AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034980 MtrunA17_Chr1g0197351 94.585 277 1 1 1 277 1 263 0.0 543
Msa0034980 MtrunA17_Chr1g0197361 56.938 209 67 4 43 249 9 196 1.84e-72 233
Msa0034980 MtrunA17_Chr3g0092671 55.046 218 65 5 43 258 6 192 1.66e-71 229
Msa0034980 MtrunA17_Chr8g0364791 47.917 240 95 6 42 271 6 225 8.57e-66 212
Msa0034980 MtrunA17_Chr3g0130101 51.562 192 72 3 42 232 7 178 3.90e-62 200
Msa0034980 MtrunA17_Chr1g0201021 51.208 207 79 3 29 233 5 191 6.60e-61 202
Msa0034980 MtrunA17_Chr2g0309891 53.714 175 62 2 39 213 3 158 9.60e-60 194
Msa0034980 MtrunA17_Chr6g0481091 54.237 177 61 2 39 215 3 159 1.55e-59 190
Msa0034980 MtrunA17_Chr3g0109821 54.011 187 66 2 39 224 3 170 4.54e-59 199
Msa0034980 MtrunA17_Chr8g0384201 45.217 230 101 3 42 266 6 215 6.26e-59 195
Msa0034980 MtrunA17_Chr5g0433781 53.886 193 68 3 39 230 3 175 2.27e-58 197
Msa0034980 MtrunA17_Chr5g0405211 42.130 216 96 6 44 258 10 197 3.52e-52 174
Msa0034980 MtrunA17_Chr3g0128111 44.500 200 91 2 15 214 15 194 1.36e-51 169
Msa0034980 MtrunA17_Chr3g0128151 47.872 188 78 1 27 214 7 174 1.40e-50 175
Msa0034980 MtrunA17_Chr4g0042561 45.455 187 84 3 36 222 3 171 1.81e-50 167
Msa0034980 MtrunA17_Chr8g0372121 41.872 203 93 5 44 244 8 187 2.76e-50 168
Msa0034980 MtrunA17_Chr1g0200561 46.032 189 75 4 25 212 6 168 7.41e-50 168
Msa0034980 MtrunA17_Chr4g0017921 47.977 173 66 3 44 215 10 159 1.02e-49 168
Msa0034980 MtrunA17_Chr4g0018391 50.000 172 59 6 44 212 9 156 1.44e-49 167
Msa0034980 MtrunA17_Chr2g0309331 44.792 192 78 4 41 230 9 174 1.93e-49 167
Msa0034980 MtrunA17_Chr4g0047841 46.032 189 95 4 31 214 4 190 2.22e-49 167
Msa0034980 MtrunA17_Chr5g0400461 50.556 180 59 3 41 213 5 161 2.78e-49 166
Msa0034980 MtrunA17_Chr4g0056541 49.412 170 63 3 44 212 9 156 5.37e-49 166
Msa0034980 MtrunA17_Chr5g0428991 45.789 190 81 2 27 214 8 177 7.31e-49 171
Msa0034980 MtrunA17_Chr2g0318101 41.667 216 107 5 33 246 6 204 7.89e-48 163
Msa0034980 MtrunA17_Chr5g0398971 45.614 171 70 4 44 212 9 158 7.99e-47 160
Msa0034980 MtrunA17_Chr5g0417791 45.402 174 77 2 42 215 3 158 8.37e-47 157
Msa0034980 MtrunA17_Chr3g0124761 46.199 171 72 3 42 212 7 157 1.12e-46 158
Msa0034980 MtrunA17_Chr2g0316971 48.588 177 69 4 42 216 23 179 1.28e-46 160
Msa0034980 MtrunA17_Chr7g0252971 43.011 186 79 3 36 212 2 169 1.32e-46 159
Msa0034980 MtrunA17_Chr2g0318081 46.448 183 73 4 41 220 15 175 1.53e-46 159
Msa0034980 MtrunA17_Chr8g0346001 40.284 211 109 5 31 235 4 203 2.18e-46 161
Msa0034980 MtrunA17_Chr4g0054791 57.778 135 54 1 41 172 5 139 3.10e-46 158
Msa0034980 MtrunA17_Chr6g0484441 47.093 172 67 2 41 212 4 151 1.34e-45 156
Msa0034980 MtrunA17_Chr8g0359921 45.402 174 75 2 41 214 13 166 2.50e-45 155
Msa0034980 MtrunA17_Chr3g0091921 59.375 128 50 1 42 169 16 141 2.78e-45 155
Msa0034980 MtrunA17_Chr4g0076731 52.857 140 63 2 42 180 54 191 7.77e-45 157
Msa0034980 MtrunA17_Chr4g0060931 47.429 175 72 3 42 216 17 171 1.34e-44 155
Msa0034980 MtrunA17_Chr7g0253011 46.591 176 70 4 42 213 17 172 6.23e-44 154
Msa0034980 MtrunA17_Chr3g0139331 42.935 184 79 3 35 216 4 163 9.86e-44 152
Msa0034980 MtrunA17_Chr6g0453451 45.143 175 76 2 42 216 20 174 1.43e-43 151
Msa0034980 MtrunA17_Chr7g0214071 47.253 182 67 4 42 221 15 169 1.48e-43 149
Msa0034980 MtrunA17_Chr8g0361731 41.667 180 80 4 42 214 14 175 3.94e-43 152
Msa0034980 MtrunA17_Chr1g0147421 56.061 132 53 3 41 169 26 155 4.09e-43 151
Msa0034980 MtrunA17_Chr6g0461661 37.349 249 125 7 30 271 6 230 5.69e-43 151
Msa0034980 MtrunA17_Chr2g0326361 43.103 174 79 3 41 212 13 168 7.36e-43 149
Msa0034980 MtrunA17_Chr6g0453131 54.264 129 56 2 42 169 15 141 1.93e-42 150
Msa0034980 MtrunA17_Chr5g0442771 40.887 203 100 5 42 241 18 203 2.02e-42 148
Msa0034980 MtrunA17_Chr3g0130731 45.614 171 73 4 42 212 7 157 2.18e-42 147
Msa0034980 MtrunA17_Chr7g0263931 43.575 179 79 5 42 218 11 169 2.19e-42 148
Msa0034980 MtrunA17_Chr1g0183741 44.318 176 66 5 41 212 9 156 2.87e-42 146
Msa0034980 MtrunA17_Chr8g0384721 45.029 171 75 4 42 212 7 158 9.43e-42 145
Msa0034980 MtrunA17_Chr5g0417001 42.778 180 77 5 42 214 14 174 2.58e-41 147
Msa0034980 MtrunA17_Chr7g0217721 46.369 179 88 4 45 222 22 193 3.37e-41 145
Msa0034980 MtrunA17_Chr2g0312321 44.767 172 72 4 42 213 11 159 6.81e-41 144
Msa0034980 MtrunA17_Chr7g0217711 56.000 125 53 1 45 169 22 144 8.42e-41 139
Msa0034980 MtrunA17_Chr4g0038751 55.039 129 53 2 44 169 17 143 1.07e-40 143
Msa0034980 MtrunA17_Chr7g0261411 43.931 173 69 4 41 211 9 155 1.19e-40 142
Msa0034980 MtrunA17_Chr2g0311651 44.253 174 83 4 44 213 24 187 2.26e-38 137
Msa0034980 MtrunA17_Chr3g0144271 54.198 131 55 3 42 169 23 151 2.12e-37 137
Msa0034980 MtrunA17_Chr2g0311661 42.529 174 86 4 44 213 23 186 5.06e-37 133
Msa0034980 MtrunA17_Chr8g0385991 46.479 142 70 2 40 179 12 149 9.21e-36 128
Msa0034980 MtrunA17_Chr8g0345671 53.968 126 54 3 45 167 14 138 2.05e-34 129
Msa0034980 MtrunA17_Chr3g0131911 40.541 185 88 4 40 220 12 178 2.46e-33 122
Msa0034980 MtrunA17_Chr8g0345691 48.148 135 64 4 38 167 6 139 8.35e-32 122
Msa0034980 MtrunA17_Chr4g0026141 38.596 171 84 5 44 210 7 160 6.49e-30 114
Msa0034980 MtrunA17_Chr2g0321631 37.209 172 86 6 44 210 6 160 1.76e-29 112
Msa0034980 MtrunA17_Chr8g0345711 46.269 134 64 4 42 170 12 142 5.14e-29 108
Msa0034980 MtrunA17_Chr2g0321741 51.887 106 50 1 62 167 12 116 6.10e-29 113
Msa0034980 MtrunA17_Chr8g0345741 46.610 118 59 3 53 167 2 118 1.49e-28 107
Msa0034980 MtrunA17_Chr7g0266701 37.640 178 91 7 41 213 3 165 5.51e-28 108
Msa0034980 MtrunA17_Chr8g0345731 44.853 136 60 5 42 167 24 154 7.82e-28 105
Msa0034980 MtrunA17_Chr8g0345701 43.448 145 62 5 40 167 5 146 1.92e-27 105
Msa0034980 MtrunA17_Chr8g0345721 38.824 170 67 5 38 173 31 197 4.63e-27 105
Msa0034980 MtrunA17_Chr4g0050701 43.077 130 62 3 42 169 11 130 5.37e-27 104
Msa0034980 MtrunA17_Chr3g0113001 43.802 121 51 2 94 214 15 118 3.48e-23 96.7
Msa0034980 MtrunA17_Chr3g0113031 42.149 121 53 3 107 226 3 107 9.19e-21 89.4
Msa0034980 MtrunA17_Chr7g0243371 53.947 76 31 2 97 169 17 91 2.30e-20 84.3
Msa0034980 MtrunA17_Chr8g0384351 37.500 128 62 5 42 169 10 119 1.58e-18 81.6
Msa0034980 MtrunA17_Chr7g0251661 31.111 135 89 3 34 167 2 133 2.61e-16 74.7
Msa0034980 MtrunA17_Chr3g0130321 30.688 189 104 8 42 224 7 174 7.51e-16 74.7
Msa0034980 MtrunA17_Chr7g0251651 33.071 127 81 3 42 167 18 141 1.53e-15 73.6
Msa0034980 MtrunA17_Chr1g0194791 71.739 46 12 1 43 87 47 92 3.59e-15 70.1
Msa0034980 MtrunA17_Chr3g0113011 62.791 43 16 0 45 87 22 64 5.47e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034980 AT3G10480.1 61.328 256 61 5 1 252 1 222 7.20e-101 303
Msa0034980 AT3G10490.1 60.547 256 58 5 1 247 1 222 1.36e-100 295
Msa0034980 AT3G10480.2 61.328 256 60 6 1 252 1 221 1.22e-99 300
Msa0034980 AT3G10490.2 55.914 279 77 5 1 270 1 242 4.39e-99 298
Msa0034980 AT3G10480.3 54.671 289 60 6 1 252 1 255 1.72e-95 291
Msa0034980 AT5G04410.1 60.748 214 62 4 40 251 7 200 9.75e-83 259
Msa0034980 AT3G10500.1 61.376 189 52 2 40 227 7 175 1.96e-76 243
Msa0034980 AT1G34180.3 47.907 215 88 3 43 253 17 211 4.53e-60 197
Msa0034980 AT3G17730.1 54.237 177 61 2 39 215 3 159 1.33e-59 191
Msa0034980 AT1G34180.1 47.907 215 88 3 43 253 17 211 2.21e-59 199
Msa0034980 AT5G64060.1 51.282 195 74 2 40 233 4 178 2.99e-59 193
Msa0034980 AT1G34190.1 51.053 190 72 2 43 231 17 186 2.57e-58 196
Msa0034980 AT1G34180.4 46.256 227 86 5 43 253 17 223 4.36e-58 193
Msa0034980 AT3G03200.1 56.897 174 56 1 39 212 3 157 4.55e-58 193
Msa0034980 AT1G34180.2 46.256 227 86 5 43 253 17 223 2.48e-57 193
Msa0034980 AT1G65910.1 53.933 178 62 2 39 216 3 160 2.52e-57 194
Msa0034980 AT5G17260.1 51.813 193 70 2 39 227 3 176 4.72e-57 191
Msa0034980 AT5G09330.5 50.256 195 76 2 40 233 4 178 2.49e-55 186
Msa0034980 AT5G09330.2 50.256 195 76 2 40 233 4 178 2.49e-55 186
Msa0034980 AT5G09330.4 50.256 195 76 2 40 233 4 178 2.49e-55 186
Msa0034980 AT5G09330.3 50.256 195 76 2 40 233 4 178 2.49e-55 186
Msa0034980 AT5G09330.1 50.256 195 76 2 40 233 4 178 2.49e-55 186
Msa0034980 AT1G54330.1 54.857 175 56 2 39 213 3 154 6.13e-54 177
Msa0034980 AT5G04395.1 54.601 163 59 4 26 173 11 173 3.34e-52 169
Msa0034980 AT1G32870.1 52.910 189 64 4 42 227 10 176 2.16e-51 177
Msa0034980 AT1G32870.2 52.910 189 64 4 42 227 10 176 2.64e-51 176
Msa0034980 AT5G46590.1 47.594 187 78 2 40 225 4 171 3.69e-51 170
Msa0034980 AT5G24590.2 49.432 176 68 2 41 215 12 167 4.97e-51 174
Msa0034980 AT1G32870.3 52.910 189 64 4 42 227 46 212 6.28e-51 176
Msa0034980 AT3G49530.2 48.864 176 69 3 41 215 12 167 1.78e-50 172
Msa0034980 AT2G18060.3 46.328 177 72 3 41 216 8 162 3.16e-50 170
Msa0034980 AT2G18060.1 46.328 177 72 3 41 216 8 162 3.16e-50 170
Msa0034980 AT3G49530.1 48.864 176 69 3 41 215 12 167 4.76e-50 172
Msa0034980 AT1G33060.2 46.524 187 80 2 26 212 8 174 2.96e-49 173
Msa0034980 AT1G33060.1 46.524 187 80 2 26 212 8 174 3.33e-49 173
Msa0034980 AT4G36160.1 45.213 188 77 4 35 221 3 165 4.43e-49 167
Msa0034980 AT4G36160.3 45.213 188 77 4 35 221 3 165 4.43e-49 167
Msa0034980 AT4G36160.2 45.213 188 77 4 35 221 7 169 4.46e-49 167
Msa0034980 AT1G33280.1 46.243 173 69 3 44 215 10 159 5.61e-49 165
Msa0034980 AT1G32770.1 46.023 176 84 2 40 214 14 179 6.30e-49 166
Msa0034980 AT5G46590.2 57.037 135 57 1 40 173 4 138 6.41e-49 164
Msa0034980 AT4G10350.1 46.821 173 71 3 44 215 11 163 7.43e-49 166
Msa0034980 AT4G17980.1 48.864 176 70 3 40 213 4 161 7.81e-49 163
Msa0034980 AT1G79580.3 46.237 186 75 3 31 214 6 168 1.07e-48 166
Msa0034980 AT1G79580.5 46.237 186 75 3 31 214 6 168 1.07e-48 166
Msa0034980 AT1G79580.4 46.237 186 75 3 31 214 6 168 1.07e-48 166
Msa0034980 AT1G79580.2 46.237 186 75 3 31 214 6 168 1.07e-48 166
Msa0034980 AT1G79580.1 46.237 186 75 3 31 214 6 168 1.07e-48 166
Msa0034980 AT5G66300.1 46.067 178 74 3 41 217 11 167 1.24e-48 164
Msa0034980 AT4G17980.2 48.864 176 70 3 40 213 4 161 1.84e-48 163
Msa0034980 AT1G71930.2 45.977 174 71 3 40 212 7 158 2.31e-48 164
Msa0034980 AT1G71930.1 45.977 174 71 3 40 212 7 158 2.31e-48 164
Msa0034980 AT2G46770.1 43.386 189 97 3 29 215 3 183 3.58e-48 164
Msa0034980 AT3G04070.1 44.974 189 88 5 35 212 3 186 9.49e-48 163
Msa0034980 AT4G27410.2 46.552 174 71 3 41 214 13 164 2.59e-47 160
Msa0034980 AT3G04070.2 44.737 190 73 5 35 213 3 171 3.23e-47 161
Msa0034980 AT1G12260.2 47.059 170 67 3 44 212 9 156 3.74e-47 161
Msa0034980 AT1G12260.1 47.059 170 67 3 44 212 9 156 6.90e-47 162
Msa0034980 AT4G35580.1 48.837 172 68 1 41 212 8 159 8.76e-47 164
Msa0034980 AT4G35580.3 48.837 172 68 1 41 212 8 159 1.18e-46 164
Msa0034980 AT3G61910.1 40.191 209 110 5 33 233 2 203 1.23e-46 160
Msa0034980 AT4G35580.2 48.023 177 72 1 36 212 3 159 1.23e-46 164
Msa0034980 AT3G18400.1 48.256 172 66 3 41 212 4 152 4.36e-46 157
Msa0034980 AT1G62700.1 46.552 174 70 3 40 212 5 156 4.91e-46 160
Msa0034980 AT1G62700.2 46.552 174 70 3 40 212 5 156 4.91e-46 160
Msa0034980 AT1G61110.1 44.330 194 95 5 42 234 16 197 5.33e-46 158
Msa0034980 AT5G07680.2 48.571 175 70 3 42 216 3 157 6.70e-46 157
Msa0034980 AT5G07680.1 48.571 175 70 3 42 216 17 171 1.22e-45 157
Msa0034980 AT3G15510.1 47.701 174 72 4 46 214 21 180 1.23e-45 158
Msa0034980 AT3G15500.1 47.093 172 69 3 41 212 13 162 1.86e-45 156
Msa0034980 AT3G10490.4 49.390 164 52 4 116 270 1 142 2.64e-45 157
Msa0034980 AT3G10490.3 49.390 164 52 4 116 270 1 142 2.64e-45 157
Msa0034980 AT3G12977.1 45.455 176 75 3 41 216 17 171 3.69e-45 154
Msa0034980 AT2G24430.2 47.126 174 67 3 41 212 15 165 4.07e-45 155
Msa0034980 AT2G24430.1 47.126 174 67 3 41 212 15 165 4.07e-45 155
Msa0034980 AT5G62380.2 46.512 172 69 3 42 212 7 156 5.29e-45 156
Msa0034980 AT5G62380.1 46.512 172 69 3 42 212 7 156 5.29e-45 156
Msa0034980 AT4G27410.3 51.370 146 56 1 41 171 13 158 6.38e-45 155
Msa0034980 AT1G77450.1 44.186 172 76 3 44 215 12 163 6.49e-45 153
Msa0034980 AT5G39610.1 48.295 176 71 2 41 216 19 174 6.54e-45 154
Msa0034980 AT1G52890.1 46.512 172 70 3 41 212 13 162 1.01e-44 154
Msa0034980 AT5G61430.1 48.000 175 71 3 42 216 16 170 1.22e-44 154
Msa0034980 AT3G44290.2 53.425 146 62 2 35 175 2 146 2.71e-44 150
Msa0034980 AT1G69490.1 44.828 174 76 3 40 212 7 161 3.22e-44 151
Msa0034980 AT2G33480.2 49.123 171 60 4 42 212 15 158 4.03e-44 151
Msa0034980 AT5G39820.1 46.067 178 87 4 42 214 20 193 5.56e-44 153
Msa0034980 AT5G53950.1 48.023 177 70 4 42 216 17 173 7.11e-44 154
Msa0034980 AT1G01720.1 41.294 201 95 4 42 238 7 188 9.99e-44 151
Msa0034980 AT2G33480.1 47.953 171 64 3 42 212 15 160 1.07e-43 150
Msa0034980 AT5G18270.2 48.851 174 68 4 42 214 21 174 1.15e-43 152
Msa0034980 AT3G29035.1 59.375 128 50 1 42 169 24 149 1.27e-43 151
Msa0034980 AT5G18270.1 48.851 174 68 4 42 214 21 174 1.85e-43 151
Msa0034980 AT5G22290.1 50.694 144 70 1 24 167 3 145 2.83e-43 151
Msa0034980 AT3G44290.1 53.425 146 62 2 35 175 2 146 2.86e-43 151
Msa0034980 AT3G15170.1 56.154 130 53 2 42 169 20 147 3.09e-43 150
Msa0034980 AT1G32510.1 43.878 196 84 3 42 230 6 182 3.57e-43 149
Msa0034980 AT2G27300.1 56.250 128 55 1 40 167 12 138 4.76e-43 150
Msa0034980 AT2G02450.1 52.206 136 62 2 42 176 51 184 5.97e-43 151
Msa0034980 AT2G02450.2 52.206 136 62 2 42 176 51 184 9.75e-43 151
Msa0034980 AT3G04060.1 46.243 173 72 3 42 213 20 172 1.10e-42 149
Msa0034980 AT5G63790.1 44.767 172 77 4 41 212 49 202 1.43e-42 149
Msa0034980 AT5G63790.2 44.767 172 77 4 41 212 59 212 1.55e-42 149
Msa0034980 AT5G08790.1 45.349 172 76 4 41 212 6 159 4.01e-42 146
Msa0034980 AT2G43000.1 44.379 169 73 3 44 212 20 167 5.79e-41 143
Msa0034980 AT1G26870.1 44.382 178 78 4 42 214 16 177 6.05e-41 147
Msa0034980 AT1G56010.2 46.023 176 75 5 42 216 19 175 7.49e-41 144
Msa0034980 AT1G76420.1 46.243 173 68 4 42 212 22 171 8.36e-41 144
Msa0034980 AT5G13180.1 46.111 180 69 4 42 219 14 167 1.01e-40 142
Msa0034980 AT1G52880.1 46.591 176 70 4 46 214 21 179 1.45e-40 143
Msa0034980 AT2G17040.1 53.488 129 55 2 44 169 8 134 1.82e-40 142
Msa0034980 AT4G28530.1 42.188 192 65 6 40 212 8 172 1.93e-37 136
Msa0034980 AT3G12910.1 41.538 195 90 8 44 233 23 198 9.59e-35 128
Msa0034980 AT3G12977.2 47.500 120 44 2 98 217 19 119 1.59e-30 114
Msa0034980 AT4G01520.1 44.697 132 66 4 45 170 7 137 1.63e-29 114
Msa0034980 AT4G01540.3 45.455 132 65 4 45 170 7 137 1.47e-28 113
Msa0034980 AT4G01540.4 45.455 132 65 4 45 170 7 137 1.87e-28 112
Msa0034980 AT4G01540.1 45.455 132 65 4 45 170 7 137 2.23e-28 114
Msa0034980 AT4G01540.2 45.802 131 64 4 45 169 7 136 2.28e-28 113
Msa0034980 AT1G56010.1 47.899 119 45 3 98 216 7 108 2.98e-28 109
Msa0034980 AT3G44350.1 40.299 134 76 3 42 171 5 138 3.07e-27 104
Msa0034980 AT3G44350.2 40.299 134 76 3 42 171 5 138 4.73e-27 106
Msa0034980 AT5G22380.1 35.758 165 98 4 45 204 8 169 8.41e-27 105
Msa0034980 AT4G10350.2 42.975 121 49 2 95 215 16 116 1.23e-26 106
Msa0034980 AT4G01550.1 37.853 177 79 5 45 216 7 157 4.30e-26 107
Msa0034980 AT3G04420.2 40.800 125 72 1 45 167 6 130 4.89e-26 104
Msa0034980 AT3G04420.1 40.800 125 72 1 45 167 6 130 9.76e-26 104
Msa0034980 AT5G61430.2 44.715 123 50 2 94 216 3 107 1.29e-25 103
Msa0034980 AT1G02230.1 43.750 128 64 4 45 167 6 130 4.76e-25 103
Msa0034980 AT5G64530.1 36.000 175 90 5 41 213 2 156 3.76e-24 97.1
Msa0034980 AT4G28530.2 43.609 133 53 4 40 153 8 137 4.53e-24 99.8
Msa0034980 AT1G02250.1 43.750 128 64 3 45 167 6 130 8.32e-24 99.8
Msa0034980 AT2G33480.3 44.828 116 44 2 97 212 8 103 9.51e-24 96.7
Msa0034980 AT1G01010.1 42.857 133 64 4 45 167 6 136 3.16e-23 99.0
Msa0034980 AT5G64530.2 41.221 131 61 4 41 169 2 118 3.45e-23 93.6
Msa0034980 AT1G02220.1 38.583 127 69 3 45 167 6 127 1.25e-20 91.3
Msa0034980 AT5G50820.1 36.090 133 71 4 42 170 17 139 4.68e-16 75.5
Msa0034980 AT2G43000.2 39.048 105 45 2 108 212 4 89 6.57e-16 75.1
Msa0034980 AT2G18060.2 38.542 96 37 2 121 216 1 74 7.18e-16 76.3
Msa0034980 AT3G04430.1 35.606 132 71 5 48 167 6 135 2.23e-15 73.6
Msa0034980 AT5G14000.2 32.308 130 82 2 42 169 15 140 5.76e-15 71.2
Msa0034980 AT5G22290.2 64.444 45 16 0 123 167 2 46 2.89e-14 71.2
Msa0034980 AT5G14000.1 32.061 131 83 2 42 170 15 141 3.25e-14 70.5
Msa0034980 AT3G56530.1 33.846 130 81 4 41 167 51 178 3.45e-13 69.3

Find 106 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGAAACGCAAGGTTTC+TGG 0.120223 1_1:+62979016 Msa0034980:CDS
TTCCAGAAACCTTGCGTTTC+AGG 0.148202 1_1:-62979018 None:intergenic
GTTGGTTGTGGTGGCAGATG+GGG 0.287064 1_1:-62978876 None:intergenic
GGTTGGTTGTGGTGGCAGAT+GGG 0.309914 1_1:-62978877 None:intergenic
TTGGTTGTGGTGGCAGATGG+GGG 0.318306 1_1:-62978875 None:intergenic
CCACCAACTTCCCTTGCTCC+TGG 0.322466 1_1:+62978953 Msa0034980:CDS
GGGTTGGTTGTGGTGGCAGA+TGG 0.326166 1_1:-62978878 None:intergenic
CAGACTTGTTGAGGAAGAAT+TGG 0.330744 1_1:+62979627 Msa0034980:CDS
AGTGCATTGGACAAGAAGTA+TGG 0.341837 1_1:+62979436 Msa0034980:CDS
AGGAAGAATTGGAGAGGGAG+AGG 0.353596 1_1:+62979638 Msa0034980:CDS
AATTGGAGAGGGAGAGGGCT+GGG 0.371112 1_1:+62979644 Msa0034980:CDS
GAAGGATCAGGAATGGTTCC+TGG 0.374359 1_1:+62980057 Msa0034980:CDS
GGTGCATACCGTTGTCCATT+TGG 0.375191 1_1:-62980012 None:intergenic
GAGAGGGAGAGGGCTGGGGC+TGG 0.382302 1_1:+62979649 Msa0034980:CDS
GTTGAAGAAGAGTGGGAAGA+AGG 0.405733 1_1:+62980039 Msa0034980:CDS
TCTTCAACCCCACGGTCCTT+AGG 0.407296 1_1:-62979537 None:intergenic
ATGAACAGGGCCACTCTTCA+AGG 0.407496 1_1:+62979472 Msa0034980:CDS
AGACGCAGATGGCGGTCAAC+AGG 0.412382 1_1:-62980117 None:intergenic
TGGGGAAGGGTTGGTTGTGG+TGG 0.412548 1_1:-62978885 None:intergenic
TTGGACAAGAAGTATGGAAA+TGG 0.417128 1_1:+62979442 Msa0034980:CDS
CTGATGGTAAGAGAACAAAT+TGG 0.417933 1_1:+62979590 Msa0034980:CDS
ATTGTTGTGCATTTCTCTGT+TGG 0.428142 1_1:+62979932 Msa0034980:CDS
GAAGAGTGGGAAGAAGGATC+AGG 0.432033 1_1:+62980045 Msa0034980:CDS
TCCCACTCTTCTTCAACAAA+AGG 0.434809 1_1:-62980033 None:intergenic
GGCTGGACCCTCTCAGCCAC+AGG 0.444725 1_1:+62979666 Msa0034980:CDS
GTCCTTAGGTCATGCTTCAC+TGG 0.450996 1_1:-62979523 None:intergenic
ACCGCCATCTGCGTCTTGAA+TGG 0.454583 1_1:+62980124 Msa0034980:CDS
CAATTTGTTCTCTTACCATC+AGG 0.458211 1_1:-62979589 None:intergenic
TGGACAAGAAGTATGGAAAT+GGG 0.460782 1_1:+62979443 Msa0034980:CDS
AATAACATTGGGCCTCCAAA+TGG 0.464203 1_1:+62979997 Msa0034980:CDS
AAAATACCACTCCTGGTCTC+TGG 0.466296 1_1:-62979410 None:intergenic
GAATTGGAGAGGGAGAGGGC+TGG 0.467265 1_1:+62979643 Msa0034980:CDS
CAAGGGTACTGGAAAGCTAC+TGG 0.470409 1_1:+62979490 Msa0034980:CDS
GGGCCACTCTTCAAGGGTAC+TGG 0.478484 1_1:+62979479 Msa0034980:CDS
ATTTCTCTGTTGGATGGAGC+AGG 0.479878 1_1:+62979942 Msa0034980:CDS
TTGTGCATTTCTCTGTTGGA+TGG 0.481549 1_1:+62979936 Msa0034980:CDS
TGATGGTAAGAGAACAAATT+GGG 0.487496 1_1:+62979591 Msa0034980:CDS
GAGTGGGGAAGGGTTGGTTG+TGG 0.492703 1_1:-62978888 None:intergenic
CAGGAGCAAGGGAAGTTGGT+GGG 0.503619 1_1:-62978952 None:intergenic
ATTGGAGAGGGAGAGGGCTG+GGG 0.513068 1_1:+62979645 Msa0034980:CDS
TTCTCTTACCATCAGGAGCA+CGG 0.519212 1_1:-62979582 None:intergenic
AGGAAGAAATCATGTTGTGC+AGG 0.520713 1_1:+62980170 Msa0034980:CDS
AAGGATCAGGAATGGTTCCT+GGG 0.522130 1_1:+62980058 Msa0034980:CDS
ACTGAAACTGTGAGTGGGGA+AGG 0.523145 1_1:-62978899 None:intergenic
AACTGTGAGTGGGGAAGGGT+TGG 0.526120 1_1:-62978894 None:intergenic
GGAAGAATTGGAGAGGGAGA+GGG 0.531584 1_1:+62979639 Msa0034980:CDS
GCCTTCTGCTTCTGCTTCTG+CGG 0.532660 1_1:+62978928 Msa0034980:CDS
GCATACCGTTGTCCATTTGG+AGG 0.534396 1_1:-62980009 None:intergenic
AAACCAGGAGCAAGGGAAGT+TGG 0.539842 1_1:-62978956 None:intergenic
GGGGCTGAGCCTGTGAGTAA+TGG 0.540169 1_1:+62980078 Msa0034980:CDS
AGCAATAGCATCAAATCTGA+AGG 0.541393 1_1:-62979044 None:intergenic
ATGACAAGTTCTTCATCAGT+GGG 0.542348 1_1:-62978989 None:intergenic
AATATATGTTCTACTTCTCA+AGG 0.542782 1_1:-62981593 Msa0034990:intron
GCCGCAGAAGCAGAAGCAGA+AGG 0.544079 1_1:-62978929 None:intergenic
TGTTTCACAAGAATAACATT+GGG 0.544352 1_1:+62979986 Msa0034980:CDS
TGTTGAGGAAGAATTGGAGA+GGG 0.544892 1_1:+62979633 Msa0034980:CDS
GAAGCAGAAGCAGAAGGCGA+TGG 0.547423 1_1:-62978923 None:intergenic
CATAGCGGCCGTGCTCCTGA+TGG 0.551844 1_1:+62979574 Msa0034980:CDS
AAGGCTGAAGACCAGAGACC+AGG 0.556150 1_1:+62979399 Msa0034980:CDS
GTGTTTCACAAGAATAACAT+TGG 0.558703 1_1:+62979985 Msa0034980:CDS
AATCTCACCTGTGGCTGAGA+GGG 0.561129 1_1:-62979673 None:intergenic
TTACTCACAGGCTCAGCCCC+AGG 0.568758 1_1:-62980075 None:intergenic
GAAACCTAAAACCAGGAGCA+AGG 0.569063 1_1:-62978964 None:intergenic
GTTCACAGCTTGGGTTTGTG+TGG 0.578854 1_1:+62981547 Msa0034980:intron
AATGACAAGTTCTTCATCAG+TGG 0.585466 1_1:-62978990 None:intergenic
CCAGGAGCAAGGGAAGTTGG+TGG 0.586031 1_1:-62978953 None:intergenic
GGTGGAGTTTCATGCAGTGA+AGG 0.588527 1_1:+62980150 Msa0034980:CDS
TTGTTGAGGAAGAATTGGAG+AGG 0.590719 1_1:+62979632 Msa0034980:CDS
AAGCATGACCTAAGGACCGT+GGG 0.591696 1_1:+62979529 Msa0034980:CDS
AAACCTAAAACCAGGAGCAA+GGG 0.592028 1_1:-62978963 None:intergenic
GTCCAGTGAAGCATGACCTA+AGG 0.593027 1_1:+62979521 Msa0034980:CDS
CATTCCATTCAAGACGCAGA+TGG 0.593295 1_1:-62980128 None:intergenic
CGTGGGGTTGAAGAAGACTC+TGG 0.595548 1_1:+62979546 Msa0034980:CDS
CTGAAACTGTGAGTGGGGAA+GGG 0.604955 1_1:-62978898 None:intergenic
TTTCCAGTACCCTTGAAGAG+TGG 0.605704 1_1:-62979482 None:intergenic
AGGAGCAAGGGAAGTTGGTG+GGG 0.605772 1_1:-62978951 None:intergenic
TCTCTGTTGGATGGAGCAGG+AGG 0.606822 1_1:+62979945 Msa0034980:CDS
CTCACAGGACCATTACTCAC+AGG 0.609740 1_1:-62980087 None:intergenic
ATGGTACTGAAACTGTGAGT+GGG 0.611208 1_1:-62978904 None:intergenic
GCAATAGCATCAAATCTGAA+GGG 0.612782 1_1:-62979043 None:intergenic
AAATCTCACCTGTGGCTGAG+AGG 0.618188 1_1:-62979674 None:intergenic
GGACAAGAAGTATGGAAATG+GGG 0.619017 1_1:+62979444 Msa0034980:CDS
AGTAATGGTCCTGTGAGTAA+TGG 0.621405 1_1:+62980093 Msa0034980:CDS
TATCTACAAGAGTGAACCAT+GGG 0.622125 1_1:+62979075 Msa0034980:CDS
GCATGAGTACAGACTTGTTG+AGG 0.623966 1_1:+62979618 Msa0034980:CDS
GTGGGAAGAAGGATCAGGAA+TGG 0.625194 1_1:+62980050 Msa0034980:CDS
GACAAGAAGTATGGAAATGG+GGG 0.626774 1_1:+62979445 Msa0034980:CDS
TGAACAGGGCCACTCTTCAA+GGG 0.626821 1_1:+62979473 Msa0034980:CDS
GTGGTTTGTGTGCTCACAAG+AGG 0.632223 1_1:+62981566 Msa0034980:CDS
CATTTATTACCTGAAACGCA+AGG 0.633311 1_1:+62979009 Msa0034980:CDS
GTGGGGTGAAACCTAAAACC+AGG 0.639047 1_1:-62978971 None:intergenic
TCAACAGGACCATTACTCAC+AGG 0.640806 1_1:-62980102 None:intergenic
CTGCGTCTTGAATGGAATGG+TGG 0.648509 1_1:+62980132 Msa0034980:CDS
TCCATTCAAGACGCAGATGG+CGG 0.648525 1_1:-62980125 None:intergenic
TGAAGACCAGAGACCAGGAG+TGG 0.658962 1_1:+62979404 Msa0034980:CDS
AGGATCAGGAATGGTTCCTG+GGG 0.666000 1_1:+62980059 Msa0034980:CDS
GAAGCATGACCTAAGGACCG+TGG 0.670328 1_1:+62979528 Msa0034980:CDS
CATCTGCGTCTTGAATGGAA+TGG 0.673297 1_1:+62980129 Msa0034980:CDS
CAGAGTCTTCTTCAACCCCA+CGG 0.674792 1_1:-62979545 None:intergenic
ATATCTACAAGAGTGAACCA+TGG 0.689492 1_1:+62979074 Msa0034980:CDS
TTGGGCCTCCAAATGGACAA+CGG 0.705935 1_1:+62980004 Msa0034980:CDS
TGGTACTGAAACTGTGAGTG+GGG 0.714391 1_1:-62978903 None:intergenic
AAGACTCTGGTGTTTCATAG+CGG 0.718209 1_1:+62979559 Msa0034980:CDS
GATGGTACTGAAACTGTGAG+TGG 0.721748 1_1:-62978905 None:intergenic
TGACAAGTTCTTCATCAGTG+GGG 0.741273 1_1:-62978988 None:intergenic
AGCATGACCTAAGGACCGTG+GGG 0.767258 1_1:+62979530 Msa0034980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTAATTATTGAAA+TGG + chr1_1:62979238-62979257 Msa0034980:intron 10.0%
!!! TTGTTTTTAATTATTGAAAT+GGG + chr1_1:62979239-62979258 Msa0034980:intron 10.0%
!!! TTTTCAAAGTTTATTTTTTC+TGG + chr1_1:62979171-62979190 Msa0034980:intron 15.0%
!!! TTTCAAAGTTTATTTTTTCT+GGG + chr1_1:62979172-62979191 Msa0034980:intron 15.0%
!!! TTATCTTGGTTAAATTTTAA+TGG + chr1_1:62979268-62979287 Msa0034980:intron 15.0%
!!! TATCTTGGTTAAATTTTAAT+GGG + chr1_1:62979269-62979288 Msa0034980:intron 15.0%
!!! TAGTTTTTTATGATGATTTT+AGG + chr1_1:62979305-62979324 Msa0034980:intron 15.0%
!!! AGTTTTTTATGATGATTTTA+GGG + chr1_1:62979306-62979325 Msa0034980:intron 15.0%
!!! TAGCATTATTTGTTTTTATT+CGG + chr1_1:62980449-62980468 Msa0034980:intron 15.0%
!!! TCTCAATTTTTGTTTGATAA+AGG + chr1_1:62979143-62979162 Msa0034980:intron 20.0%
!!! TTTAATTTAGGTTAACGTTA+GGG + chr1_1:62979203-62979222 Msa0034980:intron 20.0%
!!! AATTTTGTTTAGATAAGTCA+AGG + chr1_1:62979380-62979399 Msa0034980:intron 20.0%
!! TAAGTAACAATAGACAATTT+GGG - chr1_1:62979835-62979854 None:intergenic 20.0%
!! TTAAGTAACAATAGACAATT+TGG - chr1_1:62979836-62979855 None:intergenic 20.0%
!! AAAAGAAGAAAATACATAAC+TGG - chr1_1:62980489-62980508 None:intergenic 20.0%
!! AAAAAAGTAAAATTCATGAC+CGG + chr1_1:62980536-62980555 Msa0034980:intron 20.0%
!!! TCTATCAGTTTAAAATATGA+TGG + chr1_1:62981514-62981533 Msa0034980:intron 20.0%
!! GTTTAATTTAGGTTAACGTT+AGG + chr1_1:62979202-62979221 Msa0034980:intron 25.0%
! GTTTAATGTGTTAATGTGAA+TGG + chr1_1:62979347-62979366 Msa0034980:intron 25.0%
! AACACAAAATCATACAGTTT+AGG - chr1_1:62979724-62979743 None:intergenic 25.0%
!! TAAACTGTATGATTTTGTGT+TGG + chr1_1:62979723-62979742 Msa0034980:intron 25.0%
! CATTGTTATATTATTACAGC+TGG + chr1_1:62979903-62979922 Msa0034980:intron 25.0%
! TGTTTCACAAGAATAACATT+GGG + chr1_1:62979986-62980005 Msa0034980:CDS 25.0%
! GTGAAAAAGTAGTTGAAATA+TGG + chr1_1:62980356-62980375 Msa0034980:intron 25.0%
!!! TCAAACTCATAAATTTGCTA+AGG + chr1_1:62980411-62980430 Msa0034980:intron 25.0%
!!! CAAACTCATAAATTTGCTAA+GGG + chr1_1:62980412-62980431 Msa0034980:intron 25.0%
! NNNAGTTATCAAGTAGTTTG+AGG + chr1_1:62980669-62980688 Msa0034980:intron 25.0%
! NNAGTTATCAAGTAGTTTGA+GGG + chr1_1:62980670-62980689 Msa0034980:intron 25.0%
! TAAGGTAAATATTAGGTCTA+TGG - chr1_1:62980758-62980777 Msa0034990:three_prime_UTR 25.0%
! ATTTAGTGTATGATGTAACA+AGG - chr1_1:62980880-62980899 Msa0034990:intron 25.0%
! TATTTGTAGCAAAATTATCC+AGG + chr1_1:62980971-62980990 Msa0034980:intron 25.0%
! ATTTGTAGCAAAATTATCCA+GGG + chr1_1:62980972-62980991 Msa0034980:intron 25.0%
! TATTATAATCTAACTGCAAC+AGG + chr1_1:62981276-62981295 Msa0034980:intron 25.0%
!!! TGGGCTGTTTTGTTTAATTT+AGG + chr1_1:62979191-62979210 Msa0034980:intron 30.0%
!!! GAAATGGGTTTTGTTTATCT+TGG + chr1_1:62979254-62979273 Msa0034980:intron 30.0%
TAATGTGTTAATGTGAATGG+TGG + chr1_1:62979350-62979369 Msa0034980:intron 30.0%
TGATGGTAAGAGAACAAATT+GGG + chr1_1:62979591-62979610 Msa0034980:CDS 30.0%
AATTTGTAAAATCTCACCTG+TGG - chr1_1:62979685-62979704 None:intergenic 30.0%
! ACAATAGACAATTTGGGTTT+GGG - chr1_1:62979829-62979848 None:intergenic 30.0%
! AACAATAGACAATTTGGGTT+TGG - chr1_1:62979830-62979849 None:intergenic 30.0%
GTGTTTCACAAGAATAACAT+TGG + chr1_1:62979985-62980004 Msa0034980:CDS 30.0%
!!! ACTTTTTCACAAACACGTAA+TGG - chr1_1:62980346-62980365 None:intergenic 30.0%
!! TCATAAATTTGCTAAGGGAT+TGG + chr1_1:62980417-62980436 Msa0034980:intron 30.0%
!! CATAAATTTGCTAAGGGATT+GGG + chr1_1:62980418-62980437 Msa0034980:intron 30.0%
GTAAATATTAGGTCTATGGT+AGG - chr1_1:62980754-62980773 Msa0034990:three_prime_UTR 30.0%
AGGTGGATAAGGTAAATATT+AGG - chr1_1:62980765-62980784 Msa0034990:exon 30.0%
TCAAATTCTTGTTGGCAATA+AGG - chr1_1:62980785-62980804 Msa0034990:CDS 30.0%
AGATTGCATCAAATTCTTGT+TGG - chr1_1:62980793-62980812 Msa0034990:CDS 30.0%
TTTGATGCAATCTTGATTAG+TGG + chr1_1:62980800-62980819 Msa0034980:intron 30.0%
AATATTAGATGTCAGCACTA+AGG + chr1_1:62980923-62980942 Msa0034980:intron 30.0%
!! TCTTTTGTTATAGCAATGCT+TGG - chr1_1:62981010-62981029 Msa0034990:intron 30.0%
!!! ATTTAGTTTTTTTTGGCAGC+TGG - chr1_1:62981257-62981276 Msa0034990:intron 30.0%
AACATGAAATCTTGTAGTGT+TGG - chr1_1:62981302-62981321 Msa0034990:intron 30.0%
ATGACAAGTTCTTCATCAGT+GGG - chr1_1:62978992-62979011 None:intergenic 35.0%
AATGACAAGTTCTTCATCAG+TGG - chr1_1:62978993-62979012 None:intergenic 35.0%
CATTTATTACCTGAAACGCA+AGG + chr1_1:62979009-62979028 Msa0034980:CDS 35.0%
GCAATAGCATCAAATCTGAA+GGG - chr1_1:62979046-62979065 None:intergenic 35.0%
AGCAATAGCATCAAATCTGA+AGG - chr1_1:62979047-62979066 None:intergenic 35.0%
ATATCTACAAGAGTGAACCA+TGG + chr1_1:62979074-62979093 Msa0034980:CDS 35.0%
TATCTACAAGAGTGAACCAT+GGG + chr1_1:62979075-62979094 Msa0034980:CDS 35.0%
TTCTAACCAAAAAGATCCCA+TGG - chr1_1:62979094-62979113 None:intergenic 35.0%
! ATTTAGGTTAACGTTAGGGT+TGG + chr1_1:62979207-62979226 Msa0034980:intron 35.0%
! TTTAGGTTAACGTTAGGGTT+GGG + chr1_1:62979208-62979227 Msa0034980:intron 35.0%
!!! GTGGTATTTTTTCAGTGCAT+TGG + chr1_1:62979423-62979442 Msa0034980:CDS 35.0%
! TTGGACAAGAAGTATGGAAA+TGG + chr1_1:62979442-62979461 Msa0034980:CDS 35.0%
! TGGACAAGAAGTATGGAAAT+GGG + chr1_1:62979443-62979462 Msa0034980:CDS 35.0%
! CAATTTGTTCTCTTACCATC+AGG - chr1_1:62979592-62979611 None:intergenic 35.0%
CTGATGGTAAGAGAACAAAT+TGG + chr1_1:62979590-62979609 Msa0034980:CDS 35.0%
!! GAAGCATTGTTGTTTATACG+TGG + chr1_1:62979801-62979820 Msa0034980:intron 35.0%
ATTGTTGTGCATTTCTCTGT+TGG + chr1_1:62979932-62979951 Msa0034980:CDS 35.0%
! ACCTTTTGTTGAAGAAGAGT+GGG + chr1_1:62980032-62980051 Msa0034980:CDS 35.0%
GAAATATGGAAAGTTGCTGT+CGG + chr1_1:62980370-62980389 Msa0034980:intron 35.0%
GGGAGAAAACATAATCTGTA+TGG + chr1_1:62980691-62980710 Msa0034980:intron 35.0%
CTTGCATTCATTACTTACTC+AGG - chr1_1:62980730-62980749 Msa0034990:three_prime_UTR 35.0%
AATTCTTGTTGGCAATAAGG+TGG - chr1_1:62980782-62980801 Msa0034990:exon 35.0%
CTTGGATGTATTAATATCCC+TGG - chr1_1:62980992-62981011 Msa0034990:intron 35.0%
GTGATATGCTCTTATTACAG+AGG - chr1_1:62981215-62981234 Msa0034990:CDS 35.0%
! TGTAGCTTTTGCCAAAATCA+CGG + chr1_1:62981355-62981374 Msa0034980:intron 35.0%
! ATGGTACTGAAACTGTGAGT+GGG - chr1_1:62978907-62978926 None:intergenic 40.0%
AAACCTAAAACCAGGAGCAA+GGG - chr1_1:62978966-62978985 None:intergenic 40.0%
TGACAAGTTCTTCATCAGTG+GGG - chr1_1:62978991-62979010 None:intergenic 40.0%
! AGTGAACCATGGGATCTTTT+TGG + chr1_1:62979085-62979104 Msa0034980:CDS 40.0%
TGTGTTAATGTGAATGGTGG+TGG + chr1_1:62979353-62979372 Msa0034980:intron 40.0%
CACTGAAAAAATACCACTCC+TGG - chr1_1:62979420-62979439 None:intergenic 40.0%
AGTGCATTGGACAAGAAGTA+TGG + chr1_1:62979436-62979455 Msa0034980:CDS 40.0%
! GGACAAGAAGTATGGAAATG+GGG + chr1_1:62979444-62979463 Msa0034980:CDS 40.0%
! GACAAGAAGTATGGAAATGG+GGG + chr1_1:62979445-62979464 Msa0034980:CDS 40.0%
AAGACTCTGGTGTTTCATAG+CGG + chr1_1:62979559-62979578 Msa0034980:CDS 40.0%
!! CAGACTTGTTGAGGAAGAAT+TGG + chr1_1:62979627-62979646 Msa0034980:CDS 40.0%
TTGTTGAGGAAGAATTGGAG+AGG + chr1_1:62979632-62979651 Msa0034980:CDS 40.0%
TGTTGAGGAAGAATTGGAGA+GGG + chr1_1:62979633-62979652 Msa0034980:CDS 40.0%
TGTTGTCGTTGCAGTTACTT+AGG + chr1_1:62979748-62979767 Msa0034980:intron 40.0%
GTTGTCGTTGCAGTTACTTA+GGG + chr1_1:62979749-62979768 Msa0034980:intron 40.0%
TTGTGCATTTCTCTGTTGGA+TGG + chr1_1:62979936-62979955 Msa0034980:CDS 40.0%
AATAACATTGGGCCTCCAAA+TGG + chr1_1:62979997-62980016 Msa0034980:CDS 40.0%
! CACCTTTTGTTGAAGAAGAG+TGG + chr1_1:62980031-62980050 Msa0034980:CDS 40.0%
TCCCACTCTTCTTCAACAAA+AGG - chr1_1:62980036-62980055 None:intergenic 40.0%
AGTAATGGTCCTGTGAGTAA+TGG + chr1_1:62980093-62980112 Msa0034980:CDS 40.0%
AGGAAGAAATCATGTTGTGC+AGG + chr1_1:62980170-62980189 Msa0034980:CDS 40.0%
AAATTCATGACCGGAATGTC+CGG + chr1_1:62980545-62980564 Msa0034980:intron 40.0%
TGTTGGCAATAAGGTGGATA+AGG - chr1_1:62980776-62980795 Msa0034990:exon 40.0%
GAGACATTTACAAACCTGGT+GGG - chr1_1:62980854-62980873 Msa0034990:CDS 40.0%
AGAGACATTTACAAACCTGG+TGG - chr1_1:62980855-62980874 Msa0034990:CDS 40.0%
TTGTGCGTGCTTGATTTCAA+GGG + chr1_1:62981032-62981051 Msa0034980:intron 40.0%
TGATTTCAAGGGCTTGAATG+TGG + chr1_1:62981043-62981062 Msa0034980:intron 40.0%
GATTTCAAGGGCTTGAATGT+GGG + chr1_1:62981044-62981063 Msa0034980:intron 40.0%
ATTTCAAGGGCTTGAATGTG+GGG + chr1_1:62981045-62981064 Msa0034980:intron 40.0%
! ACAGTTTGGTACCGTGATTT+TGG - chr1_1:62981369-62981388 Msa0034990:intron 40.0%
AAAATCACGGTACCAAACTG+TGG + chr1_1:62981368-62981387 Msa0034980:intron 40.0%
! GTTTTGTCAGAACCACAGTT+TGG - chr1_1:62981383-62981402 Msa0034990:intron 40.0%
! TTTGAGTTCTGTTCACAGCT+TGG + chr1_1:62981537-62981556 Msa0034980:intron 40.0%
TTGAGTTCTGTTCACAGCTT+GGG + chr1_1:62981538-62981557 Msa0034980:intron 40.0%
! TGGTACTGAAACTGTGAGTG+GGG - chr1_1:62978906-62978925 None:intergenic 45.0%
! GATGGTACTGAAACTGTGAG+TGG - chr1_1:62978908-62978927 None:intergenic 45.0%
GAAACCTAAAACCAGGAGCA+AGG - chr1_1:62978967-62978986 None:intergenic 45.0%
TACCTGAAACGCAAGGTTTC+TGG + chr1_1:62979016-62979035 Msa0034980:CDS 45.0%
TTCCAGAAACCTTGCGTTTC+AGG - chr1_1:62979021-62979040 None:intergenic 45.0%
AAAATACCACTCCTGGTCTC+TGG - chr1_1:62979413-62979432 None:intergenic 45.0%
TTTCCAGTACCCTTGAAGAG+TGG - chr1_1:62979485-62979504 None:intergenic 45.0%
TTCTCTTACCATCAGGAGCA+CGG - chr1_1:62979585-62979604 None:intergenic 45.0%
!! GCATGAGTACAGACTTGTTG+AGG + chr1_1:62979618-62979637 Msa0034980:CDS 45.0%
!! GTTTGCTATGTGCTGCAATG+TGG + chr1_1:62979879-62979898 Msa0034980:intron 45.0%
ATTTCTCTGTTGGATGGAGC+AGG + chr1_1:62979942-62979961 Msa0034980:CDS 45.0%
GTTGAAGAAGAGTGGGAAGA+AGG + chr1_1:62980039-62980058 Msa0034980:CDS 45.0%
AAGGATCAGGAATGGTTCCT+GGG + chr1_1:62980058-62980077 Msa0034980:CDS 45.0%
TCAACAGGACCATTACTCAC+AGG - chr1_1:62980105-62980124 None:intergenic 45.0%
CATTCCATTCAAGACGCAGA+TGG - chr1_1:62980131-62980150 None:intergenic 45.0%
CATCTGCGTCTTGAATGGAA+TGG + chr1_1:62980129-62980148 Msa0034980:CDS 45.0%
! TCGTTCTCTCCCAGTCTTTT+TGG + chr1_1:62980200-62980219 Msa0034980:intron 45.0%
! CGTTCTCTCCCAGTCTTTTT+GGG + chr1_1:62980201-62980220 Msa0034980:intron 45.0%
GATACGCACCCAAAAAGACT+GGG - chr1_1:62980212-62980231 None:intergenic 45.0%
AGATACGCACCCAAAAAGAC+TGG - chr1_1:62980213-62980232 None:intergenic 45.0%
TACAAACCTGGTGGGAACAT+GGG - chr1_1:62980846-62980865 Msa0034990:CDS 45.0%
TTACAAACCTGGTGGGAACA+TGG - chr1_1:62980847-62980866 Msa0034990:CDS 45.0%
GCGAGAGACATTTACAAACC+TGG - chr1_1:62980858-62980877 Msa0034990:CDS 45.0%
CTTGTGCGTGCTTGATTTCA+AGG + chr1_1:62981031-62981050 Msa0034980:intron 45.0%
GTGGGGAAGAATAGCAATAG+CGG + chr1_1:62981062-62981081 Msa0034980:intron 45.0%
! TCTTATTACAGAGGCGCACA+TGG - chr1_1:62981206-62981225 Msa0034990:CDS 45.0%
GCATGTTTGGATTGACAGTG+AGG - chr1_1:62981409-62981428 Msa0034990:intron 45.0%
CCATCAGCTTAGTGCATGTT+TGG - chr1_1:62981422-62981441 Msa0034990:intron 45.0%
CCAAACATGCACTAAGCTGA+TGG + chr1_1:62981419-62981438 Msa0034980:intron 45.0%
!!! TTATAATATTTAGTTTTTTT+TGG - chr1_1:62981264-62981283 Msa0034990:intron 5.0%
CTGAAACTGTGAGTGGGGAA+GGG - chr1_1:62978901-62978920 None:intergenic 50.0%
ACTGAAACTGTGAGTGGGGA+AGG - chr1_1:62978902-62978921 None:intergenic 50.0%
AAACCAGGAGCAAGGGAAGT+TGG - chr1_1:62978959-62978978 None:intergenic 50.0%
!! CTTCCCTTGCTCCTGGTTTT+AGG + chr1_1:62978960-62978979 Msa0034980:CDS 50.0%
GTGGGGTGAAACCTAAAACC+AGG - chr1_1:62978974-62978993 None:intergenic 50.0%
! AGAAGTATGGAAATGGGGGC+AGG + chr1_1:62979449-62979468 Msa0034980:CDS 50.0%
AAATGGGGGCAGGATGAACA+GGG + chr1_1:62979459-62979478 Msa0034980:CDS 50.0%
ATGAACAGGGCCACTCTTCA+AGG + chr1_1:62979472-62979491 Msa0034980:CDS 50.0%
TGAACAGGGCCACTCTTCAA+GGG + chr1_1:62979473-62979492 Msa0034980:CDS 50.0%
!! CAAGGGTACTGGAAAGCTAC+TGG + chr1_1:62979490-62979509 Msa0034980:CDS 50.0%
GTCCAGTGAAGCATGACCTA+AGG + chr1_1:62979521-62979540 Msa0034980:CDS 50.0%
GTCCTTAGGTCATGCTTCAC+TGG - chr1_1:62979526-62979545 None:intergenic 50.0%
AAGCATGACCTAAGGACCGT+GGG + chr1_1:62979529-62979548 Msa0034980:CDS 50.0%
CAGAGTCTTCTTCAACCCCA+CGG - chr1_1:62979548-62979567 None:intergenic 50.0%
AGGAAGAATTGGAGAGGGAG+AGG + chr1_1:62979638-62979657 Msa0034980:CDS 50.0%
GGAAGAATTGGAGAGGGAGA+GGG + chr1_1:62979639-62979658 Msa0034980:CDS 50.0%
AATCTCACCTGTGGCTGAGA+GGG - chr1_1:62979676-62979695 None:intergenic 50.0%
AAATCTCACCTGTGGCTGAG+AGG - chr1_1:62979677-62979696 None:intergenic 50.0%
TTGGGCCTCCAAATGGACAA+CGG + chr1_1:62980004-62980023 Msa0034980:CDS 50.0%
GCATACCGTTGTCCATTTGG+AGG - chr1_1:62980012-62980031 None:intergenic 50.0%
GGTGCATACCGTTGTCCATT+TGG - chr1_1:62980015-62980034 None:intergenic 50.0%
GAAGAGTGGGAAGAAGGATC+AGG + chr1_1:62980045-62980064 Msa0034980:CDS 50.0%
GTGGGAAGAAGGATCAGGAA+TGG + chr1_1:62980050-62980069 Msa0034980:CDS 50.0%
GAAGGATCAGGAATGGTTCC+TGG + chr1_1:62980057-62980076 Msa0034980:CDS 50.0%
AGGATCAGGAATGGTTCCTG+GGG + chr1_1:62980059-62980078 Msa0034980:CDS 50.0%
CTCACAGGACCATTACTCAC+AGG - chr1_1:62980090-62980109 None:intergenic 50.0%
TCCATTCAAGACGCAGATGG+CGG - chr1_1:62980128-62980147 None:intergenic 50.0%
CTGCGTCTTGAATGGAATGG+TGG + chr1_1:62980132-62980151 Msa0034980:CDS 50.0%
GGTGGAGTTTCATGCAGTGA+AGG + chr1_1:62980150-62980169 Msa0034980:CDS 50.0%
! TTTTGGCAGCTGGACAAGAG+AGG - chr1_1:62981247-62981266 Msa0034990:intron 50.0%
GTTCACAGCTTGGGTTTGTG+TGG + chr1_1:62981547-62981566 Msa0034980:intron 50.0%
! GTGGTTTGTGTGCTCACAAG+AGG + chr1_1:62981566-62981585 Msa0034980:CDS 50.0%
GGGGGTGGAGGAAGTAAAAG+AGG - chr1_1:62978860-62978879 None:intergenic 55.0%
TTGGTTGTGGTGGCAGATGG+GGG - chr1_1:62978878-62978897 None:intergenic 55.0%
GTTGGTTGTGGTGGCAGATG+GGG - chr1_1:62978879-62978898 None:intergenic 55.0%
! GGTTGGTTGTGGTGGCAGAT+GGG - chr1_1:62978880-62978899 None:intergenic 55.0%
AACTGTGAGTGGGGAAGGGT+TGG - chr1_1:62978897-62978916 None:intergenic 55.0%
GAAGCAGAAGCAGAAGGCGA+TGG - chr1_1:62978926-62978945 None:intergenic 55.0%
GCCTTCTGCTTCTGCTTCTG+CGG + chr1_1:62978928-62978947 Msa0034980:CDS 55.0%
!! AGGAGCAAGGGAAGTTGGTG+GGG - chr1_1:62978954-62978973 None:intergenic 55.0%
! CAGGAGCAAGGGAAGTTGGT+GGG - chr1_1:62978955-62978974 None:intergenic 55.0%
AAGGCTGAAGACCAGAGACC+AGG + chr1_1:62979399-62979418 Msa0034980:CDS 55.0%
TGAAGACCAGAGACCAGGAG+TGG + chr1_1:62979404-62979423 Msa0034980:CDS 55.0%
GAAATGGGGGCAGGATGAAC+AGG + chr1_1:62979458-62979477 Msa0034980:CDS 55.0%
GAAGCATGACCTAAGGACCG+TGG + chr1_1:62979528-62979547 Msa0034980:CDS 55.0%
AGCATGACCTAAGGACCGTG+GGG + chr1_1:62979530-62979549 Msa0034980:CDS 55.0%
TCTTCAACCCCACGGTCCTT+AGG - chr1_1:62979540-62979559 None:intergenic 55.0%
CGTGGGGTTGAAGAAGACTC+TGG + chr1_1:62979546-62979565 Msa0034980:CDS 55.0%
AATTGGAGAGGGAGAGGGCT+GGG + chr1_1:62979644-62979663 Msa0034980:CDS 55.0%
TCTCTGTTGGATGGAGCAGG+AGG + chr1_1:62979945-62979964 Msa0034980:CDS 55.0%
ACCGCCATCTGCGTCTTGAA+TGG + chr1_1:62980124-62980143 Msa0034980:CDS 55.0%
GGTGGGAACATGGGCAAAAG+AGG - chr1_1:62980837-62980856 Msa0034990:CDS 55.0%
! CTTTTGCCCATGTTCCCACC+AGG + chr1_1:62980837-62980856 Msa0034980:intron 55.0%
GGCGCACATGGAATCGTTCT+TGG - chr1_1:62981194-62981213 Msa0034990:CDS 55.0%
GCAGCTGGACAAGAGAGGTT+TGG - chr1_1:62981242-62981261 Msa0034990:intron 55.0%
!! GGGTTGGTTGTGGTGGCAGA+TGG - chr1_1:62978881-62978900 None:intergenic 60.0%
!! TGGGGAAGGGTTGGTTGTGG+TGG - chr1_1:62978888-62978907 None:intergenic 60.0%
!! GAGTGGGGAAGGGTTGGTTG+TGG - chr1_1:62978891-62978910 None:intergenic 60.0%
GCCGCAGAAGCAGAAGCAGA+AGG - chr1_1:62978932-62978951 None:intergenic 60.0%
CCAGGAGCAAGGGAAGTTGG+TGG - chr1_1:62978956-62978975 None:intergenic 60.0%
CCACCAACTTCCCTTGCTCC+TGG + chr1_1:62978953-62978972 Msa0034980:CDS 60.0%
! GGGCCACTCTTCAAGGGTAC+TGG + chr1_1:62979479-62979498 Msa0034980:CDS 60.0%
GAATTGGAGAGGGAGAGGGC+TGG + chr1_1:62979643-62979662 Msa0034980:CDS 60.0%
ATTGGAGAGGGAGAGGGCTG+GGG + chr1_1:62979645-62979664 Msa0034980:CDS 60.0%
TTACTCACAGGCTCAGCCCC+AGG - chr1_1:62980078-62980097 None:intergenic 60.0%
GGGGCTGAGCCTGTGAGTAA+TGG + chr1_1:62980078-62980097 Msa0034980:CDS 60.0%
! AGACGCAGATGGCGGTCAAC+AGG - chr1_1:62980120-62980139 None:intergenic 60.0%
GTTGTGGTGGCAGATGGGGG+TGG - chr1_1:62978875-62978894 None:intergenic 65.0%
CATAGCGGCCGTGCTCCTGA+TGG + chr1_1:62979574-62979593 Msa0034980:CDS 65.0%
GTGGTGGCAGATGGGGGTGG+AGG - chr1_1:62978872-62978891 None:intergenic 70.0%
GGCTGGACCCTCTCAGCCAC+AGG + chr1_1:62979666-62979685 Msa0034980:CDS 70.0%
GAGAGGGAGAGGGCTGGGGC+TGG + chr1_1:62979649-62979668 Msa0034980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62978842 62981605 62978842 ID=Msa0034980;Name=Msa0034980
chr1_1 mRNA 62978842 62981605 62978842 ID=Msa0034980-mRNA-1;Parent=Msa0034980;Name=Msa0034980-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.75|1|1|4|0|293
chr1_1 exon 62978842 62979106 62978842 ID=Msa0034980-mRNA-1:exon:19959;Parent=Msa0034980-mRNA-1
chr1_1 exon 62979392 62979687 62979392 ID=Msa0034980-mRNA-1:exon:19960;Parent=Msa0034980-mRNA-1
chr1_1 exon 62979922 62980191 62979922 ID=Msa0034980-mRNA-1:exon:19961;Parent=Msa0034980-mRNA-1
chr1_1 exon 62981555 62981605 62981555 ID=Msa0034980-mRNA-1:exon:19962;Parent=Msa0034980-mRNA-1
chr1_1 CDS 62978842 62979106 62978842 ID=Msa0034980-mRNA-1:cds;Parent=Msa0034980-mRNA-1
chr1_1 CDS 62979392 62979687 62979392 ID=Msa0034980-mRNA-1:cds;Parent=Msa0034980-mRNA-1
chr1_1 CDS 62979922 62980191 62979922 ID=Msa0034980-mRNA-1:cds;Parent=Msa0034980-mRNA-1
chr1_1 CDS 62981555 62981605 62981555 ID=Msa0034980-mRNA-1:cds;Parent=Msa0034980-mRNA-1
Gene Sequence

>Msa0034980

ATGGGTCACGAAGAACCTCTTTTACTTCCTCCACCCCCATCTGCCACCACAACCAACCCTTCCCCACTCACAGTTTCAGTACCATCGCCTTCTGCTTCTGCTTCTGCGGCCCCACCAACTTCCCTTGCTCCTGGTTTTAGGTTTCACCCCACTGATGAAGAACTTGTCATTTATTACCTGAAACGCAAGGTTTCTGGAAAACCCTTCAGATTTGATGCTATTGCTGAAGTTGATATCTACAAGAGTGAACCATGGGATCTTTTTGATAAGTCAAGGCTGAAGACCAGAGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGGGGCAGGATGAACAGGGCCACTCTTCAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCAGTGAAGCATGACCTAAGGACCGTGGGGTTGAAGAAGACTCTGGTGTTTCATAGCGGCCGTGCTCCTGATGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGACTTGTTGAGGAAGAATTGGAGAGGGAGAGGGCTGGGGCTGGACCCTCTCAGCCACAGCTGGTTAATCATTGTTGTGCATTTCTCTGTTGGATGGAGCAGGAGGCATTTGTGCTGTGTAGAGTGTTTCACAAGAATAACATTGGGCCTCCAAATGGACAACGGTATGCACCTTTTGTTGAAGAAGAGTGGGAAGAAGGATCAGGAATGGTTCCTGGGGCTGAGCCTGTGAGTAATGGTCCTGTGAGTAATGGTCCTGTTGACCGCCATCTGCGTCTTGAATGGAATGGTGGAGTTTCATGCAGTGAAGGAAGAAATCATGTTGTGCAGCTTGGGTTTGTGTGGTTTGTGTGCTCACAAGAGGAACACCTTGAGAAGTAG
Protein sequence

>Msa0034980

MGHEEPLLLPPPPSATTTNPSPLTVSVPSPSASASAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLFDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERERAGAGPSQPQLVNHCCAFLCWMEQEAFVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGSGMVPGAEPVSNGPVSNGPVDRHLRLEWNGGVSCSEGRNHVVQLGFVWFVCSQEEHLEK*