Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036000 | sp|O48686|SNL3_ARATH | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.72e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0036000 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036000 | Msa1396170 | 0.801112 | 1.050089e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036000 | MtrunA17_Chr3g0093911 | 70.986 | 355 | 97 | 3 | 77 | 430 | 1 | 350 | 8.18e-172 | 485 |
| Msa0036000 | MtrunA17_Chr7g0252101 | 62.264 | 424 | 145 | 9 | 13 | 430 | 18 | 432 | 3.01e-170 | 484 |
| Msa0036000 | MtrunA17_Chr1g0207351 | 64.607 | 356 | 115 | 5 | 81 | 430 | 16 | 366 | 2.40e-150 | 431 |
| Msa0036000 | MtrunA17_Chr4g0075971 | 56.064 | 437 | 166 | 7 | 11 | 430 | 175 | 602 | 3.19e-140 | 414 |
| Msa0036000 | MtrunA17_Chr3g0077801 | 58.708 | 356 | 141 | 4 | 77 | 430 | 1 | 352 | 1.96e-132 | 385 |
| Msa0036000 | MtrunA17_Chr6g0488101 | 47.577 | 454 | 197 | 10 | 10 | 430 | 10 | 455 | 4.47e-125 | 370 |
| Msa0036000 | MtrunA17_Chr3g0077901 | 55.153 | 359 | 155 | 4 | 73 | 429 | 17 | 371 | 5.00e-124 | 364 |
| Msa0036000 | MtrunA17_Chr6g0488271 | 49.640 | 417 | 174 | 9 | 42 | 430 | 7 | 415 | 4.42e-121 | 358 |
| Msa0036000 | MtrunA17_Chr3g0077851 | 57.227 | 339 | 139 | 4 | 93 | 429 | 1 | 335 | 8.13e-121 | 355 |
| Msa0036000 | MtrunA17_Chr1g0209051 | 64.234 | 274 | 92 | 3 | 158 | 429 | 1 | 270 | 1.64e-118 | 346 |
| Msa0036000 | MtrunA17_Chr7g0243331 | 54.885 | 348 | 149 | 6 | 85 | 430 | 9 | 350 | 1.68e-112 | 334 |
| Msa0036000 | MtrunA17_Chr3g0112311 | 52.632 | 361 | 156 | 6 | 77 | 428 | 1 | 355 | 2.24e-111 | 332 |
| Msa0036000 | MtrunA17_Chr6g0452641 | 50.313 | 320 | 141 | 7 | 122 | 430 | 28 | 340 | 2.07e-82 | 256 |
| Msa0036000 | MtrunA17_Chr3g0122991 | 46.769 | 325 | 110 | 6 | 79 | 392 | 2 | 274 | 1.83e-79 | 247 |
| Msa0036000 | MtrunA17_Chr1g0202841 | 62.983 | 181 | 65 | 1 | 250 | 430 | 1 | 179 | 1.78e-72 | 225 |
| Msa0036000 | MtrunA17_Chr3g0123471 | 50.916 | 273 | 112 | 9 | 158 | 422 | 1 | 259 | 2.26e-69 | 220 |
| Msa0036000 | MtrunA17_Chr4g0075861 | 53.960 | 202 | 75 | 3 | 11 | 197 | 175 | 373 | 1.11e-50 | 175 |
| Msa0036000 | MtrunA17_Chr7g0243391 | 48.148 | 216 | 108 | 3 | 69 | 282 | 10 | 223 | 1.52e-50 | 171 |
| Msa0036000 | MtrunA17_Chr1g0196231 | 62.893 | 159 | 49 | 5 | 62 | 218 | 216 | 366 | 6.00e-49 | 170 |
| Msa0036000 | MtrunA17_Chr1g0206951 | 65.487 | 113 | 38 | 1 | 80 | 191 | 2 | 114 | 1.67e-40 | 140 |
| Msa0036000 | MtrunA17_Chr1g0187941 | 55.474 | 137 | 61 | 0 | 250 | 386 | 1 | 137 | 3.25e-40 | 140 |
| Msa0036000 | MtrunA17_Chr6g0486591 | 48.466 | 163 | 71 | 4 | 277 | 430 | 1 | 159 | 1.40e-36 | 131 |
| Msa0036000 | MtrunA17_Chr1g0209191 | 61.386 | 101 | 33 | 2 | 332 | 429 | 1 | 98 | 6.98e-35 | 125 |
| Msa0036000 | MtrunA17_Chr1g0196241 | 70.000 | 80 | 20 | 2 | 324 | 402 | 4 | 80 | 6.23e-30 | 111 |
| Msa0036000 | MtrunA17_Chr1g0209061 | 52.212 | 113 | 43 | 1 | 4 | 116 | 6 | 107 | 5.90e-28 | 106 |
| Msa0036000 | MtrunA17_Chr6g0459061 | 27.900 | 319 | 191 | 11 | 85 | 386 | 18 | 314 | 1.74e-22 | 98.2 |
| Msa0036000 | MtrunA17_Chr7g0238781 | 41.045 | 134 | 75 | 4 | 109 | 240 | 27 | 158 | 2.28e-18 | 82.0 |
| Msa0036000 | MtrunA17_Chr8g0364231 | 39.316 | 117 | 63 | 3 | 9 | 125 | 43 | 151 | 6.57e-15 | 77.4 |
| Msa0036000 | MtrunA17_Chr1g0206781 | 36.522 | 115 | 57 | 3 | 2 | 116 | 5 | 103 | 6.76e-14 | 68.2 |
| Msa0036000 | MtrunA17_Chr1g0209201 | 52.941 | 68 | 29 | 2 | 11 | 78 | 19 | 83 | 8.60e-14 | 68.6 |
| Msa0036000 | MtrunA17_Chr5g0415031 | 38.835 | 103 | 55 | 2 | 9 | 111 | 44 | 138 | 9.44e-13 | 70.5 |
| Msa0036000 | MtrunA17_Chr6g0452021 | 32.051 | 156 | 93 | 5 | 9 | 164 | 44 | 186 | 4.98e-12 | 67.4 |
| Msa0036000 | MtrunA17_Chr6g0452001 | 35.897 | 117 | 67 | 2 | 9 | 125 | 64 | 172 | 8.97e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036000 | AT1G24190.2 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.65e-14 | 75.5 |
| Msa0036000 | AT1G24190.3 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.76e-14 | 75.5 |
| Msa0036000 | AT1G24190.1 | 34.752 | 141 | 83 | 3 | 9 | 149 | 15 | 146 | 3.78e-14 | 75.5 |
| Msa0036000 | AT3G01320.2 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.13e-13 | 72.4 |
| Msa0036000 | AT3G01320.1 | 32.051 | 156 | 94 | 4 | 9 | 164 | 58 | 201 | 3.20e-13 | 72.4 |
| Msa0036000 | AT5G15020.2 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.66e-13 | 70.9 |
| Msa0036000 | AT5G15020.1 | 35.593 | 118 | 64 | 3 | 9 | 125 | 53 | 159 | 9.68e-13 | 70.9 |
| Msa0036000 | AT1G59890.1 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.63e-12 | 70.1 |
| Msa0036000 | AT1G59890.4 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.76e-12 | 70.1 |
| Msa0036000 | AT1G59890.3 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.76e-12 | 70.1 |
| Msa0036000 | AT1G59890.2 | 46.988 | 83 | 40 | 2 | 9 | 89 | 46 | 126 | 1.83e-12 | 70.1 |
| Msa0036000 | AT5G15025.1 | 44.595 | 74 | 39 | 1 | 9 | 82 | 48 | 119 | 9.63e-12 | 62.4 |
| Msa0036000 | AT1G10450.3 | 47.674 | 86 | 41 | 2 | 9 | 92 | 85 | 168 | 2.36e-11 | 66.6 |
| Msa0036000 | AT1G10450.2 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.52e-11 | 66.6 |
| Msa0036000 | AT1G10450.1 | 47.674 | 86 | 41 | 2 | 9 | 92 | 34 | 117 | 2.52e-11 | 66.6 |
| Msa0036000 | AT1G70060.2 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.59e-11 | 64.7 |
| Msa0036000 | AT1G70060.1 | 48.485 | 66 | 32 | 1 | 9 | 74 | 15 | 78 | 9.59e-11 | 64.7 |
Find 101 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACTCGATTTATTTCT+TGG | 0.092423 | 1_1:-64341008 | Msa0036000:five_prime_UTR |
| ACCTTCTTTAATCTCGTAAA+TGG | 0.163720 | 1_1:+64339559 | None:intergenic |
| AGGACATACAGATTTAATTT+TGG | 0.178602 | 1_1:-64340758 | Msa0036000:CDS |
| CCTTTACTTCTTCAAATTTC+AGG | 0.195615 | 1_1:-64339736 | Msa0036000:CDS |
| CTCTCATATCCCCACTTGTT+TGG | 0.217984 | 1_1:+64339040 | None:intergenic |
| ACTTATCCAACAATGGAAAA+TGG | 0.296275 | 1_1:-64339388 | Msa0036000:CDS |
| GTAACCAACTTAAGGAAAAT+AGG | 0.297033 | 1_1:+64339229 | None:intergenic |
| GATGACCTATTTCAGTTTGC+TGG | 0.310501 | 1_1:-64339823 | Msa0036000:CDS |
| GTCATCAAAATCTAGTGTTT+TGG | 0.312349 | 1_1:+64339840 | None:intergenic |
| TCTCATATCCCCACTTGTTT+GGG | 0.317017 | 1_1:+64339041 | None:intergenic |
| TTCAAGTCTGACATAATTCA+TGG | 0.319194 | 1_1:+64339132 | None:intergenic |
| TGTCAATAATTTGACTAGAA+TGG | 0.333595 | 1_1:-64338775 | Msa0036000:three_prime_UTR |
| ACAATATGTTGTGTATATTC+AGG | 0.335400 | 1_1:-64338986 | Msa0036000:CDS |
| AATCGAGTGAAGGAGGATTA+AGG | 0.338588 | 1_1:+64341018 | None:intergenic |
| CTCTGAGGAATTTGTCTTGG+TGG | 0.339559 | 1_1:-64339467 | Msa0036000:CDS |
| GTCAATAATTTGACTAGAAT+GGG | 0.344400 | 1_1:-64338774 | Msa0036000:three_prime_UTR |
| AGAGCCAAGAGACTGCTTAA+AGG | 0.355381 | 1_1:-64340778 | Msa0036000:CDS |
| GAGATACCCCAGACCGATTC+GGG | 0.356763 | 1_1:+64340915 | None:intergenic |
| AGAGGAGATTCATGAGGATC+TGG | 0.362823 | 1_1:+64338929 | None:intergenic |
| TTGGTCTAGTATGCTAATAA+AGG | 0.367363 | 1_1:+64339693 | None:intergenic |
| GTACACAATTGTTATTTCCT+TGG | 0.372361 | 1_1:+64339171 | None:intergenic |
| ATACGCGCCTTGCTTGCTTT+TGG | 0.373631 | 1_1:-64339496 | Msa0036000:CDS |
| AGAGAAATATGAACTTCCTT+TGG | 0.379216 | 1_1:-64339881 | Msa0036000:CDS |
| ACACGCCAGCAAACTGAAAT+AGG | 0.383496 | 1_1:+64339818 | None:intergenic |
| TCTTGCAACTGCGGGTTTGA+AGG | 0.389604 | 1_1:-64338909 | Msa0036000:CDS |
| TTGTTAAAATATTTGAGGTC+TGG | 0.397164 | 1_1:-64340835 | Msa0036000:CDS |
| TAAAATTGTTAAAATATTTG+AGG | 0.399386 | 1_1:-64340840 | Msa0036000:CDS |
| GAAGAACTCCCGAATCGGTC+TGG | 0.403343 | 1_1:-64340923 | Msa0036000:CDS |
| CTGCGGGTTTGAAGGTTGAT+TGG | 0.408942 | 1_1:-64338901 | Msa0036000:CDS |
| TTTGAAGAAGTAAAGGTCCT+TGG | 0.419354 | 1_1:+64339743 | None:intergenic |
| CATCACAAGTAACCAACTTA+AGG | 0.431314 | 1_1:+64339221 | None:intergenic |
| TGAGATACCCCAGACCGATT+CGG | 0.439020 | 1_1:+64340914 | None:intergenic |
| TTGCTGGCGTGTGCAAGAAT+TGG | 0.439926 | 1_1:-64339807 | Msa0036000:CDS |
| TATGTCAGACTTGAAACTTT+GGG | 0.450616 | 1_1:-64339124 | Msa0036000:CDS |
| TTGAAGAAGTAAAGGTCCTT+GGG | 0.450950 | 1_1:+64339744 | None:intergenic |
| GTTGTGATACACAGGGAAAA+AGG | 0.453560 | 1_1:-64339917 | Msa0036000:intron |
| AAGAACTCCCGAATCGGTCT+GGG | 0.457288 | 1_1:-64340922 | Msa0036000:CDS |
| TCCATTTACGAGATTAAAGA+AGG | 0.460681 | 1_1:-64339560 | Msa0036000:CDS |
| GCATTTGCCAAAAGCAAGCA+AGG | 0.466413 | 1_1:+64339489 | None:intergenic |
| CAATATGTTGTGTATATTCA+GGG | 0.470299 | 1_1:-64338985 | Msa0036000:CDS |
| AGAGAGGGTTGTTGACTTTG+CGG | 0.470499 | 1_1:-64339365 | Msa0036000:CDS |
| TTCAACGCCTTCCTCCCAAC+TGG | 0.479823 | 1_1:-64340733 | Msa0036000:intron |
| ATCAATCTCGAAATTGTGGT+TGG | 0.483573 | 1_1:-64339414 | Msa0036000:CDS |
| GTTACTAACAAGGTTAACAT+AGG | 0.489348 | 1_1:-64339319 | Msa0036000:CDS |
| GATTCATAAACTACAGAAAA+GGG | 0.491421 | 1_1:+64341126 | None:intergenic |
| AAGGAAAATAGGAATTGTTA+CGG | 0.492083 | 1_1:+64339240 | None:intergenic |
| TTATGTCAGACTTGAAACTT+TGG | 0.492268 | 1_1:-64339125 | Msa0036000:CDS |
| CCTGAAATTTGAAGAAGTAA+AGG | 0.496936 | 1_1:+64339736 | None:intergenic |
| GAATCTCCTCTTGCAACTGC+GGG | 0.498264 | 1_1:-64338917 | Msa0036000:CDS |
| TCAATCTCGAAATTGTGGTT+GGG | 0.502080 | 1_1:-64339413 | Msa0036000:CDS |
| CAAATCAGTTCAATAATCAA+TGG | 0.506442 | 1_1:-64341047 | Msa0036000:five_prime_UTR |
| AGTAGTTTATTTATTGTCCA+AGG | 0.507122 | 1_1:-64339188 | Msa0036000:CDS |
| ATGCTCTGAGGAATTTGTCT+TGG | 0.509803 | 1_1:-64339470 | Msa0036000:CDS |
| ATGTCCTTTAAGCAGTCTCT+TGG | 0.511508 | 1_1:+64340774 | None:intergenic |
| TGAATCTCCTCTTGCAACTG+CGG | 0.513862 | 1_1:-64338918 | Msa0036000:CDS |
| CTGGCGTGTGCAAGAATTGG+AGG | 0.514025 | 1_1:-64339804 | Msa0036000:CDS |
| TGAATATACACAACATATTG+TGG | 0.521442 | 1_1:+64338988 | None:intergenic |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | 1_1:-64339418 | Msa0036000:CDS |
| CGATTCATAAACTACAGAAA+AGG | 0.524691 | 1_1:+64341125 | None:intergenic |
| TTACTAACAAGGTTAACATA+GGG | 0.524806 | 1_1:-64339318 | Msa0036000:CDS |
| TTAAAATATTTGAGGTCTGG+AGG | 0.527038 | 1_1:-64340832 | Msa0036000:CDS |
| TTGAACAATTCAGCGAGCAG+AGG | 0.528085 | 1_1:+64341067 | None:intergenic |
| AAAGTAGTAACTAACCAGTT+GGG | 0.541355 | 1_1:+64340719 | None:intergenic |
| TGAAGAAGCGTTAACTTCAG+AGG | 0.542973 | 1_1:+64339522 | None:intergenic |
| AAGATGAAGAACTCCCGAAT+CGG | 0.552281 | 1_1:-64340928 | Msa0036000:CDS |
| GAGGAGATTCATGAGGATCT+GGG | 0.555738 | 1_1:+64338930 | None:intergenic |
| GAAGCGTTAACTTCAGAGGA+AGG | 0.556189 | 1_1:+64339526 | None:intergenic |
| AGCGTTAACTTCAGAGGAAG+GGG | 0.556461 | 1_1:+64339528 | None:intergenic |
| TGTATCATAATTGAATGTGT+TGG | 0.567872 | 1_1:-64338669 | Msa0036000:three_prime_UTR |
| TGAACAATTCAGCGAGCAGA+GGG | 0.575230 | 1_1:+64341068 | None:intergenic |
| TTCAAACCCGCAGTTGCAAG+AGG | 0.576477 | 1_1:+64338911 | None:intergenic |
| AGAAATAAATCGAGTGAAGG+AGG | 0.577568 | 1_1:+64341011 | None:intergenic |
| AACAATGGAAAATGGAGAGA+GGG | 0.577776 | 1_1:-64339380 | Msa0036000:CDS |
| TAACTAACCAGTTGGGAGGA+AGG | 0.577921 | 1_1:+64340726 | None:intergenic |
| AAGGTTAACATAGGGGTACT+CGG | 0.582340 | 1_1:-64339310 | Msa0036000:CDS |
| AACTACAGAAAAGGGAACAA+AGG | 0.590578 | 1_1:+64341134 | None:intergenic |
| AATATATGTTGTTACTAACA+AGG | 0.592186 | 1_1:-64339329 | Msa0036000:CDS |
| AAGCGTTAACTTCAGAGGAA+GGG | 0.593674 | 1_1:+64339527 | None:intergenic |
| CCAAGAAATAAATCGAGTGA+AGG | 0.596858 | 1_1:+64341008 | None:intergenic |
| TTGGGTTACTTATCCAACAA+TGG | 0.601052 | 1_1:-64339395 | Msa0036000:CDS |
| GCCTATGTTACGTATTCTAG+CGG | 0.612849 | 1_1:-64339628 | Msa0036000:CDS |
| TCCGCTAGAATACGTAACAT+AGG | 0.616925 | 1_1:+64339627 | None:intergenic |
| AATCGGTCTGGGGTATCTCA+AGG | 0.617645 | 1_1:-64340911 | Msa0036000:CDS |
| CATTGATCAACCCAAACAAG+TGG | 0.618149 | 1_1:-64339051 | Msa0036000:CDS |
| CAACAATGGAAAATGGAGAG+AGG | 0.619055 | 1_1:-64339381 | Msa0036000:CDS |
| GAAAATAGGAATTGTTACGG+AGG | 0.623593 | 1_1:+64339243 | None:intergenic |
| ACGTAACATAGGCATGGCGG+AGG | 0.626225 | 1_1:+64339638 | None:intergenic |
| ATTGATCAACCCAAACAAGT+GGG | 0.630697 | 1_1:-64339050 | Msa0036000:CDS |
| TAGAATACGTAACATAGGCA+TGG | 0.637978 | 1_1:+64339632 | None:intergenic |
| AATATGTTGTGTATATTCAG+GGG | 0.641655 | 1_1:-64338984 | Msa0036000:CDS |
| GAACAACAAAACTCGACAGA+GGG | 0.644692 | 1_1:+64341156 | None:intergenic |
| AAAATAGGAATTGTTACGGA+GGG | 0.644724 | 1_1:+64339244 | None:intergenic |
| TACTAACAAGGTTAACATAG+GGG | 0.649187 | 1_1:-64339317 | Msa0036000:CDS |
| GTGATATCAAGCACATCCAA+AGG | 0.656948 | 1_1:+64339865 | None:intergenic |
| TGGCGTGTGCAAGAATTGGA+GGG | 0.662506 | 1_1:-64339803 | Msa0036000:CDS |
| GTAGTAACTAACCAGTTGGG+AGG | 0.669294 | 1_1:+64340722 | None:intergenic |
| TTGATCAACCCAAACAAGTG+GGG | 0.674855 | 1_1:-64339049 | Msa0036000:CDS |
| GTTGCAAGAGGAGATTCATG+AGG | 0.697007 | 1_1:+64338923 | None:intergenic |
| GGAACAACAAAACTCGACAG+AGG | 0.702235 | 1_1:+64341155 | None:intergenic |
| AGAACTCCCGAATCGGTCTG+GGG | 0.703093 | 1_1:-64340921 | Msa0036000:CDS |
| AATACGTAACATAGGCATGG+CGG | 0.750285 | 1_1:+64339635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATTATATTCAA+AGG | + | chr1_1:64338988-64339007 | None:intergenic | 10.0% |
| !! | TAAAATTGTTAAAATATTTG+AGG | - | chr1_1:64339021-64339040 | Msa0036000:CDS | 10.0% |
| !!! | TTGAAATATAAGATATTTTA+AGG | + | chr1_1:64339879-64339898 | None:intergenic | 10.0% |
| !! | ATTATTGACAAAAAAAAAAA+GGG | + | chr1_1:64341076-64341095 | None:intergenic | 10.0% |
| !! | AATTATTGACAAAAAAAAAA+AGG | + | chr1_1:64341077-64341096 | None:intergenic | 10.0% |
| !!! | TTGGTTTTATTATTTTGAAT+TGG | - | chr1_1:64338872-64338891 | Msa0036000:CDS | 15.0% |
| !! | TTTAATAAAATCATGGAAAA+CGG | + | chr1_1:64339852-64339871 | None:intergenic | 15.0% |
| !! | AGGTTTATTTAATAAAATCA+TGG | + | chr1_1:64339859-64339878 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTATTACTCGTT+TGG | - | chr1_1:64339202-64339221 | Msa0036000:CDS | 20.0% |
| !!! | CTTTTTTTTATTACTCGTTT+GGG | - | chr1_1:64339203-64339222 | Msa0036000:CDS | 20.0% |
| !! | TAAAACCTATATTTCTTTGT+AGG | - | chr1_1:64339785-64339804 | Msa0036000:CDS | 20.0% |
| !! | AATAACCTACAAAGAAATAT+AGG | + | chr1_1:64339793-64339812 | None:intergenic | 20.0% |
| !! | AATATATGTTGTTACTAACA+AGG | - | chr1_1:64340532-64340551 | Msa0036000:intron | 20.0% |
| ! | GATTCATAAACTACAGAAAA+GGG | + | chr1_1:64338738-64338757 | None:intergenic | 25.0% |
| !! | CTTTTCTGTAGTTTATGAAT+CGG | - | chr1_1:64338737-64338756 | Msa0036000:three_prime_UTR | 25.0% |
| !! | TTTTCTGTAGTTTATGAATC+GGG | - | chr1_1:64338738-64338757 | Msa0036000:three_prime_UTR | 25.0% |
| ! | CAAATCAGTTCAATAATCAA+TGG | - | chr1_1:64338814-64338833 | Msa0036000:three_prime_UTR | 25.0% |
| !! | TTGTTAAAATATTTGAGGTC+TGG | - | chr1_1:64339026-64339045 | Msa0036000:CDS | 25.0% |
| !!! | AGGACATACAGATTTAATTT+TGG | - | chr1_1:64339103-64339122 | Msa0036000:CDS | 25.0% |
| !!! | GGACATACAGATTTAATTTT+GGG | - | chr1_1:64339104-64339123 | Msa0036000:CDS | 25.0% |
| ! | AGTTAATGCAATGATTGTTA+AGG | - | chr1_1:64339310-64339329 | Msa0036000:CDS | 25.0% |
| ! | AATCATACTAAATGCTTGTT+TGG | - | chr1_1:64339369-64339388 | Msa0036000:CDS | 25.0% |
| ! | GTTTAAATGGAAGACATTTA+GGG | + | chr1_1:64339648-64339667 | None:intergenic | 25.0% |
| ! | TGTTTAAATGGAAGACATTT+AGG | + | chr1_1:64339649-64339668 | None:intergenic | 25.0% |
| !!! | AGTTTACTGGAGAAATTTTT+TGG | - | chr1_1:64340091-64340110 | Msa0036000:intron | 25.0% |
| ! | TTACTAACAAGGTTAACATA+GGG | - | chr1_1:64340543-64340562 | Msa0036000:intron | 25.0% |
| ! | AAGGAAAATAGGAATTGTTA+CGG | + | chr1_1:64340624-64340643 | None:intergenic | 25.0% |
| !! | AATTCCTATTTTCCTTAAGT+TGG | - | chr1_1:64340628-64340647 | Msa0036000:intron | 25.0% |
| ! | AGTAGTTTATTTATTGTCCA+AGG | - | chr1_1:64340673-64340692 | Msa0036000:intron | 25.0% |
| !! | AATGCATAACAGTTTTTCTT+CGG | + | chr1_1:64340794-64340813 | None:intergenic | 25.0% |
| ! | TGAATATACACAACATATTG+TGG | + | chr1_1:64340876-64340895 | None:intergenic | 25.0% |
| ! | ACAATATGTTGTGTATATTC+AGG | - | chr1_1:64340875-64340894 | Msa0036000:CDS | 25.0% |
| ! | CAATATGTTGTGTATATTCA+GGG | - | chr1_1:64340876-64340895 | Msa0036000:CDS | 25.0% |
| ! | AATATGTTGTGTATATTCAG+GGG | - | chr1_1:64340877-64340896 | Msa0036000:CDS | 25.0% |
| !!! | TTTTAGGCATCTAAAATATG+AGG | - | chr1_1:64340985-64341004 | Msa0036000:five_prime_UTR | 25.0% |
| ! | TGTCAATAATTTGACTAGAA+TGG | - | chr1_1:64341086-64341105 | Msa0036000:five_prime_UTR | 25.0% |
| ! | GTCAATAATTTGACTAGAAT+GGG | - | chr1_1:64341087-64341106 | Msa0036000:five_prime_UTR | 25.0% |
| ! | TGTATCATAATTGAATGTGT+TGG | - | chr1_1:64341192-64341211 | Msa0036000:five_prime_UTR | 25.0% |
| CGATTCATAAACTACAGAAA+AGG | + | chr1_1:64338739-64338758 | None:intergenic | 30.0% | |
| ! | TTAAAATATTTGAGGTCTGG+AGG | - | chr1_1:64339029-64339048 | Msa0036000:CDS | 30.0% |
| AAAGTAGTAACTAACCAGTT+GGG | + | chr1_1:64339145-64339164 | None:intergenic | 30.0% | |
| AAAAGTAGTAACTAACCAGT+TGG | + | chr1_1:64339146-64339165 | None:intergenic | 30.0% | |
| TACTAAATGCTTGTTTGGAT+TGG | - | chr1_1:64339374-64339393 | Msa0036000:CDS | 30.0% | |
| ! | ACATGTTTTGTAAGACTGTT+TGG | - | chr1_1:64339418-64339437 | Msa0036000:CDS | 30.0% |
| ATAAGCTGTATGAGCTATAT+TGG | + | chr1_1:64339508-64339527 | None:intergenic | 30.0% | |
| GGATTCAAGAGTTGTTTAAA+TGG | + | chr1_1:64339661-64339680 | None:intergenic | 30.0% | |
| AACAACTCTTGAATCCATAT+TGG | - | chr1_1:64339665-64339684 | Msa0036000:CDS | 30.0% | |
| ACAGTATCTCAATACAATGA+AGG | - | chr1_1:64339717-64339736 | Msa0036000:CDS | 30.0% | |
| CAGTATCTCAATACAATGAA+GGG | - | chr1_1:64339718-64339737 | Msa0036000:CDS | 30.0% | |
| AGAGAAATATGAACTTCCTT+TGG | - | chr1_1:64339980-64339999 | Msa0036000:intron | 30.0% | |
| ! | GTCATCAAAATCTAGTGTTT+TGG | + | chr1_1:64340024-64340043 | None:intergenic | 30.0% |
| !!! | AGAAATTTTTTGGTATCCCA+AGG | - | chr1_1:64340101-64340120 | Msa0036000:intron | 30.0% |
| CCTGAAATTTGAAGAAGTAA+AGG | + | chr1_1:64340128-64340147 | None:intergenic | 30.0% | |
| CCTTTACTTCTTCAAATTTC+AGG | - | chr1_1:64340125-64340144 | Msa0036000:intron | 30.0% | |
| TTGGTCTAGTATGCTAATAA+AGG | + | chr1_1:64340171-64340190 | None:intergenic | 30.0% | |
| ! | AGACCAAAAAGTATATCACT+TGG | - | chr1_1:64340184-64340203 | Msa0036000:intron | 30.0% |
| ! | TCTCCAAGTGATATACTTTT+TGG | + | chr1_1:64340190-64340209 | None:intergenic | 30.0% |
| TCCATTTACGAGATTAAAGA+AGG | - | chr1_1:64340301-64340320 | Msa0036000:intron | 30.0% | |
| ACCTTCTTTAATCTCGTAAA+TGG | + | chr1_1:64340305-64340324 | None:intergenic | 30.0% | |
| ACTTATCCAACAATGGAAAA+TGG | - | chr1_1:64340473-64340492 | Msa0036000:intron | 30.0% | |
| GTTACTAACAAGGTTAACAT+AGG | - | chr1_1:64340542-64340561 | Msa0036000:intron | 30.0% | |
| TACTAACAAGGTTAACATAG+GGG | - | chr1_1:64340544-64340563 | Msa0036000:intron | 30.0% | |
| AAAATAGGAATTGTTACGGA+GGG | + | chr1_1:64340620-64340639 | None:intergenic | 30.0% | |
| GTAACCAACTTAAGGAAAAT+AGG | + | chr1_1:64340635-64340654 | None:intergenic | 30.0% | |
| !! | GTACACAATTGTTATTTCCT+TGG | + | chr1_1:64340693-64340712 | None:intergenic | 30.0% |
| TTCAAGTCTGACATAATTCA+TGG | + | chr1_1:64340732-64340751 | None:intergenic | 30.0% | |
| TTATGTCAGACTTGAAACTT+TGG | - | chr1_1:64340736-64340755 | Msa0036000:CDS | 30.0% | |
| TATGTCAGACTTGAAACTTT+GGG | - | chr1_1:64340737-64340756 | Msa0036000:CDS | 30.0% | |
| ! | GCATTATTTTCTACTTCGAT+TGG | - | chr1_1:64340767-64340786 | Msa0036000:CDS | 30.0% |
| AGAATGGGAAAAACTTGTAA+TGG | - | chr1_1:64341102-64341121 | Msa0036000:five_prime_UTR | 30.0% | |
| AACTACAGAAAAGGGAACAA+AGG | + | chr1_1:64338730-64338749 | None:intergenic | 35.0% | |
| AGAAATAAATCGAGTGAAGG+AGG | + | chr1_1:64338853-64338872 | None:intergenic | 35.0% | |
| CCAAGAAATAAATCGAGTGA+AGG | + | chr1_1:64338856-64338875 | None:intergenic | 35.0% | |
| ! | CCTTCACTCGATTTATTTCT+TGG | - | chr1_1:64338853-64338872 | Msa0036000:CDS | 35.0% |
| TGAACATATGTGAAGTGCAA+TGG | + | chr1_1:64339170-64339189 | None:intergenic | 35.0% | |
| GTACTTAGTAGGTTAAAGCT+TGG | - | chr1_1:64339248-64339267 | Msa0036000:CDS | 35.0% | |
| TATGCAAGCTTATACACAAG+CGG | - | chr1_1:64339597-64339616 | Msa0036000:CDS | 35.0% | |
| ATCACAACAATGACAGTGTT+AGG | + | chr1_1:64339932-64339951 | None:intergenic | 35.0% | |
| TGTCATTGTTGTGATACACA+GGG | - | chr1_1:64339937-64339956 | Msa0036000:intron | 35.0% | |
| ! | GGGCTTTTCATAAAGTTTAC+TGG | - | chr1_1:64340078-64340097 | Msa0036000:intron | 35.0% |
| TTGAAGAAGTAAAGGTCCTT+GGG | + | chr1_1:64340120-64340139 | None:intergenic | 35.0% | |
| TTTGAAGAAGTAAAGGTCCT+TGG | + | chr1_1:64340121-64340140 | None:intergenic | 35.0% | |
| TAGAATACGTAACATAGGCA+TGG | + | chr1_1:64340232-64340251 | None:intergenic | 35.0% | |
| GTCTATCAATCTCGAAATTG+TGG | - | chr1_1:64340443-64340462 | Msa0036000:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | - | chr1_1:64340447-64340466 | Msa0036000:intron | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | - | chr1_1:64340448-64340467 | Msa0036000:intron | 35.0% | |
| TTGGGTTACTTATCCAACAA+TGG | - | chr1_1:64340466-64340485 | Msa0036000:intron | 35.0% | |
| AACAATGGAAAATGGAGAGA+GGG | - | chr1_1:64340481-64340500 | Msa0036000:intron | 35.0% | |
| GAAAATAGGAATTGTTACGG+AGG | + | chr1_1:64340621-64340640 | None:intergenic | 35.0% | |
| CATCACAAGTAACCAACTTA+AGG | + | chr1_1:64340643-64340662 | None:intergenic | 35.0% | |
| ATTGATCAACCCAAACAAGT+GGG | - | chr1_1:64340811-64340830 | Msa0036000:CDS | 35.0% | |
| !! | TGAAGGTTGATTGGTGTTTT+AGG | - | chr1_1:64340969-64340988 | Msa0036000:five_prime_UTR | 35.0% |
| !!! | GTTTTACAGTGTGTTACTTG+TGG | - | chr1_1:64341038-64341057 | Msa0036000:five_prime_UTR | 35.0% |
| GAACAACAAAACTCGACAGA+GGG | + | chr1_1:64338708-64338727 | None:intergenic | 40.0% | |
| AATCGAGTGAAGGAGGATTA+AGG | + | chr1_1:64338846-64338865 | None:intergenic | 40.0% | |
| AAGATGAAGAACTCCCGAAT+CGG | - | chr1_1:64338933-64338952 | Msa0036000:CDS | 40.0% | |
| ATGTCCTTTAAGCAGTCTCT+TGG | + | chr1_1:64339090-64339109 | None:intergenic | 40.0% | |
| TACTAAGTACTAACCGTGGT+CGG | + | chr1_1:64339238-64339257 | None:intergenic | 40.0% | |
| AACCTACTAAGTACTAACCG+TGG | + | chr1_1:64339242-64339261 | None:intergenic | 40.0% | |
| ! | GAAGACATTTAGGGCATGTT+TGG | + | chr1_1:64339639-64339658 | None:intergenic | 40.0% |
| !! | GCTCTGGAACTATACCAATA+TGG | + | chr1_1:64339682-64339701 | None:intergenic | 40.0% |
| !! | TCAAATAGCTTCTGAAGCTC+TGG | + | chr1_1:64339698-64339717 | None:intergenic | 40.0% |
| CTGTCATTGTTGTGATACAC+AGG | - | chr1_1:64339936-64339955 | Msa0036000:intron | 40.0% | |
| GTTGTGATACACAGGGAAAA+AGG | - | chr1_1:64339944-64339963 | Msa0036000:intron | 40.0% | |
| GTGATATCAAGCACATCCAA+AGG | + | chr1_1:64339999-64340018 | None:intergenic | 40.0% | |
| GATGACCTATTTCAGTTTGC+TGG | - | chr1_1:64340038-64340057 | Msa0036000:intron | 40.0% | |
| AATACGTAACATAGGCATGG+CGG | + | chr1_1:64340229-64340248 | None:intergenic | 40.0% | |
| GCCTATGTTACGTATTCTAG+CGG | - | chr1_1:64340233-64340252 | Msa0036000:intron | 40.0% | |
| TCCGCTAGAATACGTAACAT+AGG | + | chr1_1:64340237-64340256 | None:intergenic | 40.0% | |
| AAGCGTTAACTTCAGAGGAA+GGG | + | chr1_1:64340337-64340356 | None:intergenic | 40.0% | |
| !! | TGAAGAAGCGTTAACTTCAG+AGG | + | chr1_1:64340342-64340361 | None:intergenic | 40.0% |
| !! | ATGCTCTGAGGAATTTGTCT+TGG | - | chr1_1:64340391-64340410 | Msa0036000:intron | 40.0% |
| ! | CTCTCTCCATTTTCCATTGT+TGG | + | chr1_1:64340482-64340501 | None:intergenic | 40.0% |
| CAACAATGGAAAATGGAGAG+AGG | - | chr1_1:64340480-64340499 | Msa0036000:intron | 40.0% | |
| !! | AAGGTTAACATAGGGGTACT+CGG | - | chr1_1:64340551-64340570 | Msa0036000:intron | 40.0% |
| CATTGATCAACCCAAACAAG+TGG | - | chr1_1:64340810-64340829 | Msa0036000:CDS | 40.0% | |
| TTGATCAACCCAAACAAGTG+GGG | - | chr1_1:64340812-64340831 | Msa0036000:CDS | 40.0% | |
| TCTCATATCCCCACTTGTTT+GGG | + | chr1_1:64340823-64340842 | None:intergenic | 40.0% | |
| GGAACAACAAAACTCGACAG+AGG | + | chr1_1:64338709-64338728 | None:intergenic | 45.0% | |
| TGAACAATTCAGCGAGCAGA+GGG | + | chr1_1:64338796-64338815 | None:intergenic | 45.0% | |
| TTGAACAATTCAGCGAGCAG+AGG | + | chr1_1:64338797-64338816 | None:intergenic | 45.0% | |
| AGAGCCAAGAGACTGCTTAA+AGG | - | chr1_1:64339083-64339102 | Msa0036000:CDS | 45.0% | |
| TAACTAACCAGTTGGGAGGA+AGG | + | chr1_1:64339138-64339157 | None:intergenic | 45.0% | |
| GTAGTAACTAACCAGTTGGG+AGG | + | chr1_1:64339142-64339161 | None:intergenic | 45.0% | |
| GACCACGGTTAGTACTTAGT+AGG | - | chr1_1:64339237-64339256 | Msa0036000:CDS | 45.0% | |
| CACAGGGAAAAAGGTGAAGA+AGG | - | chr1_1:64339953-64339972 | Msa0036000:intron | 45.0% | |
| ACACGCCAGCAAACTGAAAT+AGG | + | chr1_1:64340046-64340065 | None:intergenic | 45.0% | |
| AGCGTTAACTTCAGAGGAAG+GGG | + | chr1_1:64340336-64340355 | None:intergenic | 45.0% | |
| ! | GAAGCGTTAACTTCAGAGGA+AGG | + | chr1_1:64340338-64340357 | None:intergenic | 45.0% |
| GCATTTGCCAAAAGCAAGCA+AGG | + | chr1_1:64340375-64340394 | None:intergenic | 45.0% | |
| ! | TGCTTTTGGCAAATGCTCTG+AGG | - | chr1_1:64340379-64340398 | Msa0036000:intron | 45.0% |
| ! | CTCTGAGGAATTTGTCTTGG+TGG | - | chr1_1:64340394-64340413 | Msa0036000:intron | 45.0% |
| !! | AGAGAGGGTTGTTGACTTTG+CGG | - | chr1_1:64340496-64340515 | Msa0036000:intron | 45.0% |
| CTCTCATATCCCCACTTGTT+TGG | + | chr1_1:64340824-64340843 | None:intergenic | 45.0% | |
| GAGGAGATTCATGAGGATCT+GGG | + | chr1_1:64340934-64340953 | None:intergenic | 45.0% | |
| AGAGGAGATTCATGAGGATC+TGG | + | chr1_1:64340935-64340954 | None:intergenic | 45.0% | |
| GTTGCAAGAGGAGATTCATG+AGG | + | chr1_1:64340941-64340960 | None:intergenic | 45.0% | |
| TGAATCTCCTCTTGCAACTG+CGG | - | chr1_1:64340943-64340962 | Msa0036000:exon | 45.0% | |
| AAGAACTCCCGAATCGGTCT+GGG | - | chr1_1:64338939-64338958 | Msa0036000:CDS | 50.0% | |
| TGAGATACCCCAGACCGATT+CGG | + | chr1_1:64338950-64338969 | None:intergenic | 50.0% | |
| ! | AATCGGTCTGGGGTATCTCA+AGG | - | chr1_1:64338950-64338969 | Msa0036000:CDS | 50.0% |
| TTGCTGGCGTGTGCAAGAAT+TGG | - | chr1_1:64340054-64340073 | Msa0036000:intron | 50.0% | |
| TGGCGTGTGCAAGAATTGGA+GGG | - | chr1_1:64340058-64340077 | Msa0036000:intron | 50.0% | |
| ! | ATACGCGCCTTGCTTGCTTT+TGG | - | chr1_1:64340365-64340384 | Msa0036000:intron | 50.0% |
| GAATCTCCTCTTGCAACTGC+GGG | - | chr1_1:64340944-64340963 | Msa0036000:exon | 50.0% | |
| TTCAAACCCGCAGTTGCAAG+AGG | + | chr1_1:64340953-64340972 | None:intergenic | 50.0% | |
| TCTTGCAACTGCGGGTTTGA+AGG | - | chr1_1:64340952-64340971 | Msa0036000:exon | 50.0% | |
| ! | CTGCGGGTTTGAAGGTTGAT+TGG | - | chr1_1:64340960-64340979 | Msa0036000:five_prime_UTR | 50.0% |
| GAAGAACTCCCGAATCGGTC+TGG | - | chr1_1:64338938-64338957 | Msa0036000:CDS | 55.0% | |
| AGAACTCCCGAATCGGTCTG+GGG | - | chr1_1:64338940-64338959 | Msa0036000:CDS | 55.0% | |
| ! | GAGATACCCCAGACCGATTC+GGG | + | chr1_1:64338949-64338968 | None:intergenic | 55.0% |
| TTCAACGCCTTCCTCCCAAC+TGG | - | chr1_1:64339128-64339147 | Msa0036000:CDS | 55.0% | |
| TGGGCTATGTAAGCCGACCA+CGG | - | chr1_1:64339222-64339241 | Msa0036000:CDS | 55.0% | |
| CTGGCGTGTGCAAGAATTGG+AGG | - | chr1_1:64340057-64340076 | Msa0036000:intron | 55.0% | |
| ACGTAACATAGGCATGGCGG+AGG | + | chr1_1:64340226-64340245 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64338667 | 64341216 | 64338667 | ID=Msa0036000;Name=Msa0036000 |
| chr1_1 | mRNA | 64338667 | 64341216 | 64338667 | ID=Msa0036000-mRNA-1;Parent=Msa0036000;Name=Msa0036000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=263|1|1|1|1|1|2|186|430 |
| chr1_1 | exon | 64338667 | 64339925 | 64338667 | ID=Msa0036000-mRNA-1:exon:20614;Parent=Msa0036000-mRNA-1 |
| chr1_1 | exon | 64340734 | 64341216 | 64340734 | ID=Msa0036000-mRNA-1:exon:20613;Parent=Msa0036000-mRNA-1 |
| chr1_1 | five_prime_UTR | 64340954 | 64341216 | 64340954 | ID=Msa0036000-mRNA-1:five_prime_utr;Parent=Msa0036000-mRNA-1 |
| chr1_1 | CDS | 64340734 | 64340953 | 64340734 | ID=Msa0036000-mRNA-1:cds;Parent=Msa0036000-mRNA-1 |
| chr1_1 | CDS | 64338853 | 64339925 | 64338853 | ID=Msa0036000-mRNA-1:cds;Parent=Msa0036000-mRNA-1 |
| chr1_1 | three_prime_UTR | 64338667 | 64338852 | 64338667 | ID=Msa0036000-mRNA-1:three_prime_utr;Parent=Msa0036000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
