AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175850 MtrunA17_Chr1g0197351 99.378 482 3 0 1 482 1 482 0.0 998
Msa0175850 MtrunA17_Chr1g0197361 61.026 195 67 4 43 235 9 196 7.52e-74 243
Msa0175850 MtrunA17_Chr3g0092671 58.824 204 65 5 43 244 6 192 2.55e-73 241
Msa0175850 MtrunA17_Chr8g0364791 51.327 226 94 6 42 257 6 225 6.40e-67 221
Msa0175850 MtrunA17_Chr3g0130101 55.618 178 72 2 42 218 7 178 2.83e-65 214
Msa0175850 MtrunA17_Chr2g0309891 58.750 160 61 1 39 198 3 157 2.33e-62 206
Msa0175850 MtrunA17_Chr1g0201021 54.922 193 79 3 29 219 5 191 3.13e-62 212
Msa0175850 MtrunA17_Chr6g0481091 58.896 163 61 2 39 201 3 159 4.81e-61 199
Msa0175850 MtrunA17_Chr8g0384201 52.660 188 82 2 42 228 6 187 9.93e-61 206
Msa0175850 MtrunA17_Chr3g0109821 58.382 173 66 2 39 210 3 170 1.70e-60 209
Msa0175850 MtrunA17_Chr5g0433781 58.101 179 68 3 39 216 3 175 5.29e-59 205
Msa0175850 MtrunA17_Chr5g0405211 44.608 204 98 6 40 242 6 195 1.71e-53 183
Msa0175850 MtrunA17_Chr3g0128111 48.128 187 84 4 14 200 21 194 3.65e-53 179
Msa0175850 MtrunA17_Chr3g0128151 51.724 174 78 1 27 200 7 174 2.97e-52 186
Msa0175850 MtrunA17_Chr8g0372121 44.974 189 93 5 44 230 8 187 9.21e-52 177
Msa0175850 MtrunA17_Chr1g0200561 49.714 175 75 4 25 198 6 168 1.19e-51 178
Msa0175850 MtrunA17_Chr5g0400461 55.090 167 57 3 41 199 5 161 2.45e-51 177
Msa0175850 MtrunA17_Chr4g0018391 53.797 158 60 5 44 198 9 156 4.45e-51 177
Msa0175850 MtrunA17_Chr4g0017921 52.201 159 66 3 44 201 10 159 5.07e-51 177
Msa0175850 MtrunA17_Chr4g0056541 53.846 156 63 3 44 198 9 156 1.32e-50 176
Msa0175850 MtrunA17_Chr2g0309331 48.315 178 78 4 41 216 9 174 1.87e-50 175
Msa0175850 MtrunA17_Chr5g0428991 49.432 176 81 2 27 200 8 177 2.11e-50 181
Msa0175850 MtrunA17_Chr4g0042561 47.904 167 83 2 36 202 3 165 6.41e-50 171
Msa0175850 MtrunA17_Chr4g0047841 45.455 187 81 3 33 200 6 190 2.19e-48 169
Msa0175850 MtrunA17_Chr5g0398971 49.682 157 70 4 44 198 9 158 3.92e-48 169
Msa0175850 MtrunA17_Chr2g0318101 47.429 175 83 3 33 200 6 178 4.47e-48 169
Msa0175850 MtrunA17_Chr2g0318081 51.572 159 69 3 41 199 15 165 7.92e-48 168
Msa0175850 MtrunA17_Chr5g0417791 49.375 160 77 2 42 201 3 158 9.88e-48 165
Msa0175850 MtrunA17_Chr3g0124761 50.955 157 71 3 42 198 7 157 1.04e-47 166
Msa0175850 MtrunA17_Chr4g0054791 52.469 162 68 2 41 199 5 160 1.69e-47 166
Msa0175850 MtrunA17_Chr8g0346001 42.424 198 105 4 33 221 6 203 3.30e-47 169
Msa0175850 MtrunA17_Chr3g0091921 52.795 161 70 3 42 202 16 170 3.38e-47 165
Msa0175850 MtrunA17_Chr7g0252971 46.512 172 79 3 36 198 2 169 4.09e-47 166
Msa0175850 MtrunA17_Chr8g0359921 51.250 160 72 2 41 200 13 166 4.17e-47 166
Msa0175850 MtrunA17_Chr4g0060931 51.553 161 72 3 42 202 17 171 5.05e-47 166
Msa0175850 MtrunA17_Chr6g0484441 51.266 158 67 2 41 198 4 151 5.31e-47 165
Msa0175850 MtrunA17_Chr6g0453451 49.068 161 76 2 42 202 20 174 6.00e-46 162
Msa0175850 MtrunA17_Chr2g0316971 52.439 164 68 4 42 202 23 179 9.07e-46 164
Msa0175850 MtrunA17_Chr4g0076731 48.447 161 72 3 42 201 54 204 9.10e-46 165
Msa0175850 MtrunA17_Chr7g0253011 50.000 162 71 4 42 199 17 172 1.32e-45 163
Msa0175850 MtrunA17_Chr6g0461661 39.819 221 116 6 30 243 6 216 4.20e-45 162
Msa0175850 MtrunA17_Chr3g0139331 46.471 170 79 3 35 202 4 163 5.75e-45 160
Msa0175850 MtrunA17_Chr6g0453131 47.239 163 80 4 42 200 15 175 7.07e-45 161
Msa0175850 MtrunA17_Chr3g0130731 49.682 157 73 3 42 198 7 157 2.71e-44 157
Msa0175850 MtrunA17_Chr1g0183741 47.531 162 67 4 41 198 9 156 2.82e-44 157
Msa0175850 MtrunA17_Chr8g0361731 44.512 164 84 3 42 200 14 175 6.87e-44 159
Msa0175850 MtrunA17_Chr7g0214071 50.000 170 66 4 42 207 15 169 9.10e-44 154
Msa0175850 MtrunA17_Chr2g0326361 46.875 160 79 3 41 198 13 168 1.53e-43 156
Msa0175850 MtrunA17_Chr5g0417001 46.012 163 82 3 42 200 14 174 1.57e-43 158
Msa0175850 MtrunA17_Chr1g0147421 49.689 161 68 4 41 198 26 176 2.28e-43 157
Msa0175850 MtrunA17_Chr7g0261411 47.170 159 70 3 41 197 9 155 6.17e-43 153
Msa0175850 MtrunA17_Chr8g0384721 47.771 157 77 3 42 198 7 158 6.64e-43 153
Msa0175850 MtrunA17_Chr7g0263931 46.061 165 81 4 42 204 11 169 1.66e-42 153
Msa0175850 MtrunA17_Chr2g0312321 48.101 158 73 3 42 199 11 159 1.13e-41 150
Msa0175850 MtrunA17_Chr7g0217721 47.368 171 71 3 45 202 22 186 1.14e-40 149
Msa0175850 MtrunA17_Chr4g0038751 48.101 158 66 3 44 198 17 161 1.37e-40 147
Msa0175850 MtrunA17_Chr5g0442771 41.799 189 98 4 42 224 18 200 2.28e-40 147
Msa0175850 MtrunA17_Chr7g0217711 56.000 125 53 1 45 169 22 144 5.76e-40 142
Msa0175850 MtrunA17_Chr2g0311651 44.242 165 82 3 44 199 24 187 3.33e-39 144
Msa0175850 MtrunA17_Chr2g0311661 44.242 165 82 3 44 199 23 186 1.46e-38 142
Msa0175850 MtrunA17_Chr3g0144271 54.198 131 55 3 42 169 23 151 1.22e-36 140
Msa0175850 MtrunA17_Chr8g0385991 43.023 172 91 3 42 211 14 180 2.21e-36 134
Msa0175850 MtrunA17_Chr8g0345671 48.718 156 61 5 45 195 14 155 3.47e-36 138
Msa0175850 MtrunA17_Chr3g0131911 41.520 171 92 2 40 206 12 178 3.53e-33 125
Msa0175850 MtrunA17_Chr8g0345691 43.558 163 75 5 38 195 6 156 1.63e-32 128
Msa0175850 MtrunA17_Chr2g0321631 39.241 158 88 4 44 196 6 160 1.52e-31 121
Msa0175850 MtrunA17_Chr4g0026141 41.401 157 85 5 44 196 7 160 1.03e-30 119
Msa0175850 MtrunA17_Chr8g0345741 46.610 118 59 3 53 167 2 118 3.90e-30 115
Msa0175850 MtrunA17_Chr4g0050701 38.125 160 87 3 42 199 11 160 6.20e-29 112
Msa0175850 MtrunA17_Chr7g0266701 41.463 164 90 6 41 199 3 165 8.87e-29 114
Msa0175850 MtrunA17_Chr2g0321741 51.887 106 50 1 62 167 12 116 9.36e-29 116
Msa0175850 MtrunA17_Chr8g0345711 46.212 132 63 4 41 167 11 139 1.78e-28 110
Msa0175850 MtrunA17_Chr8g0345731 44.853 136 60 5 42 167 24 154 2.85e-27 107
Msa0175850 MtrunA17_Chr8g0345701 43.448 145 62 5 40 167 5 146 7.38e-27 106
Msa0175850 MtrunA17_Chr8g0345721 38.372 172 69 6 36 173 29 197 8.99e-27 107
Msa0175850 MtrunA17_Chr3g0113001 50.000 108 49 2 94 200 15 118 3.16e-25 105
Msa0175850 MtrunA17_Chr3g0113031 44.860 107 56 2 107 212 3 107 2.37e-21 93.6
Msa0175850 MtrunA17_Chr8g0384351 34.395 157 75 6 42 198 10 138 9.65e-21 89.7
Msa0175850 MtrunA17_Chr7g0243371 53.947 76 31 2 97 169 17 91 1.34e-19 84.3
Msa0175850 MtrunA17_Chr3g0130321 31.844 179 101 8 42 210 7 174 6.72e-17 79.3
Msa0175850 MtrunA17_Chr7g0251661 31.111 135 89 3 34 167 2 133 2.68e-16 76.3
Msa0175850 MtrunA17_Chr1g0194791 71.739 46 12 1 43 87 47 92 1.18e-15 72.8
Msa0175850 MtrunA17_Chr7g0251651 33.071 127 81 3 42 167 18 141 4.86e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175850 AT3G10480.1 47.485 497 181 17 1 476 1 438 1.24e-122 365
Msa0175850 AT3G10490.2 44.794 509 183 12 1 476 1 444 2.95e-121 362
Msa0175850 AT3G10480.2 47.082 497 182 17 1 476 1 437 6.53e-121 361
Msa0175850 AT3G10480.3 42.806 563 189 20 1 476 1 517 6.18e-112 341
Msa0175850 AT3G10490.1 63.223 242 60 4 1 233 1 222 2.90e-102 306
Msa0175850 AT5G04410.1 65.500 200 61 4 40 237 7 200 2.94e-85 273
Msa0175850 AT3G10500.1 66.286 175 52 2 40 213 7 175 2.74e-77 252
Msa0175850 AT3G10490.4 38.832 394 158 11 116 476 1 344 8.02e-66 216
Msa0175850 AT3G10490.3 38.832 394 158 11 116 476 1 344 8.02e-66 216
Msa0175850 AT3G17730.1 58.896 163 61 1 39 201 3 159 1.39e-62 204
Msa0175850 AT5G64060.1 45.382 249 124 3 40 287 4 241 2.02e-62 207
Msa0175850 AT1G34180.3 50.495 202 90 3 43 240 17 212 1.72e-60 205
Msa0175850 AT3G03200.1 61.875 160 56 1 39 198 3 157 5.48e-60 204
Msa0175850 AT1G34190.1 55.114 176 72 2 43 217 17 186 6.07e-60 206
Msa0175850 AT1G34180.1 50.495 202 90 3 43 240 17 212 1.39e-59 205
Msa0175850 AT5G17260.1 55.866 179 70 2 39 213 3 176 7.13e-59 201
Msa0175850 AT1G65910.1 58.537 164 62 1 39 202 3 160 9.09e-59 204
Msa0175850 AT1G34180.4 48.598 214 88 5 43 240 17 224 1.37e-58 200
Msa0175850 AT5G09330.5 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0175850 AT5G09330.2 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0175850 AT5G09330.4 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0175850 AT5G09330.3 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0175850 AT5G09330.1 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0175850 AT1G34180.2 48.598 214 88 5 43 240 17 224 1.18e-57 201
Msa0175850 AT1G54330.1 59.627 161 56 1 39 199 3 154 8.97e-56 188
Msa0175850 AT1G32870.2 57.225 173 67 3 42 213 10 176 1.06e-53 189
Msa0175850 AT1G32870.1 57.225 173 67 3 42 213 10 176 1.25e-53 189
Msa0175850 AT5G46590.1 53.988 163 69 2 40 201 4 161 1.66e-53 182
Msa0175850 AT1G32870.3 57.225 173 67 3 42 213 46 212 3.59e-53 188
Msa0175850 AT5G24590.2 53.704 162 68 2 41 201 12 167 1.50e-52 184
Msa0175850 AT3G49530.2 53.086 162 69 3 41 201 12 167 5.67e-52 181
Msa0175850 AT2G18060.3 50.000 164 73 3 40 202 7 162 9.84e-52 179
Msa0175850 AT2G18060.1 50.000 164 73 3 40 202 7 162 9.84e-52 179
Msa0175850 AT3G49530.1 53.086 162 69 3 41 201 12 167 2.12e-51 181
Msa0175850 AT5G04395.1 54.601 163 59 4 26 173 11 173 4.10e-51 172
Msa0175850 AT1G33060.2 50.289 173 80 2 26 198 8 174 5.14e-51 184
Msa0175850 AT1G33060.1 54.430 158 66 2 41 198 23 174 6.67e-51 183
Msa0175850 AT4G36160.1 48.851 174 77 4 35 207 3 165 1.11e-50 177
Msa0175850 AT4G36160.3 48.851 174 77 4 35 207 3 165 1.11e-50 177
Msa0175850 AT4G36160.2 48.851 174 77 4 35 207 7 169 1.16e-50 177
Msa0175850 AT4G17980.1 52.469 162 71 2 40 199 4 161 3.08e-50 172
Msa0175850 AT4G10350.1 50.943 159 71 3 44 201 11 163 3.17e-50 175
Msa0175850 AT1G33280.1 49.686 159 70 2 44 201 10 159 3.17e-50 174
Msa0175850 AT1G71930.2 50.000 160 71 3 40 198 7 158 4.97e-50 174
Msa0175850 AT1G71930.1 50.000 160 71 3 40 198 7 158 4.97e-50 174
Msa0175850 AT4G17980.2 52.469 162 71 2 40 199 4 161 9.07e-50 172
Msa0175850 AT5G66300.1 49.390 164 75 3 41 203 11 167 9.36e-50 172
Msa0175850 AT1G79580.3 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0175850 AT1G79580.5 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0175850 AT1G79580.4 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0175850 AT1G79580.2 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0175850 AT1G79580.1 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0175850 AT1G32770.1 48.193 166 81 2 40 200 14 179 4.55e-49 172
Msa0175850 AT4G27410.2 50.000 160 72 2 41 200 13 164 9.97e-49 169
Msa0175850 AT2G46770.1 44.751 181 92 2 29 201 3 183 1.49e-48 171
Msa0175850 AT1G12260.2 51.282 156 67 3 44 198 9 156 1.67e-48 170
Msa0175850 AT1G12260.1 51.282 156 67 3 44 198 9 156 2.03e-48 171
Msa0175850 AT4G35580.1 53.797 158 67 1 41 198 8 159 2.32e-48 174
Msa0175850 AT5G46590.2 57.037 135 57 1 40 173 4 138 2.44e-48 168
Msa0175850 AT5G07680.2 52.795 161 70 3 42 202 3 157 2.62e-48 169
Msa0175850 AT4G35580.2 53.797 158 67 1 41 198 8 159 3.55e-48 174
Msa0175850 AT4G35580.3 53.797 158 67 1 41 198 8 159 3.64e-48 174
Msa0175850 AT5G07680.1 52.174 161 71 2 42 202 17 171 5.25e-48 168
Msa0175850 AT3G04070.2 49.143 175 75 5 35 200 3 172 1.03e-47 168
Msa0175850 AT1G62700.1 51.923 156 66 3 44 198 9 156 1.54e-47 169
Msa0175850 AT1G62700.2 51.923 156 66 3 44 198 9 156 1.54e-47 169
Msa0175850 AT3G18400.1 51.875 160 64 3 41 198 4 152 1.69e-47 167
Msa0175850 AT5G61430.1 52.174 161 71 2 42 202 16 170 5.07e-47 166
Msa0175850 AT3G12977.1 48.148 162 77 2 41 202 17 171 9.55e-47 164
Msa0175850 AT5G62380.2 50.633 158 69 3 42 198 7 156 9.78e-47 166
Msa0175850 AT5G62380.1 50.633 158 69 3 42 198 7 156 9.78e-47 166
Msa0175850 AT2G24430.2 51.250 160 67 3 41 198 15 165 1.52e-46 164
Msa0175850 AT2G24430.1 51.250 160 67 3 41 198 15 165 1.52e-46 164
Msa0175850 AT4G27410.3 46.286 175 73 2 41 200 13 181 1.95e-46 164
Msa0175850 AT3G15500.1 51.266 158 69 3 41 198 13 162 2.46e-46 164
Msa0175850 AT3G04070.1 45.213 188 75 5 35 198 3 186 3.27e-46 164
Msa0175850 AT5G18270.2 53.125 160 68 4 42 200 21 174 5.01e-46 163
Msa0175850 AT3G61910.1 45.783 166 82 2 44 201 13 178 5.71e-46 163
Msa0175850 AT5G18270.1 53.125 160 68 4 42 200 21 174 8.07e-46 163
Msa0175850 AT5G39610.1 53.416 161 69 3 42 202 20 174 9.04e-46 161
Msa0175850 AT3G15510.1 50.000 162 72 3 46 200 21 180 1.15e-45 163
Msa0175850 AT1G52890.1 50.633 158 70 3 41 198 13 162 1.30e-45 162
Msa0175850 AT1G77450.1 48.734 158 75 3 44 201 12 163 1.45e-45 160
Msa0175850 AT1G32510.1 49.091 165 72 2 42 199 6 165 2.10e-45 160
Msa0175850 AT1G01720.1 46.369 179 87 4 42 216 7 180 2.88e-45 160
Msa0175850 AT1G61110.1 45.503 189 86 5 42 220 16 197 8.37e-45 160
Msa0175850 AT2G27300.1 51.282 156 62 3 40 195 12 153 8.58e-45 160
Msa0175850 AT1G69490.1 47.799 159 79 2 40 198 7 161 1.00e-44 158
Msa0175850 AT3G04060.1 50.314 159 72 3 42 199 20 172 1.08e-44 160
Msa0175850 AT2G33480.2 51.592 157 63 2 42 198 15 158 1.21e-44 157
Msa0175850 AT1G26870.1 48.171 164 78 3 42 200 16 177 1.83e-44 161
Msa0175850 AT3G44290.2 49.398 166 65 3 35 195 2 153 1.90e-44 156
Msa0175850 AT2G33480.1 50.955 157 66 2 42 198 15 160 3.62e-44 156
Msa0175850 AT3G29035.1 52.469 162 69 3 42 202 24 178 9.95e-44 157
Msa0175850 AT3G44290.1 49.398 166 65 3 35 195 2 153 1.27e-43 157
Msa0175850 AT5G53950.1 51.852 162 70 4 42 201 17 172 1.43e-43 158
Msa0175850 AT5G22290.1 45.930 172 80 2 24 195 3 161 1.48e-43 157
Msa0175850 AT2G02450.1 47.468 158 72 3 42 198 51 198 1.73e-43 158
Msa0175850 AT2G43000.1 48.387 155 73 2 44 198 20 167 1.79e-43 155
Msa0175850 AT1G56010.2 48.765 162 77 3 42 202 19 175 3.05e-43 155
Msa0175850 AT3G15170.1 49.375 160 73 4 44 201 22 175 3.10e-43 155
Msa0175850 AT2G02450.2 47.468 158 72 3 42 198 51 198 3.12e-43 158
Msa0175850 AT5G63790.1 47.799 159 77 4 41 198 49 202 4.88e-43 155
Msa0175850 AT5G63790.2 47.799 159 77 4 41 198 59 212 6.50e-43 155
Msa0175850 AT5G08790.1 48.428 159 76 4 41 198 6 159 1.89e-42 152
Msa0175850 AT5G39820.1 44.944 178 75 4 42 200 20 193 2.45e-42 154
Msa0175850 AT5G13180.1 50.000 166 69 4 42 205 14 167 2.94e-42 151
Msa0175850 AT1G76420.1 48.750 160 71 3 41 198 21 171 1.07e-41 152
Msa0175850 AT2G17040.1 47.468 158 67 4 44 198 8 152 5.72e-41 148
Msa0175850 AT1G52880.1 49.689 161 73 3 46 200 21 179 5.25e-40 147
Msa0175850 AT4G28530.1 45.506 178 65 5 40 198 8 172 1.38e-39 146
Msa0175850 AT3G12910.1 41.579 190 83 8 44 219 23 198 2.29e-34 131
Msa0175850 AT3G12977.2 51.887 106 46 1 98 203 19 119 2.43e-32 123
Msa0175850 AT1G56010.1 52.381 105 47 1 98 202 7 108 1.22e-30 119
Msa0175850 AT4G01520.1 45.038 131 65 4 45 169 7 136 1.05e-28 115
Msa0175850 AT5G61430.2 51.376 109 49 2 94 202 3 107 2.47e-28 114
Msa0175850 AT4G10350.2 49.515 103 46 2 99 201 20 116 2.60e-28 114
Msa0175850 AT4G01550.1 40.491 163 80 4 45 202 7 157 8.01e-28 115
Msa0175850 AT4G01540.3 45.802 131 64 4 45 169 7 136 8.11e-28 115
Msa0175850 AT4G01540.1 45.802 131 64 4 45 169 7 136 9.58e-28 115
Msa0175850 AT4G01540.2 45.802 131 64 4 45 169 7 136 1.03e-27 115
Msa0175850 AT3G04420.2 35.220 159 90 2 45 201 6 153 1.08e-27 112
Msa0175850 AT4G01540.4 45.802 131 64 4 45 169 7 136 1.18e-27 114
Msa0175850 AT5G22380.1 39.490 157 86 5 45 196 8 160 1.54e-27 110
Msa0175850 AT3G04420.1 35.220 159 90 2 45 201 6 153 2.91e-27 112
Msa0175850 AT3G44350.2 36.196 163 95 4 42 200 5 162 5.10e-27 109
Msa0175850 AT3G44350.1 40.299 134 76 3 42 171 5 138 1.46e-26 105
Msa0175850 AT1G02230.1 43.750 128 64 4 45 167 6 130 1.36e-24 105
Msa0175850 AT2G33480.3 49.020 102 46 1 97 198 8 103 1.48e-24 101
Msa0175850 AT1G01010.1 38.462 169 75 6 45 200 6 158 4.34e-24 104
Msa0175850 AT4G28530.2 44.361 133 52 4 40 153 8 137 4.98e-24 102
Msa0175850 AT1G02250.1 39.241 158 74 5 45 195 6 148 1.29e-23 102
Msa0175850 AT5G64530.1 36.095 169 84 5 41 199 2 156 5.82e-23 96.7
Msa0175850 AT5G64530.2 41.221 131 61 4 41 169 2 118 9.84e-23 95.1
Msa0175850 AT1G02220.1 34.615 156 82 4 45 196 6 145 1.98e-21 96.7
Msa0175850 AT2G43000.2 45.055 91 45 1 108 198 4 89 8.33e-19 85.1
Msa0175850 AT2G18060.2 45.122 82 37 2 121 202 1 74 5.97e-18 84.3
Msa0175850 AT5G50820.1 36.090 133 71 4 42 170 17 139 8.53e-16 76.3
Msa0175850 AT5G22290.2 47.945 73 26 1 123 195 2 62 2.45e-15 75.9
Msa0175850 AT3G04430.1 35.338 133 72 5 48 168 6 136 1.12e-14 73.2
Msa0175850 AT5G14000.2 32.308 130 82 2 42 169 15 140 3.55e-14 70.5
Msa0175850 AT5G14000.1 32.061 131 83 2 42 170 15 141 2.38e-13 69.3
Msa0175850 AT3G56530.1 33.846 130 81 4 41 167 51 178 5.63e-13 70.1

Find 163 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATCATTCTAATGTTTC+TGG 0.114557 1_4:+61997419 Msa0175850:CDS
TACCTGAAACGCAAGGTTTC+TGG 0.120223 1_4:+61992492 Msa0175850:CDS
TTCCAGAAACCTTGCGTTTC+AGG 0.148202 1_4:-61992494 None:intergenic
GTTATGTTTACAGTTAATTT+TGG 0.196332 1_4:+61997897 Msa0175850:three_prime_UTR
ACCCATTTGGTGAAGGAAAA+AGG 0.237118 1_4:-61992301 None:intergenic
GGTGGTAAAGATGGTGAATT+AGG 0.244295 1_4:-61992266 None:intergenic
AGGTATTGGCTTTGGGTTAT+CGG 0.265100 1_4:-61997363 None:intergenic
TAAATTTGAGGTATTGGCTT+TGG 0.265384 1_4:-61997371 None:intergenic
GTTGGTTGTGGTGGCAGATG+GGG 0.287064 1_4:-61992352 None:intergenic
GATGAGAAATCCTTAGGAAT+TGG 0.306387 1_4:+61997841 Msa0175850:exon
GGTTGGTTGTGGTGGCAGAT+GGG 0.309914 1_4:-61992353 None:intergenic
TTGGTTGTGGTGGCAGATGG+GGG 0.318306 1_4:-61992351 None:intergenic
CCACCAACTTCCCTTGCTCC+TGG 0.322466 1_4:+61992429 Msa0175850:CDS
GGGTTGGTTGTGGTGGCAGA+TGG 0.326166 1_4:-61992354 None:intergenic
CAGACTTGTTGAGGAAGAAT+TGG 0.330744 1_4:+61993103 Msa0175850:CDS
GAGCATGGATCCTGACTGTT+AGG 0.340222 1_4:-61997455 None:intergenic
TCCAGAAACATTAGAATGAT+TGG 0.341328 1_4:-61997420 None:intergenic
AGTGCATTGGACAAGAAGTA+TGG 0.341837 1_4:+61992912 Msa0175850:CDS
AGGAAGAATTGGAGAGGGAG+AGG 0.353596 1_4:+61993114 Msa0175850:CDS
TGGCTTTGGGTTATCGGTTG+GGG 0.354074 1_4:-61997357 None:intergenic
TTGGCTTTGGGTTATCGGTT+GGG 0.362139 1_4:-61997358 None:intergenic
AAAAGGGGTGGTGGTGGCGG+TGG 0.369930 1_4:-61992284 None:intergenic
AAATTTGAGGTATTGGCTTT+GGG 0.370279 1_4:-61997370 None:intergenic
AATTGGAGAGGGAGAGGGCT+GGG 0.371112 1_4:+61993120 Msa0175850:CDS
GAAGGATCAGGAATGGTTCC+TGG 0.374359 1_4:+61993533 Msa0175850:CDS
GGTGCATACCGTTGTCCATT+TGG 0.375191 1_4:-61993488 None:intergenic
CTGACGGTAAGAGAACAAAT+TGG 0.376713 1_4:+61993066 Msa0175850:CDS
AAATTAACTGTAAACATAAC+TGG 0.379630 1_4:-61997894 None:intergenic
TAAGAATTTCTTGTCATTGA+AGG 0.380662 1_4:+61992173 Msa0175850:five_prime_UTR
GAGAGGGAGAGGGCTGGGGC+TGG 0.382302 1_4:+61993125 Msa0175850:CDS
GTTGAAGAAGAGTGGGAAGA+AGG 0.405733 1_4:+61993515 Msa0175850:CDS
TCTTCAACCCCACGGTCCTT+AGG 0.407296 1_4:-61993013 None:intergenic
ATGAACAGGGCCACTCTTCA+AGG 0.407496 1_4:+61992948 Msa0175850:CDS
AGACGCAGATGGCGGTCAAC+AGG 0.412382 1_4:-61993593 None:intergenic
TGGGGAAGGGTTGGTTGTGG+TGG 0.412548 1_4:-61992361 None:intergenic
TTGGACAAGAAGTATGGAAA+TGG 0.417128 1_4:+61992918 Msa0175850:CDS
ATTGGCTTTGGGTTATCGGT+TGG 0.426011 1_4:-61997359 None:intergenic
TTAACGCTTCGTGTCTATCA+AGG 0.430891 1_4:-61992153 None:intergenic
GAAGAGTGGGAAGAAGGATC+AGG 0.432033 1_4:+61993521 Msa0175850:CDS
TCCCACTCTTCTTCAACAAA+AGG 0.434809 1_4:-61993509 None:intergenic
GAGGTTCTTCGTGACCCATT+TGG 0.436733 1_4:-61992314 None:intergenic
ATGAGAAATCCTTAGGAATT+GGG 0.438123 1_4:+61997842 Msa0175850:exon
GGCTGGACCCTCTCAGCCAC+AGG 0.444725 1_4:+61993142 Msa0175850:CDS
GTCCTTAGGTCATGCTTCAC+TGG 0.450996 1_4:-61992999 None:intergenic
CCTAAGAGAAACGGAAAAGA+TGG 0.452564 1_4:-61992231 None:intergenic
CAATTTGTTCTCTTACCGTC+AGG 0.453627 1_4:-61993065 None:intergenic
TGACAGCAGCAGCAGTTGTC+GGG 0.454117 1_4:-61997508 None:intergenic
GATGATGATGAGAAATCCTT+AGG 0.454383 1_4:+61997835 Msa0175850:CDS
ACCGCCATCTGCGTCTTGAA+TGG 0.456045 1_4:+61993600 Msa0175850:CDS
TGGACAAGAAGTATGGAAAT+GGG 0.460782 1_4:+61992919 Msa0175850:CDS
GCAGACAGAAAATGTTTCTT+CGG 0.462378 1_4:-61997548 None:intergenic
AATAACATTGGGCCTCCAAA+TGG 0.464203 1_4:+61993473 Msa0175850:CDS
TCGATTCAAGTGATTCTAGC+AGG 0.464978 1_4:-61997586 None:intergenic
AAAATACCACTCCTGGTCTC+TGG 0.466296 1_4:-61992886 None:intergenic
AGAAAATGTTTCTTCGGAGC+AGG 0.466898 1_4:-61997542 None:intergenic
GAATTGGAGAGGGAGAGGGC+TGG 0.467265 1_4:+61993119 Msa0175850:CDS
GGTGGTGGCGGTGGTAAAGA+TGG 0.468577 1_4:-61992275 None:intergenic
CAAGGGTACTGGAAAGCTAC+TGG 0.470409 1_4:+61992966 Msa0175850:CDS
AAAAGATGGGTCCTTGATTG+AGG 0.473031 1_4:-61992217 None:intergenic
TGTTGCTTGACCCTCAATCA+AGG 0.478413 1_4:+61992206 Msa0175850:five_prime_UTR
GGGCCACTCTTCAAGGGTAC+TGG 0.478484 1_4:+61992955 Msa0175850:CDS
ATGTTTCTTCGGAGCAGGTT+TGG 0.480031 1_4:-61997537 None:intergenic
TTCATTCCACCCTAACAGTC+AGG 0.487133 1_4:+61997445 Msa0175850:CDS
GTGACAGCAGCAGCAGTTGT+CGG 0.492417 1_4:-61997509 None:intergenic
GAGTGGGGAAGGGTTGGTTG+TGG 0.492703 1_4:-61992364 None:intergenic
AGGAAGAAATCATGTTGTGC+AGG 0.503320 1_4:+61993646 Msa0175850:CDS
CAGGAGCAAGGGAAGTTGGT+GGG 0.503619 1_4:-61992428 None:intergenic
TTCTCTTACCGTCAGGAGCA+CGG 0.510815 1_4:-61993058 None:intergenic
ATTGGAGAGGGAGAGGGCTG+GGG 0.513068 1_4:+61993121 Msa0175850:CDS
TGACGGTAAGAGAACAAATT+GGG 0.514361 1_4:+61993067 Msa0175850:CDS
CTTCGTGACCCATTTGGTGA+AGG 0.517956 1_4:-61992308 None:intergenic
AAGGATCAGGAATGGTTCCT+GGG 0.522130 1_4:+61993534 Msa0175850:CDS
ACTGAAACTGTGAGTGGGGA+AGG 0.523145 1_4:-61992375 None:intergenic
AACTGTGAGTGGGGAAGGGT+TGG 0.526120 1_4:-61992370 None:intergenic
GGAAGAATTGGAGAGGGAGA+GGG 0.531584 1_4:+61993115 Msa0175850:CDS
CAATACCTCAAATTTACAAA+AGG 0.532623 1_4:+61997378 Msa0175850:CDS
GCCTTCTGCTTCTGCTTCTG+CGG 0.532660 1_4:+61992404 Msa0175850:CDS
GCATACCGTTGTCCATTTGG+AGG 0.534396 1_4:-61993485 None:intergenic
TTGATGTACTTTGCAACACT+CGG 0.534652 1_4:-61997677 None:intergenic
ACAGAAGCTTGGTGTTGAGA+AGG 0.537600 1_4:+61997718 Msa0175850:CDS
AAACCAGGAGCAAGGGAAGT+TGG 0.539842 1_4:-61992432 None:intergenic
GGGGCTGAGCCTGTGAGTAA+TGG 0.540169 1_4:+61993554 Msa0175850:CDS
AGCAATAGCATCAAATCTGA+AGG 0.541393 1_4:-61992520 None:intergenic
ATGACAAGTTCTTCATCAGT+GGG 0.542348 1_4:-61992465 None:intergenic
AGAATCACTTGAATCGAAGA+AGG 0.542425 1_4:+61997592 Msa0175850:CDS
GCCGCAGAAGCAGAAGCAGA+AGG 0.544079 1_4:-61992405 None:intergenic
GTGGTAAAGATGGTGAATTA+GGG 0.544180 1_4:-61992265 None:intergenic
TGTTTCACAAGAATAACATT+GGG 0.544352 1_4:+61993462 Msa0175850:CDS
TGTTGAGGAAGAATTGGAGA+GGG 0.544892 1_4:+61993109 Msa0175850:CDS
ATCTTCTTGCTGTGTGCAAG+AGG 0.546342 1_4:+61997258 Msa0175850:CDS
GGTGGAGTTTCATGCAATGA+AGG 0.546700 1_4:+61993626 Msa0175850:CDS
GAAGCAGAAGCAGAAGGCGA+TGG 0.547423 1_4:-61992399 None:intergenic
TCAGCGCAGCCTAAGAGAAA+CGG 0.547803 1_4:-61992240 None:intergenic
GGCTTTGGGTTATCGGTTGG+GGG 0.551932 1_4:-61997356 None:intergenic
TTCGCCAGGTCAAAATCTGC+CGG 0.556147 1_4:-61997635 None:intergenic
AAGGCTGAAGACCAGAGACC+AGG 0.556150 1_4:+61992875 Msa0175850:CDS
GGCAGCTTGTTCACATCAAG+TGG 0.556553 1_4:-61997221 None:intergenic
CAGAGTGAGACACAGAAGCT+TGG 0.557413 1_4:+61997707 Msa0175850:CDS
GTGTTTCACAAGAATAACAT+TGG 0.558703 1_4:+61993461 Msa0175850:CDS
AATCTCACCTGTGGCTGAGA+GGG 0.561129 1_4:-61993149 None:intergenic
GGACTGGAGAATGTTAATCA+TGG 0.565652 1_4:-61997774 None:intergenic
GAGATCACTCCCAATTCCTA+AGG 0.566456 1_4:-61997851 None:intergenic
AAACCACACCTCAGTTCAGC+CGG 0.567970 1_4:+61997616 Msa0175850:CDS
TTACTCACAGGCTCAGCCCC+AGG 0.568758 1_4:-61993551 None:intergenic
GAAACCTAAAACCAGGAGCA+AGG 0.569063 1_4:-61992440 None:intergenic
CGGGAGAGTTGTCGCTGCAG+TGG 0.572953 1_4:-61997489 None:intergenic
TGTCGCTGCAGTGGTTATTG+TGG 0.575009 1_4:-61997480 None:intergenic
TGAGGGTCAAGCAACAAATG+AGG 0.575063 1_4:-61992199 None:intergenic
AAAGATGGGTCCTTGATTGA+GGG 0.578115 1_4:-61992216 None:intergenic
AGCATGGATCCTGACTGTTA+GGG 0.580746 1_4:-61997454 None:intergenic
TACCTCAAATTTACAAAAGG+CGG 0.580806 1_4:+61997381 Msa0175850:CDS
CGATTCAAGTGATTCTAGCA+GGG 0.581841 1_4:-61997585 None:intergenic
AATGACAAGTTCTTCATCAG+TGG 0.585466 1_4:-61992466 None:intergenic
CCAGGAGCAAGGGAAGTTGG+TGG 0.586031 1_4:-61992429 None:intergenic
AACTGGTACATCATCATACA+AGG 0.587563 1_4:-61997877 None:intergenic
GTGGTTATTGTGGACGAGCA+TGG 0.588687 1_4:-61997470 None:intergenic
CATAGCGGCCGTGCTCCTGA+CGG 0.589241 1_4:+61993050 Msa0175850:CDS
TTGTTGAGGAAGAATTGGAG+AGG 0.590719 1_4:+61993108 Msa0175850:CDS
AAGCATGACCTAAGGACCGT+GGG 0.591696 1_4:+61993005 Msa0175850:CDS
AAACCTAAAACCAGGAGCAA+GGG 0.592028 1_4:-61992439 None:intergenic
GTCCAGTGAAGCATGACCTA+AGG 0.593027 1_4:+61992997 Msa0175850:CDS
CGTGGGGTTGAAGAAGACTC+TGG 0.595548 1_4:+61993022 Msa0175850:CDS
CGTTCCATTCAAGACGCAGA+TGG 0.603501 1_4:-61993604 None:intergenic
CTGAAACTGTGAGTGGGGAA+GGG 0.604955 1_4:-61992374 None:intergenic
TTTCCAGTACCCTTGAAGAG+TGG 0.605704 1_4:-61992958 None:intergenic
AGGAGCAAGGGAAGTTGGTG+GGG 0.605772 1_4:-61992427 None:intergenic
CACACGATTCAAGATTCGCC+AGG 0.607792 1_4:-61997649 None:intergenic
CTCACAGGACCATTACTCAC+AGG 0.609740 1_4:-61993563 None:intergenic
ATGGTACTGAAACTGTGAGT+GGG 0.611208 1_4:-61992380 None:intergenic
GCAATAGCATCAAATCTGAA+GGG 0.612782 1_4:-61992519 None:intergenic
GAGGGTCAAGCAACAAATGA+GGG 0.615619 1_4:-61992198 None:intergenic
CTAAGAGAAACGGAAAAGAT+GGG 0.618091 1_4:-61992230 None:intergenic
AAATCTCACCTGTGGCTGAG+AGG 0.618188 1_4:-61993150 None:intergenic
GGACAAGAAGTATGGAAATG+GGG 0.619017 1_4:+61992920 Msa0175850:CDS
AAAATCTGCCGGCTGAACTG+AGG 0.619043 1_4:-61997624 None:intergenic
TCTTCTTGCTGTGTGCAAGA+GGG 0.619397 1_4:+61997259 Msa0175850:CDS
AGTAATGGTCCTGTGAGTAA+TGG 0.621405 1_4:+61993569 Msa0175850:CDS
TATCTACAAGAGTGAACCAT+GGG 0.622125 1_4:+61992551 Msa0175850:CDS
GCATGAGTACAGACTTGTTG+AGG 0.623966 1_4:+61993094 Msa0175850:CDS
GTGGGAAGAAGGATCAGGAA+TGG 0.625194 1_4:+61993526 Msa0175850:CDS
TCCATTCAAGACGCAGATGG+CGG 0.626079 1_4:-61993601 None:intergenic
GACAAGAAGTATGGAAATGG+GGG 0.626774 1_4:+61992921 Msa0175850:CDS
TGAACAGGGCCACTCTTCAA+GGG 0.626821 1_4:+61992949 Msa0175850:CDS
CATTTATTACCTGAAACGCA+AGG 0.633311 1_4:+61992485 Msa0175850:CDS
GTGGGGTGAAACCTAAAACC+AGG 0.639047 1_4:-61992447 None:intergenic
TCAACAGGACCATTACTCAC+AGG 0.640806 1_4:-61993578 None:intergenic
AAATCTCAGCAAAGAGAACG+AGG 0.650884 1_4:+61997805 Msa0175850:CDS
CTGCCGGCTGAACTGAGGTG+TGG 0.655152 1_4:-61997619 None:intergenic
TGAAGACCAGAGACCAGGAG+TGG 0.658962 1_4:+61992880 Msa0175850:CDS
ATGGATCCTGACTGTTAGGG+TGG 0.663696 1_4:-61997451 None:intergenic
AGGATCAGGAATGGTTCCTG+GGG 0.666000 1_4:+61993535 Msa0175850:CDS
GAAGCATGACCTAAGGACCG+TGG 0.670328 1_4:+61993004 Msa0175850:CDS
CTGCGTCTTGAATGGAACGG+TGG 0.671731 1_4:+61993608 Msa0175850:CDS
CAGAGTCTTCTTCAACCCCA+CGG 0.674792 1_4:-61993021 None:intergenic
ATATCTACAAGAGTGAACCA+TGG 0.689492 1_4:+61992550 Msa0175850:CDS
ATGTACTTTGCAACACTCGG+AGG 0.704212 1_4:-61997674 None:intergenic
TTGGGCCTCCAAATGGACAA+CGG 0.705935 1_4:+61993480 Msa0175850:CDS
TGGTACTGAAACTGTGAGTG+GGG 0.714391 1_4:-61992379 None:intergenic
CATCTGCGTCTTGAATGGAA+CGG 0.717625 1_4:+61993605 Msa0175850:CDS
AAGACTCTGGTGTTTCATAG+CGG 0.718209 1_4:+61993035 Msa0175850:CDS
GATGGTACTGAAACTGTGAG+TGG 0.721748 1_4:-61992381 None:intergenic
TGACAAGTTCTTCATCAGTG+GGG 0.741273 1_4:-61992464 None:intergenic
AGCATGACCTAAGGACCGTG+GGG 0.767258 1_4:+61993006 Msa0175850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAGTTTATTTTTTC+TGG + chr1_4:61992647-61992666 Msa0175850:intron 10.0%
!!! TTTTAAAGTTTATTTTTTCT+GGG + chr1_4:61992648-61992667 Msa0175850:intron 10.0%
!!! TTTGTTTTTAATTATTGAAA+TGG + chr1_4:61992714-61992733 Msa0175850:intron 10.0%
!!! TTGTTTTTAATTATTGAAAT+GGG + chr1_4:61992715-61992734 Msa0175850:intron 10.0%
!! ATATCAAAATTTATTAGTTA+GGG - chr1_4:61994398-61994417 None:intergenic 10.0%
!! TATATCAAAATTTATTAGTT+AGG - chr1_4:61994399-61994418 None:intergenic 10.0%
!!! GTATTTATTTTTTATTTTCA+AGG - chr1_4:61994851-61994870 None:intergenic 10.0%
!!! TTATCTTGGTTAAATTTTAA+TGG + chr1_4:61992744-61992763 Msa0175850:intron 15.0%
!!! TATCTTGGTTAAATTTTAAT+GGG + chr1_4:61992745-61992764 Msa0175850:intron 15.0%
!!! TAGTTTTTTATGATGATTTT+AGG + chr1_4:61992781-61992800 Msa0175850:intron 15.0%
!!! AGTTTTTTATGATGATTTTA+GGG + chr1_4:61992782-61992801 Msa0175850:intron 15.0%
!!! TAGCATTATTTGTTTTTATT+CGG + chr1_4:61993925-61993944 Msa0175850:intron 15.0%
!!! ACATTTTTTTTTTTTGTTCT+TGG + chr1_4:61995863-61995882 Msa0175850:intron 15.0%
!!! CATTTTTTTTTTTTGTTCTT+GGG + chr1_4:61995864-61995883 Msa0175850:intron 15.0%
!!! ATTTATATCCAAGTTTATTT+TGG + chr1_4:61996363-61996382 Msa0175850:intron 15.0%
!!! TCTCAATTTTTGTTTGATAA+AGG + chr1_4:61992619-61992638 Msa0175850:intron 20.0%
!!! TTTAATTTAGGTTAACGTTA+GGG + chr1_4:61992679-61992698 Msa0175850:intron 20.0%
!!! AATTTTGTTTAGATAAGTCA+AGG + chr1_4:61992856-61992875 Msa0175850:intron 20.0%
!! TAAGTAACAATAGACAATTT+GGG - chr1_4:61993311-61993330 None:intergenic 20.0%
!! TTAAGTAACAATAGACAATT+TGG - chr1_4:61993312-61993331 None:intergenic 20.0%
!! AAAAGAAGAAAATACATAAC+TGG - chr1_4:61993965-61993984 None:intergenic 20.0%
!! AACATGTTAAATTAAAACTC+CGG - chr1_4:61994043-61994062 None:intergenic 20.0%
!! TGTACAATAATAATGTTATC+CGG + chr1_4:61994083-61994102 Msa0175850:intron 20.0%
!!! TTTTGATATACGTTTTTGTT+TGG + chr1_4:61994409-61994428 Msa0175850:intron 20.0%
!!! TTTGATATACGTTTTTGTTT+GGG + chr1_4:61994410-61994429 Msa0175850:intron 20.0%
!! AGAAGAAAAAATTATGAATG+AGG - chr1_4:61994931-61994950 None:intergenic 20.0%
!!! CTATTTCTTTTTCAGTTAAA+TGG - chr1_4:61995133-61995152 None:intergenic 20.0%
!!! AGTTAGTTATTTTAATTGCT+AGG + chr1_4:61996020-61996039 Msa0175850:intron 20.0%
!!! GTTAGTTATTTTAATTGCTA+GGG + chr1_4:61996021-61996040 Msa0175850:intron 20.0%
!! AAATTCATACTAAATACCTA+GGG - chr1_4:61996058-61996077 None:intergenic 20.0%
!! ATTTGACTAATTAGTTGTTT+AGG + chr1_4:61996155-61996174 Msa0175850:intron 20.0%
!! TTTGACTAATTAGTTGTTTA+GGG + chr1_4:61996156-61996175 Msa0175850:intron 20.0%
!! TCTAAATACCAAGAAAAATA+CGG - chr1_4:61996914-61996933 None:intergenic 20.0%
!! AAATTAACTGTAAACATAAC+TGG - chr1_4:61997897-61997916 None:intergenic 20.0%
!!! GTTATGTTTACAGTTAATTT+TGG + chr1_4:61997897-61997916 Msa0175850:three_prime_UTR 20.0%
!!! AGATGACAATTTTTAACAAT+GGG - chr1_4:61998035-61998054 None:intergenic 20.0%
!!! AAGATGACAATTTTTAACAA+TGG - chr1_4:61998036-61998055 None:intergenic 20.0%
! TAAGAATTTCTTGTCATTGA+AGG + chr1_4:61992173-61992192 Msa0175850:five_prime_UTR 25.0%
!! GTTTAATTTAGGTTAACGTT+AGG + chr1_4:61992678-61992697 Msa0175850:intron 25.0%
! GTTTAATGTGTTAATGTGAA+TGG + chr1_4:61992823-61992842 Msa0175850:intron 25.0%
! AACACAAAATCATACAGTTT+AGG - chr1_4:61993200-61993219 None:intergenic 25.0%
!! TAAACTGTATGATTTTGTGT+TGG + chr1_4:61993199-61993218 Msa0175850:intron 25.0%
! CATTGTTATATTATTACAGC+TGG + chr1_4:61993379-61993398 Msa0175850:intron 25.0%
! TGTTTCACAAGAATAACATT+GGG + chr1_4:61993462-61993481 Msa0175850:CDS 25.0%
! GTGAAAAAGTAGTTGAAATA+TGG + chr1_4:61993832-61993851 Msa0175850:intron 25.0%
!!! TCAAACTCATAAATTTGCTA+AGG + chr1_4:61993887-61993906 Msa0175850:intron 25.0%
!!! CAAACTCATAAATTTGCTAA+GGG + chr1_4:61993888-61993907 Msa0175850:intron 25.0%
! AAAAGAGTAAAATTCATGAC+CGG + chr1_4:61994012-61994031 Msa0175850:intron 25.0%
!!! TTTTTTGTTTCGAGAAAGAA+AGG - chr1_4:61994254-61994273 None:intergenic 25.0%
!!! TCATCAAAATTTTGATTGTG+CGG - chr1_4:61994358-61994377 None:intergenic 25.0%
!!! ACAATCAAAATTTTGATGAC+TGG + chr1_4:61994359-61994378 Msa0175850:intron 25.0%
!!! CAATCAAAATTTTGATGACT+GGG + chr1_4:61994360-61994379 Msa0175850:intron 25.0%
! TATATGGTATACTTGCAATA+TGG + chr1_4:61994708-61994727 Msa0175850:intron 25.0%
! TTGGAGATATTTGGAAATTA+TGG + chr1_4:61995044-61995063 Msa0175850:intron 25.0%
! AGATATTTGGAAATTATGGA+CGG + chr1_4:61995048-61995067 Msa0175850:intron 25.0%
! TATGTTCTGTCAATAATTCA+GGG - chr1_4:61995280-61995299 None:intergenic 25.0%
! TTATGTTCTGTCAATAATTC+AGG - chr1_4:61995281-61995300 None:intergenic 25.0%
!! AGCTTCAATAATGCTTTTAT+GGG + chr1_4:61995473-61995492 Msa0175850:intron 25.0%
! AATTCATACTAAATACCTAG+GGG - chr1_4:61996057-61996076 None:intergenic 25.0%
! CAAATTCATACTAAATACCT+AGG - chr1_4:61996059-61996078 None:intergenic 25.0%
! TTGACTAATTAGTTGTTTAG+GGG + chr1_4:61996157-61996176 Msa0175850:intron 25.0%
!!! TCCAAGTTTATTTTGGATAA+CGG + chr1_4:61996370-61996389 Msa0175850:intron 25.0%
!!! TTTTTCTTTAGAGAAGTCAA+GGG + chr1_4:61996612-61996631 Msa0175850:intron 25.0%
! GATAATGTCAACATACAAAA+GGG - chr1_4:61997022-61997041 None:intergenic 25.0%
! AGATAATGTCAACATACAAA+AGG - chr1_4:61997023-61997042 None:intergenic 25.0%
! TATGTTGACATTATCTATGT+TGG + chr1_4:61997027-61997046 Msa0175850:intron 25.0%
! TAGATATACAACAAGTTAGA+AGG - chr1_4:61997116-61997135 None:intergenic 25.0%
!!! CTTTTGTAAATTTGAGGTAT+TGG - chr1_4:61997380-61997399 None:intergenic 25.0%
! CAATACCTCAAATTTACAAA+AGG + chr1_4:61997378-61997397 Msa0175850:CDS 25.0%
!!! TGGGCTGTTTTGTTTAATTT+AGG + chr1_4:61992667-61992686 Msa0175850:intron 30.0%
!!! GAAATGGGTTTTGTTTATCT+TGG + chr1_4:61992730-61992749 Msa0175850:intron 30.0%
TAATGTGTTAATGTGAATGG+TGG + chr1_4:61992826-61992845 Msa0175850:intron 30.0%
AATTTGTAAAATCTCACCTG+TGG - chr1_4:61993161-61993180 None:intergenic 30.0%
! ACAATAGACAATTTGGGTTT+GGG - chr1_4:61993305-61993324 None:intergenic 30.0%
! AACAATAGACAATTTGGGTT+TGG - chr1_4:61993306-61993325 None:intergenic 30.0%
! ATTTTTGTGCATTTCTCTGT+TGG + chr1_4:61993408-61993427 Msa0175850:intron 30.0%
GTGTTTCACAAGAATAACAT+TGG + chr1_4:61993461-61993480 Msa0175850:CDS 30.0%
!! TTACTTTTGTCGATATGCAA+TGG + chr1_4:61993727-61993746 Msa0175850:intron 30.0%
!!! ACTTTTTCACAAACACGTAA+TGG - chr1_4:61993822-61993841 None:intergenic 30.0%
!! TCATAAATTTGCTAAGGGAT+TGG + chr1_4:61993893-61993912 Msa0175850:intron 30.0%
!! CATAAATTTGCTAAGGGATT+GGG + chr1_4:61993894-61993913 Msa0175850:intron 30.0%
GACACAATATAAAAGTAGAC+CGG - chr1_4:61994105-61994124 None:intergenic 30.0%
TTGATGTTCCCTAAGTTATA+CGG + chr1_4:61994274-61994293 Msa0175850:intron 30.0%
AGATATTGTCTCCTTCAATA+GGG - chr1_4:61994442-61994461 None:intergenic 30.0%
AAGATATTGTCTCCTTCAAT+AGG - chr1_4:61994443-61994462 None:intergenic 30.0%
CACTCATTTAAGAAAGCTAA+AGG - chr1_4:61994478-61994497 None:intergenic 30.0%
ATACCATATAACCTGTGAAA+CGG - chr1_4:61994698-61994717 None:intergenic 30.0%
!!! AAGGGCTTTTTAGAGTATTT+AGG + chr1_4:61994746-61994765 Msa0175850:intron 30.0%
!!! GCTTTTTAGAGTATTTAGGT+TGG + chr1_4:61994750-61994769 Msa0175850:intron 30.0%
AGTCAATGTAATATGACCAA+CGG + chr1_4:61994793-61994812 Msa0175850:intron 30.0%
! TCAAATTAGTTGACTTAGTC+TGG + chr1_4:61994816-61994835 Msa0175850:intron 30.0%
! CAAATTAGTTGACTTAGTCT+GGG + chr1_4:61994817-61994836 Msa0175850:intron 30.0%
! AAATTAGTTGACTTAGTCTG+GGG + chr1_4:61994818-61994837 Msa0175850:intron 30.0%
! TTTTCTGAACAAGAATAGTG+TGG - chr1_4:61994901-61994920 None:intergenic 30.0%
! GGAATTGGTAAGTTGAAATT+TGG + chr1_4:61994976-61994995 Msa0175850:intron 30.0%
! TTGGTAAGTTGAAATTTGGT+CGG + chr1_4:61994980-61994999 Msa0175850:intron 30.0%
AGAAGTTGTTTGGAGATATT+TGG + chr1_4:61995035-61995054 Msa0175850:intron 30.0%
AAATCGATAGGTACAAATCA+TGG + chr1_4:61995201-61995220 Msa0175850:intron 30.0%
TTATTGACAGAACATAAGTG+AGG + chr1_4:61995284-61995303 Msa0175850:intron 30.0%
TATTGACAGAACATAAGTGA+GGG + chr1_4:61995285-61995304 Msa0175850:intron 30.0%
! ATTTTTGTAGAAAGACTGAC+TGG + chr1_4:61995313-61995332 Msa0175850:intron 30.0%
! TTTTTGTAGAAAGACTGACT+GGG + chr1_4:61995314-61995333 Msa0175850:intron 30.0%
! TACCTTTTCTCATTGCTTAT+TGG - chr1_4:61995398-61995417 None:intergenic 30.0%
TCTTACTATGTCCAATCAAA+CGG - chr1_4:61995435-61995454 None:intergenic 30.0%
! CAGCTTCAATAATGCTTTTA+TGG + chr1_4:61995472-61995491 Msa0175850:intron 30.0%
! GCTTCAATAATGCTTTTATG+GGG + chr1_4:61995474-61995493 Msa0175850:intron 30.0%
! CTTCAATAATGCTTTTATGG+GGG + chr1_4:61995475-61995494 Msa0175850:intron 30.0%
! TTCAATAATGCTTTTATGGG+GGG + chr1_4:61995476-61995495 Msa0175850:intron 30.0%
ATGGTAAACTTGAAGACAAA+GGG - chr1_4:61995825-61995844 None:intergenic 30.0%
! TTTGTCTTCAAGTTTACCAT+GGG + chr1_4:61995825-61995844 Msa0175850:intron 30.0%
!!! TTTTTTGTTCTTGGGTTGTT+TGG + chr1_4:61995872-61995891 Msa0175850:intron 30.0%
ATTAAAGGAAGGAAACAACT+TGG + chr1_4:61995931-61995950 Msa0175850:intron 30.0%
TATGTTCAAATTTGATGTCC+TGG - chr1_4:61995963-61995982 None:intergenic 30.0%
AGGACATCAAATTTGAACAT+AGG + chr1_4:61995962-61995981 Msa0175850:intron 30.0%
ATCAAATTTGAACATAGGTG+AGG + chr1_4:61995967-61995986 Msa0175850:intron 30.0%
AGTATGAATTTGATGAAGAC+TGG + chr1_4:61996067-61996086 Msa0175850:intron 30.0%
AAATTGCTAGCAAACTTTCA+GGG - chr1_4:61996194-61996213 None:intergenic 30.0%
!! CCAACTTTAAAATCTCAACA+GGG - chr1_4:61996227-61996246 None:intergenic 30.0%
!! TCCAACTTTAAAATCTCAAC+AGG - chr1_4:61996228-61996247 None:intergenic 30.0%
ACCGTTATCCAAAATAAACT+TGG - chr1_4:61996374-61996393 None:intergenic 30.0%
!! AAACAAAGTTAAGGTACTGT+TGG - chr1_4:61996467-61996486 None:intergenic 30.0%
TACTTCACGAAACAAAGTTA+AGG - chr1_4:61996476-61996495 None:intergenic 30.0%
AGAATTTATCCTTGTTAGGA+AGG + chr1_4:61996539-61996558 Msa0175850:intron 30.0%
GAATTTATCCTTGTTAGGAA+GGG + chr1_4:61996540-61996559 Msa0175850:intron 30.0%
!! GTTTTTCTTTAGAGAAGTCA+AGG + chr1_4:61996611-61996630 Msa0175850:intron 30.0%
!! AGTATAATCCACTGATTTCT+AGG + chr1_4:61996888-61996907 Msa0175850:intron 30.0%
GTTGGATAATTCAGAATTGA+TGG + chr1_4:61997045-61997064 Msa0175850:intron 30.0%
!!! AGAAGATTTTGAGTTTCGAT+CGG - chr1_4:61997245-61997264 None:intergenic 30.0%
!! AAATTTGAGGTATTGGCTTT+GGG - chr1_4:61997373-61997392 None:intergenic 30.0%
!! TAAATTTGAGGTATTGGCTT+TGG - chr1_4:61997374-61997393 None:intergenic 30.0%
TACCTCAAATTTACAAAAGG+CGG + chr1_4:61997381-61997400 Msa0175850:CDS 30.0%
TCCAATCATTCTAATGTTTC+TGG + chr1_4:61997419-61997438 Msa0175850:CDS 30.0%
TCCAGAAACATTAGAATGAT+TGG - chr1_4:61997423-61997442 None:intergenic 30.0%
ATGAGAAATCCTTAGGAATT+GGG + chr1_4:61997842-61997861 Msa0175850:exon 30.0%
CTAAGAGAAACGGAAAAGAT+GGG - chr1_4:61992233-61992252 None:intergenic 35.0%
GTGGTAAAGATGGTGAATTA+GGG - chr1_4:61992268-61992287 None:intergenic 35.0%
ATGACAAGTTCTTCATCAGT+GGG - chr1_4:61992468-61992487 None:intergenic 35.0%
AATGACAAGTTCTTCATCAG+TGG - chr1_4:61992469-61992488 None:intergenic 35.0%
CATTTATTACCTGAAACGCA+AGG + chr1_4:61992485-61992504 Msa0175850:CDS 35.0%
GCAATAGCATCAAATCTGAA+GGG - chr1_4:61992522-61992541 None:intergenic 35.0%
AGCAATAGCATCAAATCTGA+AGG - chr1_4:61992523-61992542 None:intergenic 35.0%
ATATCTACAAGAGTGAACCA+TGG + chr1_4:61992550-61992569 Msa0175850:CDS 35.0%
TATCTACAAGAGTGAACCAT+GGG + chr1_4:61992551-61992570 Msa0175850:CDS 35.0%
TTCTAACCAAAAAGATCCCA+TGG - chr1_4:61992570-61992589 None:intergenic 35.0%
! ATTTAGGTTAACGTTAGGGT+TGG + chr1_4:61992683-61992702 Msa0175850:intron 35.0%
! TTTAGGTTAACGTTAGGGTT+GGG + chr1_4:61992684-61992703 Msa0175850:intron 35.0%
!!! GTGGTATTTTTTCAGTGCAT+TGG + chr1_4:61992899-61992918 Msa0175850:CDS 35.0%
! TTGGACAAGAAGTATGGAAA+TGG + chr1_4:61992918-61992937 Msa0175850:CDS 35.0%
! TGGACAAGAAGTATGGAAAT+GGG + chr1_4:61992919-61992938 Msa0175850:CDS 35.0%
TGACGGTAAGAGAACAAATT+GGG + chr1_4:61993067-61993086 Msa0175850:CDS 35.0%
TGTTGTCGTTGCATTTACTT+AGG + chr1_4:61993224-61993243 Msa0175850:intron 35.0%
GTTGTCGTTGCATTTACTTA+GGG + chr1_4:61993225-61993244 Msa0175850:intron 35.0%
!! GAAGCATTGTTGTTTATACG+TGG + chr1_4:61993277-61993296 Msa0175850:intron 35.0%
! ACCTTTTGTTGAAGAAGAGT+GGG + chr1_4:61993508-61993527 Msa0175850:CDS 35.0%
GAAATATGGAAAGTTGCTGT+CGG + chr1_4:61993846-61993865 Msa0175850:intron 35.0%
AATTAAAACTCCGGACATTC+CGG - chr1_4:61994034-61994053 None:intergenic 35.0%
TTTCTCCTTTCCATTTATGC+CGG + chr1_4:61994127-61994146 Msa0175850:intron 35.0%
CATAAATGGAAAGGAGAAAG+CGG - chr1_4:61994126-61994145 None:intergenic 35.0%
TTTCTCCTTTCCATTTATGC+CGG + chr1_4:61994127-61994146 Msa0175850:intron 35.0%
AGAAAAGTAGACGAACATGA+AGG - chr1_4:61994214-61994233 None:intergenic 35.0%
!! TTCGTCTACTTTTCTATCCT+TGG + chr1_4:61994219-61994238 Msa0175850:intron 35.0%
! CTTTTCTATCCTTGGCTTAA+TGG + chr1_4:61994227-61994246 Msa0175850:intron 35.0%
CCAAAAAGCCGTATAACTTA+GGG - chr1_4:61994285-61994304 None:intergenic 35.0%
! CCTAAGTTATACGGCTTTTT+GGG + chr1_4:61994283-61994302 Msa0175850:intron 35.0%
! CTAAGTTATACGGCTTTTTG+GGG + chr1_4:61994284-61994303 Msa0175850:intron 35.0%
!!! AAAATTTTGATTGTGCGGAC+AGG - chr1_4:61994353-61994372 None:intergenic 35.0%
! ACAAAGATAAGAAGTGCACA+AGG - chr1_4:61994509-61994528 None:intergenic 35.0%
GTGCACTTCTTATCTTTGTA+TGG + chr1_4:61994510-61994529 Msa0175850:intron 35.0%
ATTCTAGATTGTCTATCCCT+GGG - chr1_4:61994561-61994580 None:intergenic 35.0%
! TAGACAATCTAGAATCACTG+AGG + chr1_4:61994566-61994585 Msa0175850:intron 35.0%
! AGACAATCTAGAATCACTGA+GGG + chr1_4:61994567-61994586 Msa0175850:intron 35.0%
AAGTCAACTAATTTGACCGT+TGG - chr1_4:61994812-61994831 None:intergenic 35.0%
TGTGGTATCTCCAACATAAA+GGG - chr1_4:61994883-61994902 None:intergenic 35.0%
! TGGTAAGTTGAAATTTGGTC+GGG + chr1_4:61994981-61995000 Msa0175850:intron 35.0%
!!! ACCATTTTTTCGACATGTTG+AGG + chr1_4:61995008-61995027 Msa0175850:intron 35.0%
!! TTGAGGCTTTAGAAGTTGTT+TGG + chr1_4:61995025-61995044 Msa0175850:intron 35.0%
ACAAGTACTCCCTTAATACA+CGG - chr1_4:61995087-61995106 None:intergenic 35.0%
!! ATAGCTACCTACTTGTTGTA+TGG + chr1_4:61995149-61995168 Msa0175850:intron 35.0%
! TTTAAGATGCTGCTAGATTC+AGG - chr1_4:61995184-61995203 None:intergenic 35.0%
TAGCAGCATCTTAAATCGAT+AGG + chr1_4:61995189-61995208 Msa0175850:intron 35.0%
CTACGTCATATCGATAGAAT+GGG - chr1_4:61995238-61995257 None:intergenic 35.0%
TCTACGTCATATCGATAGAA+TGG - chr1_4:61995239-61995258 None:intergenic 35.0%
TGACGTAGATGATGAAAACA+AGG + chr1_4:61995250-61995269 Msa0175850:intron 35.0%
! TTTTGTAGAAAGACTGACTG+GGG + chr1_4:61995315-61995334 Msa0175850:intron 35.0%
TGGTGATATTAGCATATGTG+AGG + chr1_4:61995352-61995371 Msa0175850:intron 35.0%
CACCAATAAGCAATGAGAAA+AGG + chr1_4:61995393-61995412 Msa0175850:intron 35.0%
AAATATCAGCACCGTTTGAT+TGG + chr1_4:61995421-61995440 Msa0175850:intron 35.0%
TGATTGGACATAGTAAGAAC+CGG + chr1_4:61995437-61995456 Msa0175850:intron 35.0%
ATAGTAAGAACCGGTTAGAA+AGG + chr1_4:61995446-61995465 Msa0175850:intron 35.0%
! TCAATAATGCTTTTATGGGG+GGG + chr1_4:61995477-61995496 Msa0175850:intron 35.0%
ACGGTAACAATTTAAGCCTT+TGG + chr1_4:61995506-61995525 Msa0175850:intron 35.0%
ATTTGAAGACGCTAATCCAA+AGG - chr1_4:61995525-61995544 None:intergenic 35.0%
!! TTGGATTAGCGTCTTCAAAT+TGG + chr1_4:61995525-61995544 Msa0175850:intron 35.0%
! TCGGTTTACATTTTCGAAAG+AGG - chr1_4:61995599-61995618 None:intergenic 35.0%
! GTGGCATTGAGTTGTTTAAT+CGG - chr1_4:61995618-61995637 None:intergenic 35.0%
CATGGTAAACTTGAAGACAA+AGG - chr1_4:61995826-61995845 None:intergenic 35.0%
! CTTTGTCTTCAAGTTTACCA+TGG + chr1_4:61995824-61995843 Msa0175850:intron 35.0%
! TTCAAGTTTACCATGGGAAT+TGG + chr1_4:61995831-61995850 Msa0175850:intron 35.0%
AAATTTGAACATAGGTGAGG+AGG + chr1_4:61995970-61995989 Msa0175850:intron 35.0%
TACTAAATACCTAGGGGTTT+GGG - chr1_4:61996051-61996070 None:intergenic 35.0%
ATACTAAATACCTAGGGGTT+TGG - chr1_4:61996052-61996071 None:intergenic 35.0%
GAAATTGCTAGCAAACTTTC+AGG - chr1_4:61996195-61996214 None:intergenic 35.0%
AAAATCTCAACAGGGAAAGT+CGG - chr1_4:61996219-61996238 None:intergenic 35.0%
!!! CCCTGTTGAGATTTTAAAGT+TGG + chr1_4:61996224-61996243 Msa0175850:intron 35.0%
! AGTTATGAAGTAGCTTGTAG+AGG + chr1_4:61996303-61996322 Msa0175850:intron 35.0%
! TAGCTTGTAGAGGATGAATT+GGG + chr1_4:61996334-61996353 Msa0175850:intron 35.0%
TTGGACATAGACTTGCAATA+AGG - chr1_4:61996448-61996467 None:intergenic 35.0%
TGTCTGGGAAAATTGTACTT+TGG + chr1_4:61996513-61996532 Msa0175850:intron 35.0%
GTCTGGGAAAATTGTACTTT+GGG + chr1_4:61996514-61996533 Msa0175850:intron 35.0%
TCTGGGAAAATTGTACTTTG+GGG + chr1_4:61996515-61996534 Msa0175850:intron 35.0%
GGGAAGAATTTATCCTTGTT+AGG + chr1_4:61996535-61996554 Msa0175850:intron 35.0%
ACATGAATGACCTCTAATGA+GGG - chr1_4:61996593-61996612 None:intergenic 35.0%
AACATGAATGACCTCTAATG+AGG - chr1_4:61996594-61996613 None:intergenic 35.0%
GGTGATTGATAGAAATTCAG+TGG + chr1_4:61996661-61996680 Msa0175850:intron 35.0%
ACAAGTCACGAAGTGAAAAT+AGG - chr1_4:61996828-61996847 None:intergenic 35.0%
! TTTCTAGGCCGTATTTTTCT+TGG + chr1_4:61996903-61996922 Msa0175850:intron 35.0%
AAGGGACTTCAAATAGATTG+AGG - chr1_4:61997004-61997023 None:intergenic 35.0%
TAACATTTCGTCATGTGTAC+AGG + chr1_4:61997175-61997194 Msa0175850:intron 35.0%
!!! ATCAAGTGGAGTTTTGTTGT+TGG - chr1_4:61997210-61997229 None:intergenic 35.0%
! TGAGTTTTCATCACCTGAAA+AGG + chr1_4:61997292-61997311 Msa0175850:CDS 35.0%
! TGCTTAGATTCATCCTTTTC+AGG - chr1_4:61997308-61997327 None:intergenic 35.0%
GCAGACAGAAAATGTTTCTT+CGG - chr1_4:61997551-61997570 None:intergenic 35.0%
AGAATCACTTGAATCGAAGA+AGG + chr1_4:61997592-61997611 Msa0175850:CDS 35.0%
TTGATGTACTTTGCAACACT+CGG - chr1_4:61997680-61997699 None:intergenic 35.0%
! TTTGCTGAGATTTTCAACAC+GGG - chr1_4:61997798-61997817 None:intergenic 35.0%
! CTTTGCTGAGATTTTCAACA+CGG - chr1_4:61997799-61997818 None:intergenic 35.0%
! GATGATGATGAGAAATCCTT+AGG + chr1_4:61997835-61997854 Msa0175850:CDS 35.0%
GATGAGAAATCCTTAGGAAT+TGG + chr1_4:61997841-61997860 Msa0175850:exon 35.0%
AACTGGTACATCATCATACA+AGG - chr1_4:61997880-61997899 None:intergenic 35.0%
AAAGATGGGTCCTTGATTGA+GGG - chr1_4:61992219-61992238 None:intergenic 40.0%
AAAAGATGGGTCCTTGATTG+AGG - chr1_4:61992220-61992239 None:intergenic 40.0%
CCTAAGAGAAACGGAAAAGA+TGG - chr1_4:61992234-61992253 None:intergenic 40.0%
! CCATCTTTTCCGTTTCTCTT+AGG + chr1_4:61992231-61992250 Msa0175850:five_prime_UTR 40.0%
GGTGGTAAAGATGGTGAATT+AGG - chr1_4:61992269-61992288 None:intergenic 40.0%
! CCATTTGGTGAAGGAAAAAG+GGG - chr1_4:61992302-61992321 None:intergenic 40.0%
! CCCATTTGGTGAAGGAAAAA+GGG - chr1_4:61992303-61992322 None:intergenic 40.0%
! CCCTTTTTCCTTCACCAAAT+GGG + chr1_4:61992300-61992319 Msa0175850:exon 40.0%
! ACCCATTTGGTGAAGGAAAA+AGG - chr1_4:61992304-61992323 None:intergenic 40.0%
! ATGGTACTGAAACTGTGAGT+GGG - chr1_4:61992383-61992402 None:intergenic 40.0%
AAACCTAAAACCAGGAGCAA+GGG - chr1_4:61992442-61992461 None:intergenic 40.0%
TGACAAGTTCTTCATCAGTG+GGG - chr1_4:61992467-61992486 None:intergenic 40.0%
! AGTGAACCATGGGATCTTTT+TGG + chr1_4:61992561-61992580 Msa0175850:CDS 40.0%
TGTGTTAATGTGAATGGTGG+TGG + chr1_4:61992829-61992848 Msa0175850:intron 40.0%
CACTGAAAAAATACCACTCC+TGG - chr1_4:61992896-61992915 None:intergenic 40.0%
AGTGCATTGGACAAGAAGTA+TGG + chr1_4:61992912-61992931 Msa0175850:CDS 40.0%
! GGACAAGAAGTATGGAAATG+GGG + chr1_4:61992920-61992939 Msa0175850:CDS 40.0%
! GACAAGAAGTATGGAAATGG+GGG + chr1_4:61992921-61992940 Msa0175850:CDS 40.0%
AAGACTCTGGTGTTTCATAG+CGG + chr1_4:61993035-61993054 Msa0175850:CDS 40.0%
! CAATTTGTTCTCTTACCGTC+AGG - chr1_4:61993068-61993087 None:intergenic 40.0%
CTGACGGTAAGAGAACAAAT+TGG + chr1_4:61993066-61993085 Msa0175850:CDS 40.0%
!! CAGACTTGTTGAGGAAGAAT+TGG + chr1_4:61993103-61993122 Msa0175850:CDS 40.0%
TTGTTGAGGAAGAATTGGAG+AGG + chr1_4:61993108-61993127 Msa0175850:CDS 40.0%
TGTTGAGGAAGAATTGGAGA+GGG + chr1_4:61993109-61993128 Msa0175850:CDS 40.0%
TTGTGCATTTCTCTGTTGGA+TGG + chr1_4:61993412-61993431 Msa0175850:intron 40.0%
AATAACATTGGGCCTCCAAA+TGG + chr1_4:61993473-61993492 Msa0175850:CDS 40.0%
! CACCTTTTGTTGAAGAAGAG+TGG + chr1_4:61993507-61993526 Msa0175850:CDS 40.0%
TCCCACTCTTCTTCAACAAA+AGG - chr1_4:61993512-61993531 None:intergenic 40.0%
AGTAATGGTCCTGTGAGTAA+TGG + chr1_4:61993569-61993588 Msa0175850:CDS 40.0%
AGGAAGAAATCATGTTGTGC+AGG + chr1_4:61993646-61993665 Msa0175850:CDS 40.0%
AAATTCATGACCGGAATGTC+CGG + chr1_4:61994021-61994040 Msa0175850:intron 40.0%
TAGACGAACATGAAGGACAA+GGG - chr1_4:61994207-61994226 None:intergenic 40.0%
AAGAAAGGTCCATTAAGCCA+AGG - chr1_4:61994239-61994258 None:intergenic 40.0%
! CCCTAAGTTATACGGCTTTT+TGG + chr1_4:61994282-61994301 Msa0175850:intron 40.0%
CCCAAAAAGCCGTATAACTT+AGG - chr1_4:61994286-61994305 None:intergenic 40.0%
GATTCTAGATTGTCTATCCC+TGG - chr1_4:61994562-61994581 None:intergenic 40.0%
TTGCAAACCAAGCTCAATGT+AGG + chr1_4:61994603-61994622 Msa0175850:intron 40.0%
CATATAACCTGTGAAACGGT+TGG - chr1_4:61994694-61994713 None:intergenic 40.0%
CAACCGTTTCACAGGTTATA+TGG + chr1_4:61994692-61994711 Msa0175850:intron 40.0%
TATACTTGCAATATGGCTCC+TGG + chr1_4:61994715-61994734 Msa0175850:intron 40.0%
GTGTGGTATCTCCAACATAA+AGG - chr1_4:61994884-61994903 None:intergenic 40.0%
TTACTCACGTGTCATGGAAT+TGG + chr1_4:61994961-61994980 Msa0175850:intron 40.0%
GCCTCAACATGTCGAAAAAA+TGG - chr1_4:61995012-61995031 None:intergenic 40.0%
TGGAAATTATGGACGGTCAT+TGG + chr1_4:61995055-61995074 Msa0175850:intron 40.0%
!! CTACCTACTTGTTGTATGGT+GGG + chr1_4:61995153-61995172 Msa0175850:intron 40.0%
TTCTCATTGCTTATTGGTGC+CGG - chr1_4:61995392-61995411 None:intergenic 40.0%
! TTTTATGGGGGGGTAAAAGA+CGG + chr1_4:61995487-61995506 Msa0175850:intron 40.0%
AAACACGGTAGAAGGAGAAA+AGG - chr1_4:61995766-61995785 None:intergenic 40.0%
ACCGTGTTTCTTGCCAATTT+CGG + chr1_4:61995777-61995796 Msa0175850:intron 40.0%
AACTTGAAGACAAAGGGAAG+AGG - chr1_4:61995819-61995838 None:intergenic 40.0%
TTACCATGGGAATTGGATGA+AGG + chr1_4:61995838-61995857 Msa0175850:intron 40.0%
TAACCTTCATCCAATTCCCA+TGG - chr1_4:61995844-61995863 None:intergenic 40.0%
! GTTCTTGGGTTGTTTGGTAA+CGG + chr1_4:61995878-61995897 Msa0175850:intron 40.0%
ACTAAATACCTAGGGGTTTG+GGG - chr1_4:61996050-61996069 None:intergenic 40.0%
ATCTTCAACGCATTCAGAGA+TGG - chr1_4:61996275-61996294 None:intergenic 40.0%
! GTAGCTTGTAGAGGATGAAT+TGG + chr1_4:61996333-61996352 Msa0175850:intron 40.0%
GTTCGATGGTACATCTAGAA+AGG - chr1_4:61996414-61996433 None:intergenic 40.0%
GTATTTCTCCCTTCCTAACA+AGG - chr1_4:61996551-61996570 None:intergenic 40.0%
! GACTACTGAGGCTTTTGTTA+AGG + chr1_4:61996640-61996659 Msa0175850:intron 40.0%
AGCTGGGTATAATCCTCTTT+GGG + chr1_4:61996745-61996764 Msa0175850:intron 40.0%
GTTTGTTCTCATACCCAAAG+AGG - chr1_4:61996761-61996780 None:intergenic 40.0%
AAATACGGCCTAGAAATCAG+TGG - chr1_4:61996899-61996918 None:intergenic 40.0%
! TTCTTGTTCCTCTTTTCTCG+CGG + chr1_4:61996934-61996953 Msa0175850:intron 40.0%
!! AGGTATTGGCTTTGGGTTAT+CGG - chr1_4:61997366-61997385 None:intergenic 40.0%
AGAAAATGTTTCTTCGGAGC+AGG - chr1_4:61997545-61997564 None:intergenic 40.0%
! GAAACATTTTCTGTCTGCAC+TGG + chr1_4:61997553-61997572 Msa0175850:CDS 40.0%
CGATTCAAGTGATTCTAGCA+GGG - chr1_4:61997588-61997607 None:intergenic 40.0%
TCGATTCAAGTGATTCTAGC+AGG - chr1_4:61997589-61997608 None:intergenic 40.0%
GGACTGGAGAATGTTAATCA+TGG - chr1_4:61997777-61997796 None:intergenic 40.0%
AAATCTCAGCAAAGAGAACG+AGG + chr1_4:61997805-61997824 Msa0175850:CDS 40.0%
GAGGGTCAAGCAACAAATGA+GGG - chr1_4:61992201-61992220 None:intergenic 45.0%
TGAGGGTCAAGCAACAAATG+AGG - chr1_4:61992202-61992221 None:intergenic 45.0%
! TGTTGCTTGACCCTCAATCA+AGG + chr1_4:61992206-61992225 Msa0175850:five_prime_UTR 45.0%
TTTGGTGAAGGAAAAAGGGG+TGG - chr1_4:61992299-61992318 None:intergenic 45.0%
! CCCCTTTTTCCTTCACCAAA+TGG + chr1_4:61992299-61992318 Msa0175850:exon 45.0%
! TGGTACTGAAACTGTGAGTG+GGG - chr1_4:61992382-61992401 None:intergenic 45.0%
! GATGGTACTGAAACTGTGAG+TGG - chr1_4:61992384-61992403 None:intergenic 45.0%
GAAACCTAAAACCAGGAGCA+AGG - chr1_4:61992443-61992462 None:intergenic 45.0%
TACCTGAAACGCAAGGTTTC+TGG + chr1_4:61992492-61992511 Msa0175850:CDS 45.0%
TTCCAGAAACCTTGCGTTTC+AGG - chr1_4:61992497-61992516 None:intergenic 45.0%
AAAATACCACTCCTGGTCTC+TGG - chr1_4:61992889-61992908 None:intergenic 45.0%
TTTCCAGTACCCTTGAAGAG+TGG - chr1_4:61992961-61992980 None:intergenic 45.0%
!! GCATGAGTACAGACTTGTTG+AGG + chr1_4:61993094-61993113 Msa0175850:CDS 45.0%
!! GTTTGCTATGTGCTGCAATG+TGG + chr1_4:61993355-61993374 Msa0175850:intron 45.0%
ATTTCTCTGTTGGATGGAGC+AGG + chr1_4:61993418-61993437 Msa0175850:intron 45.0%
GTTGAAGAAGAGTGGGAAGA+AGG + chr1_4:61993515-61993534 Msa0175850:CDS 45.0%
AAGGATCAGGAATGGTTCCT+GGG + chr1_4:61993534-61993553 Msa0175850:CDS 45.0%
TCAACAGGACCATTACTCAC+AGG - chr1_4:61993581-61993600 None:intergenic 45.0%
CATCTGCGTCTTGAATGGAA+CGG + chr1_4:61993605-61993624 Msa0175850:CDS 45.0%
GGTGGAGTTTCATGCAATGA+AGG + chr1_4:61993626-61993645 Msa0175850:CDS 45.0%
AAAAAGACTGGGAGAGAACG+AGG - chr1_4:61993677-61993696 None:intergenic 45.0%
! TCGTTCTCTCCCAGTCTTTT+TGG + chr1_4:61993676-61993695 Msa0175850:intron 45.0%
! CGTTCTCTCCCAGTCTTTTT+GGG + chr1_4:61993677-61993696 Msa0175850:intron 45.0%
GATACGCACCCAAAAAGACT+GGG - chr1_4:61993688-61993707 None:intergenic 45.0%
AGATACGCACCCAAAAAGAC+TGG - chr1_4:61993689-61993708 None:intergenic 45.0%
TGTTCATCACGTGCTAGTTC+TGG + chr1_4:61994059-61994078 Msa0175850:intron 45.0%
GTAGACGAACATGAAGGACA+AGG - chr1_4:61994208-61994227 None:intergenic 45.0%
!!! TATACGGCTTTTTGGGGTTG+AGG + chr1_4:61994290-61994309 Msa0175850:intron 45.0%
!!! ATACGGCTTTTTGGGGTTGA+GGG + chr1_4:61994291-61994310 Msa0175850:intron 45.0%
TTGGGCAGAATCCCTATTGA+AGG + chr1_4:61994428-61994447 Msa0175850:intron 45.0%
TAGATTGTCTATCCCTGGGA+AGG - chr1_4:61994557-61994576 None:intergenic 45.0%
CAAACCAAGCTCAATGTAGG+TGG + chr1_4:61994606-61994625 Msa0175850:intron 45.0%
GTTTCCACCTACATTGAGCT+TGG - chr1_4:61994613-61994632 None:intergenic 45.0%
ATGTAGGTGGAAACTCCATG+TGG + chr1_4:61994619-61994638 Msa0175850:intron 45.0%
!!! CGTGTGTGTTGGTTTTGAAC+TGG + chr1_4:61994645-61994664 Msa0175850:intron 45.0%
!!! GTGTTGGTTTTGAACTGGCT+CGG + chr1_4:61994650-61994669 Msa0175850:intron 45.0%
AAAAGCCCTTGCAAATAGCC+AGG - chr1_4:61994736-61994755 None:intergenic 45.0%
! AGTTGACTTAGTCTGGGGAT+CGG + chr1_4:61994823-61994842 Msa0175850:intron 45.0%
CCAACATAAAGGGATCACTC+TGG - chr1_4:61994873-61994892 None:intergenic 45.0%
CCAGAGTGATCCCTTTATGT+TGG + chr1_4:61994870-61994889 Msa0175850:intron 45.0%
GAGAAGTTACTCACGTGTCA+TGG + chr1_4:61994955-61994974 Msa0175850:intron 45.0%
TTGGATCCTGCCGTGTATTA+AGG + chr1_4:61995074-61995093 Msa0175850:intron 45.0%
TGGATCCTGCCGTGTATTAA+GGG + chr1_4:61995075-61995094 Msa0175850:intron 45.0%
!! GCTACCTACTTGTTGTATGG+TGG + chr1_4:61995152-61995171 Msa0175850:intron 45.0%
GATCCCACCATACAACAAGT+AGG - chr1_4:61995159-61995178 None:intergenic 45.0%
AAGACTGACTGGGGTAGATA+AGG + chr1_4:61995324-61995343 Msa0175850:intron 45.0%
CTGGGGTAGATAAGGAAGAA+TGG + chr1_4:61995332-61995351 Msa0175850:intron 45.0%
TGAGGTTATCACTGATCAGC+CGG + chr1_4:61995370-61995389 Msa0175850:intron 45.0%
GAAGCTGACACCTTTCTAAC+CGG - chr1_4:61995459-61995478 None:intergenic 45.0%
ATCATGGCCAGAAGAAGTTG+GGG - chr1_4:61995570-61995589 None:intergenic 45.0%
CATCATGGCCAGAAGAAGTT+GGG - chr1_4:61995571-61995590 None:intergenic 45.0%
CAACTTCTTCTGGCCATGAT+GGG + chr1_4:61995570-61995589 Msa0175850:intron 45.0%
!! ATGGAGGGGTTTTGTAGAAG+AGG - chr1_4:61995640-61995659 None:intergenic 45.0%
GAGATGGGGAATTAATGGAG+GGG - chr1_4:61995654-61995673 None:intergenic 45.0%
CGAGATGGGGAATTAATGGA+GGG - chr1_4:61995655-61995674 None:intergenic 45.0%
TCGAGATGGGGAATTAATGG+AGG - chr1_4:61995656-61995675 None:intergenic 45.0%
GACTCGAGATGGGGAATTAA+TGG - chr1_4:61995659-61995678 None:intergenic 45.0%
! AACCTTCTTGACTCGAGATG+GGG - chr1_4:61995668-61995687 None:intergenic 45.0%
! CAACCTTCTTGACTCGAGAT+GGG - chr1_4:61995669-61995688 None:intergenic 45.0%
! TCAACCTTCTTGACTCGAGA+TGG - chr1_4:61995670-61995689 None:intergenic 45.0%
TTGGCAAGAAACACGGTAGA+AGG - chr1_4:61995774-61995793 None:intergenic 45.0%
CCCGAAATTGGCAAGAAACA+CGG - chr1_4:61995781-61995800 None:intergenic 45.0%
CCGTGTTTCTTGCCAATTTC+GGG + chr1_4:61995778-61995797 Msa0175850:intron 45.0%
CGTGTTTCTTGCCAATTTCG+GGG + chr1_4:61995779-61995798 Msa0175850:intron 45.0%
GAAAGACTGAACCCCGAAAT+TGG - chr1_4:61995793-61995812 None:intergenic 45.0%
TGAAGACAAAGGGAAGAGGA+GGG - chr1_4:61995815-61995834 None:intergenic 45.0%
TTGAAGACAAAGGGAAGAGG+AGG - chr1_4:61995816-61995835 None:intergenic 45.0%
!! TTGGGTTGTTTGGTAACGGA+AGG + chr1_4:61995882-61995901 Msa0175850:intron 45.0%
CTAGTGGAACAGGCGATTAA+AGG + chr1_4:61995916-61995935 Msa0175850:intron 45.0%
TGGAACAGGCGATTAAAGGA+AGG + chr1_4:61995920-61995939 Msa0175850:intron 45.0%
GGAAGGAAACAACTTGGTAG+AGG + chr1_4:61995937-61995956 Msa0175850:intron 45.0%
CTAGCAAACTTTCAGGGCTT+TGG - chr1_4:61996188-61996207 None:intergenic 45.0%
AACCCCATATGATCCAAGTC+TGG + chr1_4:61996247-61996266 Msa0175850:intron 45.0%
AGCCAGACTTGGATCATATG+GGG - chr1_4:61996252-61996271 None:intergenic 45.0%
GAGCCAGACTTGGATCATAT+GGG - chr1_4:61996253-61996272 None:intergenic 45.0%
!!! AGGACTCGTTTTGAGTTCGA+TGG - chr1_4:61996428-61996447 None:intergenic 45.0%
TTTCGTGAAGTATACCCGCA+TGG + chr1_4:61996484-61996503 Msa0175850:intron 45.0%
TTCGTGAAGTATACCCGCAT+GGG + chr1_4:61996485-61996504 Msa0175850:intron 45.0%
TTTCCAACCACCCTCATTAG+AGG + chr1_4:61996580-61996599 Msa0175850:intron 45.0%
TGAATGACCTCTAATGAGGG+TGG - chr1_4:61996590-61996609 None:intergenic 45.0%
TCAAGGGTAGTTGACTACTG+AGG + chr1_4:61996628-61996647 Msa0175850:intron 45.0%
AAATAGCCAGAACTCTGAGC+TGG + chr1_4:61996728-61996747 Msa0175850:intron 45.0%
AATAGCCAGAACTCTGAGCT+GGG + chr1_4:61996729-61996748 Msa0175850:intron 45.0%
TTATACCCAGCTCAGAGTTC+TGG - chr1_4:61996737-61996756 None:intergenic 45.0%
GAGCTGGGTATAATCCTCTT+TGG + chr1_4:61996744-61996763 Msa0175850:intron 45.0%
TTCACATTCCGCGAGAAAAG+AGG - chr1_4:61996945-61996964 None:intergenic 45.0%
! ATCTTCTTGCTGTGTGCAAG+AGG + chr1_4:61997258-61997277 Msa0175850:CDS 45.0%
! TCTTCTTGCTGTGTGCAAGA+GGG + chr1_4:61997259-61997278 Msa0175850:CDS 45.0%
!! TTGGCTTTGGGTTATCGGTT+GGG - chr1_4:61997361-61997380 None:intergenic 45.0%
!! ATTGGCTTTGGGTTATCGGT+TGG - chr1_4:61997362-61997381 None:intergenic 45.0%
! CGCCGCCTTTTGTAAATTTG+AGG - chr1_4:61997386-61997405 None:intergenic 45.0%
TTCATTCCACCCTAACAGTC+AGG + chr1_4:61997445-61997464 Msa0175850:CDS 45.0%
AGCATGGATCCTGACTGTTA+GGG - chr1_4:61997457-61997476 None:intergenic 45.0%
ATGTTTCTTCGGAGCAGGTT+TGG - chr1_4:61997540-61997559 None:intergenic 45.0%
! ACATTTTCTGTCTGCACTGG+TGG + chr1_4:61997556-61997575 Msa0175850:CDS 45.0%
ATGTACTTTGCAACACTCGG+AGG - chr1_4:61997677-61997696 None:intergenic 45.0%
!! ACAGAAGCTTGGTGTTGAGA+AGG + chr1_4:61997718-61997737 Msa0175850:CDS 45.0%
! TGAGATTTTCAACACGGGAC+TGG - chr1_4:61997793-61997812 None:intergenic 45.0%
GAGATCACTCCCAATTCCTA+AGG - chr1_4:61997854-61997873 None:intergenic 45.0%
TCAGCGCAGCCTAAGAGAAA+CGG - chr1_4:61992243-61992262 None:intergenic 50.0%
! CTTCGTGACCCATTTGGTGA+AGG - chr1_4:61992311-61992330 None:intergenic 50.0%
GAGGTTCTTCGTGACCCATT+TGG - chr1_4:61992317-61992336 None:intergenic 50.0%
CTGAAACTGTGAGTGGGGAA+GGG - chr1_4:61992377-61992396 None:intergenic 50.0%
ACTGAAACTGTGAGTGGGGA+AGG - chr1_4:61992378-61992397 None:intergenic 50.0%
AAACCAGGAGCAAGGGAAGT+TGG - chr1_4:61992435-61992454 None:intergenic 50.0%
!! CTTCCCTTGCTCCTGGTTTT+AGG + chr1_4:61992436-61992455 Msa0175850:CDS 50.0%
GTGGGGTGAAACCTAAAACC+AGG - chr1_4:61992450-61992469 None:intergenic 50.0%
! AGAAGTATGGAAATGGGGGC+AGG + chr1_4:61992925-61992944 Msa0175850:CDS 50.0%
AAATGGGGGCAGGATGAACA+GGG + chr1_4:61992935-61992954 Msa0175850:CDS 50.0%
ATGAACAGGGCCACTCTTCA+AGG + chr1_4:61992948-61992967 Msa0175850:CDS 50.0%
TGAACAGGGCCACTCTTCAA+GGG + chr1_4:61992949-61992968 Msa0175850:CDS 50.0%
!! CAAGGGTACTGGAAAGCTAC+TGG + chr1_4:61992966-61992985 Msa0175850:CDS 50.0%
GTCCAGTGAAGCATGACCTA+AGG + chr1_4:61992997-61993016 Msa0175850:CDS 50.0%
GTCCTTAGGTCATGCTTCAC+TGG - chr1_4:61993002-61993021 None:intergenic 50.0%
AAGCATGACCTAAGGACCGT+GGG + chr1_4:61993005-61993024 Msa0175850:CDS 50.0%
CAGAGTCTTCTTCAACCCCA+CGG - chr1_4:61993024-61993043 None:intergenic 50.0%
TTCTCTTACCGTCAGGAGCA+CGG - chr1_4:61993061-61993080 None:intergenic 50.0%
AGGAAGAATTGGAGAGGGAG+AGG + chr1_4:61993114-61993133 Msa0175850:CDS 50.0%
GGAAGAATTGGAGAGGGAGA+GGG + chr1_4:61993115-61993134 Msa0175850:CDS 50.0%
AATCTCACCTGTGGCTGAGA+GGG - chr1_4:61993152-61993171 None:intergenic 50.0%
AAATCTCACCTGTGGCTGAG+AGG - chr1_4:61993153-61993172 None:intergenic 50.0%
TTGGGCCTCCAAATGGACAA+CGG + chr1_4:61993480-61993499 Msa0175850:CDS 50.0%
GCATACCGTTGTCCATTTGG+AGG - chr1_4:61993488-61993507 None:intergenic 50.0%
GGTGCATACCGTTGTCCATT+TGG - chr1_4:61993491-61993510 None:intergenic 50.0%
GAAGAGTGGGAAGAAGGATC+AGG + chr1_4:61993521-61993540 Msa0175850:CDS 50.0%
GTGGGAAGAAGGATCAGGAA+TGG + chr1_4:61993526-61993545 Msa0175850:CDS 50.0%
GAAGGATCAGGAATGGTTCC+TGG + chr1_4:61993533-61993552 Msa0175850:CDS 50.0%
AGGATCAGGAATGGTTCCTG+GGG + chr1_4:61993535-61993554 Msa0175850:CDS 50.0%
CTCACAGGACCATTACTCAC+AGG - chr1_4:61993566-61993585 None:intergenic 50.0%
TCCATTCAAGACGCAGATGG+CGG - chr1_4:61993604-61993623 None:intergenic 50.0%
CGTTCCATTCAAGACGCAGA+TGG - chr1_4:61993607-61993626 None:intergenic 50.0%
GCGTTCCGGCATAAATGGAA+AGG - chr1_4:61994135-61994154 None:intergenic 50.0%
TTCCATTTATGCCGGAACGC+TGG + chr1_4:61994135-61994154 Msa0175850:intron 50.0%
TTCCAGCGTTCCGGCATAAA+TGG - chr1_4:61994140-61994159 None:intergenic 50.0%
GGAAAGGAGAAAGCGGACAA+GGG - chr1_4:61994163-61994182 None:intergenic 50.0%
TGGAAAGGAGAAAGCGGACA+AGG - chr1_4:61994164-61994183 None:intergenic 50.0%
GCGTTCCGGCATAAATGGAA+AGG - chr1_4:61994135-61994154 None:intergenic 50.0%
TTCCATTTATGCCGGAACGC+TGG + chr1_4:61994135-61994154 Msa0175850:intron 50.0%
TTCCAGCGTTCCGGCATAAA+TGG - chr1_4:61994140-61994159 None:intergenic 50.0%
TTGTGCGGACAGGAATGAGA+AGG - chr1_4:61994343-61994362 None:intergenic 50.0%
ATGCGAAAGTTTGCCTTCCC+AGG + chr1_4:61994541-61994560 Msa0175850:intron 50.0%
TGCGAAAGTTTGCCTTCCCA+GGG + chr1_4:61994542-61994561 Msa0175850:intron 50.0%
CCAACACACACGATACCACA+TGG - chr1_4:61994637-61994656 None:intergenic 50.0%
CCATGTGGTATCGTGTGTGT+TGG + chr1_4:61994634-61994653 Msa0175850:intron 50.0%
ATGGCTCCTGGCTATTTGCA+AGG + chr1_4:61994727-61994746 Msa0175850:intron 50.0%
TGGCTCCTGGCTATTTGCAA+GGG + chr1_4:61994728-61994747 Msa0175850:intron 50.0%
GTACTCCCTTAATACACGGC+AGG - chr1_4:61995083-61995102 None:intergenic 50.0%
CTCTTACCCCCAACTTCTTC+TGG + chr1_4:61995560-61995579 Msa0175850:intron 50.0%
TCATGGCCAGAAGAAGTTGG+GGG - chr1_4:61995569-61995588 None:intergenic 50.0%
CCATCATGGCCAGAAGAAGT+TGG - chr1_4:61995572-61995591 None:intergenic 50.0%
CCAACTTCTTCTGGCCATGA+TGG + chr1_4:61995569-61995588 Msa0175850:intron 50.0%
TCGAAAGAGGATGCCCATCA+TGG - chr1_4:61995586-61995605 None:intergenic 50.0%
!! GAGGGGTTTTGTAGAAGAGG+TGG - chr1_4:61995637-61995656 None:intergenic 50.0%
TTCCCCATCTCGAGTCAAGA+AGG + chr1_4:61995663-61995682 Msa0175850:intron 50.0%
CCTTGACTTCCTTCAACACG+CGG - chr1_4:61995710-61995729 None:intergenic 50.0%
CGCGTGTTGAAGGAAGTCAA+GGG + chr1_4:61995708-61995727 Msa0175850:intron 50.0%
CACGGTAGAAGGAGAAAAGG+AGG - chr1_4:61995763-61995782 None:intergenic 50.0%
!! GGTAACGGAAGGACTCTTGA+TGG + chr1_4:61995893-61995912 Msa0175850:intron 50.0%
! GAAGGACTCTTGATGGCTAG+TGG + chr1_4:61995900-61995919 Msa0175850:intron 50.0%
! CTCTTGATGGCTAGTGGAAC+AGG + chr1_4:61995906-61995925 Msa0175850:intron 50.0%
GAAACAACTTGGTAGAGGCC+AGG + chr1_4:61995942-61995961 Msa0175850:intron 50.0%
GGAGCCAGACTTGGATCATA+TGG - chr1_4:61996254-61996273 None:intergenic 50.0%
TTCAGAGATGGAGCCAGACT+TGG - chr1_4:61996263-61996282 None:intergenic 50.0%
TGACCTCTAATGAGGGTGGT+TGG - chr1_4:61996586-61996605 None:intergenic 50.0%
! GGCAGCTTGTTCACATCAAG+TGG - chr1_4:61997224-61997243 None:intergenic 50.0%
! GGTTATCGGTTGGGGGTAAT+GGG - chr1_4:61997352-61997371 None:intergenic 50.0%
!! TGGCTTTGGGTTATCGGTTG+GGG - chr1_4:61997360-61997379 None:intergenic 50.0%
ATGGATCCTGACTGTTAGGG+TGG - chr1_4:61997454-61997473 None:intergenic 50.0%
GAGCATGGATCCTGACTGTT+AGG - chr1_4:61997458-61997477 None:intergenic 50.0%
GTGGTTATTGTGGACGAGCA+TGG - chr1_4:61997473-61997492 None:intergenic 50.0%
TGTCGCTGCAGTGGTTATTG+TGG - chr1_4:61997483-61997502 None:intergenic 50.0%
AAACCACACCTCAGTTCAGC+CGG + chr1_4:61997616-61997635 Msa0175850:CDS 50.0%
! AAAATCTGCCGGCTGAACTG+AGG - chr1_4:61997627-61997646 None:intergenic 50.0%
TTCGCCAGGTCAAAATCTGC+CGG - chr1_4:61997638-61997657 None:intergenic 50.0%
CACACGATTCAAGATTCGCC+AGG - chr1_4:61997652-61997671 None:intergenic 50.0%
CAGAGTGAGACACAGAAGCT+TGG + chr1_4:61997707-61997726 Msa0175850:CDS 50.0%
! GAAGGAAAAAGGGGTGGTGG+TGG - chr1_4:61992293-61992312 None:intergenic 55.0%
GGTGAAGGAAAAAGGGGTGG+TGG - chr1_4:61992296-61992315 None:intergenic 55.0%
GGGGGTGGAGGAAGTAAAAG+AGG - chr1_4:61992336-61992355 None:intergenic 55.0%
TTGGTTGTGGTGGCAGATGG+GGG - chr1_4:61992354-61992373 None:intergenic 55.0%
GTTGGTTGTGGTGGCAGATG+GGG - chr1_4:61992355-61992374 None:intergenic 55.0%
! GGTTGGTTGTGGTGGCAGAT+GGG - chr1_4:61992356-61992375 None:intergenic 55.0%
AACTGTGAGTGGGGAAGGGT+TGG - chr1_4:61992373-61992392 None:intergenic 55.0%
GAAGCAGAAGCAGAAGGCGA+TGG - chr1_4:61992402-61992421 None:intergenic 55.0%
GCCTTCTGCTTCTGCTTCTG+CGG + chr1_4:61992404-61992423 Msa0175850:CDS 55.0%
!! AGGAGCAAGGGAAGTTGGTG+GGG - chr1_4:61992430-61992449 None:intergenic 55.0%
! CAGGAGCAAGGGAAGTTGGT+GGG - chr1_4:61992431-61992450 None:intergenic 55.0%
AAGGCTGAAGACCAGAGACC+AGG + chr1_4:61992875-61992894 Msa0175850:CDS 55.0%
TGAAGACCAGAGACCAGGAG+TGG + chr1_4:61992880-61992899 Msa0175850:CDS 55.0%
GAAATGGGGGCAGGATGAAC+AGG + chr1_4:61992934-61992953 Msa0175850:CDS 55.0%
GAAGCATGACCTAAGGACCG+TGG + chr1_4:61993004-61993023 Msa0175850:CDS 55.0%
AGCATGACCTAAGGACCGTG+GGG + chr1_4:61993006-61993025 Msa0175850:CDS 55.0%
TCTTCAACCCCACGGTCCTT+AGG - chr1_4:61993016-61993035 None:intergenic 55.0%
CGTGGGGTTGAAGAAGACTC+TGG + chr1_4:61993022-61993041 Msa0175850:CDS 55.0%
AATTGGAGAGGGAGAGGGCT+GGG + chr1_4:61993120-61993139 Msa0175850:CDS 55.0%
TCTCTGTTGGATGGAGCAGG+AGG + chr1_4:61993421-61993440 Msa0175850:intron 55.0%
ACCGCCATCTGCGTCTTGAA+TGG + chr1_4:61993600-61993619 Msa0175850:CDS 55.0%
CTGCGTCTTGAATGGAACGG+TGG + chr1_4:61993608-61993627 Msa0175850:CDS 55.0%
! CTAGAATCACTGAGGGCACG+TGG + chr1_4:61994574-61994593 Msa0175850:intron 55.0%
! GCTCGGAGCACCTTGTAGTT+GGG + chr1_4:61994667-61994686 Msa0175850:intron 55.0%
! CTCGGAGCACCTTGTAGTTG+GGG + chr1_4:61994668-61994687 Msa0175850:intron 55.0%
! AACGGTTGGCCCCAACTACA+AGG - chr1_4:61994680-61994699 None:intergenic 55.0%
AACACGCGGCTAGAGAGAGA+AGG - chr1_4:61995696-61995715 None:intergenic 55.0%
TCTCTCTAGCCGCGTGTTGA+AGG + chr1_4:61995698-61995717 Msa0175850:intron 55.0%
CCGCGTGTTGAAGGAAGTCA+AGG + chr1_4:61995707-61995726 Msa0175850:intron 55.0%
GGAGAAAAGGAGGTGAGCTG+TGG - chr1_4:61995753-61995772 None:intergenic 55.0%
TAGGGAAACCCCAAACCCCT+AGG + chr1_4:61996039-61996058 Msa0175850:intron 55.0%
TCCCAGACACAACTCCCATG+CGG - chr1_4:61996502-61996521 None:intergenic 55.0%
! GGGTTATCGGTTGGGGGTAA+TGG - chr1_4:61997353-61997372 None:intergenic 55.0%
!! GGCTTTGGGTTATCGGTTGG+GGG - chr1_4:61997359-61997378 None:intergenic 55.0%
TGACAGCAGCAGCAGTTGTC+GGG - chr1_4:61997511-61997530 None:intergenic 55.0%
GTGACAGCAGCAGCAGTTGT+CGG - chr1_4:61997512-61997531 None:intergenic 55.0%
!! TCAGCCGGCAGATTTTGACC+TGG + chr1_4:61997631-61997650 Msa0175850:CDS 55.0%
!! GGTGGTGGCGGTGGTAAAGA+TGG - chr1_4:61992278-61992297 None:intergenic 60.0%
!! GGAAAAAGGGGTGGTGGTGG+CGG - chr1_4:61992290-61992309 None:intergenic 60.0%
!! GGGTTGGTTGTGGTGGCAGA+TGG - chr1_4:61992357-61992376 None:intergenic 60.0%
!! TGGGGAAGGGTTGGTTGTGG+TGG - chr1_4:61992364-61992383 None:intergenic 60.0%
!! GAGTGGGGAAGGGTTGGTTG+TGG - chr1_4:61992367-61992386 None:intergenic 60.0%
GCCGCAGAAGCAGAAGCAGA+AGG - chr1_4:61992408-61992427 None:intergenic 60.0%
CCAGGAGCAAGGGAAGTTGG+TGG - chr1_4:61992432-61992451 None:intergenic 60.0%
CCACCAACTTCCCTTGCTCC+TGG + chr1_4:61992429-61992448 Msa0175850:CDS 60.0%
! GGGCCACTCTTCAAGGGTAC+TGG + chr1_4:61992955-61992974 Msa0175850:CDS 60.0%
GAATTGGAGAGGGAGAGGGC+TGG + chr1_4:61993119-61993138 Msa0175850:CDS 60.0%
ATTGGAGAGGGAGAGGGCTG+GGG + chr1_4:61993121-61993140 Msa0175850:CDS 60.0%
TTACTCACAGGCTCAGCCCC+AGG - chr1_4:61993554-61993573 None:intergenic 60.0%
GGGGCTGAGCCTGTGAGTAA+TGG + chr1_4:61993554-61993573 Msa0175850:CDS 60.0%
! AGACGCAGATGGCGGTCAAC+AGG - chr1_4:61993596-61993615 None:intergenic 60.0%
GGACAAGGGTTCCAGCGTTC+CGG - chr1_4:61994149-61994168 None:intergenic 60.0%
GGACAAGGGTTCCAGCGTTC+CGG - chr1_4:61994149-61994168 None:intergenic 60.0%
! GGCTCGGAGCACCTTGTAGT+TGG + chr1_4:61994666-61994685 Msa0175850:intron 60.0%
GTTGGGGCCAACCGTTTCAC+AGG + chr1_4:61994684-61994703 Msa0175850:intron 60.0%
ACCCGCATGGGAGTTGTGTC+TGG + chr1_4:61996497-61996516 Msa0175850:intron 60.0%
CCCAGACACAACTCCCATGC+GGG - chr1_4:61996501-61996520 None:intergenic 60.0%
CCCGCATGGGAGTTGTGTCT+GGG + chr1_4:61996498-61996517 Msa0175850:intron 60.0%
!! AAAAGGGGTGGTGGTGGCGG+TGG - chr1_4:61992287-61992306 None:intergenic 65.0%
GTTGTGGTGGCAGATGGGGG+TGG - chr1_4:61992351-61992370 None:intergenic 65.0%
CATAGCGGCCGTGCTCCTGA+CGG + chr1_4:61993050-61993069 Msa0175850:CDS 65.0%
CGGGAGAGTTGTCGCTGCAG+TGG - chr1_4:61997492-61997511 None:intergenic 65.0%
! CTGCCGGCTGAACTGAGGTG+TGG - chr1_4:61997622-61997641 None:intergenic 65.0%
GTGGTGGCAGATGGGGGTGG+AGG - chr1_4:61992348-61992367 None:intergenic 70.0%
GGCTGGACCCTCTCAGCCAC+AGG + chr1_4:61993142-61993161 Msa0175850:CDS 70.0%
GAGAGGGAGAGGGCTGGGGC+TGG + chr1_4:61993125-61993144 Msa0175850:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61992155 61998063 61992155 ID=Msa0175850;Name=Msa0175850
chr1_4 mRNA 61992155 61998063 61992155 ID=Msa0175850-mRNA-1;Parent=Msa0175850;Name=Msa0175850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=163|1|1|1|1|1|4|207|482
chr1_4 exon 61992155 61992582 61992155 ID=Msa0175850-mRNA-1:exon:19876;Parent=Msa0175850-mRNA-1
chr1_4 exon 61992868 61993163 61992868 ID=Msa0175850-mRNA-1:exon:19877;Parent=Msa0175850-mRNA-1
chr1_4 exon 61993440 61993667 61993440 ID=Msa0175850-mRNA-1:exon:19878;Parent=Msa0175850-mRNA-1
chr1_4 exon 61997197 61998063 61997197 ID=Msa0175850-mRNA-1:exon:19879;Parent=Msa0175850-mRNA-1
chr1_4 five_prime_UTR 61992155 61992317 61992155 ID=Msa0175850-mRNA-1:five_prime_utr;Parent=Msa0175850-mRNA-1
chr1_4 CDS 61992318 61992582 61992318 ID=Msa0175850-mRNA-1:cds;Parent=Msa0175850-mRNA-1
chr1_4 CDS 61992868 61993163 61992868 ID=Msa0175850-mRNA-1:cds;Parent=Msa0175850-mRNA-1
chr1_4 CDS 61993440 61993667 61993440 ID=Msa0175850-mRNA-1:cds;Parent=Msa0175850-mRNA-1
chr1_4 CDS 61997197 61997856 61997197 ID=Msa0175850-mRNA-1:cds;Parent=Msa0175850-mRNA-1
chr1_4 three_prime_UTR 61997857 61998063 61997857 ID=Msa0175850-mRNA-1:three_prime_utr;Parent=Msa0175850-mRNA-1
Gene Sequence

>Msa0175850

ATGGGTCACGAAGAACCTCTTTTACTTCCTCCACCCCCATCTGCCACCACAACCAACCCTTCCCCACTCACAGTTTCAGTACCATCGCCTTCTGCTTCTGCTTCTGCGGCCCCACCAACTTCCCTTGCTCCTGGTTTTAGGTTTCACCCCACTGATGAAGAACTTGTCATTTATTACCTGAAACGCAAGGTTTCTGGAAAACCCTTCAGATTTGATGCTATTGCTGAAGTTGATATCTACAAGAGTGAACCATGGGATCTTTTTGATAAGTCAAGGCTGAAGACCAGAGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGGGGCAGGATGAACAGGGCCACTCTTCAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCAGTGAAGCATGACCTAAGGACCGTGGGGTTGAAGAAGACTCTGGTGTTTCATAGCGGCCGTGCTCCTGACGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGACTTGTTGAGGAAGAATTGGAGAGGGAGAGGGCTGGGGCTGGACCCTCTCAGCCACAGGAGGCATTTGTGCTGTGTAGAGTGTTTCACAAGAATAACATTGGGCCTCCAAATGGACAACGGTATGCACCTTTTGTTGAAGAAGAGTGGGAAGAAGGATCAGGAATGGTTCCTGGGGCTGAGCCTGTGAGTAATGGTCCTGTGAGTAATGGTCCTGTTGACCGCCATCTGCGTCTTGAATGGAACGGTGGAGTTTCATGCAATGAAGGAAGAAATCATGTTGTGCAGGACACTCAATCCAACAACAAAACTCCACTTGATGTGAACAAGCTGCCGATCGAAACTCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCTGAAAAGGATGAATCTAAGCATATGCATGTTGATGATGAGTACCCATTACCCCCAACCGATAACCCAAAGCCAATACCTCAAATTTACAAAAGGCGGCGCTATAACTTGAACTCCAATCATTCTAATGTTTCTGGAGATTCATTCCACCCTAACAGTCAGGATCCATGCTCGTCCACAATAACCACTGCAGCGACAACTCTCCCGACAACTGCTGCTGCTGTCACAACTGCCAAACCTGCTCCGAAGAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCACTTGAATCGAAGAAGGAAAACCACACCTCAGTTCAGCCGGCAGATTTTGACCTGGCGAATCTTGAATCGTGTGTGCCTCCGAGTGTTGCAAAGTACATCAAATACTTGCAGAGTGAGACACAGAAGCTTGGTGTTGAGAAGGAGACAATGCGTTTCGAGTTGACAAGTGCTCAAACCATGATTAACATTCTCCAGTCCCGTGTTGAAAATCTCAGCAAAGAGAACGAGGAGATGAAGATGATGATGAGAAATCCTTAG
Protein sequence

>Msa0175850

MGHEEPLLLPPPPSATTTNPSPLTVSVPSPSASASAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLFDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERERAGAGPSQPQEAFVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGSGMVPGAEPVSNGPVSNGPVDRHLRLEWNGGVSCNEGRNHVVQDTQSNNKTPLDVNKLPIETQNLLAVCKRESMTEFSSPEKDESKHMHVDDEYPLPPTDNPKPIPQIYKRRRYNLNSNHSNVSGDSFHPNSQDPCSSTITTAATTLPTTAAAVTTAKPAPKKHFLSALVEFSLLESLESKKENHTSVQPADFDLANLESCVPPSVAKYIKYLQSETQKLGVEKETMRFELTSAQTMINILQSRVENLSKENEEMKMMMRNP*