Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035800 | XP_013459511.1 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 8.90e-168 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035800 | sp|O48686|SNL3_ARATH | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.89e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0035800 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035800 | Msa1396170 | 0.951733 | 1.094004e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035800 | MtrunA17_Chr3g0093911 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 8.18e-172 | 485 |
| Msa0035800 | MtrunA17_Chr7g0252101 | 62.264 | 424 | 145 | 9 | 13 | 430 | 18 | 432 | 3.18e-170 | 484 |
| Msa0035800 | MtrunA17_Chr1g0207351 | 64.607 | 356 | 115 | 5 | 81 | 430 | 16 | 366 | 2.04e-150 | 431 |
| Msa0035800 | MtrunA17_Chr4g0075971 | 56.064 | 437 | 166 | 7 | 11 | 430 | 175 | 602 | 1.22e-139 | 412 |
| Msa0035800 | MtrunA17_Chr3g0077801 | 58.708 | 356 | 141 | 4 | 77 | 430 | 1 | 352 | 4.20e-132 | 384 |
| Msa0035800 | MtrunA17_Chr6g0488101 | 47.577 | 454 | 197 | 10 | 10 | 430 | 10 | 455 | 4.98e-125 | 370 |
| Msa0035800 | MtrunA17_Chr3g0077901 | 55.153 | 359 | 155 | 4 | 73 | 429 | 17 | 371 | 3.68e-124 | 364 |
| Msa0035800 | MtrunA17_Chr6g0488271 | 49.640 | 417 | 174 | 9 | 42 | 430 | 7 | 415 | 3.37e-121 | 358 |
| Msa0035800 | MtrunA17_Chr3g0077851 | 57.227 | 339 | 139 | 4 | 93 | 429 | 1 | 335 | 7.29e-121 | 355 |
| Msa0035800 | MtrunA17_Chr1g0209051 | 64.599 | 274 | 91 | 3 | 158 | 429 | 1 | 270 | 3.87e-118 | 345 |
| Msa0035800 | MtrunA17_Chr7g0243331 | 54.885 | 348 | 149 | 6 | 85 | 430 | 9 | 350 | 3.48e-112 | 333 |
| Msa0035800 | MtrunA17_Chr3g0112311 | 52.632 | 361 | 156 | 6 | 77 | 428 | 1 | 355 | 3.61e-111 | 331 |
| Msa0035800 | MtrunA17_Chr6g0452641 | 50.938 | 320 | 139 | 8 | 122 | 430 | 28 | 340 | 3.05e-82 | 256 |
| Msa0035800 | MtrunA17_Chr3g0122991 | 46.769 | 325 | 110 | 6 | 79 | 392 | 2 | 274 | 1.81e-79 | 247 |
| Msa0035800 | MtrunA17_Chr1g0202841 | 62.983 | 181 | 65 | 1 | 250 | 430 | 1 | 179 | 4.32e-72 | 224 |
| Msa0035800 | MtrunA17_Chr3g0123471 | 50.916 | 273 | 112 | 9 | 158 | 422 | 1 | 259 | 6.83e-69 | 219 |
| Msa0035800 | MtrunA17_Chr4g0075861 | 53.960 | 202 | 75 | 3 | 11 | 197 | 175 | 373 | 1.06e-50 | 175 |
| Msa0035800 | MtrunA17_Chr7g0243391 | 48.148 | 216 | 108 | 3 | 69 | 282 | 10 | 223 | 1.35e-50 | 171 |
| Msa0035800 | MtrunA17_Chr1g0196231 | 62.893 | 159 | 49 | 5 | 62 | 218 | 216 | 366 | 7.02e-49 | 170 |
| Msa0035800 | MtrunA17_Chr1g0206951 | 65.487 | 113 | 38 | 1 | 80 | 191 | 2 | 114 | 1.55e-40 | 140 |
| Msa0035800 | MtrunA17_Chr1g0187941 | 55.474 | 137 | 61 | 0 | 250 | 386 | 1 | 137 | 3.35e-40 | 140 |
| Msa0035800 | MtrunA17_Chr6g0486591 | 47.853 | 163 | 72 | 4 | 277 | 430 | 1 | 159 | 1.44e-35 | 129 |
| Msa0035800 | MtrunA17_Chr1g0209191 | 60.396 | 101 | 34 | 2 | 332 | 429 | 1 | 98 | 5.37e-34 | 122 |
| Msa0035800 | MtrunA17_Chr1g0196241 | 70.000 | 80 | 20 | 2 | 324 | 402 | 4 | 80 | 6.36e-30 | 111 |
| Msa0035800 | MtrunA17_Chr1g0209061 | 52.212 | 113 | 43 | 1 | 4 | 116 | 6 | 107 | 5.78e-28 | 106 |
| Msa0035800 | MtrunA17_Chr6g0459061 | 27.900 | 319 | 191 | 11 | 85 | 386 | 18 | 314 | 2.02e-22 | 98.2 |
| Msa0035800 | MtrunA17_Chr7g0238781 | 41.045 | 134 | 75 | 4 | 109 | 240 | 27 | 158 | 2.35e-18 | 82.0 |
| Msa0035800 | MtrunA17_Chr8g0364231 | 39.316 | 117 | 63 | 3 | 9 | 125 | 43 | 151 | 7.31e-15 | 77.0 |
| Msa0035800 | MtrunA17_Chr1g0206781 | 36.522 | 115 | 57 | 3 | 2 | 116 | 5 | 103 | 6.83e-14 | 68.2 |
| Msa0035800 | MtrunA17_Chr1g0209201 | 52.941 | 68 | 29 | 2 | 11 | 78 | 19 | 83 | 8.85e-14 | 68.6 |
| Msa0035800 | MtrunA17_Chr5g0415031 | 38.835 | 103 | 55 | 2 | 9 | 111 | 44 | 138 | 9.36e-13 | 70.5 |
| Msa0035800 | MtrunA17_Chr6g0452021 | 36.752 | 117 | 64 | 3 | 9 | 125 | 44 | 150 | 6.06e-12 | 67.4 |
| Msa0035800 | MtrunA17_Chr6g0452001 | 35.897 | 117 | 67 | 2 | 9 | 125 | 64 | 172 | 9.79e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035800 | AT1G24190.1 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.96e-14 | 75.5 |
| Msa0035800 | AT1G24190.2 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 4.13e-14 | 75.1 |
| Msa0035800 | AT1G24190.3 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 4.40e-14 | 75.1 |
| Msa0035800 | AT3G01320.1 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.43e-13 | 72.4 |
| Msa0035800 | AT3G01320.2 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.67e-13 | 72.4 |
| Msa0035800 | AT5G15020.2 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.66e-13 | 70.9 |
| Msa0035800 | AT5G15020.1 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.68e-13 | 70.9 |
| Msa0035800 | AT1G59890.1 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.74e-12 | 70.1 |
| Msa0035800 | AT1G59890.4 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.79e-12 | 70.1 |
| Msa0035800 | AT1G59890.2 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.80e-12 | 70.1 |
| Msa0035800 | AT1G59890.3 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.83e-12 | 70.1 |
| Msa0035800 | AT5G15025.1 | 44.595 | 74 | 39 | 1 | 9 | 82 | 48 | 119 | 9.63e-12 | 62.4 |
| Msa0035800 | AT1G10450.2 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.73e-11 | 66.2 |
| Msa0035800 | AT1G10450.1 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.73e-11 | 66.2 |
| Msa0035800 | AT1G10450.3 | 47.674 | 86 | 41 | 2 | 9 | 92 | 85 | 168 | 2.76e-11 | 66.2 |
| Msa0035800 | AT1G70060.2 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.76e-11 | 64.7 |
| Msa0035800 | AT1G70060.1 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.76e-11 | 64.7 |
Find 100 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACTCGATTTATTTCT+TGG | 0.092423 | 1_1:-64160296 | Msa0035800:five_prime_UTR |
| ACCTTCTTTAATCTCGTAAA+TGG | 0.163720 | 1_1:+64158847 | None:intergenic |
| AGGACATACAGATTTAATTT+TGG | 0.178602 | 1_1:-64160046 | Msa0035800:CDS |
| CCTTTACTTCTTCAAATTTC+AGG | 0.195615 | 1_1:-64159024 | Msa0035800:CDS |
| CTCTCATATCCCCACTTGTT+TGG | 0.217984 | 1_1:+64158328 | None:intergenic |
| ACTTATCCAACAATGGAAAA+TGG | 0.296275 | 1_1:-64158676 | Msa0035800:CDS |
| GTAACCAACTTAAGGAAAAT+AGG | 0.297033 | 1_1:+64158517 | None:intergenic |
| GATGACCTATTTCAGTTTGC+TGG | 0.310501 | 1_1:-64159111 | Msa0035800:CDS |
| GTCATCAAAATCTAGTGTTT+TGG | 0.312349 | 1_1:+64159128 | None:intergenic |
| TCTCATATCCCCACTTGTTT+GGG | 0.317017 | 1_1:+64158329 | None:intergenic |
| TTCAAGTCTGACATAATTCA+TGG | 0.319194 | 1_1:+64158420 | None:intergenic |
| TGTCAATAATTTGACTAGAA+TGG | 0.333595 | 1_1:-64158063 | Msa0035800:three_prime_UTR |
| AATCGAGTGAAGGAGGATTA+AGG | 0.338588 | 1_1:+64160306 | None:intergenic |
| ACAATATGTTGCGTATATTC+AGG | 0.339511 | 1_1:-64158274 | Msa0035800:CDS |
| CTCTGAGGAATTTGTCTTGG+TGG | 0.339559 | 1_1:-64158755 | Msa0035800:CDS |
| GTCAATAATTTGACTAGAAT+GGG | 0.344400 | 1_1:-64158062 | Msa0035800:three_prime_UTR |
| AGAGCCAAGAGACTGCTTAA+AGG | 0.355381 | 1_1:-64160066 | Msa0035800:CDS |
| GAGATACCCCAGACCGATTC+GGG | 0.356763 | 1_1:+64160203 | None:intergenic |
| TTGGTCTAGTATGCTAATAA+AGG | 0.367363 | 1_1:+64158981 | None:intergenic |
| GTACACAATTGTTATTTCCT+TGG | 0.372361 | 1_1:+64158459 | None:intergenic |
| ATACGCGCCTTGCTTGCTTT+TGG | 0.373631 | 1_1:-64158784 | Msa0035800:CDS |
| AGAGGATATTCATGAGGATC+TGG | 0.374895 | 1_1:+64158217 | None:intergenic |
| AGAGAAATATGAACTTCCTT+TGG | 0.379216 | 1_1:-64159169 | Msa0035800:CDS |
| ACACGCCAGCAAACTGAAAT+AGG | 0.383496 | 1_1:+64159106 | None:intergenic |
| TTGTTAAAATATTTGAGGTC+TGG | 0.397164 | 1_1:-64160123 | Msa0035800:CDS |
| TAAAATTGTTAAAATATTTG+AGG | 0.399386 | 1_1:-64160128 | Msa0035800:CDS |
| TCTTGCAACTGCGGGTTTGA+AGG | 0.402448 | 1_1:-64158197 | Msa0035800:CDS |
| GAAGAACTCCCGAATCGGTC+TGG | 0.403343 | 1_1:-64160211 | Msa0035800:CDS |
| CTGCGGGTTTGAAGGTTGAT+TGG | 0.408942 | 1_1:-64158189 | Msa0035800:CDS |
| TTTGAAGAAGTAAAGGTCCT+TGG | 0.419354 | 1_1:+64159031 | None:intergenic |
| CATCACAAGTAACCAACTTA+AGG | 0.431314 | 1_1:+64158509 | None:intergenic |
| TGAGATACCCCAGACCGATT+CGG | 0.439020 | 1_1:+64160202 | None:intergenic |
| TTGCTGGCGTGTGCAAGAAT+TGG | 0.439926 | 1_1:-64159095 | Msa0035800:CDS |
| TATGTCAGACTTGAAACTTT+GGG | 0.450616 | 1_1:-64158412 | Msa0035800:CDS |
| TTGAAGAAGTAAAGGTCCTT+GGG | 0.450950 | 1_1:+64159032 | None:intergenic |
| GTTGTGATACACAGGGAAAA+AGG | 0.453560 | 1_1:-64159205 | Msa0035800:intron |
| AAGAACTCCCGAATCGGTCT+GGG | 0.457288 | 1_1:-64160210 | Msa0035800:CDS |
| TCCATTTACGAGATTAAAGA+AGG | 0.460681 | 1_1:-64158848 | Msa0035800:CDS |
| GCATTTGCCAAAAGCAAGCA+AGG | 0.466413 | 1_1:+64158777 | None:intergenic |
| CAATATGTTGCGTATATTCA+GGG | 0.478833 | 1_1:-64158273 | Msa0035800:CDS |
| TTCAACGCCTTCCTCCCAAC+TGG | 0.479823 | 1_1:-64160021 | Msa0035800:intron |
| ATCAATCTCGAAATTGTGGT+TGG | 0.483573 | 1_1:-64158702 | Msa0035800:CDS |
| GTTACTAACAAGGTTAACAT+AGG | 0.489348 | 1_1:-64158607 | Msa0035800:CDS |
| GATTCATAAACTACAGAAAA+GGG | 0.491421 | 1_1:+64160414 | None:intergenic |
| AAGGAAAATAGGAATTGTTA+CGG | 0.492083 | 1_1:+64158528 | None:intergenic |
| TTATGTCAGACTTGAAACTT+TGG | 0.492268 | 1_1:-64158413 | Msa0035800:CDS |
| CCTGAAATTTGAAGAAGTAA+AGG | 0.496936 | 1_1:+64159024 | None:intergenic |
| TGAATATACGCAACATATTG+TGG | 0.500844 | 1_1:+64158276 | None:intergenic |
| TCAATCTCGAAATTGTGGTT+GGG | 0.502080 | 1_1:-64158701 | Msa0035800:CDS |
| CAAATCAGTTCAATAATCAA+TGG | 0.506442 | 1_1:-64160335 | Msa0035800:five_prime_UTR |
| AGTAGTTTATTTATTGTCCA+AGG | 0.507122 | 1_1:-64158476 | Msa0035800:CDS |
| ATGCTCTGAGGAATTTGTCT+TGG | 0.509803 | 1_1:-64158758 | Msa0035800:CDS |
| ATGTCCTTTAAGCAGTCTCT+TGG | 0.511508 | 1_1:+64160062 | None:intergenic |
| CTGGCGTGTGCAAGAATTGG+AGG | 0.514025 | 1_1:-64159092 | Msa0035800:CDS |
| GAATATCCTCTTGCAACTGC+GGG | 0.515431 | 1_1:-64158205 | Msa0035800:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | 1_1:-64158706 | Msa0035800:CDS |
| CGATTCATAAACTACAGAAA+AGG | 0.524691 | 1_1:+64160413 | None:intergenic |
| TTACTAACAAGGTTAACATA+GGG | 0.524806 | 1_1:-64158606 | Msa0035800:CDS |
| TTAAAATATTTGAGGTCTGG+AGG | 0.527038 | 1_1:-64160120 | Msa0035800:CDS |
| TTGAACAATTCAGCGAGCAG+AGG | 0.528085 | 1_1:+64160355 | None:intergenic |
| AAAGTAGTAACTAACCAGTT+GGG | 0.541355 | 1_1:+64160007 | None:intergenic |
| TGAAGAAGCGTTAACTTCAG+AGG | 0.542973 | 1_1:+64158810 | None:intergenic |
| AAGATGAAGAACTCCCGAAT+CGG | 0.552281 | 1_1:-64160216 | Msa0035800:CDS |
| GAAGCGTTAACTTCAGAGGA+AGG | 0.556189 | 1_1:+64158814 | None:intergenic |
| AGCGTTAACTTCAGAGGAAG+GGG | 0.556461 | 1_1:+64158816 | None:intergenic |
| TGAATATCCTCTTGCAACTG+CGG | 0.565936 | 1_1:-64158206 | Msa0035800:CDS |
| GAGGATATTCATGAGGATCT+GGG | 0.567810 | 1_1:+64158218 | None:intergenic |
| TGTATCATAATTGAATGTGT+TGG | 0.567872 | 1_1:-64157957 | Msa0035800:three_prime_UTR |
| TGAACAATTCAGCGAGCAGA+GGG | 0.575230 | 1_1:+64160356 | None:intergenic |
| AGAAATAAATCGAGTGAAGG+AGG | 0.577568 | 1_1:+64160299 | None:intergenic |
| AACAATGGAAAATGGAGAGA+GGG | 0.577776 | 1_1:-64158668 | Msa0035800:CDS |
| TAACTAACCAGTTGGGAGGA+AGG | 0.577921 | 1_1:+64160014 | None:intergenic |
| TTCAAACCCGCAGTTGCAAG+AGG | 0.581215 | 1_1:+64158199 | None:intergenic |
| AAGGTTAACATAGGGGTACT+CGG | 0.582340 | 1_1:-64158598 | Msa0035800:CDS |
| AACTACAGAAAAGGGAACAA+AGG | 0.590578 | 1_1:+64160422 | None:intergenic |
| AATATATGTTGTTACTAACA+AGG | 0.592186 | 1_1:-64158617 | Msa0035800:CDS |
| AAGCGTTAACTTCAGAGGAA+GGG | 0.593674 | 1_1:+64158815 | None:intergenic |
| CCAAGAAATAAATCGAGTGA+AGG | 0.596858 | 1_1:+64160296 | None:intergenic |
| TTGGGTTACTTATCCAACAA+TGG | 0.601052 | 1_1:-64158683 | Msa0035800:CDS |
| GCCTATGTTACGTATTCTAG+CGG | 0.612849 | 1_1:-64158916 | Msa0035800:CDS |
| TCCGCTAGAATACGTAACAT+AGG | 0.616925 | 1_1:+64158915 | None:intergenic |
| AATCGGTCTGGGGTATCTCA+AGG | 0.617645 | 1_1:-64160199 | Msa0035800:CDS |
| CATTGATCAACCCAAACAAG+TGG | 0.618149 | 1_1:-64158339 | Msa0035800:CDS |
| CAACAATGGAAAATGGAGAG+AGG | 0.619055 | 1_1:-64158669 | Msa0035800:CDS |
| GAAAATAGGAATTGTTACGG+AGG | 0.623593 | 1_1:+64158531 | None:intergenic |
| ACGTAACATAGGCATGGCGG+AGG | 0.626225 | 1_1:+64158926 | None:intergenic |
| ATTGATCAACCCAAACAAGT+GGG | 0.630697 | 1_1:-64158338 | Msa0035800:CDS |
| TAGAATACGTAACATAGGCA+TGG | 0.637978 | 1_1:+64158920 | None:intergenic |
| GAACAACAAAACTCGACAGA+GGG | 0.644692 | 1_1:+64160444 | None:intergenic |
| AAAATAGGAATTGTTACGGA+GGG | 0.644724 | 1_1:+64158532 | None:intergenic |
| TACTAACAAGGTTAACATAG+GGG | 0.649187 | 1_1:-64158605 | Msa0035800:CDS |
| GTGATATCAAGCACATCCAA+AGG | 0.656948 | 1_1:+64159153 | None:intergenic |
| AATATGTTGCGTATATTCAG+GGG | 0.657333 | 1_1:-64158272 | Msa0035800:CDS |
| TGGCGTGTGCAAGAATTGGA+GGG | 0.662506 | 1_1:-64159091 | Msa0035800:CDS |
| GTAGTAACTAACCAGTTGGG+AGG | 0.669294 | 1_1:+64160010 | None:intergenic |
| TTGATCAACCCAAACAAGTG+GGG | 0.674855 | 1_1:-64158337 | Msa0035800:CDS |
| GTTGCAAGAGGATATTCATG+AGG | 0.689195 | 1_1:+64158211 | None:intergenic |
| GGAACAACAAAACTCGACAG+AGG | 0.702235 | 1_1:+64160443 | None:intergenic |
| AGAACTCCCGAATCGGTCTG+GGG | 0.703093 | 1_1:-64160209 | Msa0035800:CDS |
| AATACGTAACATAGGCATGG+CGG | 0.750285 | 1_1:+64158923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATTATATTCAA+AGG | + | chr1_1:64158276-64158295 | None:intergenic | 10.0% |
| !! | TAAAATTGTTAAAATATTTG+AGG | - | chr1_1:64158309-64158328 | Msa0035800:CDS | 10.0% |
| !!! | TTGAAATATAAGATATTTTA+AGG | + | chr1_1:64159167-64159186 | None:intergenic | 10.0% |
| !! | ATTATTGACAAAAAAAATAT+GGG | + | chr1_1:64160364-64160383 | None:intergenic | 10.0% |
| !! | AATTATTGACAAAAAAAATA+TGG | + | chr1_1:64160365-64160384 | None:intergenic | 10.0% |
| !!! | TTGGTTTTATTATTTTGAAT+TGG | - | chr1_1:64158160-64158179 | Msa0035800:CDS | 15.0% |
| !! | TTTAATAAAATCATGGAAAA+CGG | + | chr1_1:64159140-64159159 | None:intergenic | 15.0% |
| !! | AGGTTTATTTAATAAAATCA+TGG | + | chr1_1:64159147-64159166 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTATTACTCGTT+TGG | - | chr1_1:64158490-64158509 | Msa0035800:CDS | 20.0% |
| !!! | CTTTTTTTTATTACTCGTTT+GGG | - | chr1_1:64158491-64158510 | Msa0035800:CDS | 20.0% |
| !! | TAAAACCTATATTTCTTTGT+AGG | - | chr1_1:64159073-64159092 | Msa0035800:CDS | 20.0% |
| !! | AATAACCTACAAAGAAATAT+AGG | + | chr1_1:64159081-64159100 | None:intergenic | 20.0% |
| !! | AATATATGTTGTTACTAACA+AGG | - | chr1_1:64159820-64159839 | Msa0035800:intron | 20.0% |
| ! | GATTCATAAACTACAGAAAA+GGG | + | chr1_1:64158026-64158045 | None:intergenic | 25.0% |
| !! | CTTTTCTGTAGTTTATGAAT+CGG | - | chr1_1:64158025-64158044 | Msa0035800:three_prime_UTR | 25.0% |
| !! | TTTTCTGTAGTTTATGAATC+GGG | - | chr1_1:64158026-64158045 | Msa0035800:three_prime_UTR | 25.0% |
| ! | CAAATCAGTTCAATAATCAA+TGG | - | chr1_1:64158102-64158121 | Msa0035800:three_prime_UTR | 25.0% |
| !! | TTGTTAAAATATTTGAGGTC+TGG | - | chr1_1:64158314-64158333 | Msa0035800:CDS | 25.0% |
| !!! | AGGACATACAGATTTAATTT+TGG | - | chr1_1:64158391-64158410 | Msa0035800:CDS | 25.0% |
| !!! | GGACATACAGATTTAATTTT+GGG | - | chr1_1:64158392-64158411 | Msa0035800:CDS | 25.0% |
| ! | AGTTAATGCAATGATTGTTA+AGG | - | chr1_1:64158598-64158617 | Msa0035800:CDS | 25.0% |
| ! | AATCATACTAAATGCTTGTT+TGG | - | chr1_1:64158657-64158676 | Msa0035800:CDS | 25.0% |
| ! | GTTTAAATGGAAGACATTTA+GGG | + | chr1_1:64158936-64158955 | None:intergenic | 25.0% |
| ! | TGTTTAAATGGAAGACATTT+AGG | + | chr1_1:64158937-64158956 | None:intergenic | 25.0% |
| !!! | AGTTTACTGGAGAAATTTTT+TGG | - | chr1_1:64159379-64159398 | Msa0035800:intron | 25.0% |
| ! | TTACTAACAAGGTTAACATA+GGG | - | chr1_1:64159831-64159850 | Msa0035800:intron | 25.0% |
| ! | AAGGAAAATAGGAATTGTTA+CGG | + | chr1_1:64159912-64159931 | None:intergenic | 25.0% |
| !! | AATTCCTATTTTCCTTAAGT+TGG | - | chr1_1:64159916-64159935 | Msa0035800:intron | 25.0% |
| ! | AGTAGTTTATTTATTGTCCA+AGG | - | chr1_1:64159961-64159980 | Msa0035800:intron | 25.0% |
| !! | AATGCATAACAGTTTTTCTT+CGG | + | chr1_1:64160082-64160101 | None:intergenic | 25.0% |
| !!! | TTTTAGGCATCTAAAATATG+AGG | - | chr1_1:64160273-64160292 | Msa0035800:five_prime_UTR | 25.0% |
| ! | TGTCAATAATTTGACTAGAA+TGG | - | chr1_1:64160374-64160393 | Msa0035800:five_prime_UTR | 25.0% |
| ! | GTCAATAATTTGACTAGAAT+GGG | - | chr1_1:64160375-64160394 | Msa0035800:five_prime_UTR | 25.0% |
| ! | TGTATCATAATTGAATGTGT+TGG | - | chr1_1:64160480-64160499 | Msa0035800:five_prime_UTR | 25.0% |
| CGATTCATAAACTACAGAAA+AGG | + | chr1_1:64158027-64158046 | None:intergenic | 30.0% | |
| ! | TTAAAATATTTGAGGTCTGG+AGG | - | chr1_1:64158317-64158336 | Msa0035800:CDS | 30.0% |
| AAAGTAGTAACTAACCAGTT+GGG | + | chr1_1:64158433-64158452 | None:intergenic | 30.0% | |
| AAAAGTAGTAACTAACCAGT+TGG | + | chr1_1:64158434-64158453 | None:intergenic | 30.0% | |
| TACTAAATGCTTGTTTGGAT+TGG | - | chr1_1:64158662-64158681 | Msa0035800:CDS | 30.0% | |
| ! | ACATGTTTTGTAAGACTGTT+TGG | - | chr1_1:64158706-64158725 | Msa0035800:CDS | 30.0% |
| ATAAGCTGTATGAGCTATAT+TGG | + | chr1_1:64158796-64158815 | None:intergenic | 30.0% | |
| GGATTCAAGAGTTGTTTAAA+TGG | + | chr1_1:64158949-64158968 | None:intergenic | 30.0% | |
| AACAACTCTTGAATCCATAT+TGG | - | chr1_1:64158953-64158972 | Msa0035800:CDS | 30.0% | |
| ACAGTATCTCAATACAATGA+AGG | - | chr1_1:64159005-64159024 | Msa0035800:CDS | 30.0% | |
| CAGTATCTCAATACAATGAA+GGG | - | chr1_1:64159006-64159025 | Msa0035800:CDS | 30.0% | |
| AGAGAAATATGAACTTCCTT+TGG | - | chr1_1:64159268-64159287 | Msa0035800:intron | 30.0% | |
| ! | GTCATCAAAATCTAGTGTTT+TGG | + | chr1_1:64159312-64159331 | None:intergenic | 30.0% |
| !!! | AGAAATTTTTTGGTATCCCA+AGG | - | chr1_1:64159389-64159408 | Msa0035800:intron | 30.0% |
| CCTGAAATTTGAAGAAGTAA+AGG | + | chr1_1:64159416-64159435 | None:intergenic | 30.0% | |
| CCTTTACTTCTTCAAATTTC+AGG | - | chr1_1:64159413-64159432 | Msa0035800:intron | 30.0% | |
| TTGGTCTAGTATGCTAATAA+AGG | + | chr1_1:64159459-64159478 | None:intergenic | 30.0% | |
| ! | AGACCAAAAAGTATATCACT+TGG | - | chr1_1:64159472-64159491 | Msa0035800:intron | 30.0% |
| ! | TCTCCAAGTGATATACTTTT+TGG | + | chr1_1:64159478-64159497 | None:intergenic | 30.0% |
| TCCATTTACGAGATTAAAGA+AGG | - | chr1_1:64159589-64159608 | Msa0035800:intron | 30.0% | |
| ACCTTCTTTAATCTCGTAAA+TGG | + | chr1_1:64159593-64159612 | None:intergenic | 30.0% | |
| ACTTATCCAACAATGGAAAA+TGG | - | chr1_1:64159761-64159780 | Msa0035800:intron | 30.0% | |
| GTTACTAACAAGGTTAACAT+AGG | - | chr1_1:64159830-64159849 | Msa0035800:intron | 30.0% | |
| TACTAACAAGGTTAACATAG+GGG | - | chr1_1:64159832-64159851 | Msa0035800:intron | 30.0% | |
| AAAATAGGAATTGTTACGGA+GGG | + | chr1_1:64159908-64159927 | None:intergenic | 30.0% | |
| GTAACCAACTTAAGGAAAAT+AGG | + | chr1_1:64159923-64159942 | None:intergenic | 30.0% | |
| !! | GTACACAATTGTTATTTCCT+TGG | + | chr1_1:64159981-64160000 | None:intergenic | 30.0% |
| TTCAAGTCTGACATAATTCA+TGG | + | chr1_1:64160020-64160039 | None:intergenic | 30.0% | |
| TTATGTCAGACTTGAAACTT+TGG | - | chr1_1:64160024-64160043 | Msa0035800:CDS | 30.0% | |
| TATGTCAGACTTGAAACTTT+GGG | - | chr1_1:64160025-64160044 | Msa0035800:CDS | 30.0% | |
| ! | GCATTATTTTCTACTTCGAT+TGG | - | chr1_1:64160055-64160074 | Msa0035800:CDS | 30.0% |
| TGAATATACGCAACATATTG+TGG | + | chr1_1:64160164-64160183 | None:intergenic | 30.0% | |
| ACAATATGTTGCGTATATTC+AGG | - | chr1_1:64160163-64160182 | Msa0035800:CDS | 30.0% | |
| CAATATGTTGCGTATATTCA+GGG | - | chr1_1:64160164-64160183 | Msa0035800:CDS | 30.0% | |
| AATATGTTGCGTATATTCAG+GGG | - | chr1_1:64160165-64160184 | Msa0035800:CDS | 30.0% | |
| !!! | ATTTTACAGTGTGTTACTTG+TGG | - | chr1_1:64160326-64160345 | Msa0035800:five_prime_UTR | 30.0% |
| AGAATGGGAAAAACTTGTAA+TGG | - | chr1_1:64160390-64160409 | Msa0035800:five_prime_UTR | 30.0% | |
| AACTACAGAAAAGGGAACAA+AGG | + | chr1_1:64158018-64158037 | None:intergenic | 35.0% | |
| AGAAATAAATCGAGTGAAGG+AGG | + | chr1_1:64158141-64158160 | None:intergenic | 35.0% | |
| CCAAGAAATAAATCGAGTGA+AGG | + | chr1_1:64158144-64158163 | None:intergenic | 35.0% | |
| ! | CCTTCACTCGATTTATTTCT+TGG | - | chr1_1:64158141-64158160 | Msa0035800:CDS | 35.0% |
| TGAACATATGTGAAGTGCAA+TGG | + | chr1_1:64158458-64158477 | None:intergenic | 35.0% | |
| GTACTTAGTAGGTTAAAGCT+TGG | - | chr1_1:64158536-64158555 | Msa0035800:CDS | 35.0% | |
| TATGCAAGCTTATACACAAG+CGG | - | chr1_1:64158885-64158904 | Msa0035800:CDS | 35.0% | |
| ATCACAACAATGACAGTGTT+AGG | + | chr1_1:64159220-64159239 | None:intergenic | 35.0% | |
| TGTCATTGTTGTGATACACA+GGG | - | chr1_1:64159225-64159244 | Msa0035800:intron | 35.0% | |
| ! | GGGCTTTTCATAAAGTTTAC+TGG | - | chr1_1:64159366-64159385 | Msa0035800:intron | 35.0% |
| TTGAAGAAGTAAAGGTCCTT+GGG | + | chr1_1:64159408-64159427 | None:intergenic | 35.0% | |
| TTTGAAGAAGTAAAGGTCCT+TGG | + | chr1_1:64159409-64159428 | None:intergenic | 35.0% | |
| TAGAATACGTAACATAGGCA+TGG | + | chr1_1:64159520-64159539 | None:intergenic | 35.0% | |
| GTCTATCAATCTCGAAATTG+TGG | - | chr1_1:64159731-64159750 | Msa0035800:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | - | chr1_1:64159735-64159754 | Msa0035800:intron | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | - | chr1_1:64159736-64159755 | Msa0035800:intron | 35.0% | |
| TTGGGTTACTTATCCAACAA+TGG | - | chr1_1:64159754-64159773 | Msa0035800:intron | 35.0% | |
| AACAATGGAAAATGGAGAGA+GGG | - | chr1_1:64159769-64159788 | Msa0035800:intron | 35.0% | |
| GAAAATAGGAATTGTTACGG+AGG | + | chr1_1:64159909-64159928 | None:intergenic | 35.0% | |
| CATCACAAGTAACCAACTTA+AGG | + | chr1_1:64159931-64159950 | None:intergenic | 35.0% | |
| ATTGATCAACCCAAACAAGT+GGG | - | chr1_1:64160099-64160118 | Msa0035800:CDS | 35.0% | |
| !! | TGAAGGTTGATTGGTGTTTT+AGG | - | chr1_1:64160257-64160276 | Msa0035800:five_prime_UTR | 35.0% |
| GAACAACAAAACTCGACAGA+GGG | + | chr1_1:64157996-64158015 | None:intergenic | 40.0% | |
| AATCGAGTGAAGGAGGATTA+AGG | + | chr1_1:64158134-64158153 | None:intergenic | 40.0% | |
| AAGATGAAGAACTCCCGAAT+CGG | - | chr1_1:64158221-64158240 | Msa0035800:CDS | 40.0% | |
| ATGTCCTTTAAGCAGTCTCT+TGG | + | chr1_1:64158378-64158397 | None:intergenic | 40.0% | |
| TACTAAGTACTAACCGTGGT+CGG | + | chr1_1:64158526-64158545 | None:intergenic | 40.0% | |
| AACCTACTAAGTACTAACCG+TGG | + | chr1_1:64158530-64158549 | None:intergenic | 40.0% | |
| ! | GAAGACATTTAGGGCATGTT+TGG | + | chr1_1:64158927-64158946 | None:intergenic | 40.0% |
| !! | GCTCTGGAACTATACCAATA+TGG | + | chr1_1:64158970-64158989 | None:intergenic | 40.0% |
| !! | TCAAATAGCTTCTGAAGCTC+TGG | + | chr1_1:64158986-64159005 | None:intergenic | 40.0% |
| CTGTCATTGTTGTGATACAC+AGG | - | chr1_1:64159224-64159243 | Msa0035800:intron | 40.0% | |
| GTTGTGATACACAGGGAAAA+AGG | - | chr1_1:64159232-64159251 | Msa0035800:intron | 40.0% | |
| GTGATATCAAGCACATCCAA+AGG | + | chr1_1:64159287-64159306 | None:intergenic | 40.0% | |
| GATGACCTATTTCAGTTTGC+TGG | - | chr1_1:64159326-64159345 | Msa0035800:intron | 40.0% | |
| AATACGTAACATAGGCATGG+CGG | + | chr1_1:64159517-64159536 | None:intergenic | 40.0% | |
| GCCTATGTTACGTATTCTAG+CGG | - | chr1_1:64159521-64159540 | Msa0035800:intron | 40.0% | |
| TCCGCTAGAATACGTAACAT+AGG | + | chr1_1:64159525-64159544 | None:intergenic | 40.0% | |
| AAGCGTTAACTTCAGAGGAA+GGG | + | chr1_1:64159625-64159644 | None:intergenic | 40.0% | |
| !! | TGAAGAAGCGTTAACTTCAG+AGG | + | chr1_1:64159630-64159649 | None:intergenic | 40.0% |
| !! | ATGCTCTGAGGAATTTGTCT+TGG | - | chr1_1:64159679-64159698 | Msa0035800:intron | 40.0% |
| ! | CTCTCTCCATTTTCCATTGT+TGG | + | chr1_1:64159770-64159789 | None:intergenic | 40.0% |
| CAACAATGGAAAATGGAGAG+AGG | - | chr1_1:64159768-64159787 | Msa0035800:intron | 40.0% | |
| !! | AAGGTTAACATAGGGGTACT+CGG | - | chr1_1:64159839-64159858 | Msa0035800:intron | 40.0% |
| CATTGATCAACCCAAACAAG+TGG | - | chr1_1:64160098-64160117 | Msa0035800:CDS | 40.0% | |
| TTGATCAACCCAAACAAGTG+GGG | - | chr1_1:64160100-64160119 | Msa0035800:CDS | 40.0% | |
| TCTCATATCCCCACTTGTTT+GGG | + | chr1_1:64160111-64160130 | None:intergenic | 40.0% | |
| GAGGATATTCATGAGGATCT+GGG | + | chr1_1:64160222-64160241 | None:intergenic | 40.0% | |
| AGAGGATATTCATGAGGATC+TGG | + | chr1_1:64160223-64160242 | None:intergenic | 40.0% | |
| GTTGCAAGAGGATATTCATG+AGG | + | chr1_1:64160229-64160248 | None:intergenic | 40.0% | |
| TGAATATCCTCTTGCAACTG+CGG | - | chr1_1:64160231-64160250 | Msa0035800:exon | 40.0% | |
| GGAACAACAAAACTCGACAG+AGG | + | chr1_1:64157997-64158016 | None:intergenic | 45.0% | |
| TGAACAATTCAGCGAGCAGA+GGG | + | chr1_1:64158084-64158103 | None:intergenic | 45.0% | |
| TTGAACAATTCAGCGAGCAG+AGG | + | chr1_1:64158085-64158104 | None:intergenic | 45.0% | |
| AGAGCCAAGAGACTGCTTAA+AGG | - | chr1_1:64158371-64158390 | Msa0035800:CDS | 45.0% | |
| TAACTAACCAGTTGGGAGGA+AGG | + | chr1_1:64158426-64158445 | None:intergenic | 45.0% | |
| GTAGTAACTAACCAGTTGGG+AGG | + | chr1_1:64158430-64158449 | None:intergenic | 45.0% | |
| GACCACGGTTAGTACTTAGT+AGG | - | chr1_1:64158525-64158544 | Msa0035800:CDS | 45.0% | |
| CACAGGGAAAAAGGTGAAGA+AGG | - | chr1_1:64159241-64159260 | Msa0035800:intron | 45.0% | |
| ACACGCCAGCAAACTGAAAT+AGG | + | chr1_1:64159334-64159353 | None:intergenic | 45.0% | |
| AGCGTTAACTTCAGAGGAAG+GGG | + | chr1_1:64159624-64159643 | None:intergenic | 45.0% | |
| ! | GAAGCGTTAACTTCAGAGGA+AGG | + | chr1_1:64159626-64159645 | None:intergenic | 45.0% |
| GCATTTGCCAAAAGCAAGCA+AGG | + | chr1_1:64159663-64159682 | None:intergenic | 45.0% | |
| ! | TGCTTTTGGCAAATGCTCTG+AGG | - | chr1_1:64159667-64159686 | Msa0035800:intron | 45.0% |
| ! | CTCTGAGGAATTTGTCTTGG+TGG | - | chr1_1:64159682-64159701 | Msa0035800:intron | 45.0% |
| CTCTCATATCCCCACTTGTT+TGG | + | chr1_1:64160112-64160131 | None:intergenic | 45.0% | |
| GAATATCCTCTTGCAACTGC+GGG | - | chr1_1:64160232-64160251 | Msa0035800:exon | 45.0% | |
| AAGAACTCCCGAATCGGTCT+GGG | - | chr1_1:64158227-64158246 | Msa0035800:CDS | 50.0% | |
| TGAGATACCCCAGACCGATT+CGG | + | chr1_1:64158238-64158257 | None:intergenic | 50.0% | |
| ! | AATCGGTCTGGGGTATCTCA+AGG | - | chr1_1:64158238-64158257 | Msa0035800:CDS | 50.0% |
| TTGCTGGCGTGTGCAAGAAT+TGG | - | chr1_1:64159342-64159361 | Msa0035800:intron | 50.0% | |
| TGGCGTGTGCAAGAATTGGA+GGG | - | chr1_1:64159346-64159365 | Msa0035800:intron | 50.0% | |
| ! | ATACGCGCCTTGCTTGCTTT+TGG | - | chr1_1:64159653-64159672 | Msa0035800:intron | 50.0% |
| TTCAAACCCGCAGTTGCAAG+AGG | + | chr1_1:64160241-64160260 | None:intergenic | 50.0% | |
| TCTTGCAACTGCGGGTTTGA+AGG | - | chr1_1:64160240-64160259 | Msa0035800:exon | 50.0% | |
| ! | CTGCGGGTTTGAAGGTTGAT+TGG | - | chr1_1:64160248-64160267 | Msa0035800:five_prime_UTR | 50.0% |
| GAAGAACTCCCGAATCGGTC+TGG | - | chr1_1:64158226-64158245 | Msa0035800:CDS | 55.0% | |
| AGAACTCCCGAATCGGTCTG+GGG | - | chr1_1:64158228-64158247 | Msa0035800:CDS | 55.0% | |
| ! | GAGATACCCCAGACCGATTC+GGG | + | chr1_1:64158237-64158256 | None:intergenic | 55.0% |
| TTCAACGCCTTCCTCCCAAC+TGG | - | chr1_1:64158416-64158435 | Msa0035800:CDS | 55.0% | |
| TGGGCTATGTAAGCCGACCA+CGG | - | chr1_1:64158510-64158529 | Msa0035800:CDS | 55.0% | |
| CTGGCGTGTGCAAGAATTGG+AGG | - | chr1_1:64159345-64159364 | Msa0035800:intron | 55.0% | |
| ACGTAACATAGGCATGGCGG+AGG | + | chr1_1:64159514-64159533 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64157955 | 64160504 | 64157955 | ID=Msa0035800;Name=Msa0035800 |
| chr1_1 | mRNA | 64157955 | 64160504 | 64157955 | ID=Msa0035800-mRNA-1;Parent=Msa0035800;Name=Msa0035800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=263|1|1|1|1|1|2|186|430 |
| chr1_1 | exon | 64157955 | 64159213 | 64157955 | ID=Msa0035800-mRNA-1:exon:20499;Parent=Msa0035800-mRNA-1 |
| chr1_1 | exon | 64160022 | 64160504 | 64160022 | ID=Msa0035800-mRNA-1:exon:20498;Parent=Msa0035800-mRNA-1 |
| chr1_1 | five_prime_UTR | 64160242 | 64160504 | 64160242 | ID=Msa0035800-mRNA-1:five_prime_utr;Parent=Msa0035800-mRNA-1 |
| chr1_1 | CDS | 64160022 | 64160241 | 64160022 | ID=Msa0035800-mRNA-1:cds;Parent=Msa0035800-mRNA-1 |
| chr1_1 | CDS | 64158141 | 64159213 | 64158141 | ID=Msa0035800-mRNA-1:cds;Parent=Msa0035800-mRNA-1 |
| chr1_1 | three_prime_UTR | 64157955 | 64158140 | 64157955 | ID=Msa0035800-mRNA-1:three_prime_utr;Parent=Msa0035800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
