATTGGCTAAATTACAT+CGG + chr1_1:60775055-60775074 Msa0033300:intron 20.0%
!!! AATTGGTCTTTAAGTTATTT+TGG + chr1_1:60775105-60775124 Msa0033300:intron 20.0%
!!! ATTGATCCTTTAAGTTATTT+TGG + chr1_1:60775165-60775184 Msa0033300:intron 20.0%
!! ATGTAACAAAAACAACTTAA+AGG + chr1_1:60775640-60775659 Msa0033300:intron 20.0%
!!! TTTTCAGGCTAATATTTTTT+AGG - chr1_1:60775715-60775734 None:intergenic 20.0%
!!! GTTTTTCTCTTTTAATATGT+TGG + chr1_1:60775759-60775778 Msa0033300:intron 20.0%
!!! TATGTTGGTATTTTTGTTAT+TGG + chr1_1:60775774-60775793 Msa0033300:intron 20.0%
!!! ATGTTGGTATTTTTGTTATT+GGG + chr1_1:60775775-60775794 Msa0033300:intron 20.0%
!! TTATTTATCAATGAATGATG+AGG + chr1_1:60776201-60776220 Msa0033300:three_prime_UTR 20.0%
!! TATTTATCAATGAATGATGA+GGG + chr1_1:60776202-60776221 Msa0033300:three_prime_UTR 20.0%
!!! TTCATGTGCTTTGATTTTAT+TGG + chr1_1:60771548-60771567 Msa0033300:intron 25.0%
!! TATATGACTATCTTTAGCTT+TGG + chr1_1:60771597-60771616 Msa0033300:intron 25.0%
!!! TGTTTGGTTTGAATTCATTA+AGG + chr1_1:60771622-60771641 Msa0033300:intron 25.0%
!!! GTTTGGTTTGAATTCATTAA+GGG + chr1_1:60771623-60771642 Msa0033300:intron 25.0%
!! AGTTTTCAAATAACCACTTA+GGG - chr1_1:60771838-60771857 None:intergenic 25.0%
!! AAGTTTTCAAATAACCACTT+AGG - chr1_1:60771839-60771858 None:intergenic 25.0%
!!! TTGTTTTATTTGACTATCTG+TGG + chr1_1:60771925-60771944 Msa0033300:intron 25.0%
!!! CATGATTTTTTTTTTCAGGT+TGG + chr1_1:60771992-60772011 Msa0033300:intron 25.0%
!! CACTAAAGATTTGGTAATTA+AGG + chr1_1:60772272-60772291 Msa0033300:CDS 25.0%
! TGAACGTTTAAATCTTGAAA+AGG + chr1_1:60772572-60772591 Msa0033300:CDS 25.0%
!!! AATTTACTTGCTATTATTCC+AGG + chr1_1:60773017-60773036 Msa0033300:CDS 25.0%
!!! TATCAGCTATTTCTGTAAAT+GGG - chr1_1:60773527-60773546 None:intergenic 25.0%
!!! TTATCAGCTATTTCTGTAAA+TGG - chr1_1:60773528-60773547 None:intergenic 25.0%
! ATAGCTGATAAATAAACACA+TGG + chr1_1:60773537-60773556 Msa0033300:intron 25.0%
! TAGCTGATAAATAAACACAT+GGG + chr1_1:60773538-60773557 Msa0033300:intron 25.0%
!! TTTATCTTAGAATTTGGGTT+AGG + chr1_1:60773718-60773737 Msa0033300:intron 25.0%
! AATTCATTAGGTCACATTAT+CGG - chr1_1:60773962-60773981 None:intergenic 25.0%
! TAATGTGACCTAATGAATTT+AGG + chr1_1:60773963-60773982 Msa0033300:intron 25.0%
! GGATAAACAATGTTTATAAG+TGG - chr1_1:60774048-60774067 None:intergenic 25.0%
! CCTAAACAATGTTTATAAGT+GGG - chr1_1:60774190-60774209 None:intergenic 25.0%
!!! AGTGTTGAAATCTCATTTTA+AGG + chr1_1:60774256-60774275 Msa0033300:intron 25.0%
!! GTGTTGAAATCTCATTTTAA+GGG + chr1_1:60774257-60774276 Msa0033300:intron 25.0%
!!! CTGCTTAAAGAAAGTTTTAA+CGG + chr1_1:60774326-60774345 Msa0033300:intron 25.0%
!!! TAACGGTTTGCTTAATTTTA+TGG + chr1_1:60774343-60774362 Msa0033300:intron 25.0%
!!! AACGGTTTGCTTAATTTTAT+GGG + chr1_1:60774344-60774363 Msa0033300:intron 25.0%
!!! TTAGTTTTTAAAGTAGTTCC+TGG + chr1_1:60774370-60774389 Msa0033300:intron 25.0%
!!! TAGTTTTTAAAGTAGTTCCT+GGG + chr1_1:60774371-60774390 Msa0033300:intron 25.0%
!!! AACACATTTCTTTTGATTAG+AGG + chr1_1:60774398-60774417 Msa0033300:intron 25.0%
! TTTAGAAATTCATATATGGC+TGG + chr1_1:60774448-60774467 Msa0033300:intron 25.0%
! CATAATTACATGAACAACAT+GGG - chr1_1:60774524-60774543 None:intergenic 25.0%
! ACATAATTACATGAACAACA+TGG - chr1_1:60774525-60774544 None:intergenic 25.0%
! TTTGTGTGATATGCTTTAAT+TGG + chr1_1:60774544-60774563 Msa0033300:intron 25.0%
! TAAGAAGAGAAGTCAAAAAT+AGG - chr1_1:60774630-60774649 None:intergenic 25.0%
! TCTCTTCTTAAAAAGAAGTT+AGG + chr1_1:60774640-60774659 Msa0033300:intron 25.0%
!!! TTTTTCAGAAATTAGTCGAA+AGG + chr1_1:60774743-60774762 Msa0033300:intron 25.0%
!!! TTTGGTGATTGTTATTTTCT+AGG - chr1_1:60774840-60774859 None:intergenic 25.0%
!! TAGAAACAAAGCTAAAGTTT+TGG - chr1_1:60774858-60774877 None:intergenic 25.0%
! AAAATTGGCTAAATTACATC+GGG + chr1_1:60775056-60775075 Msa0033300:intron 25.0%
! ATTACAAACCTCAAACTTAA+AGG - chr1_1:60775143-60775162 None:intergenic 25.0%
! GAAAACGTTTACAAACTTAA+AGG - chr1_1:60775551-60775570 None:intergenic 25.0%
! TCATAAATAATGACAATGAG+AGG + chr1_1:60775391-60775410 Msa0033300:intron 25.0%
! CATAAATAATGACAATGAGA+GGG + chr1_1:60775392-60775411 Msa0033300:intron 25.0%
!!! ATCATTGTTTTTGTAACGTT+TGG + chr1_1:60775509-60775528 Msa0033300:intron 25.0%
! GAAAACGTTTACAAACTTAA+AGG + chr1_1:60775551-60775570 Msa0033300:intron 25.0%
!!! ATTGGTCCTTTAAGTTATTT+TGG - chr1_1:60775589-60775608 None:intergenic 25.0%
! ATATAAGTCCTATAAGTTTG+AGG - chr1_1:60775622-60775641 None:intergenic 25.0%
! AACTTTCTTTCACATTTACA+TGG - chr1_1:60775811-60775830 None:intergenic 25.0%
!! GATGAAATTTTCAGCATAAT+TGG - chr1_1:60775846-60775865 None:intergenic 25.0%
! TGAAAATTTCATCTTTCCTA+GGG + chr1_1:60775853-60775872 Msa0033300:intron 25.0%
! ATTTGTACTGTATTATGTGT+AGG + chr1_1:60775913-60775932 Msa0033300:intron 25.0%
! TTTGTACTGTATTATGTGTA+GGG + chr1_1:60775914-60775933 Msa0033300:intron 25.0%
! ATAATACCAGAGAATTATCT+GGG + chr1_1:60776067-60776086 Msa0033300:three_prime_UTR 25.0%
! TCATAAAAGCAAGATAAGAT+TGG - chr1_1:60776320-60776339 None:intergenic 25.0%
! AGAACAACTTATAGCTTGTA+CGG + chr1_1:60771373-60771392 Msa0033300:intron 30.0%
AATTATGGTCTACAGCTAAT+TGG + chr1_1:60771495-60771514 Msa0033300:intron 30.0%
! TCTACAGCTAATTGGTAATT+TGG + chr1_1:60771503-60771522 Msa0033300:intron 30.0%
TCAAATAAGTCAATCGAAAG+AGG - chr1_1:60771649-60771668 None:intergenic 30.0%
! TTGTTTTCGATAAGCTATCT+TGG - chr1_1:60771720-60771739 None:intergenic 30.0%
TACAAACTGTTTATCCAAAC+AGG + chr1_1:60771812-60771831 Msa0033300:intron 30.0%
! AAAATTGGCTATCAGCTTTT+GGG - chr1_1:60771898-60771917 None:intergenic 30.0%
! AAAAATTGGCTATCAGCTTT+TGG - chr1_1:60771899-60771918 None:intergenic 30.0%
TGTTAGATTATTTAGCACTC+AGG + chr1_1:60772089-60772108 Msa0033300:CDS 30.0%
GTTAGATTATTTAGCACTCA+GGG + chr1_1:60772090-60772109 Msa0033300:CDS 30.0%
! AGGATTTTTACCAACTTGTA+TGG + chr1_1:60772198-60772217 Msa0033300:CDS 30.0%
! GGATTTTTACCAACTTGTAT+GGG + chr1_1:60772199-60772218 Msa0033300:CDS 30.0%
GTTAATGAAATGAAGAAGTC+TGG + chr1_1:60772309-60772328 Msa0033300:CDS 30.0%
TTGGCATAAATGACCATTTA+AGG - chr1_1:60772371-60772390 None:intergenic 30.0%
!! TTTATGCCAAAAGTATCTGA+TGG + chr1_1:60772381-60772400 Msa0033300:CDS 30.0%
AACCTTCTAACAACTTATGT+GGG - chr1_1:60772485-60772504 None:intergenic 30.0%
GTTTAAATCTTGAAAAGGCT+AGG + chr1_1:60772577-60772596 Msa0033300:CDS 30.0%
TTTGATGTTCATATCCACTA+TGG + chr1_1:60772657-60772676 Msa0033300:CDS 30.0%
ATCATGGAAAGAATGAAAGT+TGG + chr1_1:60773263-60773282 Msa0033300:CDS 30.0%
! CATATCAATTTCTTCTAGCT+TGG - chr1_1:60773294-60773313 None:intergenic 30.0%
AGAAGAAATTGATATGCTTC+AGG + chr1_1:60773298-60773317 Msa0033300:CDS 30.0%
AACAATTTAGTGAACAACCT+TGG - chr1_1:60773483-60773502 None:intergenic 30.0%
TGGGATTAAAAGCAAAATGA+GGG - chr1_1:60773508-60773527 None:intergenic 30.0%
ATGGGATTAAAAGCAAAATG+AGG - chr1_1:60773509-60773528 None:intergenic 30.0%
!! CTCACATTTAAGTTTTCCAA+AGG - chr1_1:60773646-60773665 None:intergenic 30.0%
!! TTGAAAAGGTGTTTATAAGG+GGG - chr1_1:60773787-60773806 None:intergenic 30.0%
!! CTTGAAAAGGTGTTTATAAG+GGG - chr1_1:60773788-60773807 None:intergenic 30.0%
!! GCTTGAAAAGGTGTTTATAA+GGG - chr1_1:60773789-60773808 None:intergenic 30.0%
ATTCATTAGGTCACATTATC+GGG - chr1_1:60773961-60773980 None:intergenic 30.0%
AAACAATGTTTATAAGTGGG+AGG - chr1_1:60774044-60774063 None:intergenic 30.0%
AAACAATGTTTATAAGTGGG+AGG - chr1_1:60774044-60774063 None:intergenic 30.0%
CCCACTTATAAACATTGTTT+AGG + chr1_1:60774044-60774063 Msa0033300:intron 30.0%
GCCTAAACAATGTTTATAAG+TGG - chr1_1:60774191-60774210 None:intergenic 30.0%
GGCTTGTATTTGTATGTATT+TGG + chr1_1:60774419-60774438 Msa0033300:intron 30.0%
GGTAAGAAATATTGTGTGTT+TGG + chr1_1:60774599-60774618 Msa0033300:intron 30.0%
TAAAAAAAAGCTAAGCCAAG+TGG + chr1_1:60774921-60774940 Msa0033300:intron 30.0%
!!! TCACGGGTAATTTTTTGTTT+AGG + chr1_1:60774990-60775009 Msa0033300:intron 30.0%
!! ATAGCTAGAATTTTGACACA+TGG - chr1_1:60775030-60775049 None:intergenic 30.0%
AAATTGGCTAAATTACATCG+GGG + chr1_1:60775057-60775076 Msa0033300:intron 30.0%
GTTACAAACCTCAAACTTAA+AGG - chr1_1:60775084-60775103 None:intergenic 30.0%
! GTTTGAGGTTTGTAACAAAT+TGG + chr1_1:60775088-60775107 Msa0033300:intron 30.0%
GTGTGACCAAAATAACTTAA+AGG - chr1_1:60775580-60775599 None:intergenic 30.0%
GTTTGTAAACGATTGACATT+AGG + chr1_1:60775316-60775335 Msa0033300:intron 30.0%
!! ATATTCTAAGATGTCTGATG+AGG + chr1_1:60775455-60775474 Msa0033300:intron 30.0%
ACGTTACAAAAACAATGATG+TGG - chr1_1:60775508-60775527 None:intergenic 30.0%
GTGTGACCAAAATAACTTAA+AGG + chr1_1:60775580-60775599 Msa0033300:intron 30.0%
GTTACAAACGTCAAACTTAA+AGG + chr1_1:60775671-60775690 Msa0033300:intron 30.0%
! ATATTAGCCTGAAAAATGCT+AGG + chr1_1:60775720-60775739 Msa0033300:intron 30.0%
! ATATGAACCTAGCATTTTTC+AGG - chr1_1:60775730-60775749 None:intergenic 30.0%
CTGAAAATTTCATCTTTCCT+AGG + chr1_1:60775852-60775871 Msa0033300:intron 30.0%
TTGTACTGTATTATGTGTAG+GGG + chr1_1:60775915-60775934 Msa0033300:intron 30.0%
ACCTATCTTTCCAAAATGAA+TGG - chr1_1:60775982-60776001 None:intergenic 30.0%
!! ATTCATTTTGGAAAGATAGG+TGG + chr1_1:60775981-60776000 Msa0033300:three_prime_UTR 30.0%
GATAATACCAGAGAATTATC+TGG + chr1_1:60776066-60776085 Msa0033300:three_prime_UTR 30.0%
! ATTTGGAAGCTTGTCTTTTG+AGG + chr1_1:60771520-60771539 Msa0033300:intron 35.0%
!! ATCTTTAGCTTTGGACTGTT+TGG + chr1_1:60771606-60771625 Msa0033300:intron 35.0%
! TCGATTGACTTATTTGAGCT+TGG + chr1_1:60771652-60771671 Msa0033300:intron 35.0%
! CGATTGACTTATTTGAGCTT+GGG + chr1_1:60771653-60771672 Msa0033300:intron 35.0%
TTGACTATCTGTGGACAATT+TGG + chr1_1:60771934-60771953 Msa0033300:intron 35.0%
! GGGCATTCTTTCTTTAAAGA+GGG + chr1_1:60772026-60772045 Msa0033300:CDS 35.0%
TCGACAACAAAGTGAAAAGT+TGG + chr1_1:60772059-60772078 Msa0033300:CDS 35.0%
CGACAACAAAGTGAAAAGTT+GGG + chr1_1:60772060-60772079 Msa0033300:CDS 35.0%
ATCCTTAAGTCCACCAAAAT+GGG - chr1_1:60772172-60772191 None:intergenic 35.0%
!! TGGTAATTAAGGGTACTGAT+TGG + chr1_1:60772283-60772302 Msa0033300:CDS 35.0%
TTTCATCAGCATTAACGACA+AGG - chr1_1:60772419-60772438 None:intergenic 35.0%
CAACCTTCTAACAACTTATG+TGG - chr1_1:60772486-60772505 None:intergenic 35.0%
TTAGAAGGTTGCTTAATTGC+TGG + chr1_1:60772495-60772514 Msa0033300:CDS 35.0%
! TGCTGCTTACATTTACATCA+GGG + chr1_1:60772536-60772555 Msa0033300:CDS 35.0%
!! CTGTTTCTCCAACCATTTTA+AGG + chr1_1:60772826-60772845 Msa0033300:CDS 35.0%
ACAAAGTTGTATTGTGTGTC+AGG + chr1_1:60772897-60772916 Msa0033300:CDS 35.0%
!! TTACTTGCTATTATTCCAGG+AGG + chr1_1:60773020-60773039 Msa0033300:CDS 35.0%
!!! CATACATGTTTTGGAATCAG+TGG - chr1_1:60773056-60773075 None:intergenic 35.0%
! ACATCGTCACATACATGTTT+TGG - chr1_1:60773065-60773084 None:intergenic 35.0%
!! GATGGATTATGATGCGTTAA+AGG + chr1_1:60773088-60773107 Msa0033300:CDS 35.0%
AGAAATTGATATGCTTCAGG+AGG + chr1_1:60773301-60773320 Msa0033300:CDS 35.0%
AGGTGACTAAGCAAATTGAA+GGG + chr1_1:60773321-60773340 Msa0033300:CDS 35.0%
TTTAATCCTTCTCTCAAGCT+CGG - chr1_1:60773414-60773433 None:intergenic 35.0%
GATTAAAGAGAATGCACAGA+GGG + chr1_1:60773427-60773446 Msa0033300:CDS 35.0%
!! AATGTGAGAGCTTGTTACTA+TGG + chr1_1:60773658-60773677 Msa0033300:intron 35.0%
ATGTTATTCCGATGAAGTGA+TGG + chr1_1:60773685-60773704 Msa0033300:intron 35.0%
!! GGCTTGAAAAGGTGTTTATA+AGG - chr1_1:60773790-60773809 None:intergenic 35.0%
! TTTTGTTGAAAGTCCTGCAT+TGG - chr1_1:60773822-60773841 None:intergenic 35.0%
GTTCATTAGGTCACATTATC+GGG - chr1_1:60773892-60773911 None:intergenic 35.0%
GGTTCATTAGGTCACATTAT+CGG - chr1_1:60773893-60773912 None:intergenic 35.0%
GAGTCTGTCCTAAATTCATT+AGG - chr1_1:60773974-60773993 None:intergenic 35.0%
ACACAAACCTGAGTAGTAAT+GGG + chr1_1:60774011-60774030 Msa0033300:intron 35.0%
GAGTTTGTCCTAAATCCATT+TGG - chr1_1:60774117-60774136 None:intergenic 35.0%
ACACAAACCCAAGTAGTAAT+GGG + chr1_1:60774154-60774173 Msa0033300:intron 35.0%
! AGCTACATCCTTTTCTTTGA+GGG - chr1_1:60774294-60774313 None:intergenic 35.0%
! AAGCTACATCCTTTTCTTTG+AGG - chr1_1:60774295-60774314 None:intergenic 35.0%
!!! AAGGAGCTTTTTCAGAAGTT+AGG + chr1_1:60774762-60774781 Msa0033300:intron 35.0%
TTACATACTATAGCTCCACT+TGG - chr1_1:60774939-60774958 None:intergenic 35.0%
AAATTACCCGTGATAAACTC+TGG - chr1_1:60774983-60775002 None:intergenic 35.0%
! ACGTAAGTCCTTTAAGTTTG+AGG + chr1_1:60775132-60775151 Msa0033300:intron 35.0%
TGTAACGTTTGGTTAACAGA+AGG - chr1_1:60775520-60775539 None:intergenic 35.0%
!! GTCATCGTTTTTGTAACGTT+TGG - chr1_1:60775245-60775264 None:intergenic 35.0%
TGACAGTTAAGTGTATGATG+TGG + chr1_1:60775286-60775305 Msa0033300:intron 35.0%
! TGTATAATGGCTTCGATTTG+AGG + chr1_1:60775367-60775386 Msa0033300:intron 35.0%
GTTACGAACCTCAAACTTAT+AGG + chr1_1:60775611-60775630 Msa0033300:intron 35.0%
GTTTGACGTTTGTAACAGAT+AGG - chr1_1:60775667-60775686 None:intergenic 35.0%
!! TAAAGCAGTGCCATTCATTT+TGG + chr1_1:60775969-60775988 Msa0033300:three_prime_UTR 35.0%
!! GCCATTCATTTTGGAAAGAT+AGG + chr1_1:60775978-60775997 Msa0033300:three_prime_UTR 35.0%
AGAAGTAGCAATAAAGCCAA+AGG - chr1_1:60776015-60776034 None:intergenic 35.0%
! CTTTTATGCCGTAGCAATTA+TGG + chr1_1:60776040-60776059 Msa0033300:three_prime_UTR 35.0%
TTATCCAGCCATAATTGCTA+CGG - chr1_1:60776051-60776070 None:intergenic 35.0%
CTAGGTAGCATAGTTTATAC+CGG - chr1_1:60776093-60776112 None:intergenic 35.0%
!! GATAGCAATGGCTTTGATTT+GGG + chr1_1:60776238-60776257 Msa0033300:three_prime_UTR 35.0%
!! TTGGGATTAACTTGTTCAGT+TGG + chr1_1:60776256-60776275 Msa0033300:three_prime_UTR 35.0%
! CTCACGTGCTCTGATTTTAT+TGG + chr1_1:60771868-60771887 Msa0033300:intron 40.0%
!! TTTCAGGTTGGATAACCATG+AGG + chr1_1:60772004-60772023 Msa0033300:intron 40.0%
!! TTCAGGTTGGATAACCATGA+GGG + chr1_1:60772005-60772024 Msa0033300:intron 40.0%
TAAAGAAAGAATGCCCCTCA+TGG - chr1_1:60772022-60772041 None:intergenic 40.0%
! GGGGCATTCTTTCTTTAAAG+AGG + chr1_1:60772025-60772044 Msa0033300:CDS 40.0%
! TTCTTTAAAGAGGGCAGTGT+TGG + chr1_1:60772035-60772054 Msa0033300:CDS 40.0%
CAAAGTGAAAAGTTGGGTCT+TGG + chr1_1:60772066-60772085 Msa0033300:CDS 40.0%
!! ACCAAAATGGGTTTTCTCTG+GGG - chr1_1:60772160-60772179 None:intergenic 40.0%
!! CACCAAAATGGGTTTTCTCT+GGG - chr1_1:60772161-60772180 None:intergenic 40.0%
!!! AACCCATTTTGGTGGACTTA+AGG + chr1_1:60772167-60772186 Msa0033300:CDS 40.0%
CATCCTTAAGTCCACCAAAA+TGG - chr1_1:60772173-60772192 None:intergenic 40.0%
!!! TTTTGGTGGACTTAAGGATG+AGG + chr1_1:60772173-60772192 Msa0033300:CDS 40.0%
TTGGCATCGCACTAAAGATT+TGG + chr1_1:60772263-60772282 Msa0033300:CDS 40.0%
! TTTAAGGCCAGAAGGAAAAC+CGG - chr1_1:60772355-60772374 None:intergenic 40.0%
!!! GTTTTCCTTCTGGCCTTAAA+TGG + chr1_1:60772355-60772374 Msa0033300:CDS 40.0%
! AATGACCATTTAAGGCCAGA+AGG - chr1_1:60772363-60772382 None:intergenic 40.0%
GCATTAACGACAAGGTAAGA+AGG - chr1_1:60772411-60772430 None:intergenic 40.0%
AATGCTGATGAAAGTGAACC+TGG + chr1_1:60772426-60772445 Msa0033300:CDS 40.0%
GACCCACATAAGTTGTTAGA+AGG + chr1_1:60772480-60772499 Msa0033300:CDS 40.0%
! CTGCTGCTTACATTTACATC+AGG + chr1_1:60772535-60772554 Msa0033300:CDS 40.0%
GCTGCTTACATTTACATCAG+GGG + chr1_1:60772537-60772556 Msa0033300:CDS 40.0%
TCTTGAAAAGGCTAGGAAAG+AGG + chr1_1:60772584-60772603 Msa0033300:CDS 40.0%
!! CTTTTGGGTAAGAATGCTTG+TGG + chr1_1:60772621-60772640 Msa0033300:CDS 40.0%
! GTTTACCTTGTTTCCCTTCA+AGG - chr1_1:60772728-60772747 None:intergenic 40.0%
ACAACCATACAATCCTGCAT+TGG - chr1_1:60772775-60772794 None:intergenic 40.0%
!! AATGGTTTGCCAGTTTTGGT+AGG + chr1_1:60772859-60772878 Msa0033300:CDS 40.0%
GTTGTTCTTCCTACCAAAAC+TGG - chr1_1:60772871-60772890 None:intergenic 40.0%
CTCTCAATCAATTCCTTCAG+TGG - chr1_1:60772966-60772985 None:intergenic 40.0%
CACTGAAGGAATTGATTGAG+AGG + chr1_1:60772964-60772983 Msa0033300:CDS 40.0%
TGTATGTGACGATGTTCTGA+TGG + chr1_1:60773070-60773089 Msa0033300:CDS 40.0%
TATGATGCGTTAAAGGCTGT+CGG + chr1_1:60773095-60773114 Msa0033300:CDS 40.0%
GGATAAGTCTACTGATGTTG+TGG + chr1_1:60773151-60773170 Msa0033300:CDS 40.0%
TTCTACAAGCATGAAAGCTG+TGG + chr1_1:60773197-60773216 Msa0033300:CDS 40.0%
TCTACAAGCATGAAAGCTGT+GGG + chr1_1:60773198-60773217 Msa0033300:CDS 40.0%
GAGGTGACTAAGCAAATTGA+AGG + chr1_1:60773320-60773339 Msa0033300:CDS 40.0%
TTAATCCTTCTCTCAAGCTC+GGG - chr1_1:60773413-60773432 None:intergenic 40.0%
GGATTAAAGAGAATGCACAG+AGG + chr1_1:60773426-60773445 Msa0033300:CDS 40.0%
TTAGTGAACAACCTTGGTCA+AGG - chr1_1:60773477-60773496 None:intergenic 40.0%
ATAGGTATGAGAGATGCCTT+TGG + chr1_1:60773627-60773646 Msa0033300:intron 40.0%
TTCAACAGCCATCACTTCAT+CGG - chr1_1:60773696-60773715 None:intergenic 40.0%
GGTCTAACAATCACACAAAG+CGG + chr1_1:60773739-60773758 Msa0033300:intron 40.0%
GTCTAACAATCACACAAAGC+GGG + chr1_1:60773740-60773759 Msa0033300:intron 40.0%
GGATGTGATATGGCTTGAAA+AGG - chr1_1:60773801-60773820 None:intergenic 40.0%
CATTACTACTCAGGTTTGTG+TGG - chr1_1:60774012-60774031 None:intergenic 40.0%
CACACAAACCTGAGTAGTAA+TGG + chr1_1:60774010-60774029 Msa0033300:intron 40.0%
! AAACCTGAGTAGTAATGGGA+GGG + chr1_1:60774015-60774034 Msa0033300:intron 40.0%
CACGCAAGTTAGCTACAATT+TGG - chr1_1:60774069-60774088 None:intergenic 40.0%
CATTACTACTTGGGTTTGTG+TGG - chr1_1:60774155-60774174 None:intergenic 40.0%
CACACAAACCCAAGTAGTAA+TGG + chr1_1:60774153-60774172 Msa0033300:intron 40.0%
CATTCCTCCCATTACTACTT+GGG - chr1_1:60774164-60774183 None:intergenic 40.0%
! AGCTTGTTCCCTCAAAGAAA+AGG + chr1_1:60774283-60774302 Msa0033300:intron 40.0%
TTCTGTGCCAGAGTTTATCA+CGG + chr1_1:60774973-60774992 Msa0033300:intron 40.0%
! GTTTGAGGTTCGTAACAGAT+TGG - chr1_1:60775607-60775626 None:intergenic 40.0%
CAAACAAGTAGATCTTCCCT+AGG - chr1_1:60775872-60775891 None:intergenic 40.0%
GGGAAGATCTACTTGTTTGA+TGG + chr1_1:60775873-60775892 Msa0033300:intron 40.0%
TGCTACCTAGACTTGTCATT+TGG + chr1_1:60776103-60776122 Msa0033300:three_prime_UTR 40.0%
ATGTGCCAAATGACAAGTCT+AGG - chr1_1:60776111-60776130 None:intergenic 40.0%
TAATGTCCACTGGATAGCAA+TGG + chr1_1:60776226-60776245 Msa0033300:three_prime_UTR 40.0%
!! GGATAGCAATGGCTTTGATT+TGG + chr1_1:60776237-60776256 Msa0033300:three_prime_UTR 40.0%
TTATCCAAACAGGCCCTAAG+TGG + chr1_1:60771822-60771841 Msa0033300:intron 45.0%
ATAACCACTTAGGGCCTGTT+TGG - chr1_1:60771829-60771848 None:intergenic 45.0%
!! TCAGGTTGGATAACCATGAG+GGG + chr1_1:60772006-60772025 Msa0033300:intron 45.0%
!! CCAAAATGGGTTTTCTCTGG+GGG - chr1_1:60772159-60772178 None:intergenic 45.0%
!! CCACCAAAATGGGTTTTCTC+TGG - chr1_1:60772162-60772181 None:intergenic 45.0%
! CCAGAGAAAACCCATTTTGG+TGG + chr1_1:60772159-60772178 Msa0033300:CDS 45.0%
TTCATGGCACCTTTCAGGAA+AGG - chr1_1:60772234-60772253 None:intergenic 45.0%
ATGCCAATCACCACGTTTCA+TGG - chr1_1:60772250-60772269 None:intergenic 45.0%
! GGACGACCATCAGATACTTT+TGG - chr1_1:60772390-60772409 None:intergenic 45.0%
CATGATTTCCCTGTCTTTGC+AGG - chr1_1:60772454-60772473 None:intergenic 45.0%
CTAACAACTTATGTGGGTCG+TGG - chr1_1:60772479-60772498 None:intergenic 45.0%
AGGTTGCTTAATTGCTGGAG+TGG + chr1_1:60772500-60772519 Msa0033300:CDS 45.0%
GGTTGCTTAATTGCTGGAGT+GGG + chr1_1:60772501-60772520 Msa0033300:CDS 45.0%
GTTCATATCCACTATGGTGC+CGG + chr1_1:60772663-60772682 Msa0033300:CDS 45.0%
CTCGCCACAAATATAAGCTC+CGG - chr1_1:60772685-60772704 None:intergenic 45.0%
CTCTCTTGGAAAGCCTTGAA+GGG + chr1_1:60772712-60772731 Msa0033300:CDS 45.0%
GAAAGCCTTGAAGGGAAACA+AGG + chr1_1:60772720-60772739 Msa0033300:CDS 45.0%
!! CATACAATCCTGCATTGGCT+GGG - chr1_1:60772770-60772789 None:intergenic 45.0%
CACTGTCACGAATGTGGAAA+CGG + chr1_1:60772800-60772819 Msa0033300:CDS 45.0%
!!! TCTCCAACCATTTTAAGGCG+TGG + chr1_1:60772831-60772850 Msa0033300:CDS 45.0%
!!! CTCCAACCATTTTAAGGCGT+GGG + chr1_1:60772832-60772851 Msa0033300:CDS 45.0%
CCAAAACTGGCAAACCATTC+TGG - chr1_1:60772858-60772877 None:intergenic 45.0%
!! CCAGAATGGTTTGCCAGTTT+TGG + chr1_1:60772855-60772874 Msa0033300:CDS 45.0%
TTTGGTAGGAAGAACAACGC+TGG + chr1_1:60772873-60772892 Msa0033300:CDS 45.0%
TTGGTAGGAAGAACAACGCT+GGG + chr1_1:60772874-60772893 Msa0033300:CDS 45.0%
ATTTCCTCCTCAACAGTGCA+AGG - chr1_1:60772936-60772955 None:intergenic 45.0%
GGAAATGAGTATGCCACTGA+AGG + chr1_1:60772950-60772969 Msa0033300:CDS 45.0%
!! GAATTGATTGAGAGGCACTG+TGG + chr1_1:60772972-60772991 Msa0033300:CDS 45.0%
ATGATGCGTTAAAGGCTGTC+GGG + chr1_1:60773096-60773115 Msa0033300:CDS 45.0%
ATGTTGTGGATGCCATTGCA+AGG + chr1_1:60773165-60773184 Msa0033300:CDS 45.0%
!! AGGATGGCTTTGGATGATCA+TGG + chr1_1:60773247-60773266 Msa0033300:CDS 45.0%
AGGGACTTATCAGGCATTTC+AGG + chr1_1:60773387-60773406 Msa0033300:CDS 45.0%
AGCCATATCACATCCAATGC+AGG + chr1_1:60773806-60773825 Msa0033300:intron 45.0%
GTCCTGCATTGGATGTGATA+TGG - chr1_1:60773811-60773830 None:intergenic 45.0%
GTCATGAGGGATGGTTCATT+AGG - chr1_1:60773905-60773924 None:intergenic 45.0%
CTACTCAGGTTTGTGTGGTT+GGG - chr1_1:60774007-60774026 None:intergenic 45.0%
ACTACTCAGGTTTGTGTGGT+TGG - chr1_1:60774008-60774027 None:intergenic 45.0%
! CAAACCTGAGTAGTAATGGG+AGG + chr1_1:60774014-60774033 Msa0033300:intron 45.0%
! AACCTGAGTAGTAATGGGAG+GGG + chr1_1:60774016-60774035 Msa0033300:intron 45.0%
! CAAACCCAAGTAGTAATGGG+AGG + chr1_1:60774157-60774176 Msa0033300:intron 45.0%
GCATTCCTCCCATTACTACT+TGG - chr1_1:60774165-60774184 None:intergenic 45.0%
AGGCCATTTCACATCTAACC+TGG + chr1_1:60774207-60774226 Msa0033300:intron 45.0%
GGCCATTTCACATCTAACCT+GGG + chr1_1:60774208-60774227 Msa0033300:intron 45.0%
GTCCCAGGTTAGATGTGAAA+TGG - chr1_1:60774213-60774232 None:intergenic 45.0%
! AAAGAAATGTGTTGCTGCCC+AGG - chr1_1:60774391-60774410 None:intergenic 45.0%
! TCATATATGGCTGGCTGAAC+TGG + chr1_1:60774457-60774476 Msa0033300:intron 45.0%
! CATATATGGCTGGCTGAACT+GGG + chr1_1:60774458-60774477 Msa0033300:intron 45.0%
TCTGTGCCAGAGTTTATCAC+GGG + chr1_1:60774974-60774993 Msa0033300:intron 45.0%
! ATCGGGGTCCTTTAAGTTTG+AGG + chr1_1:60775073-60775092 Msa0033300:intron 45.0%
GACAATGAGAGGGTTAGAGT+TGG + chr1_1:60775402-60775421 Msa0033300:intron 45.0%
! GTTAGAGTTGGTTGCAAGGA+TGG + chr1_1:60775414-60775433 Msa0033300:intron 45.0%
GTTGCAAGGATGGATGTTCT+TGG + chr1_1:60775424-60775443 Msa0033300:intron 45.0%
TTTGGAAAGATAGGTGGCTC+AGG + chr1_1:60775987-60776006 Msa0033300:three_prime_UTR 45.0%
TATGCCGTAGCAATTATGGC+TGG + chr1_1:60776044-60776063 Msa0033300:three_prime_UTR 45.0%
TACCAGAGAATTATCTGGGC+CGG + chr1_1:60776071-60776090 Msa0033300:three_prime_UTR 45.0%
TGATGAGGGATAATGTCCAC+TGG + chr1_1:60776216-60776235 Msa0033300:three_prime_UTR 45.0%
TCAAAGCCATTGCTATCCAG+TGG - chr1_1:60776235-60776254 None:intergenic 45.0%
!! CTAAATAATAAAATAATAAA+AGG - chr1_1:60774791-60774810 None:intergenic 5.0%
!! AAATGGGTTTTCTCTGGGGG+TGG - chr1_1:60772156-60772175 None:intergenic 50.0%
! CCCCCAGAGAAAACCCATTT+TGG + chr1_1:60772156-60772175 Msa0033300:CDS 50.0%
GTGGACTTAAGGATGAGGAC+AGG + chr1_1:60772178-60772197 Msa0033300:CDS 50.0%
ATCGTGCAGCCCATACAAGT+TGG - chr1_1:60772211-60772230 None:intergenic 50.0%
CTGCACGATCCTTTCCTGAA+AGG + chr1_1:60772222-60772241 Msa0033300:CDS 50.0%
CACGTTTCATGGCACCTTTC+AGG - chr1_1:60772239-60772258 None:intergenic 50.0%
!! CTGAAAGGTGCCATGAAACG+TGG + chr1_1:60772237-60772256 Msa0033300:CDS 50.0%
GTGCCATGAAACGTGGTGAT+TGG + chr1_1:60772244-60772263 Msa0033300:CDS 50.0%
ATGAAGAAGTCTGGTCTCCG+CGG + chr1_1:60772318-60772337 Msa0033300:CDS 50.0%
AACCTGGTACCTGCAAAGAC+AGG + chr1_1:60772442-60772461 Msa0033300:CDS 50.0%
ACCTGGTACCTGCAAAGACA+GGG + chr1_1:60772443-60772462 Msa0033300:CDS 50.0%
AGGAAAGAGGCTTATGCAGC+TGG + chr1_1:60772597-60772616 Msa0033300:CDS 50.0%
GGAAAGAGGCTTATGCAGCT+GGG + chr1_1:60772598-60772617 Msa0033300:CDS 50.0%
! GCTTATGCAGCTGGGCTTTT+GGG + chr1_1:60772606-60772625 Msa0033300:CDS 50.0%
GGGTAAGAATGCTTGTGGCT+CGG + chr1_1:60772626-60772645 Msa0033300:CDS 50.0%
GGTAAGAATGCTTGTGGCTC+GGG + chr1_1:60772627-60772646 Msa0033300:CDS 50.0%
TATAAGCTCCGGCACCATAG+TGG - chr1_1:60772674-60772693 None:intergenic 50.0%
! GGTGCCGGAGCTTATATTTG+TGG + chr1_1:60772678-60772697 Msa0033300:CDS 50.0%
CGGAGCTTATATTTGTGGCG+AGG + chr1_1:60772683-60772702 Msa0033300:CDS 50.0%
GCTCTCTTGGAAAGCCTTGA+AGG + chr1_1:60772711-60772730 Msa0033300:CDS 50.0%
GGGAAAGGAGGCTTCAATCT+TGG - chr1_1:60772750-60772769 None:intergenic 50.0%
!! AATCCTGCATTGGCTGGGAA+AGG - chr1_1:60772765-60772784 None:intergenic 50.0%
! CCATACAATCCTGCATTGGC+TGG - chr1_1:60772771-60772790 None:intergenic 50.0%
CCAGCCAATGCAGGATTGTA+TGG + chr1_1:60772768-60772787 Msa0033300:CDS 50.0%
TCCACATTCGTGACAGTGGT+GGG - chr1_1:60772798-60772817 None:intergenic 50.0%
TTCCACATTCGTGACAGTGG+TGG - chr1_1:60772799-60772818 None:intergenic 50.0%
CGTTTCCACATTCGTGACAG+TGG - chr1_1:60772802-60772821 None:intergenic 50.0%
TTCTGGCCCACGCCTTAAAA+TGG - chr1_1:60772841-60772860 None:intergenic 50.0%
!!! TTTTAAGGCGTGGGCCAGAA+TGG + chr1_1:60772841-60772860 Msa0033300:CDS 50.0%
GAACAAGCCTTGCACTGTTG+AGG + chr1_1:60772926-60772945 Msa0033300:CDS 50.0%
!! TTGATTGAGAGGCACTGTGG+AGG + chr1_1:60772975-60772994 Msa0033300:CDS 50.0%
!! TGGAGGTGTTAGAGGAGGAT+GGG + chr1_1:60772992-60773011 Msa0033300:CDS 50.0%
GACTGCAGCTGTGATTGTGA+TGG + chr1_1:60773130-60773149 Msa0033300:CDS 50.0%
GAAGTACGAGAGCCTTGCAA+TGG - chr1_1:60773180-60773199 None:intergenic 50.0%
AACAATCACACAAAGCGGGC+TGG + chr1_1:60773744-60773763 Msa0033300:intron 50.0%
ATGCGCAGACATGGTCATGA+GGG - chr1_1:60773849-60773868 None:intergenic 50.0%
ATGCGCAGACATGGTCATGA+GGG - chr1_1:60773849-60773868 None:intergenic 50.0%
! GCTAACTTGCGTGATCCATG+CGG + chr1_1:60774076-60774095 Msa0033300:intron 50.0%
TCCATTTGGTCGCCCGTTAT+CGG - chr1_1:60774103-60774122 None:intergenic 50.0%
! ACGGGCGACCAAATGGATTT+AGG + chr1_1:60774106-60774125 Msa0033300:intron 50.0%
! GAGGGTTAGAGTTGGTTGCA+AGG + chr1_1:60775410-60775429 Msa0033300:intron 50.0%
ATAGGTGGCTCAGGTTCCTT+TGG + chr1_1:60775996-60776015 Msa0033300:three_prime_UTR 50.0%
TACCGGCCCAGATAATTCTC+TGG - chr1_1:60776076-60776095 None:intergenic 50.0%
TGAAGAAGTCTGGTCTCCGC+GGG + chr1_1:60772319-60772338 Msa0033300:CDS 55.0%
TCCCTGTCTTTGCAGGTACC+AGG - chr1_1:60772447-60772466 None:intergenic 55.0%
! GGCTTATGCAGCTGGGCTTT+TGG + chr1_1:60772605-60772624 Msa0033300:CDS 55.0%
TGGCGAGGAAACTGCTCTCT+TGG + chr1_1:60772698-60772717 Msa0033300:CDS 55.0%
TCCCACCACTGTCACGAATG+TGG + chr1_1:60772794-60772813 Msa0033300:CDS 55.0%
GGCCCACGCCTTAAAATGGT+TGG - chr1_1:60772837-60772856 None:intergenic 55.0%
CAAGCCTTGCACTGTTGAGG+AGG + chr1_1:60772929-60772948 Msa0033300:CDS 55.0%
!! AGGCACTGTGGAGGTGTTAG+AGG + chr1_1:60772984-60773003 Msa0033300:CDS 55.0%
!! CACTGTGGAGGTGTTAGAGG+AGG + chr1_1:60772987-60773006 Msa0033300:CDS 55.0%
!! GTGGAGGTGTTAGAGGAGGA+TGG + chr1_1:60772991-60773010 Msa0033300:CDS 55.0%
AGTGGAACAGACGATCCTCC+TGG - chr1_1:60773038-60773057 None:intergenic 55.0%
CGTTAAAGGCTGTCGGGTCA+GGG + chr1_1:60773102-60773121 Msa0033300:CDS 55.0%
AGGGCACACAATCTGTGCCT+TGG + chr1_1:60773340-60773359 Msa0033300:CDS 55.0%
GGGCACACAATCTGTGCCTT+GGG + chr1_1:60773341-60773360 Msa0033300:CDS 55.0%
TGCCTGATAAGTCCCTGCAC+TGG - chr1_1:60773383-60773402 None:intergenic 55.0%
CTTGGTCAAGGCCTAACCAG+TGG - chr1_1:60773465-60773484 None:intergenic 55.0%
! CACTGGTTAGGCCTTGACCA+AGG + chr1_1:60773463-60773482 Msa0033300:exon 55.0%
!! TCACACAAAGCGGGCTGGTA+AGG + chr1_1:60773749-60773768 Msa0033300:intron 55.0%
GCAGACATGGTCATGAGGGA+TGG - chr1_1:60773845-60773864 None:intergenic 55.0%
GATGCGCAGACATGGTCATG+AGG - chr1_1:60773850-60773869 None:intergenic 55.0%
CATGACCATGTCTGCGCATC+CGG + chr1_1:60773850-60773869 Msa0033300:intron 55.0%
GGTCACATTATCGGGCCACA+CGG - chr1_1:60773884-60773903 None:intergenic 55.0%
GCAGACATGGTCATGAGGGA+TGG - chr1_1:60773845-60773864 None:intergenic 55.0%
GATGCGCAGACATGGTCATG+AGG - chr1_1:60773850-60773869 None:intergenic 55.0%
CATGACCATGTCTGCGCATC+CGG + chr1_1:60773850-60773869 Msa0033300:intron 55.0%
GGTCACATTATCGGGCCACA+CGG - chr1_1:60773884-60773903 None:intergenic 55.0%
CACCCCTCCCATTACTACTC+AGG - chr1_1:60774021-60774040 None:intergenic 55.0%
TGATCCATGCGGCCCGATAA+CGG + chr1_1:60774087-60774106 Msa0033300:intron 55.0%
CCATTTGGTCGCCCGTTATC+GGG - chr1_1:60774102-60774121 None:intergenic 55.0%
TGTTGAGACTCGAGAGTCCC+AGG - chr1_1:60774228-60774247 None:intergenic 55.0%
! GTGTAGGGGTGTGACTGTAC+TGG + chr1_1:60775929-60775948 Msa0033300:intron 55.0%
! GGGTGTGACTGTACTGGTGA+TGG + chr1_1:60775935-60775954 Msa0033300:three_prime_UTR 55.0%
!! GTTTTCTCTGGGGGTGGAGG+TGG - chr1_1:60772150-60772169 None:intergenic 60.0%
!! TGGGTTTTCTCTGGGGGTGG+AGG - chr1_1:60772153-60772172 None:intergenic 60.0%
!!! GGTGGTGCCGGTTTTCCTTC+TGG + chr1_1:60772345-60772364 Msa0033300:CDS 60.0%
!! CCTGCATTGGCTGGGAAAGG+AGG - chr1_1:60772762-60772781 None:intergenic 60.0%
CCTCCTTTCCCAGCCAATGC+AGG + chr1_1:60772759-60772778 Msa0033300:CDS 60.0%
GCGTTAAAGGCTGTCGGGTC+AGG + chr1_1:60773101-60773120 Msa0033300:CDS 60.0%
AAAGGCTGTCGGGTCAGGGT+TGG + chr1_1:60773106-60773125 Msa0033300:CDS 60.0%
AAGGCTGTCGGGTCAGGGTT+GGG + chr1_1:60773107-60773126 Msa0033300:CDS 60.0%
TGGGCAGTGCACACCATGCA+GGG + chr1_1:60773217-60773236 Msa0033300:CDS 60.0%
CAGTGCACACCATGCAGGGA+GGG + chr1_1:60773221-60773240 Msa0033300:CDS 60.0%
ACACCATGCAGGGAGGGAAC+AGG + chr1_1:60773227-60773246 Msa0033300:CDS 60.0%
CATCCTGTTCCCTCCCTGCA+TGG - chr1_1:60773233-60773252 None:intergenic 60.0%
CATGCAGGGAGGGAACAGGA+TGG + chr1_1:60773231-60773250 Msa0033300:CDS 60.0%
GGGAGGGAACAGGATGGCTT+TGG + chr1_1:60773237-60773256 Msa0033300:CDS 60.0%
GGCCAGTGCAGGGACTTATC+AGG + chr1_1:60773378-60773397 Msa0033300:CDS 60.0%
TCAGGCCCGAGCTTGAGAGA+AGG + chr1_1:60773405-60773424 Msa0033300:CDS 60.0%
TGCACAGAGGGAGTTGCTGC+AGG + chr1_1:60773439-60773458 Msa0033300:CDS 60.0%
! GTTGCTGCAGGCCACTGGTT+AGG + chr1_1:60773451-60773470 Msa0033300:CDS 60.0%
GATCCATGCGGCCCGATAAC+GGG + chr1_1:60774088-60774107 Msa0033300:intron 60.0%
!! CCCGATAACGGGCGACCAAA+TGG + chr1_1:60774099-60774118 Msa0033300:intron 60.0%
! TTCTCTGGGGGTGGAGGTGG+TGG - chr1_1:60772147-60772166 None:intergenic 65.0%
AGGCTGTCGGGTCAGGGTTG+GGG + chr1_1:60773108-60773127 Msa0033300:CDS 65.0%
GTGGGCAGTGCACACCATGC+AGG + chr1_1:60773216-60773235 Msa0033300:CDS 65.0%
GCAGTGCACACCATGCAGGG+AGG + chr1_1:60773220-60773239 Msa0033300:CDS 65.0%
CCATGCAGCAGCGTCACCCA+AGG - chr1_1:60773360-60773379 None:intergenic 65.0%
CCTTGGGTGACGCTGCTGCA+TGG + chr1_1:60773357-60773376 Msa0033300:CDS 65.0%
GCTGCTGCATGGCCAGTGCA+GGG + chr1_1:60773368-60773387 Msa0033300:CDS 65.0%
AGGGAGTTGCTGCAGGCCAC+TGG + chr1_1:60773446-60773465 Msa0033300:CDS 65.0%
ACGCTCCGGATGCGCAGACA+TGG - chr1_1:60773858-60773877 None:intergenic 65.0%
CATCCGGAGCGTGATCCGTG+TGG + chr1_1:60773866-60773885 Msa0033300:intron 65.0%
ACGCTCCGGATGCGCAGACA+TGG - chr1_1:60773858-60773877 None:intergenic 65.0%
CATCCGGAGCGTGATCCGTG+TGG + chr1_1:60773866-60773885 Msa0033300:intron 65.0%
!! GGAGGTGGTGGTGGAGGCTG+CGG - chr1_1:60772135-60772154 None:intergenic 70.0%
! TCTGGGGGTGGAGGTGGTGG+TGG - chr1_1:60772144-60772163 None:intergenic 70.0%
AAGTCTGGTCTCCGCGGGCG+TGG + chr1_1:60772324-60772343 Msa0033300:CDS 70.0%
CGCTGCTGCATGGCCAGTGC+AGG + chr1_1:60773367-60773386 Msa0033300:CDS 70.0%
GGGCCACACGGATCACGCTC+CGG - chr1_1:60773872-60773891 None:intergenic 70.0%
GGGCCACACGGATCACGCTC+CGG - chr1_1:60773872-60773891 None:intergenic 70.0%
TCGCCCGTTATCGGGCCGCA+TGG - chr1_1:60774094-60774113 None:intergenic 70.0%
!! GGGGGTGGAGGTGGTGGTGG+AGG - chr1_1:60772141-60772160 None:intergenic 75.0%
TCTGGTCTCCGCGGGCGTGG+TGG + chr1_1:60772327-60772346 Msa0033300:CDS 75.0%
AACCGGCACCACCACGCCCG+CGG - chr1_1:60772338-60772357 None:intergenic 75.0%
!! CTCCGCGGGCGTGGTGGTGC+CGG + chr1_1:60772333-60772352 Msa0033300:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60771198 60776340 60771198 ID=Msa0033300;Name=Msa0033300
chr1_1 mRNA 60771198 60776340 60771198 ID=Msa0033300-mRNA-1;Parent=Msa0033300;Name=Msa0033300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.66|0.66|0.5|0.33|3|418|488
chr1_1 exon 60771198 60771201 60771198 ID=Msa0033300-mRNA-1:exon:19021;Parent=Msa0033300-mRNA-1
chr1_1 exon 60772010 60773484 60772010 ID=Msa0033300-mRNA-1:exon:19022;Parent=Msa0033300-mRNA-1
chr1_1 exon 60775935 60776340 60775935 ID=Msa0033300-mRNA-1:exon:19023;Parent=Msa0033300-mRNA-1
chr1_1 CDS 60771198 60771201 60771198 ID=Msa0033300-mRNA-1:cds;Parent=Msa0033300-mRNA-1
chr1_1 CDS 60772010 60773472 60772010 ID=Msa0033300-mRNA-1:cds;Parent=Msa0033300-mRNA-1
chr1_1 three_prime_UTR 60773473 60773484 60773473 ID=Msa0033300-mRNA-1:three_prime_utr;Parent=Msa0033300-mRNA-1
chr1_1 three_prime_UTR 60775935 60776340 60775935 ID=Msa0033300-mRNA-1:three_prime_utr;Parent=Msa0033300-mRNA-1
Gene Sequence

>Msa0033300

ATGGGTTGGATAACCATGAGGGGCATTCTTTCTTTAAAGAGGGCAGTGTTGGTTCGACAACAAAGTGAAAAGTTGGGTCTTGGTGTTAGATTATTTAGCACTCAGGGTGCTTCAACTGCAAGTACTCCGCAGCCTCCACCACCACCTCCACCCCCAGAGAAAACCCATTTTGGTGGACTTAAGGATGAGGACAGGATTTTTACCAACTTGTATGGGCTGCACGATCCTTTCCTGAAAGGTGCCATGAAACGTGGTGATTGGCATCGCACTAAAGATTTGGTAATTAAGGGTACTGATTGGATCGTTAATGAAATGAAGAAGTCTGGTCTCCGCGGGCGTGGTGGTGCCGGTTTTCCTTCTGGCCTTAAATGGTCATTTATGCCAAAAGTATCTGATGGTCGTCCTTCTTACCTTGTCGTTAATGCTGATGAAAGTGAACCTGGTACCTGCAAAGACAGGGAAATCATGCGCCACGACCCACATAAGTTGTTAGAAGGTTGCTTAATTGCTGGAGTGGGAATGAGAGCTACTGCTGCTTACATTTACATCAGGGGTGAATATGTGAATGAACGTTTAAATCTTGAAAAGGCTAGGAAAGAGGCTTATGCAGCTGGGCTTTTGGGTAAGAATGCTTGTGGCTCGGGCTATGATTTTGATGTTCATATCCACTATGGTGCCGGAGCTTATATTTGTGGCGAGGAAACTGCTCTCTTGGAAAGCCTTGAAGGGAAACAAGGTAAACCAAGATTGAAGCCTCCTTTCCCAGCCAATGCAGGATTGTATGGTTGTCCCACCACTGTCACGAATGTGGAAACGGTAGCTGTTTCTCCAACCATTTTAAGGCGTGGGCCAGAATGGTTTGCCAGTTTTGGTAGGAAGAACAACGCTGGGACAAAGTTGTATTGTGTGTCAGGACATGTGAACAAGCCTTGCACTGTTGAGGAGGAAATGAGTATGCCACTGAAGGAATTGATTGAGAGGCACTGTGGAGGTGTTAGAGGAGGATGGGACAATTTACTTGCTATTATTCCAGGAGGATCGTCTGTTCCACTGATTCCAAAACATGTATGTGACGATGTTCTGATGGATTATGATGCGTTAAAGGCTGTCGGGTCAGGGTTGGGGACTGCAGCTGTGATTGTGATGGATAAGTCTACTGATGTTGTGGATGCCATTGCAAGGCTCTCGTACTTCTACAAGCATGAAAGCTGTGGGCAGTGCACACCATGCAGGGAGGGAACAGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTTGGTAATGCCAAGCTAGAAGAAATTGATATGCTTCAGGAGGTGACTAAGCAAATTGAAGGGCACACAATCTGTGCCTTGGGTGACGCTGCTGCATGGCCAGTGCAGGGACTTATCAGGCATTTCAGGCCCGAGCTTGAGAGAAGGATTAAAGAGAATGCACAGAGGGAGTTGCTGCAGGCCACTGGTTAG
Protein sequence

>Msa0033300

MGWITMRGILSLKRAVLVRQQSEKLGLGVRLFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVIKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAAYIYIRGEYVNERLNLEKARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLYCVSGHVNKPCTVEEEMSMPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKHVCDDVLMDYDALKAVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKENAQRELLQATG*