Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035750 | sp|Q9SRH9|SNL1_ARATH | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.94e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0035750 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035750 | Msa1396120 | 0.975448 | 5.698637e-140 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035750 | MtrunA17_Chr3g0093911 | 60.309 | 194 | 46 | 3 | 138 | 304 | 161 | 350 | 1.85e-68 | 216 |
| Msa0035750 | MtrunA17_Chr3g0093911 | 76.667 | 60 | 14 | 0 | 77 | 136 | 1 | 60 | 8.48e-24 | 99.4 |
| Msa0035750 | MtrunA17_Chr1g0207351 | 59.887 | 177 | 47 | 3 | 146 | 304 | 196 | 366 | 6.35e-62 | 200 |
| Msa0035750 | MtrunA17_Chr1g0207351 | 70.000 | 60 | 14 | 1 | 81 | 136 | 16 | 75 | 7.98e-17 | 80.1 |
| Msa0035750 | MtrunA17_Chr1g0202841 | 56.983 | 179 | 59 | 2 | 142 | 304 | 3 | 179 | 3.57e-61 | 192 |
| Msa0035750 | MtrunA17_Chr7g0252101 | 58.564 | 181 | 55 | 3 | 140 | 304 | 256 | 432 | 1.30e-58 | 194 |
| Msa0035750 | MtrunA17_Chr7g0252101 | 60.156 | 128 | 46 | 4 | 12 | 135 | 16 | 142 | 4.92e-39 | 142 |
| Msa0035750 | MtrunA17_Chr1g0209051 | 56.983 | 179 | 57 | 2 | 141 | 303 | 96 | 270 | 1.92e-58 | 188 |
| Msa0035750 | MtrunA17_Chr4g0075971 | 44.700 | 217 | 88 | 5 | 104 | 303 | 400 | 601 | 5.63e-45 | 160 |
| Msa0035750 | MtrunA17_Chr4g0075971 | 55.396 | 139 | 45 | 3 | 10 | 133 | 173 | 309 | 1.52e-36 | 137 |
| Msa0035750 | MtrunA17_Chr3g0077801 | 50.581 | 172 | 65 | 4 | 146 | 301 | 182 | 349 | 1.00e-41 | 147 |
| Msa0035750 | MtrunA17_Chr3g0077801 | 56.061 | 66 | 29 | 0 | 77 | 142 | 1 | 66 | 4.14e-18 | 83.6 |
| Msa0035750 | MtrunA17_Chr7g0243331 | 48.023 | 177 | 67 | 4 | 146 | 304 | 181 | 350 | 3.26e-41 | 146 |
| Msa0035750 | MtrunA17_Chr7g0243331 | 55.738 | 61 | 27 | 0 | 82 | 142 | 6 | 66 | 4.19e-16 | 77.8 |
| Msa0035750 | MtrunA17_Chr6g0488101 | 42.273 | 220 | 87 | 7 | 110 | 304 | 251 | 455 | 3.46e-39 | 143 |
| Msa0035750 | MtrunA17_Chr6g0488101 | 45.205 | 146 | 57 | 3 | 11 | 133 | 10 | 155 | 4.16e-31 | 121 |
| Msa0035750 | MtrunA17_Chr6g0488271 | 41.818 | 220 | 88 | 7 | 110 | 304 | 211 | 415 | 1.98e-38 | 140 |
| Msa0035750 | MtrunA17_Chr6g0488271 | 49.074 | 108 | 38 | 1 | 43 | 133 | 8 | 115 | 1.38e-27 | 110 |
| Msa0035750 | MtrunA17_Chr3g0112311 | 46.154 | 182 | 72 | 5 | 144 | 302 | 177 | 355 | 2.79e-37 | 135 |
| Msa0035750 | MtrunA17_Chr3g0112311 | 61.404 | 57 | 22 | 0 | 77 | 133 | 1 | 57 | 3.20e-17 | 80.9 |
| Msa0035750 | MtrunA17_Chr4g0075861 | 55.396 | 139 | 45 | 3 | 10 | 133 | 173 | 309 | 3.24e-37 | 136 |
| Msa0035750 | MtrunA17_Chr3g0077851 | 37.903 | 248 | 109 | 7 | 85 | 303 | 104 | 335 | 1.20e-35 | 131 |
| Msa0035750 | MtrunA17_Chr3g0077851 | 71.739 | 46 | 13 | 0 | 96 | 141 | 4 | 49 | 7.76e-17 | 79.7 |
| Msa0035750 | MtrunA17_Chr3g0077901 | 35.887 | 248 | 114 | 7 | 85 | 303 | 140 | 371 | 3.50e-34 | 128 |
| Msa0035750 | MtrunA17_Chr3g0077901 | 36.000 | 150 | 85 | 3 | 73 | 215 | 17 | 162 | 8.57e-20 | 88.6 |
| Msa0035750 | MtrunA17_Chr6g0452641 | 42.935 | 184 | 76 | 4 | 146 | 304 | 161 | 340 | 1.48e-33 | 125 |
| Msa0035750 | MtrunA17_Chr3g0123471 | 42.935 | 184 | 75 | 6 | 138 | 296 | 81 | 259 | 6.79e-33 | 122 |
| Msa0035750 | MtrunA17_Chr1g0209191 | 56.436 | 101 | 38 | 2 | 206 | 303 | 1 | 98 | 1.15e-31 | 114 |
| Msa0035750 | MtrunA17_Chr1g0187941 | 48.529 | 136 | 54 | 1 | 141 | 260 | 2 | 137 | 1.75e-30 | 112 |
| Msa0035750 | MtrunA17_Chr1g0196241 | 70.886 | 79 | 19 | 2 | 198 | 275 | 4 | 79 | 1.26e-29 | 108 |
| Msa0035750 | MtrunA17_Chr6g0486591 | 40.994 | 161 | 66 | 5 | 167 | 302 | 1 | 157 | 8.83e-27 | 102 |
| Msa0035750 | MtrunA17_Chr1g0209061 | 50.926 | 108 | 43 | 1 | 9 | 116 | 10 | 107 | 3.23e-25 | 97.4 |
| Msa0035750 | MtrunA17_Chr1g0206951 | 65.672 | 67 | 23 | 0 | 80 | 146 | 2 | 68 | 6.17e-23 | 92.0 |
| Msa0035750 | MtrunA17_Chr1g0196231 | 64.000 | 75 | 20 | 2 | 62 | 136 | 216 | 283 | 9.25e-22 | 94.0 |
| Msa0035750 | MtrunA17_Chr8g0364231 | 44.068 | 118 | 59 | 3 | 8 | 125 | 41 | 151 | 9.05e-20 | 89.7 |
| Msa0035750 | MtrunA17_Chr3g0122991 | 42.308 | 130 | 46 | 3 | 163 | 266 | 148 | 274 | 6.26e-19 | 84.7 |
| Msa0035750 | MtrunA17_Chr3g0122991 | 62.069 | 58 | 21 | 1 | 79 | 136 | 2 | 58 | 9.25e-18 | 81.6 |
| Msa0035750 | MtrunA17_Chr5g0415031 | 44.231 | 104 | 51 | 3 | 8 | 111 | 42 | 138 | 6.58e-18 | 84.3 |
| Msa0035750 | MtrunA17_Chr7g0243391 | 49.315 | 73 | 37 | 0 | 69 | 141 | 10 | 82 | 2.42e-17 | 79.7 |
| Msa0035750 | MtrunA17_Chr6g0452001 | 38.983 | 118 | 65 | 2 | 8 | 125 | 62 | 172 | 1.89e-16 | 80.1 |
| Msa0035750 | MtrunA17_Chr1g0209201 | 55.714 | 70 | 29 | 2 | 9 | 78 | 16 | 83 | 7.75e-16 | 73.2 |
| Msa0035750 | MtrunA17_Chr3g0077861 | 63.077 | 65 | 22 | 2 | 9 | 72 | 90 | 153 | 6.64e-15 | 71.2 |
| Msa0035750 | MtrunA17_Chr6g0452021 | 38.462 | 117 | 63 | 3 | 9 | 125 | 43 | 150 | 9.74e-15 | 74.3 |
| Msa0035750 | MtrunA17_Chr3g0077911 | 63.077 | 65 | 22 | 2 | 9 | 72 | 90 | 153 | 1.05e-14 | 70.5 |
| Msa0035750 | MtrunA17_Chr1g0206781 | 52.239 | 67 | 31 | 1 | 11 | 77 | 13 | 78 | 1.53e-14 | 68.9 |
| Msa0035750 | MtrunA17_Chr1g0206771 | 43.373 | 83 | 39 | 2 | 11 | 93 | 18 | 92 | 1.49e-13 | 67.8 |
| Msa0035750 | MtrunA17_Chr1g0206771 | 46.377 | 69 | 36 | 1 | 4 | 72 | 90 | 157 | 5.60e-12 | 63.5 |
| Msa0035750 | MtrunA17_Chr1g0205811 | 38.596 | 114 | 56 | 4 | 3 | 110 | 7 | 112 | 1.95e-13 | 65.9 |
| Msa0035750 | MtrunA17_Chr1g0205861 | 41.379 | 87 | 45 | 2 | 11 | 92 | 18 | 103 | 1.37e-11 | 60.8 |
| Msa0035750 | MtrunA17_Chr3g0077811 | 48.101 | 79 | 38 | 3 | 1 | 78 | 6 | 82 | 2.50e-11 | 60.1 |
| Msa0035750 | MtrunA17_Chr7g0218911 | 48.387 | 62 | 31 | 1 | 13 | 74 | 2 | 62 | 3.47e-11 | 59.7 |
| Msa0035750 | MtrunA17_Chr6g0459061 | 30.216 | 139 | 70 | 5 | 146 | 264 | 187 | 318 | 4.38e-11 | 63.2 |
| Msa0035750 | MtrunA17_Chr1g0156171 | 64.103 | 39 | 14 | 0 | 39 | 77 | 16 | 54 | 7.34e-11 | 58.9 |
| Msa0035750 | MtrunA17_Chr1g0205821 | 47.222 | 72 | 37 | 1 | 6 | 77 | 96 | 166 | 7.70e-11 | 60.1 |
| Msa0035750 | MtrunA17_Chr8g0364021 | 43.038 | 79 | 44 | 1 | 8 | 86 | 43 | 120 | 9.59e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035750 | AT3G01320.2 | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.98e-18 | 85.9 |
| Msa0035750 | AT3G01320.1 | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.99e-18 | 85.9 |
| Msa0035750 | AT1G24190.3 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.32e-17 | 84.0 |
| Msa0035750 | AT1G24190.1 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.46e-17 | 83.6 |
| Msa0035750 | AT1G24190.2 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.54e-17 | 83.6 |
| Msa0035750 | AT5G15020.2 | 39.496 | 119 | 61 | 3 | 8 | 125 | 51 | 159 | 2.75e-17 | 82.8 |
| Msa0035750 | AT5G15020.1 | 39.496 | 119 | 61 | 3 | 8 | 125 | 51 | 159 | 2.75e-17 | 82.8 |
| Msa0035750 | AT1G59890.4 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.02e-16 | 79.0 |
| Msa0035750 | AT1G59890.1 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.13e-16 | 79.0 |
| Msa0035750 | AT1G59890.3 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.32e-16 | 79.0 |
| Msa0035750 | AT1G59890.2 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.43e-16 | 79.0 |
| Msa0035750 | AT1G10450.2 | 57.971 | 69 | 28 | 1 | 9 | 77 | 33 | 100 | 1.25e-15 | 77.8 |
| Msa0035750 | AT1G10450.1 | 57.971 | 69 | 28 | 1 | 9 | 77 | 33 | 100 | 1.25e-15 | 77.8 |
| Msa0035750 | AT1G10450.3 | 57.971 | 69 | 28 | 1 | 9 | 77 | 84 | 151 | 1.49e-15 | 77.8 |
| Msa0035750 | AT1G70060.2 | 55.224 | 67 | 29 | 1 | 8 | 74 | 13 | 78 | 2.40e-15 | 77.0 |
| Msa0035750 | AT1G70060.1 | 55.224 | 67 | 29 | 1 | 8 | 74 | 13 | 78 | 2.40e-15 | 77.0 |
| Msa0035750 | AT1G70030.3 | 50.000 | 66 | 32 | 1 | 9 | 74 | 22 | 86 | 3.09e-12 | 63.2 |
| Msa0035750 | AT5G15025.1 | 44.872 | 78 | 42 | 1 | 8 | 85 | 46 | 122 | 5.63e-12 | 62.4 |
| Msa0035750 | AT1G70030.2 | 50.000 | 66 | 32 | 1 | 9 | 74 | 22 | 86 | 8.41e-12 | 62.4 |
| Msa0035750 | AT1G70030.1 | 50.000 | 66 | 32 | 1 | 9 | 74 | 11 | 75 | 1.03e-11 | 62.8 |
| Msa0035750 | AT4G12020.6 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa0035750 | AT4G12020.8 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa0035750 | AT4G12020.1 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa0035750 | AT4G12020.9 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa0035750 | AT4G12020.2 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.13e-11 | 64.7 |
| Msa0035750 | AT4G12020.7 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.14e-11 | 64.7 |
| Msa0035750 | AT4G12020.4 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.28e-11 | 64.7 |
| Msa0035750 | AT4G12020.11 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.42e-11 | 64.7 |
| Msa0035750 | AT4G12020.3 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.46e-11 | 64.7 |
| Msa0035750 | AT4G12020.5 | 45.679 | 81 | 41 | 3 | 9 | 89 | 241 | 318 | 3.51e-11 | 64.7 |
| Msa0035750 | AT4G12020.10 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.55e-11 | 64.7 |
Find 58 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACATAAAGATTTAATTT+TGG | 0.171702 | 1_1:+64093617 | Msa0035750:CDS |
| CTCCAGCCCTCAAATATTTC+AGG | 0.192555 | 1_1:-64093545 | None:intergenic |
| CTCTCATATCCCCACTTGTT+CGG | 0.274296 | 1_1:-64095907 | None:intergenic |
| TTCTAGTCTGAAATAATTCA+TGG | 0.326313 | 1_1:-64095815 | None:intergenic |
| TGTTGTGATAAAAGGGAAAA+AGG | 0.329108 | 1_1:+64094898 | Msa0035750:intron |
| GAACTTCCTTTGGATGTGTT+TGG | 0.331499 | 1_1:+64094944 | Msa0035750:CDS |
| TCTCATATCCCCACTTGTTC+GGG | 0.349130 | 1_1:-64095906 | None:intergenic |
| AGAGTGAAGAGACTGTTTAA+AGG | 0.353217 | 1_1:+64093597 | Msa0035750:CDS |
| CTCATCCTACAATTGTTGTT+TGG | 0.366474 | 1_1:+64096034 | Msa0035750:CDS |
| CTAGTTTATCATCGCCGATT+TGG | 0.368172 | 1_1:-64093455 | None:intergenic |
| TCGCAAGAAGTAATGGTTCT+TGG | 0.379526 | 1_1:-64095072 | None:intergenic |
| TTTCCGGCGTGTGCAAGAAT+TGG | 0.380354 | 1_1:+64095008 | Msa0035750:CDS |
| AGAGAACTATGAACTTCCTT+TGG | 0.396409 | 1_1:+64094934 | Msa0035750:CDS |
| ACACGCCGGAAAACTGAAAT+AGG | 0.402270 | 1_1:-64094997 | None:intergenic |
| TAAAACTCCTGAAATATTTG+AGG | 0.412179 | 1_1:+64093538 | Msa0035750:CDS |
| ATCACTAACAAGGCCAAGAT+AGG | 0.412555 | 1_1:+64095631 | Msa0035750:CDS |
| CGCAAGAAGTAATGGTTCTT+GGG | 0.414011 | 1_1:-64095071 | None:intergenic |
| AATTCCTATGTTCCTTAAGT+TGG | 0.417551 | 1_1:+64095717 | Msa0035750:CDS |
| AAAACTCCTGAAATATTTGA+GGG | 0.421671 | 1_1:+64093539 | Msa0035750:CDS |
| TATTTCAGACTAGAAACTTT+GGG | 0.422875 | 1_1:+64095823 | Msa0035750:CDS |
| GGATGAGATTCAAGAGGAGC+TGG | 0.423352 | 1_1:-64096018 | None:intergenic |
| TTCAACACCTTCCTTCCAAC+TGG | 0.425335 | 1_1:+64093642 | Msa0035750:CDS |
| CAAGCTCAGTACCCCTATCT+TGG | 0.426294 | 1_1:-64095644 | None:intergenic |
| CAAATCGGCGATGATAAACT+AGG | 0.426757 | 1_1:+64093456 | Msa0035750:CDS |
| CATCACAAATAACCAACTTA+AGG | 0.429922 | 1_1:-64095729 | None:intergenic |
| TTATTTCAGACTAGAAACTT+TGG | 0.431425 | 1_1:+64095822 | Msa0035750:CDS |
| CCGGCGTGTGCAAGAATTGG+AGG | 0.450628 | 1_1:+64095011 | Msa0035750:CDS |
| AACATAGGAATTGCTATAGC+TGG | 0.451808 | 1_1:-64095706 | None:intergenic |
| CATTATGCAACGTTTATTCA+AGG | 0.452872 | 1_1:+64095962 | Msa0035750:CDS |
| ATATTAAATTTCTTAAATTG+AGG | 0.460318 | 1_1:+64095677 | Msa0035750:CDS |
| CTCCTGAAATATTTGAGGGC+TGG | 0.470760 | 1_1:+64093543 | Msa0035750:CDS |
| ACCTTCCAAACAACAATTGT+AGG | 0.478332 | 1_1:-64096039 | None:intergenic |
| TCCTACAATTGTTGTTTGGA+AGG | 0.481880 | 1_1:+64096038 | Msa0035750:CDS |
| GAATAATAACTCTTAGCATA+AGG | 0.482018 | 1_1:-64095100 | None:intergenic |
| AGAGTGGGTTGTTGACTTTG+TGG | 0.494217 | 1_1:+64095585 | Msa0035750:CDS |
| AAGATGAAGAACTTCCAAAT+CGG | 0.523463 | 1_1:+64093441 | None:intergenic |
| TCACTAACAAGGCCAAGATA+GGG | 0.533592 | 1_1:+64095632 | Msa0035750:CDS |
| ATAACCAACTTAAGGAACAT+AGG | 0.538258 | 1_1:-64095721 | None:intergenic |
| ATTATGCAACGTTTATTCAA+GGG | 0.539023 | 1_1:+64095963 | Msa0035750:CDS |
| GGCGATATCGCAAGAAGTAA+TGG | 0.543124 | 1_1:-64095079 | None:intergenic |
| TAACTAACCAGTTGGAAGGA+AGG | 0.563424 | 1_1:-64093649 | None:intergenic |
| AACAATAGAAAATAGAGAGT+GGG | 0.566020 | 1_1:+64095570 | Msa0035750:intron |
| CGTTGAGCAACCCGAACAAG+TGG | 0.576312 | 1_1:+64095896 | Msa0035750:CDS |
| CTGAAATATTTGAGGGCTGG+AGG | 0.578589 | 1_1:+64093546 | Msa0035750:CDS |
| CAACAATAGAAAATAGAGAG+TGG | 0.582774 | 1_1:+64095569 | Msa0035750:intron |
| TTGTTGTTTGGAAGGTCGAT+TGG | 0.583682 | 1_1:+64096046 | Msa0035750:CDS |
| GATGAGATTCAAGAGGAGCT+GGG | 0.594444 | 1_1:-64096017 | None:intergenic |
| AAATCGGCGATGATAAACTA+GGG | 0.599368 | 1_1:+64093457 | Msa0035750:CDS |
| GTGATACCAAACACATCCAA+AGG | 0.609611 | 1_1:-64094950 | None:intergenic |
| CACTAACAAGGCCAAGATAG+GGG | 0.611011 | 1_1:+64095633 | Msa0035750:CDS |
| GTAGTAACTAACCAGTTGGA+AGG | 0.611566 | 1_1:-64093653 | None:intergenic |
| TGATAAACTAGGGTTTCTCA+AGG | 0.637359 | 1_1:+64093467 | Msa0035750:CDS |
| CCTCCAATTCTTGCACACGC+CGG | 0.653779 | 1_1:-64095011 | None:intergenic |
| GGAGGAAGAATTGATACAAG+AGG | 0.656290 | 1_1:+64093564 | Msa0035750:CDS |
| TTGAGCAACCCGAACAAGTG+GGG | 0.657706 | 1_1:+64095898 | Msa0035750:CDS |
| GTTGAGCAACCCGAACAAGT+GGG | 0.660821 | 1_1:+64095897 | Msa0035750:CDS |
| AATATATGTCATCACTAACA+AGG | 0.661183 | 1_1:+64095621 | Msa0035750:CDS |
| ATTGTAGGATGAGATTCAAG+AGG | 0.663965 | 1_1:-64096024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACAAGATAATTTTTT+AGG | + | chr1_1:64093766-64093785 | Msa0035750:intron | 10.0% |
| !! | ATAAATAAAATCAAAACATA+TGG | + | chr1_1:64094851-64094870 | Msa0035750:intron | 10.0% |
| !! | ATATTAAATTTCTTAAATTG+AGG | + | chr1_1:64095677-64095696 | Msa0035750:CDS | 10.0% |
| !! | TAAAAATATATATGTCTCAT+TGG | + | chr1_1:64094085-64094104 | Msa0035750:intron | 15.0% |
| !!! | ACTTGATTAATTTTTGTTTT+AGG | + | chr1_1:64094201-64094220 | Msa0035750:intron | 15.0% |
| !!! | CTTGATTAATTTTTGTTTTA+GGG | + | chr1_1:64094202-64094221 | Msa0035750:intron | 15.0% |
| !!! | TTGATTAATTTTTGTTTTAG+GGG | + | chr1_1:64094203-64094222 | Msa0035750:intron | 15.0% |
| !!! | TTTTAGTATATGCTATAATT+TGG | - | chr1_1:64094504-64094523 | None:intergenic | 15.0% |
| !!! | AGGACATAAAGATTTAATTT+TGG | + | chr1_1:64093617-64093636 | Msa0035750:CDS | 20.0% |
| !!! | GGACATAAAGATTTAATTTT+GGG | + | chr1_1:64093618-64093637 | Msa0035750:CDS | 20.0% |
| !! | TTATGTCTATTATTTATGTG+TGG | + | chr1_1:64093833-64093852 | Msa0035750:intron | 20.0% |
| !! | TTCATAACTTTCTTATGAAA+TGG | + | chr1_1:64094049-64094068 | Msa0035750:intron | 20.0% |
| !! | TCATTGGATAATTATATCAT+TGG | + | chr1_1:64094101-64094120 | Msa0035750:intron | 20.0% |
| !! | TCATTGGATATAATATATCA+TGG | + | chr1_1:64094117-64094136 | Msa0035750:intron | 20.0% |
| !! | AACTATATGATTGTTTATGA+TGG | + | chr1_1:64094268-64094287 | Msa0035750:intron | 20.0% |
| !!! | TTTTCATAAGTTTTCCAATA+TGG | + | chr1_1:64094469-64094488 | Msa0035750:intron | 20.0% |
| !!! | TTTGGTTTTATATACCATAT+TGG | - | chr1_1:64094486-64094505 | None:intergenic | 20.0% |
| !!! | TTGTGTATTTGATAATATCA+TGG | - | chr1_1:64094809-64094828 | None:intergenic | 20.0% |
| !!! | ATTTTACTGGAGAAATTTTT+TGG | + | chr1_1:64095045-64095064 | Msa0035750:CDS | 20.0% |
| !!! | AAGTGATAAACTTTTTAGTT+GGG | - | chr1_1:64095139-64095158 | None:intergenic | 20.0% |
| ! | TAAAACTCCTGAAATATTTG+AGG | + | chr1_1:64093538-64093557 | Msa0035750:CDS | 25.0% |
| ! | AAAACTCCTGAAATATTTGA+GGG | + | chr1_1:64093539-64093558 | Msa0035750:CDS | 25.0% |
| ! | AAGATGCAGATAAAGATATA+TGG | - | chr1_1:64093748-64093767 | None:intergenic | 25.0% |
| ! | TAACATGATGAACAATTACA+TGG | - | chr1_1:64093868-64093887 | None:intergenic | 25.0% |
| ! | AGAAAATAGAAATACCTTCA+AGG | - | chr1_1:64093919-64093938 | None:intergenic | 25.0% |
| ! | AAAATGCAATATGCATTTGA+TGG | + | chr1_1:64093968-64093987 | Msa0035750:intron | 25.0% |
| ! | AAATGCAATATGCATTTGAT+GGG | + | chr1_1:64093969-64093988 | Msa0035750:intron | 25.0% |
| ! | TAGAAGTTGAATTGTACTTT+AGG | + | chr1_1:64094333-64094352 | Msa0035750:intron | 25.0% |
| ! | AATAACATGAATAACCTACA+AGG | - | chr1_1:64094743-64094762 | None:intergenic | 25.0% |
| ! | TGATAATATCATGGAAAATG+AGG | - | chr1_1:64094800-64094819 | None:intergenic | 25.0% |
| !! | GGACTTTTCATAAATTTTAC+TGG | + | chr1_1:64095032-64095051 | Msa0035750:CDS | 25.0% |
| ! | GAATAATAACTCTTAGCATA+AGG | - | chr1_1:64095103-64095122 | None:intergenic | 25.0% |
| !!! | CAAGTGATAAACTTTTTAGT+TGG | - | chr1_1:64095140-64095159 | None:intergenic | 25.0% |
| ! | CAACTAAAAAGTTTATCACT+TGG | + | chr1_1:64095138-64095157 | Msa0035750:intron | 25.0% |
| ! | AATATGTAACATAGTTAGAG+CGG | - | chr1_1:64095183-64095202 | None:intergenic | 25.0% |
| ! | AACTATGTTACATATTCTAG+CGG | + | chr1_1:64095187-64095206 | Msa0035750:intron | 25.0% |
| ! | GATTTCGTTATTCTTGTAAA+TGG | - | chr1_1:64095259-64095278 | None:intergenic | 25.0% |
| ! | AACAATAGAAAATAGAGAGT+GGG | + | chr1_1:64095570-64095589 | Msa0035750:intron | 25.0% |
| ! | AATATATGTCATCACTAACA+AGG | + | chr1_1:64095621-64095640 | Msa0035750:CDS | 25.0% |
| !! | AGTACTTTATTTATTGTCCA+AGG | + | chr1_1:64095762-64095781 | Msa0035750:intron | 25.0% |
| !! | TTCTAGTCTGAAATAATTCA+TGG | - | chr1_1:64095818-64095837 | None:intergenic | 25.0% |
| ! | TTATTTCAGACTAGAAACTT+TGG | + | chr1_1:64095822-64095841 | Msa0035750:CDS | 25.0% |
| ! | TATTTCAGACTAGAAACTTT+GGG | + | chr1_1:64095823-64095842 | Msa0035750:CDS | 25.0% |
| !! | GCATTATTTTCTATTTCGAT+TGG | + | chr1_1:64095853-64095872 | Msa0035750:CDS | 25.0% |
| ! | ATTATGCAACGTTTATTCAA+GGG | + | chr1_1:64095963-64095982 | Msa0035750:CDS | 25.0% |
| AAAAGTAGTAACTAACCAGT+TGG | - | chr1_1:64093660-64093679 | None:intergenic | 30.0% | |
| CTTATTCTACTAAGTGTGAT+CGG | - | chr1_1:64094181-64094200 | None:intergenic | 30.0% | |
| ! | TTATGATGGAAAAGTACACA+AGG | + | chr1_1:64094282-64094301 | Msa0035750:intron | 30.0% |
| TGAAATAAGTCAATCCAAAC+AGG | - | chr1_1:64094360-64094379 | None:intergenic | 30.0% | |
| AATAACCTACAAGGTGATAA+GGG | - | chr1_1:64094734-64094753 | None:intergenic | 30.0% | |
| ! | ACTATCCTTGTTGTGATAAA+AGG | + | chr1_1:64094890-64094909 | Msa0035750:intron | 30.0% |
| ! | CTATCCTTGTTGTGATAAAA+GGG | + | chr1_1:64094891-64094910 | Msa0035750:intron | 30.0% |
| ! | TTTTCCCTTTTATCACAACA+AGG | - | chr1_1:64094898-64094917 | None:intergenic | 30.0% |
| TGTTGTGATAAAAGGGAAAA+AGG | + | chr1_1:64094898-64094917 | Msa0035750:intron | 30.0% | |
| TTAGTTGGGTATGCTAATAA+AGG | - | chr1_1:64095125-64095144 | None:intergenic | 30.0% | |
| !! | TTCTAGCGGATATTTTATAC+TGG | + | chr1_1:64095201-64095220 | Msa0035750:intron | 30.0% |
| ! | GGATATTTTATACTGGCAAA+GGG | + | chr1_1:64095208-64095227 | Msa0035750:intron | 30.0% |
| !!! | TTTTTTTACCTTCAGAGGTA+GGG | - | chr1_1:64095288-64095307 | None:intergenic | 30.0% |
| ! | TACCTCTGAAGGTAAAAAAA+GGG | + | chr1_1:64095288-64095307 | Msa0035750:intron | 30.0% |
| TTAAAGAAGAGTTACCTTCA+CGG | - | chr1_1:64095432-64095451 | None:intergenic | 30.0% | |
| !! | TTGCTTTTATCAAATGCTCT+GGG | + | chr1_1:64095467-64095486 | Msa0035750:intron | 30.0% |
| CAACAATAGAAAATAGAGAG+TGG | + | chr1_1:64095569-64095588 | Msa0035750:intron | 30.0% | |
| AATTCCTATGTTCCTTAAGT+TGG | + | chr1_1:64095717-64095736 | Msa0035750:CDS | 30.0% | |
| ATAACCAACTTAAGGAACAT+AGG | - | chr1_1:64095724-64095743 | None:intergenic | 30.0% | |
| CATCACAAATAACCAACTTA+AGG | - | chr1_1:64095732-64095751 | None:intergenic | 30.0% | |
| CATTATGCAACGTTTATTCA+AGG | + | chr1_1:64095962-64095981 | Msa0035750:CDS | 30.0% | |
| ! | TTTTAGGCATTTGCAATATG+AGG | + | chr1_1:64096071-64096090 | Msa0035750:CDS | 30.0% |
| AAATCGGCGATGATAAACTA+GGG | + | chr1_1:64093457-64093476 | Msa0035750:CDS | 35.0% | |
| TGATAAACTAGGGTTTCTCA+AGG | + | chr1_1:64093467-64093486 | Msa0035750:CDS | 35.0% | |
| AGAGTGAAGAGACTGTTTAA+AGG | + | chr1_1:64093597-64093616 | Msa0035750:CDS | 35.0% | |
| TGAACAAATGTGAAGTGCAA+TGG | - | chr1_1:64093684-64093703 | None:intergenic | 35.0% | |
| !! | ATTGTACTTTAGGACCTGTT+TGG | + | chr1_1:64094343-64094362 | Msa0035750:intron | 35.0% |
| ! | TGAAGACATTTAGGGTTGTT+TGG | - | chr1_1:64094612-64094631 | None:intergenic | 35.0% |
| GATCTACGTGAAGACATTTA+GGG | - | chr1_1:64094620-64094639 | None:intergenic | 35.0% | |
| AGATCTACGTGAAGACATTT+AGG | - | chr1_1:64094621-64094640 | None:intergenic | 35.0% | |
| AATGTCTTCACGTAGATCTT+TGG | + | chr1_1:64094622-64094641 | Msa0035750:intron | 35.0% | |
| TAAAACCCTTATCACCTTGT+AGG | + | chr1_1:64094726-64094745 | Msa0035750:intron | 35.0% | |
| GAATAACCTACAAGGTGATA+AGG | - | chr1_1:64094735-64094754 | None:intergenic | 35.0% | |
| AAAAGGGAAAAAGGTGAAGA+AGG | + | chr1_1:64094907-64094926 | Msa0035750:intron | 35.0% | |
| AGAGAACTATGAACTTCCTT+TGG | + | chr1_1:64094934-64094953 | Msa0035750:CDS | 35.0% | |
| AGTTTATCACTTGGAGATGA+TGG | + | chr1_1:64095147-64095166 | Msa0035750:intron | 35.0% | |
| ! | CGGATATTTTATACTGGCAA+AGG | + | chr1_1:64095207-64095226 | Msa0035750:intron | 35.0% |
| !!! | TTTTTTACCTTCAGAGGTAG+GGG | - | chr1_1:64095287-64095306 | None:intergenic | 35.0% |
| !!! | CTTTTTTTACCTTCAGAGGT+AGG | - | chr1_1:64095289-64095308 | None:intergenic | 35.0% |
| ! | CTACCTCTGAAGGTAAAAAA+AGG | + | chr1_1:64095287-64095306 | Msa0035750:intron | 35.0% |
| TAAAGAAGAGTTACCTTCAC+GGG | - | chr1_1:64095431-64095450 | None:intergenic | 35.0% | |
| GCATTTGATAAAAGCAAGCA+AGG | - | chr1_1:64095464-64095483 | None:intergenic | 35.0% | |
| !! | CTTGCTTTTATCAAATGCTC+TGG | + | chr1_1:64095466-64095485 | Msa0035750:intron | 35.0% |
| ! | TGCTTTTATCAAATGCTCTG+GGG | + | chr1_1:64095468-64095487 | Msa0035750:intron | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | + | chr1_1:64095532-64095551 | Msa0035750:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGA+TGG | + | chr1_1:64095536-64095555 | Msa0035750:intron | 35.0% | |
| TCAATCTCGAAATTGTGGAT+GGG | + | chr1_1:64095537-64095556 | Msa0035750:intron | 35.0% | |
| AACATAGGAATTGCTATAGC+TGG | - | chr1_1:64095709-64095728 | None:intergenic | 35.0% | |
| CTTGTACACAATTGTTTCCT+TGG | - | chr1_1:64095782-64095801 | None:intergenic | 35.0% | |
| ATTGTAGGATGAGATTCAAG+AGG | - | chr1_1:64096027-64096046 | None:intergenic | 35.0% | |
| ! | CTCATCCTACAATTGTTGTT+TGG | + | chr1_1:64096034-64096053 | Msa0035750:CDS | 35.0% |
| !! | TCCTACAATTGTTGTTTGGA+AGG | + | chr1_1:64096038-64096057 | Msa0035750:CDS | 35.0% |
| ACCTTCCAAACAACAATTGT+AGG | - | chr1_1:64096042-64096061 | None:intergenic | 35.0% | |
| ! | CTAGTTTATCATCGCCGATT+TGG | - | chr1_1:64093458-64093477 | None:intergenic | 40.0% |
| CAAATCGGCGATGATAAACT+AGG | + | chr1_1:64093456-64093475 | Msa0035750:CDS | 40.0% | |
| GGAGGAAGAATTGATACAAG+AGG | + | chr1_1:64093564-64093583 | Msa0035750:CDS | 40.0% | |
| TAACTAACCAGTTGGAAGGA+AGG | - | chr1_1:64093652-64093671 | None:intergenic | 40.0% | |
| GTAGTAACTAACCAGTTGGA+AGG | - | chr1_1:64093656-64093675 | None:intergenic | 40.0% | |
| TGTATTGCTGTGATCCTTGA+AGG | + | chr1_1:64093902-64093921 | Msa0035750:intron | 40.0% | |
| ACTAAGTGTGATCGGTTACA+TGG | - | chr1_1:64094173-64094192 | None:intergenic | 40.0% | |
| GAACTTCCTTTGGATGTGTT+TGG | + | chr1_1:64094944-64094963 | Msa0035750:CDS | 40.0% | |
| GTGATACCAAACACATCCAA+AGG | - | chr1_1:64094953-64094972 | None:intergenic | 40.0% | |
| ! | GACGACCTATTTCAGTTTTC+CGG | + | chr1_1:64094992-64095011 | Msa0035750:CDS | 40.0% |
| CGCAAGAAGTAATGGTTCTT+GGG | - | chr1_1:64095074-64095093 | None:intergenic | 40.0% | |
| TCGCAAGAAGTAATGGTTCT+TGG | - | chr1_1:64095075-64095094 | None:intergenic | 40.0% | |
| ! | TTTTTACCTTCAGAGGTAGG+GGG | - | chr1_1:64095286-64095305 | None:intergenic | 40.0% |
| !!! | TGCCCTTTTTTTACCTTCAG+AGG | - | chr1_1:64095293-64095312 | None:intergenic | 40.0% |
| AAGGTAAAAAAAGGGCAACC+CGG | + | chr1_1:64095296-64095315 | Msa0035750:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_1:64095362-64095381 | None:intergenic | 40.0% | |
| TCTTGTGTAAACACAGGGTA+AGG | - | chr1_1:64095388-64095407 | None:intergenic | 40.0% | |
| TTACCCTGTGTTTACACAAG+AGG | + | chr1_1:64095387-64095406 | Msa0035750:intron | 40.0% | |
| CAACCTCTTGTGTAAACACA+GGG | - | chr1_1:64095393-64095412 | None:intergenic | 40.0% | |
| ACAACCTCTTGTGTAAACAC+AGG | - | chr1_1:64095394-64095413 | None:intergenic | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | chr1_1:64095398-64095417 | Msa0035750:intron | 40.0% |
| ATCACTAACAAGGCCAAGAT+AGG | + | chr1_1:64095631-64095650 | Msa0035750:CDS | 40.0% | |
| TCACTAACAAGGCCAAGATA+GGG | + | chr1_1:64095632-64095651 | Msa0035750:CDS | 40.0% | |
| !! | TTGTTGTTTGGAAGGTCGAT+TGG | + | chr1_1:64096046-64096065 | Msa0035750:CDS | 40.0% |
| CTCCTGAAATATTTGAGGGC+TGG | + | chr1_1:64093543-64093562 | Msa0035750:CDS | 45.0% | |
| CTCCAGCCCTCAAATATTTC+AGG | - | chr1_1:64093548-64093567 | None:intergenic | 45.0% | |
| CTGAAATATTTGAGGGCTGG+AGG | + | chr1_1:64093546-64093565 | Msa0035750:CDS | 45.0% | |
| TTCAACACCTTCCTTCCAAC+TGG | + | chr1_1:64093642-64093661 | Msa0035750:CDS | 45.0% | |
| CTTATCTACTAACGCGAGCT+TGG | + | chr1_1:64094381-64094400 | Msa0035750:intron | 45.0% | |
| ACACGCCGGAAAACTGAAAT+AGG | - | chr1_1:64095000-64095019 | None:intergenic | 45.0% | |
| GGCGATATCGCAAGAAGTAA+TGG | - | chr1_1:64095082-64095101 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_1:64095363-64095382 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_1:64095366-64095385 | None:intergenic | 45.0% | |
| ! | CTCTGGGGAATTTGTCTTTG+TGG | + | chr1_1:64095483-64095502 | Msa0035750:intron | 45.0% |
| !! | AGAGTGGGTTGTTGACTTTG+TGG | + | chr1_1:64095585-64095604 | Msa0035750:CDS | 45.0% |
| CACTAACAAGGCCAAGATAG+GGG | + | chr1_1:64095633-64095652 | Msa0035750:CDS | 45.0% | |
| TCTCATATCCCCACTTGTTC+GGG | - | chr1_1:64095909-64095928 | None:intergenic | 45.0% | |
| CTCTCATATCCCCACTTGTT+CGG | - | chr1_1:64095910-64095929 | None:intergenic | 45.0% | |
| GATGAGATTCAAGAGGAGCT+GGG | - | chr1_1:64096020-64096039 | None:intergenic | 45.0% | |
| !! | GGAAGGTCGATTGGTGTTTT+AGG | + | chr1_1:64096055-64096074 | Msa0035750:CDS | 45.0% |
| TTTCCGGCGTGTGCAAGAAT+TGG | + | chr1_1:64095008-64095027 | Msa0035750:CDS | 50.0% | |
| TCAATTCCCCCTACCTCTGA+AGG | + | chr1_1:64095277-64095296 | Msa0035750:intron | 50.0% | |
| CAAGCTCAGTACCCCTATCT+TGG | - | chr1_1:64095647-64095666 | None:intergenic | 50.0% | |
| GTTGAGCAACCCGAACAAGT+GGG | + | chr1_1:64095897-64095916 | Msa0035750:CDS | 50.0% | |
| TTGAGCAACCCGAACAAGTG+GGG | + | chr1_1:64095898-64095917 | Msa0035750:CDS | 50.0% | |
| GGATGAGATTCAAGAGGAGC+TGG | - | chr1_1:64096021-64096040 | None:intergenic | 50.0% | |
| CCTCCAATTCTTGCACACGC+CGG | - | chr1_1:64095014-64095033 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr1_1:64095322-64095341 | Msa0035750:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr1_1:64095323-64095342 | Msa0035750:intron | 55.0% | |
| TCCAGGACTTGAACCCGTGA+AGG | + | chr1_1:64095415-64095434 | Msa0035750:intron | 55.0% | |
| ACCTTCACGGGTTCAAGTCC+TGG | - | chr1_1:64095419-64095438 | None:intergenic | 55.0% | |
| CGTTGAGCAACCCGAACAAG+TGG | + | chr1_1:64095896-64095915 | Msa0035750:CDS | 55.0% | |
| CCGGCGTGTGCAAGAATTGG+AGG | + | chr1_1:64095011-64095030 | Msa0035750:CDS | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr1_1:64095318-64095337 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr1_1:64095334-64095353 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr1_1:64095335-64095354 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr1_1:64095334-64095353 | Msa0035750:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr1_1:64095335-64095354 | Msa0035750:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_1:64095350-64095369 | None:intergenic | 60.0% |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr1_1:64095317-64095336 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr1_1:64095328-64095347 | Msa0035750:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr1_1:64095329-64095348 | Msa0035750:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr1_1:64095333-64095352 | Msa0035750:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_1:64095348-64095367 | Msa0035750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64093444 | 64096116 | 64093444 | ID=Msa0035750;Name=Msa0035750 |
| chr1_1 | mRNA | 64093444 | 64096116 | 64093444 | ID=Msa0035750-mRNA-1;Parent=Msa0035750;Name=Msa0035750-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0.33|0.5|4|0|304 |
| chr1_1 | exon | 64093444 | 64093663 | 64093444 | ID=Msa0035750-mRNA-1:exon:20491;Parent=Msa0035750-mRNA-1 |
| chr1_1 | exon | 64094912 | 64095112 | 64094912 | ID=Msa0035750-mRNA-1:exon:20492;Parent=Msa0035750-mRNA-1 |
| chr1_1 | exon | 64095578 | 64095738 | 64095578 | ID=Msa0035750-mRNA-1:exon:20493;Parent=Msa0035750-mRNA-1 |
| chr1_1 | exon | 64095784 | 64096116 | 64095784 | ID=Msa0035750-mRNA-1:exon:20494;Parent=Msa0035750-mRNA-1 |
| chr1_1 | CDS | 64093444 | 64093663 | 64093444 | ID=Msa0035750-mRNA-1:cds;Parent=Msa0035750-mRNA-1 |
| chr1_1 | CDS | 64094912 | 64095112 | 64094912 | ID=Msa0035750-mRNA-1:cds;Parent=Msa0035750-mRNA-1 |
| chr1_1 | CDS | 64095578 | 64095738 | 64095578 | ID=Msa0035750-mRNA-1:cds;Parent=Msa0035750-mRNA-1 |
| chr1_1 | CDS | 64095784 | 64096116 | 64095784 | ID=Msa0035750-mRNA-1:cds;Parent=Msa0035750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
