Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396120 | KEH44165.1 | 44.847 | 359 | 120 | 6 | 9 | 303 | 10 | 354 | 2.88e-82 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396120 | sp|Q9SRH9|SNL1_ARATH | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.94e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396120 | A0A072W1J8 | 44.847 | 359 | 120 | 6 | 9 | 303 | 10 | 354 | 1.38e-82 | 262 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1396120 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035750 | Msa1396120 | 0.975448 | 5.698637e-140 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396120 | MtrunA17_Chr3g0093911 | 60.309 | 194 | 46 | 3 | 138 | 304 | 161 | 350 | 1.85e-68 | 216 |
| Msa1396120 | MtrunA17_Chr3g0093911 | 76.667 | 60 | 14 | 0 | 77 | 136 | 1 | 60 | 8.48e-24 | 99.4 |
| Msa1396120 | MtrunA17_Chr1g0207351 | 59.887 | 177 | 47 | 3 | 146 | 304 | 196 | 366 | 6.35e-62 | 200 |
| Msa1396120 | MtrunA17_Chr1g0207351 | 70.000 | 60 | 14 | 1 | 81 | 136 | 16 | 75 | 7.98e-17 | 80.1 |
| Msa1396120 | MtrunA17_Chr1g0202841 | 56.983 | 179 | 59 | 2 | 142 | 304 | 3 | 179 | 3.57e-61 | 192 |
| Msa1396120 | MtrunA17_Chr7g0252101 | 58.564 | 181 | 55 | 3 | 140 | 304 | 256 | 432 | 1.30e-58 | 194 |
| Msa1396120 | MtrunA17_Chr7g0252101 | 60.156 | 128 | 46 | 4 | 12 | 135 | 16 | 142 | 4.92e-39 | 142 |
| Msa1396120 | MtrunA17_Chr1g0209051 | 56.983 | 179 | 57 | 2 | 141 | 303 | 96 | 270 | 1.92e-58 | 188 |
| Msa1396120 | MtrunA17_Chr4g0075971 | 44.700 | 217 | 88 | 5 | 104 | 303 | 400 | 601 | 5.63e-45 | 160 |
| Msa1396120 | MtrunA17_Chr4g0075971 | 55.396 | 139 | 45 | 3 | 10 | 133 | 173 | 309 | 1.52e-36 | 137 |
| Msa1396120 | MtrunA17_Chr3g0077801 | 50.581 | 172 | 65 | 4 | 146 | 301 | 182 | 349 | 1.00e-41 | 147 |
| Msa1396120 | MtrunA17_Chr3g0077801 | 56.061 | 66 | 29 | 0 | 77 | 142 | 1 | 66 | 4.14e-18 | 83.6 |
| Msa1396120 | MtrunA17_Chr7g0243331 | 48.023 | 177 | 67 | 4 | 146 | 304 | 181 | 350 | 3.26e-41 | 146 |
| Msa1396120 | MtrunA17_Chr7g0243331 | 55.738 | 61 | 27 | 0 | 82 | 142 | 6 | 66 | 4.19e-16 | 77.8 |
| Msa1396120 | MtrunA17_Chr6g0488101 | 42.273 | 220 | 87 | 7 | 110 | 304 | 251 | 455 | 3.46e-39 | 143 |
| Msa1396120 | MtrunA17_Chr6g0488101 | 45.205 | 146 | 57 | 3 | 11 | 133 | 10 | 155 | 4.16e-31 | 121 |
| Msa1396120 | MtrunA17_Chr6g0488271 | 41.818 | 220 | 88 | 7 | 110 | 304 | 211 | 415 | 1.98e-38 | 140 |
| Msa1396120 | MtrunA17_Chr6g0488271 | 49.074 | 108 | 38 | 1 | 43 | 133 | 8 | 115 | 1.38e-27 | 110 |
| Msa1396120 | MtrunA17_Chr3g0112311 | 46.154 | 182 | 72 | 5 | 144 | 302 | 177 | 355 | 2.79e-37 | 135 |
| Msa1396120 | MtrunA17_Chr3g0112311 | 61.404 | 57 | 22 | 0 | 77 | 133 | 1 | 57 | 3.20e-17 | 80.9 |
| Msa1396120 | MtrunA17_Chr4g0075861 | 55.396 | 139 | 45 | 3 | 10 | 133 | 173 | 309 | 3.24e-37 | 136 |
| Msa1396120 | MtrunA17_Chr3g0077851 | 37.903 | 248 | 109 | 7 | 85 | 303 | 104 | 335 | 1.20e-35 | 131 |
| Msa1396120 | MtrunA17_Chr3g0077851 | 71.739 | 46 | 13 | 0 | 96 | 141 | 4 | 49 | 7.76e-17 | 79.7 |
| Msa1396120 | MtrunA17_Chr3g0077901 | 35.887 | 248 | 114 | 7 | 85 | 303 | 140 | 371 | 3.50e-34 | 128 |
| Msa1396120 | MtrunA17_Chr3g0077901 | 36.000 | 150 | 85 | 3 | 73 | 215 | 17 | 162 | 8.57e-20 | 88.6 |
| Msa1396120 | MtrunA17_Chr6g0452641 | 42.935 | 184 | 76 | 4 | 146 | 304 | 161 | 340 | 1.48e-33 | 125 |
| Msa1396120 | MtrunA17_Chr3g0123471 | 42.935 | 184 | 75 | 6 | 138 | 296 | 81 | 259 | 6.79e-33 | 122 |
| Msa1396120 | MtrunA17_Chr1g0209191 | 56.436 | 101 | 38 | 2 | 206 | 303 | 1 | 98 | 1.15e-31 | 114 |
| Msa1396120 | MtrunA17_Chr1g0187941 | 48.529 | 136 | 54 | 1 | 141 | 260 | 2 | 137 | 1.75e-30 | 112 |
| Msa1396120 | MtrunA17_Chr1g0196241 | 70.886 | 79 | 19 | 2 | 198 | 275 | 4 | 79 | 1.26e-29 | 108 |
| Msa1396120 | MtrunA17_Chr6g0486591 | 40.994 | 161 | 66 | 5 | 167 | 302 | 1 | 157 | 8.83e-27 | 102 |
| Msa1396120 | MtrunA17_Chr1g0209061 | 50.926 | 108 | 43 | 1 | 9 | 116 | 10 | 107 | 3.23e-25 | 97.4 |
| Msa1396120 | MtrunA17_Chr1g0206951 | 65.672 | 67 | 23 | 0 | 80 | 146 | 2 | 68 | 6.17e-23 | 92.0 |
| Msa1396120 | MtrunA17_Chr1g0196231 | 64.000 | 75 | 20 | 2 | 62 | 136 | 216 | 283 | 9.25e-22 | 94.0 |
| Msa1396120 | MtrunA17_Chr8g0364231 | 44.068 | 118 | 59 | 3 | 8 | 125 | 41 | 151 | 9.05e-20 | 89.7 |
| Msa1396120 | MtrunA17_Chr3g0122991 | 42.308 | 130 | 46 | 3 | 163 | 266 | 148 | 274 | 6.26e-19 | 84.7 |
| Msa1396120 | MtrunA17_Chr3g0122991 | 62.069 | 58 | 21 | 1 | 79 | 136 | 2 | 58 | 9.25e-18 | 81.6 |
| Msa1396120 | MtrunA17_Chr5g0415031 | 44.231 | 104 | 51 | 3 | 8 | 111 | 42 | 138 | 6.58e-18 | 84.3 |
| Msa1396120 | MtrunA17_Chr7g0243391 | 49.315 | 73 | 37 | 0 | 69 | 141 | 10 | 82 | 2.42e-17 | 79.7 |
| Msa1396120 | MtrunA17_Chr6g0452001 | 38.983 | 118 | 65 | 2 | 8 | 125 | 62 | 172 | 1.89e-16 | 80.1 |
| Msa1396120 | MtrunA17_Chr1g0209201 | 55.714 | 70 | 29 | 2 | 9 | 78 | 16 | 83 | 7.75e-16 | 73.2 |
| Msa1396120 | MtrunA17_Chr3g0077861 | 63.077 | 65 | 22 | 2 | 9 | 72 | 90 | 153 | 6.64e-15 | 71.2 |
| Msa1396120 | MtrunA17_Chr6g0452021 | 38.462 | 117 | 63 | 3 | 9 | 125 | 43 | 150 | 9.74e-15 | 74.3 |
| Msa1396120 | MtrunA17_Chr3g0077911 | 63.077 | 65 | 22 | 2 | 9 | 72 | 90 | 153 | 1.05e-14 | 70.5 |
| Msa1396120 | MtrunA17_Chr1g0206781 | 52.239 | 67 | 31 | 1 | 11 | 77 | 13 | 78 | 1.53e-14 | 68.9 |
| Msa1396120 | MtrunA17_Chr1g0206771 | 43.373 | 83 | 39 | 2 | 11 | 93 | 18 | 92 | 1.49e-13 | 67.8 |
| Msa1396120 | MtrunA17_Chr1g0206771 | 46.377 | 69 | 36 | 1 | 4 | 72 | 90 | 157 | 5.60e-12 | 63.5 |
| Msa1396120 | MtrunA17_Chr1g0205811 | 38.596 | 114 | 56 | 4 | 3 | 110 | 7 | 112 | 1.95e-13 | 65.9 |
| Msa1396120 | MtrunA17_Chr1g0205861 | 41.379 | 87 | 45 | 2 | 11 | 92 | 18 | 103 | 1.37e-11 | 60.8 |
| Msa1396120 | MtrunA17_Chr3g0077811 | 48.101 | 79 | 38 | 3 | 1 | 78 | 6 | 82 | 2.50e-11 | 60.1 |
| Msa1396120 | MtrunA17_Chr7g0218911 | 48.387 | 62 | 31 | 1 | 13 | 74 | 2 | 62 | 3.47e-11 | 59.7 |
| Msa1396120 | MtrunA17_Chr6g0459061 | 30.216 | 139 | 70 | 5 | 146 | 264 | 187 | 318 | 4.38e-11 | 63.2 |
| Msa1396120 | MtrunA17_Chr1g0156171 | 64.103 | 39 | 14 | 0 | 39 | 77 | 16 | 54 | 7.34e-11 | 58.9 |
| Msa1396120 | MtrunA17_Chr1g0205821 | 47.222 | 72 | 37 | 1 | 6 | 77 | 96 | 166 | 7.70e-11 | 60.1 |
| Msa1396120 | MtrunA17_Chr8g0364021 | 43.038 | 79 | 44 | 1 | 8 | 86 | 43 | 120 | 9.59e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396120 | AT3G01320.2 | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.98e-18 | 85.9 |
| Msa1396120 | AT3G01320.1 | 36.496 | 137 | 72 | 3 | 8 | 144 | 56 | 177 | 2.99e-18 | 85.9 |
| Msa1396120 | AT1G24190.3 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.32e-17 | 84.0 |
| Msa1396120 | AT1G24190.1 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.46e-17 | 83.6 |
| Msa1396120 | AT1G24190.2 | 44.444 | 99 | 48 | 2 | 8 | 106 | 13 | 104 | 1.54e-17 | 83.6 |
| Msa1396120 | AT5G15020.2 | 39.496 | 119 | 61 | 3 | 8 | 125 | 51 | 159 | 2.75e-17 | 82.8 |
| Msa1396120 | AT5G15020.1 | 39.496 | 119 | 61 | 3 | 8 | 125 | 51 | 159 | 2.75e-17 | 82.8 |
| Msa1396120 | AT1G59890.4 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.02e-16 | 79.0 |
| Msa1396120 | AT1G59890.1 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.13e-16 | 79.0 |
| Msa1396120 | AT1G59890.3 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.32e-16 | 79.0 |
| Msa1396120 | AT1G59890.2 | 51.807 | 83 | 37 | 2 | 9 | 89 | 45 | 126 | 5.43e-16 | 79.0 |
| Msa1396120 | AT1G10450.2 | 57.971 | 69 | 28 | 1 | 9 | 77 | 33 | 100 | 1.25e-15 | 77.8 |
| Msa1396120 | AT1G10450.1 | 57.971 | 69 | 28 | 1 | 9 | 77 | 33 | 100 | 1.25e-15 | 77.8 |
| Msa1396120 | AT1G10450.3 | 57.971 | 69 | 28 | 1 | 9 | 77 | 84 | 151 | 1.49e-15 | 77.8 |
| Msa1396120 | AT1G70060.2 | 55.224 | 67 | 29 | 1 | 8 | 74 | 13 | 78 | 2.40e-15 | 77.0 |
| Msa1396120 | AT1G70060.1 | 55.224 | 67 | 29 | 1 | 8 | 74 | 13 | 78 | 2.40e-15 | 77.0 |
| Msa1396120 | AT1G70030.3 | 50.000 | 66 | 32 | 1 | 9 | 74 | 22 | 86 | 3.09e-12 | 63.2 |
| Msa1396120 | AT5G15025.1 | 44.872 | 78 | 42 | 1 | 8 | 85 | 46 | 122 | 5.63e-12 | 62.4 |
| Msa1396120 | AT1G70030.2 | 50.000 | 66 | 32 | 1 | 9 | 74 | 22 | 86 | 8.41e-12 | 62.4 |
| Msa1396120 | AT1G70030.1 | 50.000 | 66 | 32 | 1 | 9 | 74 | 11 | 75 | 1.03e-11 | 62.8 |
| Msa1396120 | AT4G12020.6 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa1396120 | AT4G12020.8 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa1396120 | AT4G12020.1 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa1396120 | AT4G12020.9 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.11e-11 | 64.7 |
| Msa1396120 | AT4G12020.2 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.13e-11 | 64.7 |
| Msa1396120 | AT4G12020.7 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.14e-11 | 64.7 |
| Msa1396120 | AT4G12020.4 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.28e-11 | 64.7 |
| Msa1396120 | AT4G12020.11 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.42e-11 | 64.7 |
| Msa1396120 | AT4G12020.3 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.46e-11 | 64.7 |
| Msa1396120 | AT4G12020.5 | 45.679 | 81 | 41 | 3 | 9 | 89 | 241 | 318 | 3.51e-11 | 64.7 |
| Msa1396120 | AT4G12020.10 | 45.679 | 81 | 41 | 3 | 9 | 89 | 308 | 385 | 3.55e-11 | 64.7 |
Find 58 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACATAAAGATTTAATTT+TGG | 0.171702 | tig0022001:+36474 | Msa1396120:CDS |
| CTCCAGCCCTCAAATATTTC+AGG | 0.192555 | tig0022001:-36402 | None:intergenic |
| CTCTCATATCCCCACTTGTT+CGG | 0.274296 | tig0022001:-38765 | None:intergenic |
| TTCTAGTCTGAAATAATTCA+TGG | 0.326313 | tig0022001:-38673 | None:intergenic |
| TGTTGTGATAAAAGGGAAAA+AGG | 0.329108 | tig0022001:+37756 | Msa1396120:intron |
| GAACTTCCTTTGGATGTGTT+TGG | 0.331499 | tig0022001:+37802 | Msa1396120:CDS |
| TCTCATATCCCCACTTGTTC+GGG | 0.349130 | tig0022001:-38764 | None:intergenic |
| AGAGTGAAGAGACTGTTTAA+AGG | 0.353217 | tig0022001:+36454 | Msa1396120:CDS |
| CTCATCCTACAATTGTTGTT+TGG | 0.366474 | tig0022001:+38892 | Msa1396120:CDS |
| CTAGTTTATCATCGCCGATT+TGG | 0.368172 | tig0022001:-36312 | None:intergenic |
| TCGCAAGAAGTAATGGTTCT+TGG | 0.379526 | tig0022001:-37930 | None:intergenic |
| TTTCCGGCGTGTGCAAGAAT+TGG | 0.380354 | tig0022001:+37866 | Msa1396120:CDS |
| AGAGAACTATGAACTTCCTT+TGG | 0.396409 | tig0022001:+37792 | Msa1396120:CDS |
| ACACGCCGGAAAACTGAAAT+AGG | 0.402270 | tig0022001:-37855 | None:intergenic |
| TAAAACTCCTGAAATATTTG+AGG | 0.412179 | tig0022001:+36395 | Msa1396120:CDS |
| ATCACTAACAAGGCCAAGAT+AGG | 0.412555 | tig0022001:+38489 | Msa1396120:CDS |
| CGCAAGAAGTAATGGTTCTT+GGG | 0.414011 | tig0022001:-37929 | None:intergenic |
| AATTCCTATGTTCCTTAAGT+TGG | 0.417551 | tig0022001:+38575 | Msa1396120:CDS |
| AAAACTCCTGAAATATTTGA+GGG | 0.421671 | tig0022001:+36396 | Msa1396120:CDS |
| TATTTCAGACTAGAAACTTT+GGG | 0.422875 | tig0022001:+38681 | Msa1396120:CDS |
| GGATGAGATTCAAGAGGAGC+TGG | 0.423352 | tig0022001:-38876 | None:intergenic |
| TTCAACACCTTCCTTCCAAC+TGG | 0.425335 | tig0022001:+36499 | Msa1396120:CDS |
| CAAGCTCAGTACCCCTATCT+TGG | 0.426294 | tig0022001:-38502 | None:intergenic |
| CAAATCGGCGATGATAAACT+AGG | 0.426757 | tig0022001:+36313 | Msa1396120:CDS |
| CATCACAAATAACCAACTTA+AGG | 0.429922 | tig0022001:-38587 | None:intergenic |
| TTATTTCAGACTAGAAACTT+TGG | 0.431425 | tig0022001:+38680 | Msa1396120:CDS |
| CCGGCGTGTGCAAGAATTGG+AGG | 0.450628 | tig0022001:+37869 | Msa1396120:CDS |
| AACATAGGAATTGCTATAGC+TGG | 0.451808 | tig0022001:-38564 | None:intergenic |
| CATTATGCAACGTTTATTCA+AGG | 0.452872 | tig0022001:+38820 | Msa1396120:CDS |
| ATATTAAATTTCTTAAATTG+AGG | 0.460318 | tig0022001:+38535 | Msa1396120:CDS |
| CTCCTGAAATATTTGAGGGC+TGG | 0.470760 | tig0022001:+36400 | Msa1396120:CDS |
| ACCTTCCAAACAACAATTGT+AGG | 0.478332 | tig0022001:-38897 | None:intergenic |
| TCCTACAATTGTTGTTTGGA+AGG | 0.481880 | tig0022001:+38896 | Msa1396120:CDS |
| GAATAATAACTCTTAGCATA+AGG | 0.482018 | tig0022001:-37958 | None:intergenic |
| AGAGTGGGTTGTTGACTTTG+TGG | 0.494217 | tig0022001:+38443 | Msa1396120:CDS |
| AAGATGAAGAACTTCCAAAT+CGG | 0.523463 | tig0022001:+36298 | None:intergenic |
| TCACTAACAAGGCCAAGATA+GGG | 0.533592 | tig0022001:+38490 | Msa1396120:CDS |
| ATAACCAACTTAAGGAACAT+AGG | 0.538258 | tig0022001:-38579 | None:intergenic |
| ATTATGCAACGTTTATTCAA+GGG | 0.539023 | tig0022001:+38821 | Msa1396120:CDS |
| GGCGATATCGCAAGAAGTAA+TGG | 0.543124 | tig0022001:-37937 | None:intergenic |
| TAACTAACCAGTTGGAAGGA+AGG | 0.563424 | tig0022001:-36506 | None:intergenic |
| AACAATAGAAAATAGAGAGT+GGG | 0.566020 | tig0022001:+38428 | Msa1396120:intron |
| CGTTGAGCAACCCGAACAAG+TGG | 0.576312 | tig0022001:+38754 | Msa1396120:CDS |
| CTGAAATATTTGAGGGCTGG+AGG | 0.578589 | tig0022001:+36403 | Msa1396120:CDS |
| CAACAATAGAAAATAGAGAG+TGG | 0.582774 | tig0022001:+38427 | Msa1396120:intron |
| TTGTTGTTTGGAAGGTCGAT+TGG | 0.583682 | tig0022001:+38904 | Msa1396120:CDS |
| GATGAGATTCAAGAGGAGCT+GGG | 0.594444 | tig0022001:-38875 | None:intergenic |
| AAATCGGCGATGATAAACTA+GGG | 0.599368 | tig0022001:+36314 | Msa1396120:CDS |
| GTGATACCAAACACATCCAA+AGG | 0.609611 | tig0022001:-37808 | None:intergenic |
| CACTAACAAGGCCAAGATAG+GGG | 0.611011 | tig0022001:+38491 | Msa1396120:CDS |
| GTAGTAACTAACCAGTTGGA+AGG | 0.611566 | tig0022001:-36510 | None:intergenic |
| TGATAAACTAGGGTTTCTCA+AGG | 0.637359 | tig0022001:+36324 | Msa1396120:CDS |
| CCTCCAATTCTTGCACACGC+CGG | 0.653779 | tig0022001:-37869 | None:intergenic |
| GGAGGAAGAATTGATACAAG+AGG | 0.656290 | tig0022001:+36421 | Msa1396120:CDS |
| TTGAGCAACCCGAACAAGTG+GGG | 0.657706 | tig0022001:+38756 | Msa1396120:CDS |
| GTTGAGCAACCCGAACAAGT+GGG | 0.660821 | tig0022001:+38755 | Msa1396120:CDS |
| AATATATGTCATCACTAACA+AGG | 0.661183 | tig0022001:+38479 | Msa1396120:CDS |
| ATTGTAGGATGAGATTCAAG+AGG | 0.663965 | tig0022001:-38882 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACAAGATAATTTTTT+AGG | + | tig0022001:36623-36642 | Msa1396120:intron | 10.0% |
| !! | ATAAATAAAATCAAAACATA+TGG | + | tig0022001:37709-37728 | Msa1396120:intron | 10.0% |
| !! | ATATTAAATTTCTTAAATTG+AGG | + | tig0022001:38535-38554 | Msa1396120:CDS | 10.0% |
| !! | TAAAAATATATATGTCTCAT+TGG | + | tig0022001:36942-36961 | Msa1396120:intron | 15.0% |
| !!! | ACTTGATTAATTTTTGTTTT+AGG | + | tig0022001:37058-37077 | Msa1396120:intron | 15.0% |
| !!! | CTTGATTAATTTTTGTTTTA+GGG | + | tig0022001:37059-37078 | Msa1396120:intron | 15.0% |
| !!! | TTGATTAATTTTTGTTTTAG+GGG | + | tig0022001:37060-37079 | Msa1396120:intron | 15.0% |
| !!! | TTTTAGTATATGCTATAATT+TGG | - | tig0022001:37361-37380 | None:intergenic | 15.0% |
| !!! | AGGACATAAAGATTTAATTT+TGG | + | tig0022001:36474-36493 | Msa1396120:CDS | 20.0% |
| !!! | GGACATAAAGATTTAATTTT+GGG | + | tig0022001:36475-36494 | Msa1396120:CDS | 20.0% |
| !! | TTATGTCTATTATTTATGTG+TGG | + | tig0022001:36690-36709 | Msa1396120:intron | 20.0% |
| !! | TTCATAACTTTCTTATGAAA+TGG | + | tig0022001:36906-36925 | Msa1396120:intron | 20.0% |
| !! | TCATTGGATAATTATATCAT+TGG | + | tig0022001:36958-36977 | Msa1396120:intron | 20.0% |
| !! | TCATTGGATATAATATATCA+TGG | + | tig0022001:36974-36993 | Msa1396120:intron | 20.0% |
| !! | AACTATATGATTGTTTATGA+TGG | + | tig0022001:37125-37144 | Msa1396120:intron | 20.0% |
| !!! | TTTTCATAAGTTTTCCAATA+TGG | + | tig0022001:37326-37345 | Msa1396120:intron | 20.0% |
| !!! | TTTGGTTTTATATACCATAT+TGG | - | tig0022001:37343-37362 | None:intergenic | 20.0% |
| !!! | TTGTGTATTTGATAATATCA+TGG | - | tig0022001:37667-37686 | None:intergenic | 20.0% |
| !!! | ATTTTACTGGAGAAATTTTT+TGG | + | tig0022001:37903-37922 | Msa1396120:CDS | 20.0% |
| !!! | AAGTGATAAACTTTTTAGTT+GGG | - | tig0022001:37997-38016 | None:intergenic | 20.0% |
| ! | TAAAACTCCTGAAATATTTG+AGG | + | tig0022001:36395-36414 | Msa1396120:CDS | 25.0% |
| ! | AAAACTCCTGAAATATTTGA+GGG | + | tig0022001:36396-36415 | Msa1396120:CDS | 25.0% |
| ! | AAGATGCAGATAAAGATATA+TGG | - | tig0022001:36605-36624 | None:intergenic | 25.0% |
| ! | TAACATGATGAACAATTACA+TGG | - | tig0022001:36725-36744 | None:intergenic | 25.0% |
| ! | AGAAAATAGAAATACCTTCA+AGG | - | tig0022001:36776-36795 | None:intergenic | 25.0% |
| ! | AAAATGCAATATGCATTTGA+TGG | + | tig0022001:36825-36844 | Msa1396120:intron | 25.0% |
| ! | AAATGCAATATGCATTTGAT+GGG | + | tig0022001:36826-36845 | Msa1396120:intron | 25.0% |
| ! | TAGAAGTTGAATTGTACTTT+AGG | + | tig0022001:37190-37209 | Msa1396120:intron | 25.0% |
| ! | AATAACATGAATAACCTACA+AGG | - | tig0022001:37601-37620 | None:intergenic | 25.0% |
| ! | TGATAATATCATGGAAAATG+AGG | - | tig0022001:37658-37677 | None:intergenic | 25.0% |
| !! | GGACTTTTCATAAATTTTAC+TGG | + | tig0022001:37890-37909 | Msa1396120:CDS | 25.0% |
| ! | GAATAATAACTCTTAGCATA+AGG | - | tig0022001:37961-37980 | None:intergenic | 25.0% |
| !!! | CAAGTGATAAACTTTTTAGT+TGG | - | tig0022001:37998-38017 | None:intergenic | 25.0% |
| ! | CAACTAAAAAGTTTATCACT+TGG | + | tig0022001:37996-38015 | Msa1396120:intron | 25.0% |
| ! | AATATGTAACATAGTTAGAG+CGG | - | tig0022001:38041-38060 | None:intergenic | 25.0% |
| ! | AACTATGTTACATATTCTAG+CGG | + | tig0022001:38045-38064 | Msa1396120:intron | 25.0% |
| ! | GATTTCGTTATTCTTGTAAA+TGG | - | tig0022001:38117-38136 | None:intergenic | 25.0% |
| ! | AACAATAGAAAATAGAGAGT+GGG | + | tig0022001:38428-38447 | Msa1396120:intron | 25.0% |
| ! | AATATATGTCATCACTAACA+AGG | + | tig0022001:38479-38498 | Msa1396120:CDS | 25.0% |
| !! | AGTACTTTATTTATTGTCCA+AGG | + | tig0022001:38620-38639 | Msa1396120:intron | 25.0% |
| !! | TTCTAGTCTGAAATAATTCA+TGG | - | tig0022001:38676-38695 | None:intergenic | 25.0% |
| ! | TTATTTCAGACTAGAAACTT+TGG | + | tig0022001:38680-38699 | Msa1396120:CDS | 25.0% |
| ! | TATTTCAGACTAGAAACTTT+GGG | + | tig0022001:38681-38700 | Msa1396120:CDS | 25.0% |
| !! | GCATTATTTTCTATTTCGAT+TGG | + | tig0022001:38711-38730 | Msa1396120:CDS | 25.0% |
| ! | ATTATGCAACGTTTATTCAA+GGG | + | tig0022001:38821-38840 | Msa1396120:CDS | 25.0% |
| AAAAGTAGTAACTAACCAGT+TGG | - | tig0022001:36517-36536 | None:intergenic | 30.0% | |
| CTTATTCTACTAAGTGTGAT+CGG | - | tig0022001:37038-37057 | None:intergenic | 30.0% | |
| ! | TTATGATGGAAAAGTACACA+AGG | + | tig0022001:37139-37158 | Msa1396120:intron | 30.0% |
| TGAAATAAGTCAATCCAAAC+AGG | - | tig0022001:37217-37236 | None:intergenic | 30.0% | |
| AATAACCTACAAGGTGATAA+GGG | - | tig0022001:37592-37611 | None:intergenic | 30.0% | |
| ! | ACTATCCTTGTTGTGATAAA+AGG | + | tig0022001:37748-37767 | Msa1396120:intron | 30.0% |
| ! | CTATCCTTGTTGTGATAAAA+GGG | + | tig0022001:37749-37768 | Msa1396120:intron | 30.0% |
| ! | TTTTCCCTTTTATCACAACA+AGG | - | tig0022001:37756-37775 | None:intergenic | 30.0% |
| TGTTGTGATAAAAGGGAAAA+AGG | + | tig0022001:37756-37775 | Msa1396120:intron | 30.0% | |
| TTAGTTGGGTATGCTAATAA+AGG | - | tig0022001:37983-38002 | None:intergenic | 30.0% | |
| !! | TTCTAGCGGATATTTTATAC+TGG | + | tig0022001:38059-38078 | Msa1396120:intron | 30.0% |
| ! | GGATATTTTATACTGGCAAA+GGG | + | tig0022001:38066-38085 | Msa1396120:intron | 30.0% |
| !!! | TTTTTTTACCTTCAGAGGTA+GGG | - | tig0022001:38146-38165 | None:intergenic | 30.0% |
| ! | TACCTCTGAAGGTAAAAAAA+GGG | + | tig0022001:38146-38165 | Msa1396120:intron | 30.0% |
| TTAAAGAAGAGTTACCTTCA+CGG | - | tig0022001:38290-38309 | None:intergenic | 30.0% | |
| !! | TTGCTTTTATCAAATGCTCT+GGG | + | tig0022001:38325-38344 | Msa1396120:intron | 30.0% |
| CAACAATAGAAAATAGAGAG+TGG | + | tig0022001:38427-38446 | Msa1396120:intron | 30.0% | |
| AATTCCTATGTTCCTTAAGT+TGG | + | tig0022001:38575-38594 | Msa1396120:CDS | 30.0% | |
| ATAACCAACTTAAGGAACAT+AGG | - | tig0022001:38582-38601 | None:intergenic | 30.0% | |
| CATCACAAATAACCAACTTA+AGG | - | tig0022001:38590-38609 | None:intergenic | 30.0% | |
| CATTATGCAACGTTTATTCA+AGG | + | tig0022001:38820-38839 | Msa1396120:CDS | 30.0% | |
| ! | TTTTAGGCATTTGCAATATG+AGG | + | tig0022001:38929-38948 | Msa1396120:CDS | 30.0% |
| AAATCGGCGATGATAAACTA+GGG | + | tig0022001:36314-36333 | Msa1396120:CDS | 35.0% | |
| TGATAAACTAGGGTTTCTCA+AGG | + | tig0022001:36324-36343 | Msa1396120:CDS | 35.0% | |
| AGAGTGAAGAGACTGTTTAA+AGG | + | tig0022001:36454-36473 | Msa1396120:CDS | 35.0% | |
| TGAACAAATGTGAAGTGCAA+TGG | - | tig0022001:36541-36560 | None:intergenic | 35.0% | |
| !! | ATTGTACTTTAGGACCTGTT+TGG | + | tig0022001:37200-37219 | Msa1396120:intron | 35.0% |
| ! | TGAAGACATTTAGGGTTGTT+TGG | - | tig0022001:37469-37488 | None:intergenic | 35.0% |
| GATCTACGTGAAGACATTTA+GGG | - | tig0022001:37477-37496 | None:intergenic | 35.0% | |
| AGATCTACGTGAAGACATTT+AGG | - | tig0022001:37478-37497 | None:intergenic | 35.0% | |
| AATGTCTTCACGTAGATCTT+TGG | + | tig0022001:37479-37498 | Msa1396120:intron | 35.0% | |
| TAAAACCCTTATCACCTTGT+AGG | + | tig0022001:37584-37603 | Msa1396120:intron | 35.0% | |
| GAATAACCTACAAGGTGATA+AGG | - | tig0022001:37593-37612 | None:intergenic | 35.0% | |
| AAAAGGGAAAAAGGTGAAGA+AGG | + | tig0022001:37765-37784 | Msa1396120:intron | 35.0% | |
| AGAGAACTATGAACTTCCTT+TGG | + | tig0022001:37792-37811 | Msa1396120:CDS | 35.0% | |
| AGTTTATCACTTGGAGATGA+TGG | + | tig0022001:38005-38024 | Msa1396120:intron | 35.0% | |
| ! | CGGATATTTTATACTGGCAA+AGG | + | tig0022001:38065-38084 | Msa1396120:intron | 35.0% |
| !!! | TTTTTTACCTTCAGAGGTAG+GGG | - | tig0022001:38145-38164 | None:intergenic | 35.0% |
| !!! | CTTTTTTTACCTTCAGAGGT+AGG | - | tig0022001:38147-38166 | None:intergenic | 35.0% |
| ! | CTACCTCTGAAGGTAAAAAA+AGG | + | tig0022001:38145-38164 | Msa1396120:intron | 35.0% |
| TAAAGAAGAGTTACCTTCAC+GGG | - | tig0022001:38289-38308 | None:intergenic | 35.0% | |
| GCATTTGATAAAAGCAAGCA+AGG | - | tig0022001:38322-38341 | None:intergenic | 35.0% | |
| !! | CTTGCTTTTATCAAATGCTC+TGG | + | tig0022001:38324-38343 | Msa1396120:intron | 35.0% |
| ! | TGCTTTTATCAAATGCTCTG+GGG | + | tig0022001:38326-38345 | Msa1396120:intron | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | + | tig0022001:38390-38409 | Msa1396120:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGA+TGG | + | tig0022001:38394-38413 | Msa1396120:intron | 35.0% | |
| TCAATCTCGAAATTGTGGAT+GGG | + | tig0022001:38395-38414 | Msa1396120:intron | 35.0% | |
| AACATAGGAATTGCTATAGC+TGG | - | tig0022001:38567-38586 | None:intergenic | 35.0% | |
| CTTGTACACAATTGTTTCCT+TGG | - | tig0022001:38640-38659 | None:intergenic | 35.0% | |
| ATTGTAGGATGAGATTCAAG+AGG | - | tig0022001:38885-38904 | None:intergenic | 35.0% | |
| ! | CTCATCCTACAATTGTTGTT+TGG | + | tig0022001:38892-38911 | Msa1396120:CDS | 35.0% |
| !! | TCCTACAATTGTTGTTTGGA+AGG | + | tig0022001:38896-38915 | Msa1396120:CDS | 35.0% |
| ACCTTCCAAACAACAATTGT+AGG | - | tig0022001:38900-38919 | None:intergenic | 35.0% | |
| ! | CTAGTTTATCATCGCCGATT+TGG | - | tig0022001:36315-36334 | None:intergenic | 40.0% |
| CAAATCGGCGATGATAAACT+AGG | + | tig0022001:36313-36332 | Msa1396120:CDS | 40.0% | |
| GGAGGAAGAATTGATACAAG+AGG | + | tig0022001:36421-36440 | Msa1396120:CDS | 40.0% | |
| TAACTAACCAGTTGGAAGGA+AGG | - | tig0022001:36509-36528 | None:intergenic | 40.0% | |
| GTAGTAACTAACCAGTTGGA+AGG | - | tig0022001:36513-36532 | None:intergenic | 40.0% | |
| TGTATTGCTGTGATCCTTGA+AGG | + | tig0022001:36759-36778 | Msa1396120:intron | 40.0% | |
| ACTAAGTGTGATCGGTTACA+TGG | - | tig0022001:37030-37049 | None:intergenic | 40.0% | |
| GAACTTCCTTTGGATGTGTT+TGG | + | tig0022001:37802-37821 | Msa1396120:CDS | 40.0% | |
| GTGATACCAAACACATCCAA+AGG | - | tig0022001:37811-37830 | None:intergenic | 40.0% | |
| ! | GACGACCTATTTCAGTTTTC+CGG | + | tig0022001:37850-37869 | Msa1396120:CDS | 40.0% |
| CGCAAGAAGTAATGGTTCTT+GGG | - | tig0022001:37932-37951 | None:intergenic | 40.0% | |
| TCGCAAGAAGTAATGGTTCT+TGG | - | tig0022001:37933-37952 | None:intergenic | 40.0% | |
| ! | TTTTTACCTTCAGAGGTAGG+GGG | - | tig0022001:38144-38163 | None:intergenic | 40.0% |
| !!! | TGCCCTTTTTTTACCTTCAG+AGG | - | tig0022001:38151-38170 | None:intergenic | 40.0% |
| AAGGTAAAAAAAGGGCAACC+CGG | + | tig0022001:38154-38173 | Msa1396120:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | tig0022001:38220-38239 | None:intergenic | 40.0% | |
| TCTTGTGTAAACACAGGGTA+AGG | - | tig0022001:38246-38265 | None:intergenic | 40.0% | |
| TTACCCTGTGTTTACACAAG+AGG | + | tig0022001:38245-38264 | Msa1396120:intron | 40.0% | |
| CAACCTCTTGTGTAAACACA+GGG | - | tig0022001:38251-38270 | None:intergenic | 40.0% | |
| ACAACCTCTTGTGTAAACAC+AGG | - | tig0022001:38252-38271 | None:intergenic | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | tig0022001:38256-38275 | Msa1396120:intron | 40.0% |
| ATCACTAACAAGGCCAAGAT+AGG | + | tig0022001:38489-38508 | Msa1396120:CDS | 40.0% | |
| TCACTAACAAGGCCAAGATA+GGG | + | tig0022001:38490-38509 | Msa1396120:CDS | 40.0% | |
| !! | TTGTTGTTTGGAAGGTCGAT+TGG | + | tig0022001:38904-38923 | Msa1396120:CDS | 40.0% |
| CTCCTGAAATATTTGAGGGC+TGG | + | tig0022001:36400-36419 | Msa1396120:CDS | 45.0% | |
| CTCCAGCCCTCAAATATTTC+AGG | - | tig0022001:36405-36424 | None:intergenic | 45.0% | |
| CTGAAATATTTGAGGGCTGG+AGG | + | tig0022001:36403-36422 | Msa1396120:CDS | 45.0% | |
| TTCAACACCTTCCTTCCAAC+TGG | + | tig0022001:36499-36518 | Msa1396120:CDS | 45.0% | |
| CTTATCTACTAACGCGAGCT+TGG | + | tig0022001:37238-37257 | Msa1396120:intron | 45.0% | |
| ACACGCCGGAAAACTGAAAT+AGG | - | tig0022001:37858-37877 | None:intergenic | 45.0% | |
| GGCGATATCGCAAGAAGTAA+TGG | - | tig0022001:37940-37959 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | tig0022001:38221-38240 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | tig0022001:38224-38243 | None:intergenic | 45.0% | |
| ! | CTCTGGGGAATTTGTCTTTG+TGG | + | tig0022001:38341-38360 | Msa1396120:intron | 45.0% |
| !! | AGAGTGGGTTGTTGACTTTG+TGG | + | tig0022001:38443-38462 | Msa1396120:CDS | 45.0% |
| CACTAACAAGGCCAAGATAG+GGG | + | tig0022001:38491-38510 | Msa1396120:CDS | 45.0% | |
| TCTCATATCCCCACTTGTTC+GGG | - | tig0022001:38767-38786 | None:intergenic | 45.0% | |
| CTCTCATATCCCCACTTGTT+CGG | - | tig0022001:38768-38787 | None:intergenic | 45.0% | |
| GATGAGATTCAAGAGGAGCT+GGG | - | tig0022001:38878-38897 | None:intergenic | 45.0% | |
| !! | GGAAGGTCGATTGGTGTTTT+AGG | + | tig0022001:38913-38932 | Msa1396120:CDS | 45.0% |
| TTTCCGGCGTGTGCAAGAAT+TGG | + | tig0022001:37866-37885 | Msa1396120:CDS | 50.0% | |
| TCAATTCCCCCTACCTCTGA+AGG | + | tig0022001:38135-38154 | Msa1396120:intron | 50.0% | |
| CAAGCTCAGTACCCCTATCT+TGG | - | tig0022001:38505-38524 | None:intergenic | 50.0% | |
| GTTGAGCAACCCGAACAAGT+GGG | + | tig0022001:38755-38774 | Msa1396120:CDS | 50.0% | |
| TTGAGCAACCCGAACAAGTG+GGG | + | tig0022001:38756-38775 | Msa1396120:CDS | 50.0% | |
| GGATGAGATTCAAGAGGAGC+TGG | - | tig0022001:38879-38898 | None:intergenic | 50.0% | |
| CCTCCAATTCTTGCACACGC+CGG | - | tig0022001:37872-37891 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | tig0022001:38180-38199 | Msa1396120:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | tig0022001:38181-38200 | Msa1396120:intron | 55.0% | |
| TCCAGGACTTGAACCCGTGA+AGG | + | tig0022001:38273-38292 | Msa1396120:intron | 55.0% | |
| ACCTTCACGGGTTCAAGTCC+TGG | - | tig0022001:38277-38296 | None:intergenic | 55.0% | |
| CGTTGAGCAACCCGAACAAG+TGG | + | tig0022001:38754-38773 | Msa1396120:CDS | 55.0% | |
| CCGGCGTGTGCAAGAATTGG+AGG | + | tig0022001:37869-37888 | Msa1396120:CDS | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | tig0022001:38176-38195 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | tig0022001:38192-38211 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | tig0022001:38193-38212 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | tig0022001:38192-38211 | Msa1396120:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | tig0022001:38193-38212 | Msa1396120:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | tig0022001:38208-38227 | None:intergenic | 60.0% |
| TGCGGGAGCTTCAGTGCACC+GGG | - | tig0022001:38175-38194 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | tig0022001:38186-38205 | Msa1396120:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | tig0022001:38187-38206 | Msa1396120:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | tig0022001:38191-38210 | Msa1396120:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | tig0022001:38206-38225 | Msa1396120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022001 | gene | 36301 | 38974 | 36301 | ID=Msa1396120;Name=Msa1396120 |
| tig0022001 | mRNA | 36301 | 38974 | 36301 | ID=Msa1396120-mRNA-1;Parent=Msa1396120;Name=Msa1396120-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0.33|0.25|4|0|304 |
| tig0022001 | exon | 36301 | 36520 | 36301 | ID=Msa1396120-mRNA-1:exon:15332;Parent=Msa1396120-mRNA-1 |
| tig0022001 | exon | 37770 | 37970 | 37770 | ID=Msa1396120-mRNA-1:exon:15333;Parent=Msa1396120-mRNA-1 |
| tig0022001 | exon | 38436 | 38596 | 38436 | ID=Msa1396120-mRNA-1:exon:15334;Parent=Msa1396120-mRNA-1 |
| tig0022001 | exon | 38642 | 38974 | 38642 | ID=Msa1396120-mRNA-1:exon:15335;Parent=Msa1396120-mRNA-1 |
| tig0022001 | CDS | 36301 | 36520 | 36301 | ID=Msa1396120-mRNA-1:cds;Parent=Msa1396120-mRNA-1 |
| tig0022001 | CDS | 37770 | 37970 | 37770 | ID=Msa1396120-mRNA-1:cds;Parent=Msa1396120-mRNA-1 |
| tig0022001 | CDS | 38436 | 38596 | 38436 | ID=Msa1396120-mRNA-1:cds;Parent=Msa1396120-mRNA-1 |
| tig0022001 | CDS | 38642 | 38974 | 38642 | ID=Msa1396120-mRNA-1:cds;Parent=Msa1396120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
