AlfalfaGEDB | Msa0037010

M. sativa cultivar zhongmu-4 / Msa0037010

KEGG: K13950
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009108 GO:0009110 GO:0009396 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0042537 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0046482 GO:0046483 GO:0046653 GO:0046654 GO:0046655 GO:0046656 GO:0046820 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00117.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037010	sp\|Q6TAS3\|ADCS_SOLLC	64.294	857	270	9	39	870	47	892	0.0	1092

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037010	Msa0069280	0.805396	1.362287e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037010	MtrunA17_Chr1g0199851	97.568	658	16	0	213	870	20	677	0.0	1337
Msa0037010	MtrunA17_Chr1g0199841	85.475	179	23	1	1	176	1	179	1.73e-108	331
Msa0037010	MtrunA17_Chr3g0113261	30.266	413	214	11	492	854	192	580	8.24e-44	168
Msa0037010	MtrunA17_Chr3g0107391	30.918	414	210	13	492	854	191	579	2.25e-43	167
Msa0037010	MtrunA17_Chr3g0116881	30.966	352	205	8	532	854	214	556	2.73e-41	160
Msa0037010	MtrunA17_Chr1g0211991	30.733	423	227	11	490	866	156	558	2.06e-40	157
Msa0037010	MtrunA17_Chr1g0162011	30.859	256	107	10	80	328	71	263	2.02e-21	95.1
Msa0037010	MtrunA17_Chr4g0039031	27.083	192	135	5	669	859	360	547	6.29e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037010	AT2G28880.1	60.850	871	300	5	38	869	44	912	0.0	1057
Msa0037010	AT2G29690.1	30.976	410	239	10	492	866	198	598	2.52e-45	173
Msa0037010	AT3G55870.1	30.446	404	230	11	490	854	74	465	1.02e-40	157
Msa0037010	AT5G05730.1	29.833	419	232	12	480	854	173	573	4.30e-40	157
Msa0037010	AT3G55870.3	30.446	404	230	11	490	854	173	564	5.55e-40	157
Msa0037010	AT5G05730.2	29.148	446	229	14	480	854	173	602	8.79e-39	154
Msa0037010	AT2G29690.2	29.747	316	196	10	492	790	198	504	2.45e-29	123
Msa0037010	AT3G55870.2	29.245	318	193	10	490	787	173	478	2.00e-25	111
Msa0037010	AT5G57890.1	30.830	253	111	9	80	328	73	265	1.13e-21	96.3
Msa0037010	AT1G25220.1	30.830	253	111	9	80	328	76	268	1.15e-21	96.3

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Find 270 sgRNAs with CRISPR-Local

Find 716 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATATTCTTGGAAGG+AGG	0.557570	1_1:+65903656	Msa0037010:CDS
AAAACCTCGGATCCAATAAA+TGG	0.325149	1_1:-65901938	None:intergenic
AAAATGATTAGTGGGACAAA+AGG	0.444299	1_1:-65906607	None:intergenic
AAACCAGAATTTCTACCAGA+AGG	0.570639	1_1:-65900610	None:intergenic
AAACTTTGAAGTTGAAATGG+AGG	0.579267	1_1:+65902959	Msa0037010:CDS
AAAGAAGTTAACGAGAGATT+TGG	0.311002	1_1:-65897201	None:intergenic
AAAGTTCAAGTATTTCACAA+TGG	0.623372	1_1:+65905344	Msa0037010:CDS
AAATCATTGTTGTCTGACCA+TGG	0.543050	1_1:-65906580	None:intergenic
AAATGATGATGTTTATTTAT+TGG	0.138927	1_1:+65905309	Msa0037010:CDS
AAATTCAGCCAAGCCGCATA+AGG	0.485476	1_1:-65905643	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGTTAACGAGAGATT+TGG	-	chr1_1:65897204-65897223	None:intergenic	30.0%
CAGGACCTATCTATTATTAA+CGG	+	chr1_1:65897805-65897824	Msa0037010:CDS	30.0%
TACCACCGTTAATAATAGAT+AGG	-	chr1_1:65897813-65897832	None:intergenic	30.0%
TTTACCATCCACATTCAAAT+TGG	-	chr1_1:65897868-65897887	None:intergenic	30.0%
GTTTATTTATGGTCAATCGT+TGG	+	chr1_1:65897928-65897947	Msa0037010:intron	30.0%
TTGTTCTACATGTAAGAGTT+AGG	+	chr1_1:65898005-65898024	Msa0037010:intron	30.0%
AGTAAGAATATCAAGATGGT+TGG	+	chr1_1:65898033-65898052	Msa0037010:intron	30.0%
GTAAGAATATCAAGATGGTT+GGG	+	chr1_1:65898034-65898053	Msa0037010:intron	30.0%
TAAGAATATCAAGATGGTTG+GGG	+	chr1_1:65898035-65898054	Msa0037010:intron	30.0%
TGGTGATTCAAAATGATGAT+TGG	+	chr1_1:65898213-65898232	Msa0037010:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	65897083	65907633	65897083	ID=Msa0037010;Name=Msa0037010
chr1_1	mRNA	65897083	65907633	65897083	ID=Msa0037010-mRNA-1;Parent=Msa0037010;Name=Msa0037010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=281\|1\|1\|1\|0.92\|0.85\|14\|1093\|870
chr1_1	exon	65897083	65897336	65897083	ID=Msa0037010-mRNA-1:exon:21241;Parent=Msa0037010-mRNA-1
chr1_1	exon	65897499	65897829	65897499	ID=Msa0037010-mRNA-1:exon:21242;Parent=Msa0037010-mRNA-1
chr1_1	exon	65898204	65898335	65898204	ID=Msa0037010-mRNA-1:exon:21243;Parent=Msa0037010-mRNA-1
chr1_1	exon	65899363	65899430	65899363	ID=Msa0037010-mRNA-1:exon:21244;Parent=Msa0037010-mRNA-1
chr1_1	exon	65900361	65900425	65900361	ID=Msa0037010-mRNA-1:exon:21245;Parent=Msa0037010-mRNA-1
chr1_1	exon	65900570	65900636	65900570	ID=Msa0037010-mRNA-1:exon:21246;Parent=Msa0037010-mRNA-1
chr1_1	exon	65901851	65902129	65901851	ID=Msa0037010-mRNA-1:exon:21247;Parent=Msa0037010-mRNA-1
chr1_1	exon	65902240	65902366	65902240	ID=Msa0037010-mRNA-1:exon:21248;Parent=Msa0037010-mRNA-1
chr1_1	exon	65902887	65903092	65902887	ID=Msa0037010-mRNA-1:exon:21249;Parent=Msa0037010-mRNA-1
chr1_1	exon	65903336	65903415	65903336	ID=Msa0037010-mRNA-1:exon:21250;Parent=Msa0037010-mRNA-1
chr1_1	exon	65903598	65903700	65903598	ID=Msa0037010-mRNA-1:exon:21251;Parent=Msa0037010-mRNA-1
chr1_1	exon	65904456	65904538	65904456	ID=Msa0037010-mRNA-1:exon:21252;Parent=Msa0037010-mRNA-1
chr1_1	exon	65905204	65905821	65905204	ID=Msa0037010-mRNA-1:exon:21253;Parent=Msa0037010-mRNA-1
chr1_1	exon	65906060	65907633	65906060	ID=Msa0037010-mRNA-1:exon:21254;Parent=Msa0037010-mRNA-1
chr1_1	five_prime_UTR	65897083	65897336	65897083	ID=Msa0037010-mRNA-1:five_prime_utr;Parent=Msa0037010-mRNA-1
chr1_1	five_prime_UTR	65897499	65897525	65897499	ID=Msa0037010-mRNA-1:five_prime_utr;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65897526	65897829	65897526	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65898204	65898335	65898204	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65899363	65899430	65899363	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65900361	65900425	65900361	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65900570	65900636	65900570	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65901851	65902129	65901851	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65902240	65902366	65902240	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65902887	65903092	65902887	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65903336	65903415	65903336	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65903598	65903700	65903598	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65904456	65904538	65904456	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65905204	65905821	65905204	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	CDS	65906060	65906540	65906060	ID=Msa0037010-mRNA-1:cds;Parent=Msa0037010-mRNA-1
chr1_1	three_prime_UTR	65906541	65907633	65906541	ID=Msa0037010-mRNA-1:three_prime_utr;Parent=Msa0037010-mRNA-1

Gene Sequence

>Msa0037010

ATGAACCTGTCTTTGCGTCTCATATGTCCTACAAGTGAATACAAAAATGTGAATTCTCTTTTGTCCAGACCCTCCTTGGCAAGGGTTTCTTGTTTCATGAAGAGAGATGTATGTAATCGCCGCGATGGAAGAAACACTAGGGTGCATTGCCAATTGATGCATGACCATTTAGAAGAATCGTATAAAAGAAAGAAAATGTTACAAGTGCCTCTACAAAAGCAGGGTTTTGTGAGGACTTTGTTGATTGATAACTATGACAGTTATACATACAATATATACCAGGACCTATCTATTATTAACGGTGTCCCTCCTGTGGTGATTCAAAATGATGATTGGACGTGGGACGAACTTTGCTATTACTTGTACGAAGAAAATGCATTTGATAACATCGTATTATCACCTGGACCTGGTTCTCCGGCATGCCCAGAAGATATAGGTATTTGTCTTCAAATATTGCGTGAATGCAGGGATATTCCTATTCTGGGTGTTTGCCTCGGACACCAGGCATTGGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAGTTCACGGGCGTCTGAGTGAAGTTGAGCACAATGGATGCCAACTTTTTCAGGGCATACCTTCTGGTAGAAATTCTGGTTTCAAGGTGGTTCGATATCATTCGCTGGTGATAGATTCTGAATCGCTTCCTGAAGTGCTCATTCCAATAGCATGGACTTCAAATAGGACACTTCCATTTATTGGATCCGAGGTTTTGGACAAGTACAATGGTCATGAACTTCAGACTGATCAAAGCATTTTCCTTGATTCATTTTTGCCTGAAGCAGGAAACGGAAGTTCAAGCCTTGTTGACTATGGACAAACTAGAAATGCAAGGGTTCTTATGGGAGTCAAGCATTCTACAAGGCCACACTATGGTGTGCAGTTTCATCCAGAGAGTGTTGCAACCTGCCACGGAAGTCAAATATTCAAGAATTTTAGAGAGATTACAGATGATTATTGGCTGAGATGTAGGGCATCATACAACAAGGGAAAACGTGCTAATTCTGATGCACACGCGCAGGTTTCAAGTGCTAGTAGACTCTACAGACATTTAGTACATAGTAATACTGAGGTGAACTACAAAACTTTGAAGTTGAAATGGAGGAAATTTGATCACTTGGCTGGGCAAGTTGGTGGAGCAAAAAGTATATTCTGTCAGTTGTTTGGACAGGAAGCTGAAAACACCTTTTGGTTGGATAGTTCCTCCACAGAGATGGGAAGAGCACGCTTTTCGTTCATGGGAGGAAAAGGTGGATCACTTTGGAAGCAGTTAACGTTCAGGTTGTCTGACCAGAGTGATGAGAGTTCAAAAGGTGGTGGCCATTTATCACTGGAAGATTCTGAAGGTTCTGTCAAAACAATATTCTTGGAAGGAGGTTTTCTTGATTATTTGAACAAGGAGCTTCAATCATATCGTTATGATAAGGATGAATATGAAGGTCTACCATTTGATTTTCACGGCGGATATGTTGGTTACATTGGGTATGACCTCAAAGTTGAATGTGGTGTCACATGTAACCATCACAAATCTAAAACTCCAGATGCATGTTTTTTCTTTGCTGATAATCTTGTTGCTATTGATCACAAAAATGATGATGTTTATTTATTGGCTATACATGAAGAAAGTTCAAGTATTTCACAATGGTTGGATGATACTGAGGAGAAGCTTCTGAGCTTAACTGGTTCTGTGAGGATGGATTTGGAAAGGCAGTACTCTCATCCTTCAACTTTTTCCTCACATAAGGCTGGTTTCGCAGCTGAAAAATCTAAAGAGCAGTACCTTAGAGATGTTAAGAAGTGTCTAAACTATATTAGAGATGGAGAGAGCTATGAGTTGTGCCTCACAACCCAGATAAGGAAACCGATTGAGGTATTAAATTCTCTTGGACTTTACCTACATTTAAGAGAAAGGAATCCAGCACCTTATGCGGCTTGGCTGAATTTTCCAAAGGAAGATCTGTGTATTTGCTGTTCTTCCCCTGAGAGGTTCCTGCAGTTGGATAGGAGTGATATGCTAGAAGCTAAGCCCATTAAGGGTACTATAGCTCGTGGTGCTACTGAGGAGGAAGACAAACAACTCAAATTGAAATTACAGCTCAGTGAAAAGGATCAGGCGGAAAACCTGATGATTGTTGACCTTCTAAGAAATGACCTTGGTCGTGTATGTGATCCTGGATCTGTTGACGTGCCGCATCTCATGGAAGTACAATCATATGCAACTGTTCACACAATGGTGAGTACAATTCGTGGGAAAAAGAGGTCAGATATAAGTGCTGTAGACTGTGTCAAAGCTGCATTTCCTGGTGGTTCGATGACAGGCGCACCAAAGTTGAGATCAATGGAACTTCTTGATTCTCTTGAAAGTTGTTCTCGAGGCATCTACTCAGGCTGCATTGGATTTTTCTCATATAATCAAACATTTGATCTAAATATTGTCATAAGAACAGTTGTTATACATGAGGGTGAAGCTTCCATAGGAGCTGGAGGGGCAATTGTTGCTCTGTCAAACCCAGAAGACGAATACGAAGAGATGATCTTGAAAACAAAAGCACCAGCAAACACTGTGATAGATTATGAATAG

Protein sequence

>Msa0037010

MNLSLRLICPTSEYKNVNSLLSRPSLARVSCFMKRDVCNRRDGRNTRVHCQLMHDHLEESYKRKKMLQVPLQKQGFVRTLLIDNYDSYTYNIYQDLSIINGVPPVVIQNDDWTWDELCYYLYEENAFDNIVLSPGPGSPACPEDIGICLQILRECRDIPILGVCLGHQALGYVHGAQVVHASEPVHGRLSEVEHNGCQLFQGIPSGRNSGFKVVRYHSLVIDSESLPEVLIPIAWTSNRTLPFIGSEVLDKYNGHELQTDQSIFLDSFLPEAGNGSSSLVDYGQTRNARVLMGVKHSTRPHYGVQFHPESVATCHGSQIFKNFREITDDYWLRCRASYNKGKRANSDAHAQVSSASRLYRHLVHSNTEVNYKTLKLKWRKFDHLAGQVGGAKSIFCQLFGQEAENTFWLDSSSTEMGRARFSFMGGKGGSLWKQLTFRLSDQSDESSKGGGHLSLEDSEGSVKTIFLEGGFLDYLNKELQSYRYDKDEYEGLPFDFHGGYVGYIGYDLKVECGVTCNHHKSKTPDACFFFADNLVAIDHKNDDVYLLAIHEESSSISQWLDDTEEKLLSLTGSVRMDLERQYSHPSTFSSHKAGFAAEKSKEQYLRDVKKCLNYIRDGESYELCLTTQIRKPIEVLNSLGLYLHLRERNPAPYAAWLNFPKEDLCICCSSPERFLQLDRSDMLEAKPIKGTIARGATEEEDKQLKLKLQLSEKDQAENLMIVDLLRNDLGRVCDPGSVDVPHLMEVQSYATVHTMVSTIRGKKRSDISAVDCVKAAFPGGSMTGAPKLRSMELLDSLESCSRGIYSGCIGFFSYNQTFDLNIVIRTVVIHEGEASIGAGGAIVALSNPEDEYEEMILKTKAPANTVIDYE*