Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396170 | XP_013459511.1 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 8.90e-168 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396170 | sp|O48686|SNL3_ARATH | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.89e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396170 | A0A072UV92 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 4.25e-168 | 485 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1396170 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035800 | Msa1396170 | 0.951733 | 1.094004e-109 | -8.615850e-47 |
| Msa0036000 | Msa1396170 | 0.801112 | 1.050089e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396170 | MtrunA17_Chr3g0093911 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 8.18e-172 | 485 |
| Msa1396170 | MtrunA17_Chr7g0252101 | 62.264 | 424 | 145 | 9 | 13 | 430 | 18 | 432 | 3.18e-170 | 484 |
| Msa1396170 | MtrunA17_Chr1g0207351 | 64.607 | 356 | 115 | 5 | 81 | 430 | 16 | 366 | 2.04e-150 | 431 |
| Msa1396170 | MtrunA17_Chr4g0075971 | 56.064 | 437 | 166 | 7 | 11 | 430 | 175 | 602 | 1.22e-139 | 412 |
| Msa1396170 | MtrunA17_Chr3g0077801 | 58.708 | 356 | 141 | 4 | 77 | 430 | 1 | 352 | 4.20e-132 | 384 |
| Msa1396170 | MtrunA17_Chr6g0488101 | 47.577 | 454 | 197 | 10 | 10 | 430 | 10 | 455 | 4.98e-125 | 370 |
| Msa1396170 | MtrunA17_Chr3g0077901 | 55.153 | 359 | 155 | 4 | 73 | 429 | 17 | 371 | 3.68e-124 | 364 |
| Msa1396170 | MtrunA17_Chr6g0488271 | 49.640 | 417 | 174 | 9 | 42 | 430 | 7 | 415 | 3.37e-121 | 358 |
| Msa1396170 | MtrunA17_Chr3g0077851 | 57.227 | 339 | 139 | 4 | 93 | 429 | 1 | 335 | 7.29e-121 | 355 |
| Msa1396170 | MtrunA17_Chr1g0209051 | 64.599 | 274 | 91 | 3 | 158 | 429 | 1 | 270 | 3.87e-118 | 345 |
| Msa1396170 | MtrunA17_Chr7g0243331 | 54.885 | 348 | 149 | 6 | 85 | 430 | 9 | 350 | 3.48e-112 | 333 |
| Msa1396170 | MtrunA17_Chr3g0112311 | 52.632 | 361 | 156 | 6 | 77 | 428 | 1 | 355 | 3.61e-111 | 331 |
| Msa1396170 | MtrunA17_Chr6g0452641 | 50.938 | 320 | 139 | 8 | 122 | 430 | 28 | 340 | 3.05e-82 | 256 |
| Msa1396170 | MtrunA17_Chr3g0122991 | 46.769 | 325 | 110 | 6 | 79 | 392 | 2 | 274 | 1.81e-79 | 247 |
| Msa1396170 | MtrunA17_Chr1g0202841 | 62.983 | 181 | 65 | 1 | 250 | 430 | 1 | 179 | 4.32e-72 | 224 |
| Msa1396170 | MtrunA17_Chr3g0123471 | 50.916 | 273 | 112 | 9 | 158 | 422 | 1 | 259 | 6.83e-69 | 219 |
| Msa1396170 | MtrunA17_Chr4g0075861 | 53.960 | 202 | 75 | 3 | 11 | 197 | 175 | 373 | 1.06e-50 | 175 |
| Msa1396170 | MtrunA17_Chr7g0243391 | 48.148 | 216 | 108 | 3 | 69 | 282 | 10 | 223 | 1.35e-50 | 171 |
| Msa1396170 | MtrunA17_Chr1g0196231 | 62.893 | 159 | 49 | 5 | 62 | 218 | 216 | 366 | 7.02e-49 | 170 |
| Msa1396170 | MtrunA17_Chr1g0206951 | 65.487 | 113 | 38 | 1 | 80 | 191 | 2 | 114 | 1.55e-40 | 140 |
| Msa1396170 | MtrunA17_Chr1g0187941 | 55.474 | 137 | 61 | 0 | 250 | 386 | 1 | 137 | 3.35e-40 | 140 |
| Msa1396170 | MtrunA17_Chr6g0486591 | 47.853 | 163 | 72 | 4 | 277 | 430 | 1 | 159 | 1.44e-35 | 129 |
| Msa1396170 | MtrunA17_Chr1g0209191 | 60.396 | 101 | 34 | 2 | 332 | 429 | 1 | 98 | 5.37e-34 | 122 |
| Msa1396170 | MtrunA17_Chr1g0196241 | 70.000 | 80 | 20 | 2 | 324 | 402 | 4 | 80 | 6.36e-30 | 111 |
| Msa1396170 | MtrunA17_Chr1g0209061 | 52.212 | 113 | 43 | 1 | 4 | 116 | 6 | 107 | 5.78e-28 | 106 |
| Msa1396170 | MtrunA17_Chr6g0459061 | 27.900 | 319 | 191 | 11 | 85 | 386 | 18 | 314 | 2.02e-22 | 98.2 |
| Msa1396170 | MtrunA17_Chr7g0238781 | 41.045 | 134 | 75 | 4 | 109 | 240 | 27 | 158 | 2.35e-18 | 82.0 |
| Msa1396170 | MtrunA17_Chr8g0364231 | 39.316 | 117 | 63 | 3 | 9 | 125 | 43 | 151 | 7.31e-15 | 77.0 |
| Msa1396170 | MtrunA17_Chr1g0206781 | 36.522 | 115 | 57 | 3 | 2 | 116 | 5 | 103 | 6.83e-14 | 68.2 |
| Msa1396170 | MtrunA17_Chr1g0209201 | 52.941 | 68 | 29 | 2 | 11 | 78 | 19 | 83 | 8.85e-14 | 68.6 |
| Msa1396170 | MtrunA17_Chr5g0415031 | 38.835 | 103 | 55 | 2 | 9 | 111 | 44 | 138 | 9.36e-13 | 70.5 |
| Msa1396170 | MtrunA17_Chr6g0452021 | 36.752 | 117 | 64 | 3 | 9 | 125 | 44 | 150 | 6.06e-12 | 67.4 |
| Msa1396170 | MtrunA17_Chr6g0452001 | 35.897 | 117 | 67 | 2 | 9 | 125 | 64 | 172 | 9.79e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396170 | AT1G24190.1 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.96e-14 | 75.5 |
| Msa1396170 | AT1G24190.2 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 4.13e-14 | 75.1 |
| Msa1396170 | AT1G24190.3 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 4.40e-14 | 75.1 |
| Msa1396170 | AT3G01320.1 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.43e-13 | 72.4 |
| Msa1396170 | AT3G01320.2 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.67e-13 | 72.4 |
| Msa1396170 | AT5G15020.2 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.66e-13 | 70.9 |
| Msa1396170 | AT5G15020.1 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.68e-13 | 70.9 |
| Msa1396170 | AT1G59890.1 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.74e-12 | 70.1 |
| Msa1396170 | AT1G59890.4 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.79e-12 | 70.1 |
| Msa1396170 | AT1G59890.2 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.80e-12 | 70.1 |
| Msa1396170 | AT1G59890.3 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.83e-12 | 70.1 |
| Msa1396170 | AT5G15025.1 | 44.595 | 74 | 39 | 1 | 9 | 82 | 48 | 119 | 9.63e-12 | 62.4 |
| Msa1396170 | AT1G10450.2 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.73e-11 | 66.2 |
| Msa1396170 | AT1G10450.1 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.73e-11 | 66.2 |
| Msa1396170 | AT1G10450.3 | 47.674 | 86 | 41 | 2 | 9 | 92 | 85 | 168 | 2.76e-11 | 66.2 |
| Msa1396170 | AT1G70060.2 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.76e-11 | 64.7 |
| Msa1396170 | AT1G70060.1 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.76e-11 | 64.7 |
Find 100 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACTCGATTTATTTCT+TGG | 0.092423 | tig0022001:-98773 | Msa1396170:five_prime_UTR |
| ACCTTCTTTAATCTCGTAAA+TGG | 0.163720 | tig0022001:+97324 | None:intergenic |
| AGGACATACAGATTTAATTT+TGG | 0.178602 | tig0022001:-98523 | Msa1396170:CDS |
| CCTTTACTTCTTCAAATTTC+AGG | 0.195615 | tig0022001:-97501 | Msa1396170:CDS |
| CTCTCATATCCCCACTTGTT+TGG | 0.217984 | tig0022001:+96805 | None:intergenic |
| ACTTATCCAACAATGGAAAA+TGG | 0.296275 | tig0022001:-97153 | Msa1396170:CDS |
| GTAACCAACTTAAGGAAAAT+AGG | 0.297033 | tig0022001:+96994 | None:intergenic |
| GATGACCTATTTCAGTTTGC+TGG | 0.310501 | tig0022001:-97588 | Msa1396170:CDS |
| GTCATCAAAATCTAGTGTTT+TGG | 0.312349 | tig0022001:+97605 | None:intergenic |
| TCTCATATCCCCACTTGTTT+GGG | 0.317017 | tig0022001:+96806 | None:intergenic |
| TTCAAGTCTGACATAATTCA+TGG | 0.319194 | tig0022001:+96897 | None:intergenic |
| TGTCAATAATTTGACTAGAA+TGG | 0.333595 | tig0022001:-96540 | Msa1396170:three_prime_UTR |
| AATCGAGTGAAGGAGGATTA+AGG | 0.338588 | tig0022001:+98783 | None:intergenic |
| ACAATATGTTGCGTATATTC+AGG | 0.339511 | tig0022001:-96751 | Msa1396170:CDS |
| CTCTGAGGAATTTGTCTTGG+TGG | 0.339559 | tig0022001:-97232 | Msa1396170:CDS |
| GTCAATAATTTGACTAGAAT+GGG | 0.344400 | tig0022001:-96539 | Msa1396170:three_prime_UTR |
| AGAGCCAAGAGACTGCTTAA+AGG | 0.355381 | tig0022001:-98543 | Msa1396170:CDS |
| GAGATACCCCAGACCGATTC+GGG | 0.356763 | tig0022001:+98680 | None:intergenic |
| TTGGTCTAGTATGCTAATAA+AGG | 0.367363 | tig0022001:+97458 | None:intergenic |
| GTACACAATTGTTATTTCCT+TGG | 0.372361 | tig0022001:+96936 | None:intergenic |
| ATACGCGCCTTGCTTGCTTT+TGG | 0.373631 | tig0022001:-97261 | Msa1396170:CDS |
| AGAGGATATTCATGAGGATC+TGG | 0.374895 | tig0022001:+96694 | None:intergenic |
| AGAGAAATATGAACTTCCTT+TGG | 0.379216 | tig0022001:-97646 | Msa1396170:CDS |
| ACACGCCAGCAAACTGAAAT+AGG | 0.383496 | tig0022001:+97583 | None:intergenic |
| TTGTTAAAATATTTGAGGTC+TGG | 0.397164 | tig0022001:-98600 | Msa1396170:CDS |
| TAAAATTGTTAAAATATTTG+AGG | 0.399386 | tig0022001:-98605 | Msa1396170:CDS |
| TCTTGCAACTGCGGGTTTGA+AGG | 0.402448 | tig0022001:-96674 | Msa1396170:CDS |
| GAAGAACTCCCGAATCGGTC+TGG | 0.403343 | tig0022001:-98688 | Msa1396170:CDS |
| CTGCGGGTTTGAAGGTTGAT+TGG | 0.408942 | tig0022001:-96666 | Msa1396170:CDS |
| TTTGAAGAAGTAAAGGTCCT+TGG | 0.419354 | tig0022001:+97508 | None:intergenic |
| CATCACAAGTAACCAACTTA+AGG | 0.431314 | tig0022001:+96986 | None:intergenic |
| TGAGATACCCCAGACCGATT+CGG | 0.439020 | tig0022001:+98679 | None:intergenic |
| TTGCTGGCGTGTGCAAGAAT+TGG | 0.439926 | tig0022001:-97572 | Msa1396170:CDS |
| TATGTCAGACTTGAAACTTT+GGG | 0.450616 | tig0022001:-96889 | Msa1396170:CDS |
| TTGAAGAAGTAAAGGTCCTT+GGG | 0.450950 | tig0022001:+97509 | None:intergenic |
| GTTGTGATACACAGGGAAAA+AGG | 0.453560 | tig0022001:-97682 | Msa1396170:intron |
| AAGAACTCCCGAATCGGTCT+GGG | 0.457288 | tig0022001:-98687 | Msa1396170:CDS |
| TCCATTTACGAGATTAAAGA+AGG | 0.460681 | tig0022001:-97325 | Msa1396170:CDS |
| GCATTTGCCAAAAGCAAGCA+AGG | 0.466413 | tig0022001:+97254 | None:intergenic |
| CAATATGTTGCGTATATTCA+GGG | 0.478833 | tig0022001:-96750 | Msa1396170:CDS |
| TTCAACGCCTTCCTCCCAAC+TGG | 0.479823 | tig0022001:-98498 | Msa1396170:intron |
| ATCAATCTCGAAATTGTGGT+TGG | 0.483573 | tig0022001:-97179 | Msa1396170:CDS |
| GTTACTAACAAGGTTAACAT+AGG | 0.489348 | tig0022001:-97084 | Msa1396170:CDS |
| GATTCATAAACTACAGAAAA+GGG | 0.491421 | tig0022001:+98891 | None:intergenic |
| AAGGAAAATAGGAATTGTTA+CGG | 0.492083 | tig0022001:+97005 | None:intergenic |
| TTATGTCAGACTTGAAACTT+TGG | 0.492268 | tig0022001:-96890 | Msa1396170:CDS |
| CCTGAAATTTGAAGAAGTAA+AGG | 0.496936 | tig0022001:+97501 | None:intergenic |
| TGAATATACGCAACATATTG+TGG | 0.500844 | tig0022001:+96753 | None:intergenic |
| TCAATCTCGAAATTGTGGTT+GGG | 0.502080 | tig0022001:-97178 | Msa1396170:CDS |
| CAAATCAGTTCAATAATCAA+TGG | 0.506442 | tig0022001:-98812 | Msa1396170:five_prime_UTR |
| AGTAGTTTATTTATTGTCCA+AGG | 0.507122 | tig0022001:-96953 | Msa1396170:CDS |
| ATGCTCTGAGGAATTTGTCT+TGG | 0.509803 | tig0022001:-97235 | Msa1396170:CDS |
| ATGTCCTTTAAGCAGTCTCT+TGG | 0.511508 | tig0022001:+98539 | None:intergenic |
| CTGGCGTGTGCAAGAATTGG+AGG | 0.514025 | tig0022001:-97569 | Msa1396170:CDS |
| GAATATCCTCTTGCAACTGC+GGG | 0.515431 | tig0022001:-96682 | Msa1396170:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | tig0022001:-97183 | Msa1396170:CDS |
| CGATTCATAAACTACAGAAA+AGG | 0.524691 | tig0022001:+98890 | None:intergenic |
| TTACTAACAAGGTTAACATA+GGG | 0.524806 | tig0022001:-97083 | Msa1396170:CDS |
| TTAAAATATTTGAGGTCTGG+AGG | 0.527038 | tig0022001:-98597 | Msa1396170:CDS |
| TTGAACAATTCAGCGAGCAG+AGG | 0.528085 | tig0022001:+98832 | None:intergenic |
| AAAGTAGTAACTAACCAGTT+GGG | 0.541355 | tig0022001:+98484 | None:intergenic |
| TGAAGAAGCGTTAACTTCAG+AGG | 0.542973 | tig0022001:+97287 | None:intergenic |
| AAGATGAAGAACTCCCGAAT+CGG | 0.552281 | tig0022001:-98693 | Msa1396170:CDS |
| GAAGCGTTAACTTCAGAGGA+AGG | 0.556189 | tig0022001:+97291 | None:intergenic |
| AGCGTTAACTTCAGAGGAAG+GGG | 0.556461 | tig0022001:+97293 | None:intergenic |
| TGAATATCCTCTTGCAACTG+CGG | 0.565936 | tig0022001:-96683 | Msa1396170:CDS |
| GAGGATATTCATGAGGATCT+GGG | 0.567810 | tig0022001:+96695 | None:intergenic |
| TGTATCATAATTGAATGTGT+TGG | 0.567872 | tig0022001:-96434 | Msa1396170:three_prime_UTR |
| TGAACAATTCAGCGAGCAGA+GGG | 0.575230 | tig0022001:+98833 | None:intergenic |
| AGAAATAAATCGAGTGAAGG+AGG | 0.577568 | tig0022001:+98776 | None:intergenic |
| AACAATGGAAAATGGAGAGA+GGG | 0.577776 | tig0022001:-97145 | Msa1396170:CDS |
| TAACTAACCAGTTGGGAGGA+AGG | 0.577921 | tig0022001:+98491 | None:intergenic |
| TTCAAACCCGCAGTTGCAAG+AGG | 0.581215 | tig0022001:+96676 | None:intergenic |
| AAGGTTAACATAGGGGTACT+CGG | 0.582340 | tig0022001:-97075 | Msa1396170:CDS |
| AACTACAGAAAAGGGAACAA+AGG | 0.590578 | tig0022001:+98899 | None:intergenic |
| AATATATGTTGTTACTAACA+AGG | 0.592186 | tig0022001:-97094 | Msa1396170:CDS |
| AAGCGTTAACTTCAGAGGAA+GGG | 0.593674 | tig0022001:+97292 | None:intergenic |
| CCAAGAAATAAATCGAGTGA+AGG | 0.596858 | tig0022001:+98773 | None:intergenic |
| TTGGGTTACTTATCCAACAA+TGG | 0.601052 | tig0022001:-97160 | Msa1396170:CDS |
| GCCTATGTTACGTATTCTAG+CGG | 0.612849 | tig0022001:-97393 | Msa1396170:CDS |
| TCCGCTAGAATACGTAACAT+AGG | 0.616925 | tig0022001:+97392 | None:intergenic |
| AATCGGTCTGGGGTATCTCA+AGG | 0.617645 | tig0022001:-98676 | Msa1396170:CDS |
| CATTGATCAACCCAAACAAG+TGG | 0.618149 | tig0022001:-96816 | Msa1396170:CDS |
| CAACAATGGAAAATGGAGAG+AGG | 0.619055 | tig0022001:-97146 | Msa1396170:CDS |
| GAAAATAGGAATTGTTACGG+AGG | 0.623593 | tig0022001:+97008 | None:intergenic |
| ACGTAACATAGGCATGGCGG+AGG | 0.626225 | tig0022001:+97403 | None:intergenic |
| ATTGATCAACCCAAACAAGT+GGG | 0.630697 | tig0022001:-96815 | Msa1396170:CDS |
| TAGAATACGTAACATAGGCA+TGG | 0.637978 | tig0022001:+97397 | None:intergenic |
| GAACAACAAAACTCGACAGA+GGG | 0.644692 | tig0022001:+98921 | None:intergenic |
| AAAATAGGAATTGTTACGGA+GGG | 0.644724 | tig0022001:+97009 | None:intergenic |
| TACTAACAAGGTTAACATAG+GGG | 0.649187 | tig0022001:-97082 | Msa1396170:CDS |
| GTGATATCAAGCACATCCAA+AGG | 0.656948 | tig0022001:+97630 | None:intergenic |
| AATATGTTGCGTATATTCAG+GGG | 0.657333 | tig0022001:-96749 | Msa1396170:CDS |
| TGGCGTGTGCAAGAATTGGA+GGG | 0.662506 | tig0022001:-97568 | Msa1396170:CDS |
| GTAGTAACTAACCAGTTGGG+AGG | 0.669294 | tig0022001:+98487 | None:intergenic |
| TTGATCAACCCAAACAAGTG+GGG | 0.674855 | tig0022001:-96814 | Msa1396170:CDS |
| GTTGCAAGAGGATATTCATG+AGG | 0.689195 | tig0022001:+96688 | None:intergenic |
| GGAACAACAAAACTCGACAG+AGG | 0.702235 | tig0022001:+98920 | None:intergenic |
| AGAACTCCCGAATCGGTCTG+GGG | 0.703093 | tig0022001:-98686 | Msa1396170:CDS |
| AATACGTAACATAGGCATGG+CGG | 0.750285 | tig0022001:+97400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATTATATTCAA+AGG | + | tig0022001:96753-96772 | None:intergenic | 10.0% |
| !! | TAAAATTGTTAAAATATTTG+AGG | - | tig0022001:96786-96805 | Msa1396170:CDS | 10.0% |
| !!! | TTGAAATATAAGATATTTTA+AGG | + | tig0022001:97644-97663 | None:intergenic | 10.0% |
| !! | ATTATTGACAAAAAAAATAT+GGG | + | tig0022001:98841-98860 | None:intergenic | 10.0% |
| !! | AATTATTGACAAAAAAAATA+TGG | + | tig0022001:98842-98861 | None:intergenic | 10.0% |
| !!! | TTGGTTTTATTATTTTGAAT+TGG | - | tig0022001:96637-96656 | Msa1396170:CDS | 15.0% |
| !! | TTTAATAAAATCATGGAAAA+CGG | + | tig0022001:97617-97636 | None:intergenic | 15.0% |
| !! | AGGTTTATTTAATAAAATCA+TGG | + | tig0022001:97624-97643 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTATTACTCGTT+TGG | - | tig0022001:96967-96986 | Msa1396170:CDS | 20.0% |
| !!! | CTTTTTTTTATTACTCGTTT+GGG | - | tig0022001:96968-96987 | Msa1396170:CDS | 20.0% |
| !! | TAAAACCTATATTTCTTTGT+AGG | - | tig0022001:97550-97569 | Msa1396170:CDS | 20.0% |
| !! | AATAACCTACAAAGAAATAT+AGG | + | tig0022001:97558-97577 | None:intergenic | 20.0% |
| !! | AATATATGTTGTTACTAACA+AGG | - | tig0022001:98297-98316 | Msa1396170:intron | 20.0% |
| ! | GATTCATAAACTACAGAAAA+GGG | + | tig0022001:96503-96522 | None:intergenic | 25.0% |
| !! | CTTTTCTGTAGTTTATGAAT+CGG | - | tig0022001:96502-96521 | Msa1396170:three_prime_UTR | 25.0% |
| !! | TTTTCTGTAGTTTATGAATC+GGG | - | tig0022001:96503-96522 | Msa1396170:three_prime_UTR | 25.0% |
| ! | CAAATCAGTTCAATAATCAA+TGG | - | tig0022001:96579-96598 | Msa1396170:three_prime_UTR | 25.0% |
| !! | TTGTTAAAATATTTGAGGTC+TGG | - | tig0022001:96791-96810 | Msa1396170:CDS | 25.0% |
| !!! | AGGACATACAGATTTAATTT+TGG | - | tig0022001:96868-96887 | Msa1396170:CDS | 25.0% |
| !!! | GGACATACAGATTTAATTTT+GGG | - | tig0022001:96869-96888 | Msa1396170:CDS | 25.0% |
| ! | AGTTAATGCAATGATTGTTA+AGG | - | tig0022001:97075-97094 | Msa1396170:CDS | 25.0% |
| ! | AATCATACTAAATGCTTGTT+TGG | - | tig0022001:97134-97153 | Msa1396170:CDS | 25.0% |
| ! | GTTTAAATGGAAGACATTTA+GGG | + | tig0022001:97413-97432 | None:intergenic | 25.0% |
| ! | TGTTTAAATGGAAGACATTT+AGG | + | tig0022001:97414-97433 | None:intergenic | 25.0% |
| !!! | AGTTTACTGGAGAAATTTTT+TGG | - | tig0022001:97856-97875 | Msa1396170:intron | 25.0% |
| ! | TTACTAACAAGGTTAACATA+GGG | - | tig0022001:98308-98327 | Msa1396170:intron | 25.0% |
| ! | AAGGAAAATAGGAATTGTTA+CGG | + | tig0022001:98389-98408 | None:intergenic | 25.0% |
| !! | AATTCCTATTTTCCTTAAGT+TGG | - | tig0022001:98393-98412 | Msa1396170:intron | 25.0% |
| ! | AGTAGTTTATTTATTGTCCA+AGG | - | tig0022001:98438-98457 | Msa1396170:intron | 25.0% |
| !! | AATGCATAACAGTTTTTCTT+CGG | + | tig0022001:98559-98578 | None:intergenic | 25.0% |
| !!! | TTTTAGGCATCTAAAATATG+AGG | - | tig0022001:98750-98769 | Msa1396170:five_prime_UTR | 25.0% |
| ! | TGTCAATAATTTGACTAGAA+TGG | - | tig0022001:98851-98870 | Msa1396170:five_prime_UTR | 25.0% |
| ! | GTCAATAATTTGACTAGAAT+GGG | - | tig0022001:98852-98871 | Msa1396170:five_prime_UTR | 25.0% |
| ! | TGTATCATAATTGAATGTGT+TGG | - | tig0022001:98957-98976 | Msa1396170:five_prime_UTR | 25.0% |
| CGATTCATAAACTACAGAAA+AGG | + | tig0022001:96504-96523 | None:intergenic | 30.0% | |
| ! | TTAAAATATTTGAGGTCTGG+AGG | - | tig0022001:96794-96813 | Msa1396170:CDS | 30.0% |
| AAAGTAGTAACTAACCAGTT+GGG | + | tig0022001:96910-96929 | None:intergenic | 30.0% | |
| AAAAGTAGTAACTAACCAGT+TGG | + | tig0022001:96911-96930 | None:intergenic | 30.0% | |
| TACTAAATGCTTGTTTGGAT+TGG | - | tig0022001:97139-97158 | Msa1396170:CDS | 30.0% | |
| ! | ACATGTTTTGTAAGACTGTT+TGG | - | tig0022001:97183-97202 | Msa1396170:CDS | 30.0% |
| ATAAGCTGTATGAGCTATAT+TGG | + | tig0022001:97273-97292 | None:intergenic | 30.0% | |
| GGATTCAAGAGTTGTTTAAA+TGG | + | tig0022001:97426-97445 | None:intergenic | 30.0% | |
| AACAACTCTTGAATCCATAT+TGG | - | tig0022001:97430-97449 | Msa1396170:CDS | 30.0% | |
| ACAGTATCTCAATACAATGA+AGG | - | tig0022001:97482-97501 | Msa1396170:CDS | 30.0% | |
| CAGTATCTCAATACAATGAA+GGG | - | tig0022001:97483-97502 | Msa1396170:CDS | 30.0% | |
| AGAGAAATATGAACTTCCTT+TGG | - | tig0022001:97745-97764 | Msa1396170:intron | 30.0% | |
| ! | GTCATCAAAATCTAGTGTTT+TGG | + | tig0022001:97789-97808 | None:intergenic | 30.0% |
| !!! | AGAAATTTTTTGGTATCCCA+AGG | - | tig0022001:97866-97885 | Msa1396170:intron | 30.0% |
| CCTGAAATTTGAAGAAGTAA+AGG | + | tig0022001:97893-97912 | None:intergenic | 30.0% | |
| CCTTTACTTCTTCAAATTTC+AGG | - | tig0022001:97890-97909 | Msa1396170:intron | 30.0% | |
| TTGGTCTAGTATGCTAATAA+AGG | + | tig0022001:97936-97955 | None:intergenic | 30.0% | |
| ! | AGACCAAAAAGTATATCACT+TGG | - | tig0022001:97949-97968 | Msa1396170:intron | 30.0% |
| ! | TCTCCAAGTGATATACTTTT+TGG | + | tig0022001:97955-97974 | None:intergenic | 30.0% |
| TCCATTTACGAGATTAAAGA+AGG | - | tig0022001:98066-98085 | Msa1396170:intron | 30.0% | |
| ACCTTCTTTAATCTCGTAAA+TGG | + | tig0022001:98070-98089 | None:intergenic | 30.0% | |
| ACTTATCCAACAATGGAAAA+TGG | - | tig0022001:98238-98257 | Msa1396170:intron | 30.0% | |
| GTTACTAACAAGGTTAACAT+AGG | - | tig0022001:98307-98326 | Msa1396170:intron | 30.0% | |
| TACTAACAAGGTTAACATAG+GGG | - | tig0022001:98309-98328 | Msa1396170:intron | 30.0% | |
| AAAATAGGAATTGTTACGGA+GGG | + | tig0022001:98385-98404 | None:intergenic | 30.0% | |
| GTAACCAACTTAAGGAAAAT+AGG | + | tig0022001:98400-98419 | None:intergenic | 30.0% | |
| !! | GTACACAATTGTTATTTCCT+TGG | + | tig0022001:98458-98477 | None:intergenic | 30.0% |
| TTCAAGTCTGACATAATTCA+TGG | + | tig0022001:98497-98516 | None:intergenic | 30.0% | |
| TTATGTCAGACTTGAAACTT+TGG | - | tig0022001:98501-98520 | Msa1396170:CDS | 30.0% | |
| TATGTCAGACTTGAAACTTT+GGG | - | tig0022001:98502-98521 | Msa1396170:CDS | 30.0% | |
| ! | GCATTATTTTCTACTTCGAT+TGG | - | tig0022001:98532-98551 | Msa1396170:CDS | 30.0% |
| TGAATATACGCAACATATTG+TGG | + | tig0022001:98641-98660 | None:intergenic | 30.0% | |
| ACAATATGTTGCGTATATTC+AGG | - | tig0022001:98640-98659 | Msa1396170:CDS | 30.0% | |
| CAATATGTTGCGTATATTCA+GGG | - | tig0022001:98641-98660 | Msa1396170:CDS | 30.0% | |
| AATATGTTGCGTATATTCAG+GGG | - | tig0022001:98642-98661 | Msa1396170:CDS | 30.0% | |
| !!! | ATTTTACAGTGTGTTACTTG+TGG | - | tig0022001:98803-98822 | Msa1396170:five_prime_UTR | 30.0% |
| AGAATGGGAAAAACTTGTAA+TGG | - | tig0022001:98867-98886 | Msa1396170:five_prime_UTR | 30.0% | |
| AACTACAGAAAAGGGAACAA+AGG | + | tig0022001:96495-96514 | None:intergenic | 35.0% | |
| AGAAATAAATCGAGTGAAGG+AGG | + | tig0022001:96618-96637 | None:intergenic | 35.0% | |
| CCAAGAAATAAATCGAGTGA+AGG | + | tig0022001:96621-96640 | None:intergenic | 35.0% | |
| ! | CCTTCACTCGATTTATTTCT+TGG | - | tig0022001:96618-96637 | Msa1396170:CDS | 35.0% |
| TGAACATATGTGAAGTGCAA+TGG | + | tig0022001:96935-96954 | None:intergenic | 35.0% | |
| GTACTTAGTAGGTTAAAGCT+TGG | - | tig0022001:97013-97032 | Msa1396170:CDS | 35.0% | |
| TATGCAAGCTTATACACAAG+CGG | - | tig0022001:97362-97381 | Msa1396170:CDS | 35.0% | |
| ATCACAACAATGACAGTGTT+AGG | + | tig0022001:97697-97716 | None:intergenic | 35.0% | |
| TGTCATTGTTGTGATACACA+GGG | - | tig0022001:97702-97721 | Msa1396170:intron | 35.0% | |
| ! | GGGCTTTTCATAAAGTTTAC+TGG | - | tig0022001:97843-97862 | Msa1396170:intron | 35.0% |
| TTGAAGAAGTAAAGGTCCTT+GGG | + | tig0022001:97885-97904 | None:intergenic | 35.0% | |
| TTTGAAGAAGTAAAGGTCCT+TGG | + | tig0022001:97886-97905 | None:intergenic | 35.0% | |
| TAGAATACGTAACATAGGCA+TGG | + | tig0022001:97997-98016 | None:intergenic | 35.0% | |
| GTCTATCAATCTCGAAATTG+TGG | - | tig0022001:98208-98227 | Msa1396170:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | - | tig0022001:98212-98231 | Msa1396170:intron | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | - | tig0022001:98213-98232 | Msa1396170:intron | 35.0% | |
| TTGGGTTACTTATCCAACAA+TGG | - | tig0022001:98231-98250 | Msa1396170:intron | 35.0% | |
| AACAATGGAAAATGGAGAGA+GGG | - | tig0022001:98246-98265 | Msa1396170:intron | 35.0% | |
| GAAAATAGGAATTGTTACGG+AGG | + | tig0022001:98386-98405 | None:intergenic | 35.0% | |
| CATCACAAGTAACCAACTTA+AGG | + | tig0022001:98408-98427 | None:intergenic | 35.0% | |
| ATTGATCAACCCAAACAAGT+GGG | - | tig0022001:98576-98595 | Msa1396170:CDS | 35.0% | |
| !! | TGAAGGTTGATTGGTGTTTT+AGG | - | tig0022001:98734-98753 | Msa1396170:five_prime_UTR | 35.0% |
| GAACAACAAAACTCGACAGA+GGG | + | tig0022001:96473-96492 | None:intergenic | 40.0% | |
| AATCGAGTGAAGGAGGATTA+AGG | + | tig0022001:96611-96630 | None:intergenic | 40.0% | |
| AAGATGAAGAACTCCCGAAT+CGG | - | tig0022001:96698-96717 | Msa1396170:CDS | 40.0% | |
| ATGTCCTTTAAGCAGTCTCT+TGG | + | tig0022001:96855-96874 | None:intergenic | 40.0% | |
| TACTAAGTACTAACCGTGGT+CGG | + | tig0022001:97003-97022 | None:intergenic | 40.0% | |
| AACCTACTAAGTACTAACCG+TGG | + | tig0022001:97007-97026 | None:intergenic | 40.0% | |
| ! | GAAGACATTTAGGGCATGTT+TGG | + | tig0022001:97404-97423 | None:intergenic | 40.0% |
| !! | GCTCTGGAACTATACCAATA+TGG | + | tig0022001:97447-97466 | None:intergenic | 40.0% |
| !! | TCAAATAGCTTCTGAAGCTC+TGG | + | tig0022001:97463-97482 | None:intergenic | 40.0% |
| CTGTCATTGTTGTGATACAC+AGG | - | tig0022001:97701-97720 | Msa1396170:intron | 40.0% | |
| GTTGTGATACACAGGGAAAA+AGG | - | tig0022001:97709-97728 | Msa1396170:intron | 40.0% | |
| GTGATATCAAGCACATCCAA+AGG | + | tig0022001:97764-97783 | None:intergenic | 40.0% | |
| GATGACCTATTTCAGTTTGC+TGG | - | tig0022001:97803-97822 | Msa1396170:intron | 40.0% | |
| AATACGTAACATAGGCATGG+CGG | + | tig0022001:97994-98013 | None:intergenic | 40.0% | |
| GCCTATGTTACGTATTCTAG+CGG | - | tig0022001:97998-98017 | Msa1396170:intron | 40.0% | |
| TCCGCTAGAATACGTAACAT+AGG | + | tig0022001:98002-98021 | None:intergenic | 40.0% | |
| AAGCGTTAACTTCAGAGGAA+GGG | + | tig0022001:98102-98121 | None:intergenic | 40.0% | |
| !! | TGAAGAAGCGTTAACTTCAG+AGG | + | tig0022001:98107-98126 | None:intergenic | 40.0% |
| !! | ATGCTCTGAGGAATTTGTCT+TGG | - | tig0022001:98156-98175 | Msa1396170:intron | 40.0% |
| ! | CTCTCTCCATTTTCCATTGT+TGG | + | tig0022001:98247-98266 | None:intergenic | 40.0% |
| CAACAATGGAAAATGGAGAG+AGG | - | tig0022001:98245-98264 | Msa1396170:intron | 40.0% | |
| !! | AAGGTTAACATAGGGGTACT+CGG | - | tig0022001:98316-98335 | Msa1396170:intron | 40.0% |
| CATTGATCAACCCAAACAAG+TGG | - | tig0022001:98575-98594 | Msa1396170:CDS | 40.0% | |
| TTGATCAACCCAAACAAGTG+GGG | - | tig0022001:98577-98596 | Msa1396170:CDS | 40.0% | |
| TCTCATATCCCCACTTGTTT+GGG | + | tig0022001:98588-98607 | None:intergenic | 40.0% | |
| GAGGATATTCATGAGGATCT+GGG | + | tig0022001:98699-98718 | None:intergenic | 40.0% | |
| AGAGGATATTCATGAGGATC+TGG | + | tig0022001:98700-98719 | None:intergenic | 40.0% | |
| GTTGCAAGAGGATATTCATG+AGG | + | tig0022001:98706-98725 | None:intergenic | 40.0% | |
| TGAATATCCTCTTGCAACTG+CGG | - | tig0022001:98708-98727 | Msa1396170:exon | 40.0% | |
| GGAACAACAAAACTCGACAG+AGG | + | tig0022001:96474-96493 | None:intergenic | 45.0% | |
| TGAACAATTCAGCGAGCAGA+GGG | + | tig0022001:96561-96580 | None:intergenic | 45.0% | |
| TTGAACAATTCAGCGAGCAG+AGG | + | tig0022001:96562-96581 | None:intergenic | 45.0% | |
| AGAGCCAAGAGACTGCTTAA+AGG | - | tig0022001:96848-96867 | Msa1396170:CDS | 45.0% | |
| TAACTAACCAGTTGGGAGGA+AGG | + | tig0022001:96903-96922 | None:intergenic | 45.0% | |
| GTAGTAACTAACCAGTTGGG+AGG | + | tig0022001:96907-96926 | None:intergenic | 45.0% | |
| GACCACGGTTAGTACTTAGT+AGG | - | tig0022001:97002-97021 | Msa1396170:CDS | 45.0% | |
| CACAGGGAAAAAGGTGAAGA+AGG | - | tig0022001:97718-97737 | Msa1396170:intron | 45.0% | |
| ACACGCCAGCAAACTGAAAT+AGG | + | tig0022001:97811-97830 | None:intergenic | 45.0% | |
| AGCGTTAACTTCAGAGGAAG+GGG | + | tig0022001:98101-98120 | None:intergenic | 45.0% | |
| ! | GAAGCGTTAACTTCAGAGGA+AGG | + | tig0022001:98103-98122 | None:intergenic | 45.0% |
| GCATTTGCCAAAAGCAAGCA+AGG | + | tig0022001:98140-98159 | None:intergenic | 45.0% | |
| ! | TGCTTTTGGCAAATGCTCTG+AGG | - | tig0022001:98144-98163 | Msa1396170:intron | 45.0% |
| ! | CTCTGAGGAATTTGTCTTGG+TGG | - | tig0022001:98159-98178 | Msa1396170:intron | 45.0% |
| CTCTCATATCCCCACTTGTT+TGG | + | tig0022001:98589-98608 | None:intergenic | 45.0% | |
| GAATATCCTCTTGCAACTGC+GGG | - | tig0022001:98709-98728 | Msa1396170:exon | 45.0% | |
| AAGAACTCCCGAATCGGTCT+GGG | - | tig0022001:96704-96723 | Msa1396170:CDS | 50.0% | |
| TGAGATACCCCAGACCGATT+CGG | + | tig0022001:96715-96734 | None:intergenic | 50.0% | |
| ! | AATCGGTCTGGGGTATCTCA+AGG | - | tig0022001:96715-96734 | Msa1396170:CDS | 50.0% |
| TTGCTGGCGTGTGCAAGAAT+TGG | - | tig0022001:97819-97838 | Msa1396170:intron | 50.0% | |
| TGGCGTGTGCAAGAATTGGA+GGG | - | tig0022001:97823-97842 | Msa1396170:intron | 50.0% | |
| ! | ATACGCGCCTTGCTTGCTTT+TGG | - | tig0022001:98130-98149 | Msa1396170:intron | 50.0% |
| TTCAAACCCGCAGTTGCAAG+AGG | + | tig0022001:98718-98737 | None:intergenic | 50.0% | |
| TCTTGCAACTGCGGGTTTGA+AGG | - | tig0022001:98717-98736 | Msa1396170:exon | 50.0% | |
| ! | CTGCGGGTTTGAAGGTTGAT+TGG | - | tig0022001:98725-98744 | Msa1396170:five_prime_UTR | 50.0% |
| GAAGAACTCCCGAATCGGTC+TGG | - | tig0022001:96703-96722 | Msa1396170:CDS | 55.0% | |
| AGAACTCCCGAATCGGTCTG+GGG | - | tig0022001:96705-96724 | Msa1396170:CDS | 55.0% | |
| ! | GAGATACCCCAGACCGATTC+GGG | + | tig0022001:96714-96733 | None:intergenic | 55.0% |
| TTCAACGCCTTCCTCCCAAC+TGG | - | tig0022001:96893-96912 | Msa1396170:CDS | 55.0% | |
| TGGGCTATGTAAGCCGACCA+CGG | - | tig0022001:96987-97006 | Msa1396170:CDS | 55.0% | |
| CTGGCGTGTGCAAGAATTGG+AGG | - | tig0022001:97822-97841 | Msa1396170:intron | 55.0% | |
| ACGTAACATAGGCATGGCGG+AGG | + | tig0022001:97991-98010 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022001 | gene | 96432 | 98981 | 96432 | ID=Msa1396170;Name=Msa1396170 |
| tig0022001 | mRNA | 96432 | 98981 | 96432 | ID=Msa1396170-mRNA-1;Parent=Msa1396170;Name=Msa1396170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=263|1|1|1|1|1|2|186|430 |
| tig0022001 | exon | 96432 | 97690 | 96432 | ID=Msa1396170-mRNA-1:exon:15337;Parent=Msa1396170-mRNA-1 |
| tig0022001 | exon | 98499 | 98981 | 98499 | ID=Msa1396170-mRNA-1:exon:15336;Parent=Msa1396170-mRNA-1 |
| tig0022001 | five_prime_UTR | 98719 | 98981 | 98719 | ID=Msa1396170-mRNA-1:five_prime_utr;Parent=Msa1396170-mRNA-1 |
| tig0022001 | CDS | 98499 | 98718 | 98499 | ID=Msa1396170-mRNA-1:cds;Parent=Msa1396170-mRNA-1 |
| tig0022001 | CDS | 96618 | 97690 | 96618 | ID=Msa1396170-mRNA-1:cds;Parent=Msa1396170-mRNA-1 |
| tig0022001 | three_prime_UTR | 96432 | 96617 | 96432 | ID=Msa1396170-mRNA-1:three_prime_utr;Parent=Msa1396170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
