Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033380 | AES60780.1 | 99.197 | 249 | 2 | 0 | 37 | 285 | 4 | 252 | 9.90e-180 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033380 | sp|Q9LFF9|IPYR4_ARATH | 84.722 | 216 | 33 | 0 | 70 | 285 | 1 | 216 | 5.17e-138 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033380 | Msa0122720 | 0.935316 | 1.027513e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033380 | MtrunA17_Chr1g0182331 | 100.000 | 216 | 0 | 0 | 70 | 285 | 1 | 216 | 7.72e-162 | 448 |
| Msa0033380 | MtrunA17_Chr1g0200691 | 69.534 | 279 | 40 | 3 | 33 | 272 | 13 | 285 | 6.07e-133 | 378 |
| Msa0033380 | MtrunA17_Chr8g0345781 | 79.263 | 217 | 44 | 1 | 70 | 285 | 1 | 217 | 2.38e-128 | 363 |
| Msa0033380 | MtrunA17_Chr5g0404551 | 82.741 | 197 | 34 | 0 | 89 | 285 | 17 | 213 | 3.69e-125 | 355 |
| Msa0033380 | MtrunA17_Chr8g0372981 | 80.676 | 207 | 37 | 2 | 82 | 285 | 20 | 226 | 5.67e-123 | 350 |
| Msa0033380 | MtrunA17_Chr7g0276441 | 81.034 | 174 | 32 | 1 | 112 | 285 | 21 | 193 | 9.90e-103 | 298 |
| Msa0033380 | MtrunA17_Chr1g0210921 | 49.412 | 85 | 38 | 3 | 204 | 283 | 12 | 96 | 2.42e-18 | 79.0 |
| Msa0033380 | MtrunA17_Chr2g0280151 | 34.356 | 163 | 80 | 6 | 108 | 246 | 82 | 241 | 1.60e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033380 | AT3G53620.1 | 84.722 | 216 | 33 | 0 | 70 | 285 | 1 | 216 | 5.26e-139 | 390 |
| Msa0033380 | AT1G01050.1 | 86.802 | 197 | 26 | 0 | 89 | 285 | 16 | 212 | 2.88e-129 | 366 |
| Msa0033380 | AT1G01050.2 | 86.802 | 197 | 26 | 0 | 89 | 285 | 16 | 212 | 2.88e-129 | 366 |
| Msa0033380 | AT2G46860.1 | 84.264 | 197 | 31 | 0 | 89 | 285 | 20 | 216 | 4.11e-127 | 360 |
| Msa0033380 | AT4G01480.1 | 80.097 | 206 | 40 | 1 | 81 | 285 | 11 | 216 | 1.09e-122 | 349 |
| Msa0033380 | AT4G01480.2 | 80.097 | 206 | 40 | 1 | 81 | 285 | 11 | 216 | 1.09e-122 | 349 |
| Msa0033380 | AT2G18230.1 | 79.487 | 195 | 40 | 0 | 91 | 285 | 24 | 218 | 3.79e-116 | 333 |
| Msa0033380 | AT5G09650.1 | 34.161 | 161 | 83 | 5 | 108 | 246 | 92 | 251 | 1.63e-15 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAACTTTGTTAAATTT+TGG | 0.082092 | 1_1:+60876534 | Msa0033380:three_prime_UTR |
| CAAGAAAACTGGACTTATTA+AGG | 0.226202 | 1_1:+60875041 | Msa0033380:CDS |
| TCGCGGTGGGAATCTTGTTT+GGG | 0.281569 | 1_1:-60873919 | None:intergenic |
| TTGAAGATCTTGGGAGCTTC+AGG | 0.285820 | 1_1:-60874171 | None:intergenic |
| TTCGCGGTGGGAATCTTGTT+TGG | 0.304545 | 1_1:-60873920 | None:intergenic |
| TTTCTTCGTGCCAAAGCTAT+TGG | 0.320096 | 1_1:+60875873 | Msa0033380:CDS |
| ACTGTTAATGTTCAGGCTAA+TGG | 0.334959 | 1_1:+60873283 | Msa0033380:intron |
| CCATCCTTCCATTCATCGCC+TGG | 0.349974 | 1_1:-60870391 | None:intergenic |
| ATCTTGTTTGGGGTCTCAAT+TGG | 0.355560 | 1_1:-60873908 | None:intergenic |
| TATGAACTTGACAAGAAAAC+TGG | 0.356052 | 1_1:+60875030 | Msa0033380:CDS |
| CAACAGGAGCCAGTTCTTCC+TGG | 0.361097 | 1_1:+60875846 | Msa0033380:intron |
| GCTTACACAATTGAAGATCT+TGG | 0.376721 | 1_1:-60874181 | None:intergenic |
| ATAATAACCAAGACATCAAT+GGG | 0.410303 | 1_1:-60875225 | None:intergenic |
| TTGTTTGGGGTCTCAATTGG+TGG | 0.420292 | 1_1:-60873905 | None:intergenic |
| CATAATAACCAAGACATCAA+TGG | 0.424808 | 1_1:-60875226 | None:intergenic |
| TGATGTCTTGGTTATTATGC+AGG | 0.426309 | 1_1:+60875230 | Msa0033380:CDS |
| AGAAAGCAGCCAGGAAGAAC+TGG | 0.439777 | 1_1:-60875855 | None:intergenic |
| CTTACACAATTGAAGATCTT+GGG | 0.443122 | 1_1:-60874180 | None:intergenic |
| GACAAATGTACATGCTATAT+AGG | 0.444522 | 1_1:-60876473 | None:intergenic |
| CCATGGCATGATCTTGAGAT+AGG | 0.448676 | 1_1:+60874013 | Msa0033380:CDS |
| GGCGGTAGTATTGATGCATA+TGG | 0.450578 | 1_1:+60876360 | Msa0033380:exon |
| GTTGTGTATCCTCACAACTA+TGG | 0.456712 | 1_1:+60875168 | Msa0033380:CDS |
| CAGGCTAATGGCTTCTGAAT+CGG | 0.459794 | 1_1:+60873295 | Msa0033380:intron |
| AGGAGAACCCAGGCGATGAA+TGG | 0.465067 | 1_1:+60870383 | Msa0033380:CDS |
| TCAGATACCTGATCAATCAT+AGG | 0.466855 | 1_1:-60875903 | None:intergenic |
| ACTACGTTGTGGAGAGTTTG+AGG | 0.477682 | 1_1:+60876339 | Msa0033380:CDS |
| ACGATTTCAGAAACTGCAAT+TGG | 0.481587 | 1_1:-60873437 | None:intergenic |
| CACAACGTAGTCTGCATACA+AGG | 0.481707 | 1_1:-60876327 | None:intergenic |
| TCTCATGCCTATGATTGATC+AGG | 0.492132 | 1_1:+60875896 | Msa0033380:CDS |
| CGCGGTGGGAATCTTGTTTG+GGG | 0.501491 | 1_1:-60873918 | None:intergenic |
| AGGCATGAGACCAATAGCTT+TGG | 0.503559 | 1_1:-60875883 | None:intergenic |
| TCTGACAATTCATCAAGTAC+TGG | 0.506196 | 1_1:-60876656 | None:intergenic |
| ACCATCCTCACAAATAGTGC+GGG | 0.507168 | 1_1:-60875199 | None:intergenic |
| AATATGCATGTGTTGTCAGC+TGG | 0.509898 | 1_1:-60876498 | None:intergenic |
| CCCCGCACTATTTGTGAGGA+TGG | 0.512555 | 1_1:+60875198 | Msa0033380:CDS |
| TGCTATATAGGATAGGATTA+CGG | 0.512938 | 1_1:-60876461 | None:intergenic |
| GAAAGGATCCTCTCATTAAG+AGG | 0.518691 | 1_1:-60873959 | None:intergenic |
| TAGGCATTACAATGATATCA+AGG | 0.527302 | 1_1:+60876052 | Msa0033380:CDS |
| CCAGGCGATGAATGGAAGGA+TGG | 0.530981 | 1_1:+60870391 | Msa0033380:CDS |
| CATCCTTCCATTCATCGCCT+GGG | 0.532640 | 1_1:-60870390 | None:intergenic |
| TAGGTGGTTGAAATTGGGAA+AGG | 0.533306 | 1_1:+60874994 | Msa0033380:intron |
| TGGTGACCCCATTGATGTCT+TGG | 0.533354 | 1_1:+60875218 | Msa0033380:CDS |
| AAGTGGTGTTAGAGAGATGA+AGG | 0.534145 | 1_1:+60870342 | Msa0033380:CDS |
| CTCATTAAGAGGTGGTGGTG+AGG | 0.544313 | 1_1:-60873948 | None:intergenic |
| GGAATGCTCAATAGCTTCAA+AGG | 0.545999 | 1_1:-60876180 | None:intergenic |
| TCCTTTCATCATTGACTAGG+AGG | 0.547208 | 1_1:+60873975 | Msa0033380:CDS |
| ATCCTCTCATTAAGAGGTGG+TGG | 0.548349 | 1_1:-60873953 | None:intergenic |
| AGAGAGTGAGATATGGCAAG+TGG | 0.560839 | 1_1:+60870325 | None:intergenic |
| ATTTCAGAAACTGCAATTGG+TGG | 0.561215 | 1_1:-60873434 | None:intergenic |
| GGATCCTTTCATCATTGACT+AGG | 0.568164 | 1_1:+60873972 | Msa0033380:CDS |
| GAACCCAGGCGATGAATGGA+AGG | 0.569349 | 1_1:+60870387 | Msa0033380:CDS |
| GATACACAACTGATGAGTAA+AGG | 0.570339 | 1_1:-60875155 | None:intergenic |
| CAAAGGCAGATGAGGAAGGA+AGG | 0.576115 | 1_1:-60876163 | None:intergenic |
| GGTCTGTTGCTGCACACCCA+TGG | 0.580873 | 1_1:+60873996 | Msa0033380:CDS |
| GTGCTGATGATCCTGAGTAT+AGG | 0.582724 | 1_1:+60876033 | Msa0033380:CDS |
| TTCATCAAGTACTGGATGAG+AGG | 0.584410 | 1_1:-60876648 | None:intergenic |
| GCGGTAGTATTGATGCATAT+GGG | 0.588298 | 1_1:+60876361 | Msa0033380:exon |
| ACCTCCTAGTCAATGATGAA+AGG | 0.589112 | 1_1:-60873976 | None:intergenic |
| ATGTACATGCTATATAGGAT+AGG | 0.592686 | 1_1:-60876468 | None:intergenic |
| TGGTGAGGTGTAATTCGCGG+TGG | 0.595709 | 1_1:-60873933 | None:intergenic |
| AATAGCTTCAAAGGCAGATG+AGG | 0.596063 | 1_1:-60876171 | None:intergenic |
| TGAAATTGGGAAAGGAAACA+AGG | 0.596735 | 1_1:+60875002 | Msa0033380:CDS |
| ATATGCATGTGTTGTCAGCT+GGG | 0.599753 | 1_1:-60876497 | None:intergenic |
| CCTATCTCAAGATCATGCCA+TGG | 0.600294 | 1_1:-60874013 | None:intergenic |
| CTATCTCAAGATCATGCCAT+GGG | 0.603760 | 1_1:-60874012 | None:intergenic |
| TGGTGGTGAGGTGTAATTCG+CGG | 0.604155 | 1_1:-60873936 | None:intergenic |
| GGTGAGGTGTAATTCGCGGT+GGG | 0.605265 | 1_1:-60873932 | None:intergenic |
| GCTTCAAAGGCAGATGAGGA+AGG | 0.607869 | 1_1:-60876167 | None:intergenic |
| CACCATCCTCACAAATAGTG+CGG | 0.608255 | 1_1:-60875200 | None:intergenic |
| CAGGCGATGAATGGAAGGAT+GGG | 0.609519 | 1_1:+60870392 | Msa0033380:CDS |
| ATTTCAGCTAAACGATGTGG+AGG | 0.614529 | 1_1:-60876080 | None:intergenic |
| TTGGCACGAAGAAAGCAGCC+AGG | 0.615889 | 1_1:-60875864 | None:intergenic |
| CACCACCACCTCTTAATGAG+AGG | 0.621436 | 1_1:+60873951 | Msa0033380:CDS |
| TCATTGTAATGCCTATACTC+AGG | 0.624794 | 1_1:-60876044 | None:intergenic |
| TTACAAGAAGAATGAGAACA+AGG | 0.636721 | 1_1:+60876121 | Msa0033380:CDS |
| AACTCACGGAAGGAGAACCC+AGG | 0.642700 | 1_1:+60870373 | Msa0033380:CDS |
| GGATCAGAGAAACTCACGGA+AGG | 0.648976 | 1_1:+60870363 | Msa0033380:CDS |
| TGAAGGATCAGAGAAACTCA+CGG | 0.649849 | 1_1:+60870359 | Msa0033380:CDS |
| CCATCCTCACAAATAGTGCG+GGG | 0.650576 | 1_1:-60875198 | None:intergenic |
| CGGATTTCAGCTAAACGATG+TGG | 0.654970 | 1_1:-60876083 | None:intergenic |
| AGGATCCTCTCATTAAGAGG+TGG | 0.671103 | 1_1:-60873956 | None:intergenic |
| GGGATAAATCCATAGTTGTG+AGG | 0.674435 | 1_1:-60875177 | None:intergenic |
| CAACTGATGAGTAAAGGACC+CGG | 0.675914 | 1_1:-60875149 | None:intergenic |
| TTTCAGCTAAACGATGTGGA+GGG | 0.687080 | 1_1:-60876079 | None:intergenic |
| CATCCTCACAAATAGTGCGG+GGG | 0.690869 | 1_1:-60875197 | None:intergenic |
| GATGAGAGGAAAGAATCGAG+TGG | 0.700783 | 1_1:-60876634 | None:intergenic |
| TGAATCGGAAACTGTCACTG+TGG | 0.703517 | 1_1:+60873310 | Msa0033380:CDS |
| CTTGTATGCAGACTACGTTG+TGG | 0.725981 | 1_1:+60876328 | Msa0033380:CDS |
| ACGTTGTGGAGAGTTTGAGG+CGG | 0.743485 | 1_1:+60876342 | Msa0033380:CDS |
| TAATAACCAAGACATCAATG+GGG | 0.783648 | 1_1:-60875224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATAGATTTTTTTTAG+AGG | + | chr1_1:60871345-60871364 | Msa0033380:intron | 10.0% |
| !!! | TTATTATGATTATTTTTTTC+AGG | + | chr1_1:60873868-60873887 | Msa0033380:intron | 10.0% |
| !! | TTACTTATAAATTTACCAAA+TGG | - | chr1_1:60870606-60870625 | None:intergenic | 15.0% |
| !! | ATATAAATATAGTAGTATGA+AGG | - | chr1_1:60870760-60870779 | None:intergenic | 15.0% |
| !!! | TTTTAAAAATCTGTAACAAA+CGG | - | chr1_1:60871261-60871280 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTTTTCCTA+CGG | + | chr1_1:60871623-60871642 | Msa0033380:intron | 15.0% |
| !!! | ATTTTTTTTTTTTTTCCTAC+GGG | + | chr1_1:60871624-60871643 | Msa0033380:intron | 15.0% |
| !! | TTTGACTAATAATAAAACAT+AGG | + | chr1_1:60872525-60872544 | Msa0033380:intron | 15.0% |
| !!! | ATTAGTTTAATCTTAAGAAA+TGG | + | chr1_1:60873603-60873622 | Msa0033380:intron | 15.0% |
| !!! | ATTTACTAGTAAGATATTTT+TGG | + | chr1_1:60873634-60873653 | Msa0033380:intron | 15.0% |
| !!! | ATCATAACTTTTTTTTTTCT+TGG | + | chr1_1:60873764-60873783 | Msa0033380:intron | 15.0% |
| !!! | TCATAACTTTTTTTTTTCTT+GGG | + | chr1_1:60873765-60873784 | Msa0033380:intron | 15.0% |
| !!! | ACATAATTTCAATGATATTT+TGG | - | chr1_1:60873817-60873836 | None:intergenic | 15.0% |
| !!! | AATCATCATAAAAGATATTT+TGG | - | chr1_1:60874483-60874502 | None:intergenic | 15.0% |
| !!! | TATGATGATTATTTTTTCTA+TGG | + | chr1_1:60874493-60874512 | Msa0033380:intron | 15.0% |
| !!! | TTGAAATATTGATGAATTTT+AGG | + | chr1_1:60874975-60874994 | Msa0033380:intron | 15.0% |
| !!! | TTTTATTTTTATTGTTGTGA+AGG | + | chr1_1:60876303-60876322 | Msa0033380:intron | 15.0% |
| !!! | AATAAATGACTTGTTATAGT+AGG | - | chr1_1:60870461-60870480 | None:intergenic | 20.0% |
| !!! | TCTTATTAATAGAACTTGTT+TGG | + | chr1_1:60870512-60870531 | Msa0033380:intron | 20.0% |
| !!! | GATTTTAAACAAAATTGTGT+TGG | - | chr1_1:60870846-60870865 | None:intergenic | 20.0% |
| !!! | TTTCATAATCATTTGTTGTT+TGG | - | chr1_1:60871123-60871142 | None:intergenic | 20.0% |
| !! | TTAAAAAAGCTATAACAAAC+GGG | - | chr1_1:60871188-60871207 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGCTATAACAAA+CGG | - | chr1_1:60871189-60871208 | None:intergenic | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | - | chr1_1:60871421-60871440 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | - | chr1_1:60871422-60871441 | None:intergenic | 20.0% |
| !!! | ACAAATAATCTTAGTTTGTT+TGG | - | chr1_1:60871440-60871459 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | + | chr1_1:60871566-60871585 | Msa0033380:intron | 20.0% |
| !! | TTCTATGATTAGATGATTAT+GGG | - | chr1_1:60871593-60871612 | None:intergenic | 20.0% |
| !! | TTTCTATGATTAGATGATTA+TGG | - | chr1_1:60871594-60871613 | None:intergenic | 20.0% |
| !!! | TTTGTAAAACCTATGTTTTT+TGG | - | chr1_1:60872562-60872581 | None:intergenic | 20.0% |
| !! | GAAAACAATATGAAATGAAA+CGG | - | chr1_1:60873034-60873053 | None:intergenic | 20.0% |
| !!! | AATGAAATTTTCTCAAGTAT+TGG | - | chr1_1:60873111-60873130 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTGTGAGATTAA+GGG | + | chr1_1:60873517-60873536 | Msa0033380:intron | 20.0% |
| !! | AAAAAAAAAGTTATGATGCA+TGG | - | chr1_1:60873761-60873780 | None:intergenic | 20.0% |
| !!! | CATAACTTTTTTTTTTCTTG+GGG | + | chr1_1:60873766-60873785 | Msa0033380:intron | 20.0% |
| !! | GTATATGTTTCTTAGAATAA+TGG | + | chr1_1:60874231-60874250 | Msa0033380:intron | 20.0% |
| !!! | AGCAGTTTTATTATAAGAAA+TGG | + | chr1_1:60874645-60874664 | Msa0033380:intron | 20.0% |
| !!! | AAATATTGATGAATTTTAGG+TGG | + | chr1_1:60874978-60874997 | Msa0033380:intron | 20.0% |
| !!! | TTGTGAGTAAATTTTGAATA+TGG | + | chr1_1:60875690-60875709 | Msa0033380:intron | 20.0% |
| !! | TACAATTTCACAATAATACA+TGG | + | chr1_1:60875722-60875741 | Msa0033380:intron | 20.0% |
| !! | ACTAATTCTTATGAAATTCA+GGG | + | chr1_1:60875981-60876000 | Msa0033380:intron | 20.0% |
| !!! | TGCTTAACTTTGTTAAATTT+TGG | + | chr1_1:60876534-60876553 | Msa0033380:three_prime_UTR | 20.0% |
| ! | AGTAGGTAAAAGAAAAATAC+AGG | - | chr1_1:60870444-60870463 | None:intergenic | 25.0% |
| ! | CTATAACAAGTCATTTATTG+AGG | + | chr1_1:60870462-60870481 | Msa0033380:intron | 25.0% |
| ! | CATCAATACAATAGAAAGAT+CGG | - | chr1_1:60870651-60870670 | None:intergenic | 25.0% |
| ! | CTAATCATAGAAAGAATAGT+AGG | + | chr1_1:60871601-60871620 | Msa0033380:intron | 25.0% |
| !! | ACACTTTTATTCCATATTAC+CGG | + | chr1_1:60871908-60871927 | Msa0033380:intron | 25.0% |
| ! | ATGCTGAGTAAGAATAATTA+AGG | + | chr1_1:60871956-60871975 | Msa0033380:intron | 25.0% |
| ! | AAATTAATGTAGTACCAGAA+TGG | - | chr1_1:60872028-60872047 | None:intergenic | 25.0% |
| !!! | TCGTTTTTGTAATTGAAGTT+AGG | + | chr1_1:60872486-60872505 | Msa0033380:intron | 25.0% |
| ! | TTATGTGTACCAAAAAACAT+AGG | + | chr1_1:60872550-60872569 | Msa0033380:intron | 25.0% |
| !! | ATTTTCCTTAAACAGAAAAG+TGG | + | chr1_1:60872767-60872786 | Msa0033380:intron | 25.0% |
| ! | AATTGTAACTGTTAATGTTC+AGG | + | chr1_1:60873276-60873295 | Msa0033380:intron | 25.0% |
| !!! | TGTTTTCTTTGCTTTTGAAA+GGG | + | chr1_1:60873398-60873417 | Msa0033380:intron | 25.0% |
| ! | TGCAATCTTGTTAATTCATT+TGG | + | chr1_1:60873489-60873508 | Msa0033380:intron | 25.0% |
| !!! | CATTTTGTTTTGTGAGATTA+AGG | + | chr1_1:60873516-60873535 | Msa0033380:intron | 25.0% |
| ! | TAAGCAATGTTGTTGAAAAA+TGG | + | chr1_1:60874036-60874055 | Msa0033380:intron | 25.0% |
| ! | ATATTGATCATTAGAGCATA+AGG | + | chr1_1:60874063-60874082 | Msa0033380:intron | 25.0% |
| !!! | ACATTTTTTACTTTGTATGC+TGG | + | chr1_1:60874304-60874323 | Msa0033380:intron | 25.0% |
| ! | TTTGAACTTGTACATTCTTA+AGG | + | chr1_1:60874890-60874909 | Msa0033380:intron | 25.0% |
| !!! | AATTTTAGGTGGTTGAAATT+GGG | + | chr1_1:60874989-60875008 | Msa0033380:intron | 25.0% |
| ! | ATAATAACCAAGACATCAAT+GGG | - | chr1_1:60875228-60875247 | None:intergenic | 25.0% |
| !!! | CTTTTGGAATTCAAAGAATA+CGG | - | chr1_1:60875398-60875417 | None:intergenic | 25.0% |
| !! | AATACATACATGTTTCCTTT+TGG | - | chr1_1:60875414-60875433 | None:intergenic | 25.0% |
| ! | GTATAATAATAGTCAACTTC+TGG | + | chr1_1:60875471-60875490 | Msa0033380:intron | 25.0% |
| ! | CACTAATTCTTATGAAATTC+AGG | + | chr1_1:60875980-60875999 | Msa0033380:intron | 25.0% |
| ! | TCTGTTAAAACATAATTTCC+AGG | + | chr1_1:60876245-60876264 | Msa0033380:intron | 25.0% |
| TCATTTCGTACTAACGTTTA+TGG | - | chr1_1:60871071-60871090 | None:intergenic | 30.0% | |
| ! | CATTCTCAGTTTCGATTTTA+TGG | - | chr1_1:60871678-60871697 | None:intergenic | 30.0% |
| CATAAAATCGAAACTGAGAA+TGG | + | chr1_1:60871676-60871695 | Msa0033380:intron | 30.0% | |
| GTAATTACCTTTATCCATTC+TGG | + | chr1_1:60872011-60872030 | Msa0033380:intron | 30.0% | |
| ! | GACGATAGAGATCAAAATTT+TGG | - | chr1_1:60872105-60872124 | None:intergenic | 30.0% |
| TTTAATCATACGAGTGATTG+TGG | - | chr1_1:60872301-60872320 | None:intergenic | 30.0% | |
| ACTACTCAATACTATGTGAA+TGG | + | chr1_1:60872672-60872691 | Msa0033380:intron | 30.0% | |
| TGAATGGAAGGTAAGAAAAT+TGG | + | chr1_1:60872688-60872707 | Msa0033380:intron | 30.0% | |
| !! | GAAAATTGGTTTGATTCCAA+AGG | + | chr1_1:60872702-60872721 | Msa0033380:intron | 30.0% |
| GGAATATATCCTATATCCTT+TGG | - | chr1_1:60872721-60872740 | None:intergenic | 30.0% | |
| AACAATATGAAATGAAACGG+TGG | - | chr1_1:60873031-60873050 | None:intergenic | 30.0% | |
| ATAAAAAATGAAGTTGCGTG+TGG | - | chr1_1:60873079-60873098 | None:intergenic | 30.0% | |
| !! | GTGTTTTCTTTGCTTTTGAA+AGG | + | chr1_1:60873397-60873416 | Msa0033380:intron | 30.0% |
| ! | ATGTCCAAACATGATAATGA+TGG | + | chr1_1:60873833-60873852 | Msa0033380:intron | 30.0% |
| AGATCCATCATTATCATGTT+TGG | - | chr1_1:60873840-60873859 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCAGGCTGAAGAAA+TGG | + | chr1_1:60873880-60873899 | Msa0033380:intron | 30.0% |
| CTTACACAATTGAAGATCTT+GGG | - | chr1_1:60874183-60874202 | None:intergenic | 30.0% | |
| TAATTGTGATAGAGAGAACA+TGG | + | chr1_1:60874356-60874375 | Msa0033380:intron | 30.0% | |
| AAGAAACACCAAAAGTAAAC+AGG | + | chr1_1:60874526-60874545 | Msa0033380:intron | 30.0% | |
| ! | ATTAAGTCTGATTTGTGTTC+AGG | - | chr1_1:60874722-60874741 | None:intergenic | 30.0% |
| AGAATGTACAAGTTCAAAAG+AGG | - | chr1_1:60874888-60874907 | None:intergenic | 30.0% | |
| TTATGTTGTGATCTTCATTG+AGG | + | chr1_1:60874929-60874948 | Msa0033380:intron | 30.0% | |
| TATGTTGTGATCTTCATTGA+GGG | + | chr1_1:60874930-60874949 | Msa0033380:intron | 30.0% | |
| !! | GAATTTTAGGTGGTTGAAAT+TGG | + | chr1_1:60874988-60875007 | Msa0033380:intron | 30.0% |
| TATGAACTTGACAAGAAAAC+TGG | + | chr1_1:60875030-60875049 | Msa0033380:CDS | 30.0% | |
| CAAGAAAACTGGACTTATTA+AGG | + | chr1_1:60875041-60875060 | Msa0033380:CDS | 30.0% | |
| TGGACTTATTAAGGTGATTA+TGG | + | chr1_1:60875050-60875069 | Msa0033380:intron | 30.0% | |
| TAATAACCAAGACATCAATG+GGG | - | chr1_1:60875227-60875246 | None:intergenic | 30.0% | |
| CATAATAACCAAGACATCAA+TGG | - | chr1_1:60875229-60875248 | None:intergenic | 30.0% | |
| !! | CAACGAAAAGTTAATTTGCA+AGG | - | chr1_1:60875284-60875303 | None:intergenic | 30.0% |
| TGCAATTCTGTTCTCAAATT+TGG | + | chr1_1:60875347-60875366 | Msa0033380:intron | 30.0% | |
| GGATTCTGTTATTAGTTATG+TGG | + | chr1_1:60875368-60875387 | Msa0033380:intron | 30.0% | |
| CGTATTCTTTGAATTCCAAA+AGG | + | chr1_1:60875396-60875415 | Msa0033380:intron | 30.0% | |
| TGATTTCAAATGCAAGAAGT+TGG | + | chr1_1:60875501-60875520 | Msa0033380:intron | 30.0% | |
| ATAGCTCAGAAGTAAAGATA+AGG | - | chr1_1:60875622-60875641 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTAGCCGACTCA+AGG | + | chr1_1:60875651-60875670 | Msa0033380:intron | 30.0% |
| !!! | ATTCTTTTTTGTGCTACAAC+AGG | + | chr1_1:60875830-60875849 | Msa0033380:intron | 30.0% |
| TAGGCATTACAATGATATCA+AGG | + | chr1_1:60876052-60876071 | Msa0033380:CDS | 30.0% | |
| TGTAATCTTCAAAAAAGCGA+CGG | - | chr1_1:60876106-60876125 | None:intergenic | 30.0% | |
| TTACAAGAAGAATGAGAACA+AGG | + | chr1_1:60876121-60876140 | Msa0033380:CDS | 30.0% | |
| TTCCATGTAAGTAACAATGA+TGG | + | chr1_1:60876199-60876218 | Msa0033380:intron | 30.0% | |
| TCCATGTAAGTAACAATGAT+GGG | + | chr1_1:60876200-60876219 | Msa0033380:intron | 30.0% | |
| TGCTATATAGGATAGGATTA+CGG | - | chr1_1:60876464-60876483 | None:intergenic | 30.0% | |
| ATGTACATGCTATATAGGAT+AGG | - | chr1_1:60876471-60876490 | None:intergenic | 30.0% | |
| GACAAATGTACATGCTATAT+AGG | - | chr1_1:60876476-60876495 | None:intergenic | 30.0% | |
| GGCGAGATATATCATATGTT+TGG | - | chr1_1:60870555-60870574 | None:intergenic | 35.0% | |
| ATATGATATATCTCGCCTCA+TGG | + | chr1_1:60870558-60870577 | Msa0033380:intron | 35.0% | |
| TTTACCAAATGGCCAAATGT+AGG | - | chr1_1:60870595-60870614 | None:intergenic | 35.0% | |
| AATGATACTTCGTAGTACGT+GGG | + | chr1_1:60870878-60870897 | Msa0033380:intron | 35.0% | |
| CTTCGATTGAGTAGAACATT+GGG | - | chr1_1:60870946-60870965 | None:intergenic | 35.0% | |
| ATCATAGGACGATAAACCAT+AGG | - | chr1_1:60871002-60871021 | None:intergenic | 35.0% | |
| TGGTTGTGTTTGATACTTTG+AGG | - | chr1_1:60871051-60871070 | None:intergenic | 35.0% | |
| ! | TTTTGTGCCAAATCACCAAA+CGG | - | chr1_1:60871744-60871763 | None:intergenic | 35.0% |
| AATTTGAACCCCTCAACAAA+CGG | - | chr1_1:60871800-60871819 | None:intergenic | 35.0% | |
| ! | TGGAATAAAAGTGTGTGTTG+AGG | - | chr1_1:60871902-60871921 | None:intergenic | 35.0% |
| TTCCATATTACCGGAATATG+CGG | + | chr1_1:60871917-60871936 | Msa0033380:intron | 35.0% | |
| TGTAGTACCAGAATGGATAA+AGG | - | chr1_1:60872021-60872040 | None:intergenic | 35.0% | |
| GGGAATTTATTGCCTAACTT+TGG | - | chr1_1:60872069-60872088 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTGTCGTCTTTTGA+GGG | - | chr1_1:60872089-60872108 | None:intergenic | 35.0% |
| !!! | AATTTTGGTGTCGTCTTTTG+AGG | - | chr1_1:60872090-60872109 | None:intergenic | 35.0% |
| CTCAATACTATGTGAATGGA+AGG | + | chr1_1:60872676-60872695 | Msa0033380:intron | 35.0% | |
| GGTTTGATTCCAAAGGATAT+AGG | + | chr1_1:60872709-60872728 | Msa0033380:intron | 35.0% | |
| CTTAAACAGAAAAGTGGAAG+CGG | + | chr1_1:60872773-60872792 | Msa0033380:intron | 35.0% | |
| TTAAACAGAAAAGTGGAAGC+GGG | + | chr1_1:60872774-60872793 | Msa0033380:intron | 35.0% | |
| TTGTTGAGTATGCAATGGAA+AGG | - | chr1_1:60872867-60872886 | None:intergenic | 35.0% | |
| ! | TTTGCTTGTTGAGTATGCAA+TGG | - | chr1_1:60872872-60872891 | None:intergenic | 35.0% |
| AGGAATGAAATGGAATGGAA+TGG | - | chr1_1:60872899-60872918 | None:intergenic | 35.0% | |
| GAAGAAGGAATGAAATGGAA+TGG | - | chr1_1:60872904-60872923 | None:intergenic | 35.0% | |
| AACGTGAAGAAGGAATGAAA+TGG | - | chr1_1:60872909-60872928 | None:intergenic | 35.0% | |
| AAGTAAGGAAAACGTGAAGA+AGG | - | chr1_1:60872919-60872938 | None:intergenic | 35.0% | |
| TTCTCTTCATTCTCAACTGT+CGG | + | chr1_1:60872981-60873000 | Msa0033380:intron | 35.0% | |
| ATAGCATGGAGTTTGCAAAA+CGG | - | chr1_1:60873166-60873185 | None:intergenic | 35.0% | |
| TCAGTAACTCAACAATAGCA+TGG | - | chr1_1:60873180-60873199 | None:intergenic | 35.0% | |
| ACTGTTAATGTTCAGGCTAA+TGG | + | chr1_1:60873283-60873302 | Msa0033380:intron | 35.0% | |
| ATTTCAGAAACTGCAATTGG+TGG | - | chr1_1:60873437-60873456 | None:intergenic | 35.0% | |
| ACGATTTCAGAAACTGCAAT+TGG | - | chr1_1:60873440-60873459 | None:intergenic | 35.0% | |
| ! | TAGTGTTTTCCCAACAATGT+AGG | + | chr1_1:60874147-60874166 | Msa0033380:intron | 35.0% |
| GCTTACACAATTGAAGATCT+TGG | - | chr1_1:60874184-60874203 | None:intergenic | 35.0% | |
| CTGCTTAACTAGATAAAGCA+AGG | - | chr1_1:60874630-60874649 | None:intergenic | 35.0% | |
| TATATTGCTGACCTGTTGAA+TGG | + | chr1_1:60874675-60874694 | Msa0033380:intron | 35.0% | |
| AGTAATGCTTGTGAGCTATA+GGG | + | chr1_1:60874746-60874765 | Msa0033380:intron | 35.0% | |
| GATTGTTTCCAATCACAACT+TGG | + | chr1_1:60874856-60874875 | Msa0033380:intron | 35.0% | |
| GAACTTGTACATTCTTAAGG+TGG | + | chr1_1:60874893-60874912 | Msa0033380:intron | 35.0% | |
| TGAAATTGGGAAAGGAAACA+AGG | + | chr1_1:60875002-60875021 | Msa0033380:CDS | 35.0% | |
| AATGGCAACAAGTACAACAA+TGG | - | chr1_1:60875094-60875113 | None:intergenic | 35.0% | |
| ! | CTACACATAAAAGCATGCTT+AGG | - | chr1_1:60875124-60875143 | None:intergenic | 35.0% |
| ! | CTAAGCATGCTTTTATGTGT+AGG | + | chr1_1:60875122-60875141 | Msa0033380:intron | 35.0% |
| GATACACAACTGATGAGTAA+AGG | - | chr1_1:60875158-60875177 | None:intergenic | 35.0% | |
| TGATGTCTTGGTTATTATGC+AGG | + | chr1_1:60875230-60875249 | Msa0033380:CDS | 35.0% | |
| TTTCAAATGCAAGAAGTTGG+TGG | + | chr1_1:60875504-60875523 | Msa0033380:intron | 35.0% | |
| AGATAAGGCTCAATATGTCA+AGG | - | chr1_1:60875607-60875626 | None:intergenic | 35.0% | |
| !! | ACATTTTGATCACCTTGAGT+CGG | - | chr1_1:60875666-60875685 | None:intergenic | 35.0% |
| TCAGATACCTGATCAATCAT+AGG | - | chr1_1:60875906-60875925 | None:intergenic | 35.0% | |
| AGTTATTGCCATCTAGGAAA+GGG | - | chr1_1:60875935-60875954 | None:intergenic | 35.0% | |
| AAGTTATTGCCATCTAGGAA+AGG | - | chr1_1:60875936-60875955 | None:intergenic | 35.0% | |
| AAGAGAAGTTATTGCCATCT+AGG | - | chr1_1:60875941-60875960 | None:intergenic | 35.0% | |
| TCATTGTAATGCCTATACTC+AGG | - | chr1_1:60876047-60876066 | None:intergenic | 35.0% | |
| ! | ACCCATCATTGTTACTTACA+TGG | - | chr1_1:60876204-60876223 | None:intergenic | 35.0% |
| GAGTATGAAAACTGAAATCC+TGG | - | chr1_1:60876266-60876285 | None:intergenic | 35.0% | |
| ! | GATGCATATGGGATTTTGTT+TGG | + | chr1_1:60876372-60876391 | Msa0033380:three_prime_UTR | 35.0% |
| TCTGACAATTCATCAAGTAC+TGG | - | chr1_1:60876659-60876678 | None:intergenic | 35.0% | |
| ! | AAGTGGTGTTAGAGAGATGA+AGG | + | chr1_1:60870342-60870361 | Msa0033380:CDS | 40.0% |
| TGAAGGATCAGAGAAACTCA+CGG | + | chr1_1:60870359-60870378 | Msa0033380:CDS | 40.0% | |
| GAATGATACTTCGTAGTACG+TGG | + | chr1_1:60870877-60870896 | Msa0033380:intron | 40.0% | |
| GCTTCGATTGAGTAGAACAT+TGG | - | chr1_1:60870947-60870966 | None:intergenic | 40.0% | |
| CGGGCTCTATAATTGATTGA+TGG | - | chr1_1:60871169-60871188 | None:intergenic | 40.0% | |
| GCTTCAAATGAGAAGCTGTT+AGG | + | chr1_1:60871311-60871330 | Msa0033380:intron | 40.0% | |
| ! | GATTATGGGTCCGTTTGTTA+CGG | - | chr1_1:60871579-60871598 | None:intergenic | 40.0% |
| !!! | TTTTTTCCTACGGGATGTTG+TGG | + | chr1_1:60871633-60871652 | Msa0033380:intron | 40.0% |
| ! | GGAATATCCGTTTGGTGATT+TGG | + | chr1_1:60871734-60871753 | Msa0033380:intron | 40.0% |
| ACGGTGTGTTAAGTTTGCAT+CGG | - | chr1_1:60871781-60871800 | None:intergenic | 40.0% | |
| ! | ACTTAACACACCGTTTGTTG+AGG | + | chr1_1:60871787-60871806 | Msa0033380:intron | 40.0% |
| ! | CTTAACACACCGTTTGTTGA+GGG | + | chr1_1:60871788-60871807 | Msa0033380:intron | 40.0% |
| ! | TTAACACACCGTTTGTTGAG+GGG | + | chr1_1:60871789-60871808 | Msa0033380:intron | 40.0% |
| ATCCGCATATTCCGGTAATA+TGG | - | chr1_1:60871922-60871941 | None:intergenic | 40.0% | |
| TGAGCATCTACTCCAAAGTT+AGG | + | chr1_1:60872054-60872073 | Msa0033380:intron | 40.0% | |
| !! | CGCTTCCACTTTTCTGTTTA+AGG | - | chr1_1:60872775-60872794 | None:intergenic | 40.0% |
| GAAATGGGAAAATGTGAGTG+AGG | - | chr1_1:60872820-60872839 | None:intergenic | 40.0% | |
| GCTTAAGTAGAGGTGGAAAT+GGG | - | chr1_1:60872835-60872854 | None:intergenic | 40.0% | |
| TGCTTAAGTAGAGGTGGAAA+TGG | - | chr1_1:60872836-60872855 | None:intergenic | 40.0% | |
| GAAAGAGGATGCTTAAGTAG+AGG | - | chr1_1:60872845-60872864 | None:intergenic | 40.0% | |
| GTATGCAATGGAAAGGAAAG+AGG | - | chr1_1:60872860-60872879 | None:intergenic | 40.0% | |
| GAATGAAGAGAAGGATGAAG+AGG | - | chr1_1:60872973-60872992 | None:intergenic | 40.0% | |
| GACAGTTGAGAATGAAGAGA+AGG | - | chr1_1:60872982-60873001 | None:intergenic | 40.0% | |
| AATGAAGTTGCGTGTGGTTA+TGG | - | chr1_1:60873073-60873092 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAAGGGTGTTTCTG+AGG | + | chr1_1:60873409-60873428 | Msa0033380:intron | 40.0% |
| ! | ATCTTGTTTGGGGTCTCAAT+TGG | - | chr1_1:60873911-60873930 | None:intergenic | 40.0% |
| GAAAGGATCCTCTCATTAAG+AGG | - | chr1_1:60873962-60873981 | None:intergenic | 40.0% | |
| ! | GGATCCTTTCATCATTGACT+AGG | + | chr1_1:60873972-60873991 | Msa0033380:CDS | 40.0% |
| ! | TCCTTTCATCATTGACTAGG+AGG | + | chr1_1:60873975-60873994 | Msa0033380:CDS | 40.0% |
| ACCTCCTAGTCAATGATGAA+AGG | - | chr1_1:60873979-60873998 | None:intergenic | 40.0% | |
| CTATCTCAAGATCATGCCAT+GGG | - | chr1_1:60874015-60874034 | None:intergenic | 40.0% | |
| ! | ACTAAGGGCCTGTTTACTTT+TGG | - | chr1_1:60874537-60874556 | None:intergenic | 40.0% |
| CTGCGTGAATCATCAACTAA+GGG | - | chr1_1:60874552-60874571 | None:intergenic | 40.0% | |
| ACTGCGTGAATCATCAACTA+AGG | - | chr1_1:60874553-60874572 | None:intergenic | 40.0% | |
| CAACAGGTCAGCAATATAAC+AGG | - | chr1_1:60874673-60874692 | None:intergenic | 40.0% | |
| CAGTAATGCTTGTGAGCTAT+AGG | + | chr1_1:60874745-60874764 | Msa0033380:intron | 40.0% | |
| GGTTAAGCGTTAAGCATGTT+GGG | + | chr1_1:60874767-60874786 | Msa0033380:intron | 40.0% | |
| GTTTCCAATCACAACTTGGA+CGG | + | chr1_1:60874860-60874879 | Msa0033380:intron | 40.0% | |
| TAGGTGGTTGAAATTGGGAA+AGG | + | chr1_1:60874994-60875013 | Msa0033380:intron | 40.0% | |
| !! | GCTTTTATGTGTAGGTTGAC+CGG | + | chr1_1:60875130-60875149 | Msa0033380:intron | 40.0% |
| !! | CTTTTATGTGTAGGTTGACC+GGG | + | chr1_1:60875131-60875150 | Msa0033380:intron | 40.0% |
| GTTGTGTATCCTCACAACTA+TGG | + | chr1_1:60875168-60875187 | Msa0033380:CDS | 40.0% | |
| GGGATAAATCCATAGTTGTG+AGG | - | chr1_1:60875180-60875199 | None:intergenic | 40.0% | |
| ! | CTTGCATTTGAAATCACAGC+TGG | - | chr1_1:60875497-60875516 | None:intergenic | 40.0% |
| TTTCTTCGTGCCAAAGCTAT+TGG | + | chr1_1:60875873-60875892 | Msa0033380:CDS | 40.0% | |
| TCTCATGCCTATGATTGATC+AGG | + | chr1_1:60875896-60875915 | Msa0033380:CDS | 40.0% | |
| GAAACATTCCCTTTCCTAGA+TGG | + | chr1_1:60875924-60875943 | Msa0033380:intron | 40.0% | |
| TTTCAGCTAAACGATGTGGA+GGG | - | chr1_1:60876082-60876101 | None:intergenic | 40.0% | |
| ATTTCAGCTAAACGATGTGG+AGG | - | chr1_1:60876083-60876102 | None:intergenic | 40.0% | |
| AATAGCTTCAAAGGCAGATG+AGG | - | chr1_1:60876174-60876193 | None:intergenic | 40.0% | |
| GGAATGCTCAATAGCTTCAA+AGG | - | chr1_1:60876183-60876202 | None:intergenic | 40.0% | |
| !! | GCGGTAGTATTGATGCATAT+GGG | + | chr1_1:60876361-60876380 | Msa0033380:exon | 40.0% |
| ATATGCATGTGTTGTCAGCT+GGG | - | chr1_1:60876500-60876519 | None:intergenic | 40.0% | |
| AATATGCATGTGTTGTCAGC+TGG | - | chr1_1:60876501-60876520 | None:intergenic | 40.0% | |
| ! | AGAATCGAGTGGCATTTTAC+AGG | - | chr1_1:60876626-60876645 | None:intergenic | 40.0% |
| !! | TTCATCAAGTACTGGATGAG+AGG | - | chr1_1:60876651-60876670 | None:intergenic | 40.0% |
| CACTCCTACATTTGGCCATT+TGG | + | chr1_1:60870588-60870607 | Msa0033380:intron | 45.0% | |
| TGTGTTTCGAGAAGTCACGA+AGG | + | chr1_1:60871095-60871114 | Msa0033380:intron | 45.0% | |
| AAACGGATATTCCTCGACAG+AGG | - | chr1_1:60871727-60871746 | None:intergenic | 45.0% | |
| TCTGTCGAGGAATATCCGTT+TGG | + | chr1_1:60871726-60871745 | Msa0033380:intron | 45.0% | |
| GCAGCATTATCCGCATATTC+CGG | - | chr1_1:60871930-60871949 | None:intergenic | 45.0% | |
| AGAGGATGCTTAAGTAGAGG+TGG | - | chr1_1:60872842-60872861 | None:intergenic | 45.0% | |
| GGAGAGAGAATACGGAAGTA+AGG | - | chr1_1:60872934-60872953 | None:intergenic | 45.0% | |
| ATCTCGAGGGAGAGAGAATA+CGG | - | chr1_1:60872942-60872961 | None:intergenic | 45.0% | |
| CGGTGGCGTAAAAGAGAAAA+CGG | - | chr1_1:60873014-60873033 | None:intergenic | 45.0% | |
| !! | GTGGTTATGGAGCATTGAGA+CGG | - | chr1_1:60873060-60873079 | None:intergenic | 45.0% |
| CAGGCTAATGGCTTCTGAAT+CGG | + | chr1_1:60873295-60873314 | Msa0033380:intron | 45.0% | |
| TGAATCGGAAACTGTCACTG+TGG | + | chr1_1:60873310-60873329 | Msa0033380:CDS | 45.0% | |
| ! | TTGTTTGGGGTCTCAATTGG+TGG | - | chr1_1:60873908-60873927 | None:intergenic | 45.0% |
| ATCCTCTCATTAAGAGGTGG+TGG | - | chr1_1:60873956-60873975 | None:intergenic | 45.0% | |
| AGGATCCTCTCATTAAGAGG+TGG | - | chr1_1:60873959-60873978 | None:intergenic | 45.0% | |
| CCTATCTCAAGATCATGCCA+TGG | - | chr1_1:60874016-60874035 | None:intergenic | 45.0% | |
| CCATGGCATGATCTTGAGAT+AGG | + | chr1_1:60874013-60874032 | Msa0033380:CDS | 45.0% | |
| GCTTCAGGACCTACATTGTT+GGG | - | chr1_1:60874159-60874178 | None:intergenic | 45.0% | |
| AGCTTCAGGACCTACATTGT+TGG | - | chr1_1:60874160-60874179 | None:intergenic | 45.0% | |
| TTGAAGATCTTGGGAGCTTC+AGG | - | chr1_1:60874174-60874193 | None:intergenic | 45.0% | |
| TCAACACGCATCCATTCAAC+AGG | - | chr1_1:60874689-60874708 | None:intergenic | 45.0% | |
| GGGTTAAGCGTTAAGCATGT+TGG | + | chr1_1:60874766-60874785 | Msa0033380:intron | 45.0% | |
| GCATGCTTAGGAACAGCAAA+TGG | - | chr1_1:60875112-60875131 | None:intergenic | 45.0% | |
| CAACTGATGAGTAAAGGACC+CGG | - | chr1_1:60875152-60875171 | None:intergenic | 45.0% | |
| ACCATCCTCACAAATAGTGC+GGG | - | chr1_1:60875202-60875221 | None:intergenic | 45.0% | |
| CACCATCCTCACAAATAGTG+CGG | - | chr1_1:60875203-60875222 | None:intergenic | 45.0% | |
| AGGCATGAGACCAATAGCTT+TGG | - | chr1_1:60875886-60875905 | None:intergenic | 45.0% | |
| ! | GTGCTGATGATCCTGAGTAT+AGG | + | chr1_1:60876033-60876052 | Msa0033380:CDS | 45.0% |
| CGGATTTCAGCTAAACGATG+TGG | - | chr1_1:60876086-60876105 | None:intergenic | 45.0% | |
| CACAACGTAGTCTGCATACA+AGG | - | chr1_1:60876330-60876349 | None:intergenic | 45.0% | |
| CTTGTATGCAGACTACGTTG+TGG | + | chr1_1:60876328-60876347 | Msa0033380:CDS | 45.0% | |
| ACTACGTTGTGGAGAGTTTG+AGG | + | chr1_1:60876339-60876358 | Msa0033380:CDS | 45.0% | |
| !! | GGCGGTAGTATTGATGCATA+TGG | + | chr1_1:60876360-60876379 | Msa0033380:exon | 45.0% |
| GATGAGAGGAAAGAATCGAG+TGG | - | chr1_1:60876637-60876656 | None:intergenic | 45.0% | |
| !!! | AAAAAAATTGATTTTTTTTA+CGG | + | chr1_1:60871462-60871481 | Msa0033380:intron | 5.0% |
| !!! | TATTTAGTATTTAATTTAAT+TGG | - | chr1_1:60872742-60872761 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAAAAAAC+TGG | - | chr1_1:60873555-60873574 | None:intergenic | 5.0% |
| GGATCAGAGAAACTCACGGA+AGG | + | chr1_1:60870363-60870382 | Msa0033380:CDS | 50.0% | |
| CATCCTTCCATTCATCGCCT+GGG | - | chr1_1:60870393-60870412 | None:intergenic | 50.0% | |
| CAGGCGATGAATGGAAGGAT+GGG | + | chr1_1:60870392-60870411 | Msa0033380:CDS | 50.0% | |
| GCCATGCACACTCCTACATT+TGG | + | chr1_1:60870580-60870599 | Msa0033380:intron | 50.0% | |
| ! | GCCAAATGTAGGAGTGTGCA+TGG | - | chr1_1:60870584-60870603 | None:intergenic | 50.0% |
| GGATCAACGTCTCCACTGAT+CGG | + | chr1_1:60870899-60870918 | Msa0033380:intron | 50.0% | |
| GTAGAACATTGGGCACGTGA+AGG | - | chr1_1:60870936-60870955 | None:intergenic | 50.0% | |
| AATCGAAGCAAGCTCTTGCG+AGG | + | chr1_1:60870958-60870977 | Msa0033380:intron | 50.0% | |
| ATCGAAGCAAGCTCTTGCGA+GGG | + | chr1_1:60870959-60870978 | Msa0033380:intron | 50.0% | |
| AGCGCTAGTCATCGCATCAT+AGG | - | chr1_1:60871017-60871036 | None:intergenic | 50.0% | |
| GATGCGATGACTAGCGCTTA+AGG | + | chr1_1:60871019-60871038 | Msa0033380:intron | 50.0% | |
| GATATTCCTCGACAGAGGTG+CGG | - | chr1_1:60871722-60871741 | None:intergenic | 50.0% | |
| ACGGAGATGGCGTTCCTAAT+GGG | - | chr1_1:60871834-60871853 | None:intergenic | 50.0% | |
| CATCTCCGTCAACTCTCTGT+GGG | + | chr1_1:60871845-60871864 | Msa0033380:intron | 50.0% | |
| GTAGCTGATTGGGTGTAACG+TGG | - | chr1_1:60871872-60871891 | None:intergenic | 50.0% | |
| AGGCTGAGCTGTAGCTGATT+GGG | - | chr1_1:60871882-60871901 | None:intergenic | 50.0% | |
| ! | AGAGGAAGCACAGATCTCGA+GGG | - | chr1_1:60872955-60872974 | None:intergenic | 50.0% |
| ! | AAGAGGAAGCACAGATCTCG+AGG | - | chr1_1:60872956-60872975 | None:intergenic | 50.0% |
| TCGGAAACTGTCACTGTGGT+TGG | + | chr1_1:60873314-60873333 | Msa0033380:intron | 50.0% | |
| ! | TCGCGGTGGGAATCTTGTTT+GGG | - | chr1_1:60873922-60873941 | None:intergenic | 50.0% |
| TTCGCGGTGGGAATCTTGTT+TGG | - | chr1_1:60873923-60873942 | None:intergenic | 50.0% | |
| ! | TGGTGGTGAGGTGTAATTCG+CGG | - | chr1_1:60873939-60873958 | None:intergenic | 50.0% |
| ! | CTCATTAAGAGGTGGTGGTG+AGG | - | chr1_1:60873951-60873970 | None:intergenic | 50.0% |
| CACCACCACCTCTTAATGAG+AGG | + | chr1_1:60873951-60873970 | Msa0033380:CDS | 50.0% | |
| GGAACCGTCCAAGTTGTGAT+TGG | - | chr1_1:60874867-60874886 | None:intergenic | 50.0% | |
| TATCCCCCGCACTATTTGTG+AGG | + | chr1_1:60875194-60875213 | Msa0033380:CDS | 50.0% | |
| CATCCTCACAAATAGTGCGG+GGG | - | chr1_1:60875200-60875219 | None:intergenic | 50.0% | |
| CCATCCTCACAAATAGTGCG+GGG | - | chr1_1:60875201-60875220 | None:intergenic | 50.0% | |
| TGGTGACCCCATTGATGTCT+TGG | + | chr1_1:60875218-60875237 | Msa0033380:CDS | 50.0% | |
| AGAAAGCAGCCAGGAAGAAC+TGG | - | chr1_1:60875858-60875877 | None:intergenic | 50.0% | |
| CAAAGGCAGATGAGGAAGGA+AGG | - | chr1_1:60876166-60876185 | None:intergenic | 50.0% | |
| GCTTCAAAGGCAGATGAGGA+AGG | - | chr1_1:60876170-60876189 | None:intergenic | 50.0% | |
| ACGTTGTGGAGAGTTTGAGG+CGG | + | chr1_1:60876342-60876361 | Msa0033380:CDS | 50.0% | |
| AACTCACGGAAGGAGAACCC+AGG | + | chr1_1:60870373-60870392 | Msa0033380:CDS | 55.0% | |
| AGGAGAACCCAGGCGATGAA+TGG | + | chr1_1:60870383-60870402 | Msa0033380:CDS | 55.0% | |
| GAACCCAGGCGATGAATGGA+AGG | + | chr1_1:60870387-60870406 | Msa0033380:CDS | 55.0% | |
| CCATCCTTCCATTCATCGCC+TGG | - | chr1_1:60870394-60870413 | None:intergenic | 55.0% | |
| CCAGGCGATGAATGGAAGGA+TGG | + | chr1_1:60870391-60870410 | Msa0033380:CDS | 55.0% | |
| ! | TAGGAGTGTGCATGGCCATG+AGG | - | chr1_1:60870576-60870595 | None:intergenic | 55.0% |
| AAGCAAGCTCTTGCGAGGGT+GGG | + | chr1_1:60870963-60870982 | Msa0033380:intron | 55.0% | |
| TTGCTGCCACAACATCCCGT+AGG | - | chr1_1:60871642-60871661 | None:intergenic | 55.0% | |
| ATTGCACCGCACGACCCATT+AGG | + | chr1_1:60871817-60871836 | Msa0033380:intron | 55.0% | |
| GACGGAGATGGCGTTCCTAA+TGG | - | chr1_1:60871835-60871854 | None:intergenic | 55.0% | |
| CCACAGAGAGTTGACGGAGA+TGG | - | chr1_1:60871847-60871866 | None:intergenic | 55.0% | |
| CCATCTCCGTCAACTCTCTG+TGG | + | chr1_1:60871844-60871863 | Msa0033380:intron | 55.0% | |
| GTGGACCCACAGAGAGTTGA+CGG | - | chr1_1:60871853-60871872 | None:intergenic | 55.0% | |
| GAGGCTGAGCTGTAGCTGAT+TGG | - | chr1_1:60871883-60871902 | None:intergenic | 55.0% | |
| ! | CGCGGTGGGAATCTTGTTTG+GGG | - | chr1_1:60873921-60873940 | None:intergenic | 55.0% |
| GGTGAGGTGTAATTCGCGGT+GGG | - | chr1_1:60873935-60873954 | None:intergenic | 55.0% | |
| TGGTGAGGTGTAATTCGCGG+TGG | - | chr1_1:60873936-60873955 | None:intergenic | 55.0% | |
| CCCCGCACTATTTGTGAGGA+TGG | + | chr1_1:60875198-60875217 | Msa0033380:CDS | 55.0% | |
| CAACAGGAGCCAGTTCTTCC+TGG | + | chr1_1:60875846-60875865 | Msa0033380:intron | 55.0% | |
| TTGGCACGAAGAAAGCAGCC+AGG | - | chr1_1:60875867-60875886 | None:intergenic | 55.0% | |
| GTGCTCACGCAACCGATCAG+TGG | - | chr1_1:60870914-60870933 | None:intergenic | 60.0% | |
| GAAGCAAGCTCTTGCGAGGG+TGG | + | chr1_1:60870962-60870981 | Msa0033380:intron | 60.0% | |
| AAGCTCTTGCGAGGGTGGGA+GGG | + | chr1_1:60870967-60870986 | Msa0033380:intron | 60.0% | |
| GGGAGGGTCTCAGACTCCTA+TGG | + | chr1_1:60870983-60871002 | Msa0033380:intron | 60.0% | |
| TCAGATCCGCACCTCTGTCG+AGG | + | chr1_1:60871713-60871732 | Msa0033380:intron | 60.0% | |
| ! | GGCGTTCCTAATGGGTCGTG+CGG | - | chr1_1:60871826-60871845 | None:intergenic | 60.0% |
| GGTCTGTTGCTGCACACCCA+TGG | + | chr1_1:60873996-60874015 | Msa0033380:CDS | 60.0% | |
| CAAGCTCTTGCGAGGGTGGG+AGG | + | chr1_1:60870966-60870985 | Msa0033380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60870337 | 60876697 | 60870337 | ID=Msa0033380;Name=Msa0033380 |
| chr1_1 | mRNA | 60870337 | 60876697 | 60870337 | ID=Msa0033380-mRNA-1;Parent=Msa0033380;Name=Msa0033380-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.88|0.9|0.9|1|1|10|330|285 |
| chr1_1 | exon | 60870337 | 60870443 | 60870337 | ID=Msa0033380-mRNA-1:exon:19069;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60873298 | 60873331 | 60873298 | ID=Msa0033380-mRNA-1:exon:19070;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60873419 | 60873475 | 60873419 | ID=Msa0033380-mRNA-1:exon:19071;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60873890 | 60874034 | 60873890 | ID=Msa0033380-mRNA-1:exon:19072;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60874169 | 60874197 | 60874169 | ID=Msa0033380-mRNA-1:exon:19073;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60874997 | 60875062 | 60874997 | ID=Msa0033380-mRNA-1:exon:19074;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60875144 | 60875251 | 60875144 | ID=Msa0033380-mRNA-1:exon:19075;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60875852 | 60875917 | 60875852 | ID=Msa0033380-mRNA-1:exon:19076;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60876002 | 60876204 | 60876002 | ID=Msa0033380-mRNA-1:exon:19077;Parent=Msa0033380-mRNA-1 |
| chr1_1 | exon | 60876325 | 60876697 | 60876325 | ID=Msa0033380-mRNA-1:exon:19078;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60870337 | 60870443 | 60870337 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60873298 | 60873331 | 60873298 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60873419 | 60873475 | 60873419 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60873890 | 60874034 | 60873890 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60874169 | 60874197 | 60874169 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60874997 | 60875062 | 60874997 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60875144 | 60875251 | 60875144 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60875852 | 60875917 | 60875852 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60876002 | 60876204 | 60876002 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | CDS | 60876325 | 60876367 | 60876325 | ID=Msa0033380-mRNA-1:cds;Parent=Msa0033380-mRNA-1 |
| chr1_1 | three_prime_UTR | 60876368 | 60876697 | 60876368 | ID=Msa0033380-mRNA-1:three_prime_utr;Parent=Msa0033380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
